BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha28_contig00000060
         (4029 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]  2083   0.0  
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...  1860   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1732   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1731   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1729   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1727   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1727   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1721   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1703   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1696   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1670   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...  1662   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1658   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1655   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1654   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1643   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1627   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1622   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...  1618   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1603   0.0  

>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score = 2083 bits (5398), Expect = 0.0
 Identities = 1015/1195 (84%), Positives = 1103/1195 (92%), Gaps = 2/1195 (0%)
 Frame = +2

Query: 134  KIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTE 313
            ++GDNDMIVTQIS+GGL+  ++AK+L DYLED VGLVWRCRVKTSSTPQDSYPN+EI+TE
Sbjct: 3    QVGDNDMIVTQISIGGLEGYVTAKLLSDYLEDNVGLVWRCRVKTSSTPQDSYPNYEIDTE 62

Query: 314  SVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMR 493
            +VQRK EYEKVEPHAFVHFA+A+S+A A++LS +G L+LG  I+KV  GPQNPYRL E R
Sbjct: 63   NVQRKGEYEKVEPHAFVHFAVAQSSASAMKLSGAGDLVLGRHILKVGLGPQNPYRLRERR 122

Query: 494  RTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRG 673
            RTTTP+K+PGV++EIG ++SRDEFVVGWRGP+TG DFLVDPFNGTCQI FT+DTAFSI+G
Sbjct: 123  RTTTPYKVPGVTVEIGAMKSRDEFVVGWRGPRTGLDFLVDPFNGTCQILFTKDTAFSIKG 182

Query: 674  EARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYD 853
            EARPAVIKCNFK+EFVPREIN+IKRYKDF+S+V+L QLAS P LYYRTADDDIEESVP+D
Sbjct: 183  EARPAVIKCNFKMEFVPREINQIKRYKDFSSVVVLFQLASSPLLYYRTADDDIEESVPFD 242

Query: 854  LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI--ER 1027
            LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPR+  QLEKALG+LQ RRVP       ER
Sbjct: 243  LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRHLSQLEKALGYLQNRRVPVENGSPQER 302

Query: 1028 LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQN 1207
            LRVQDEPDFGVPM DPFFCFQYKEGL+FKVMFMVNAVVHKGIINQHQ S  FFDLLR Q 
Sbjct: 303  LRVQDEPDFGVPMADPFFCFQYKEGLNFKVMFMVNAVVHKGIINQHQTSKQFFDLLRSQP 362

Query: 1208 EEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSK 1387
            EE NLVALKHIYSYKRP YDA RALD+V KWL+KNPKLLQ+P+QMDDIVEVRRL+ITPSK
Sbjct: 363  EELNLVALKHIYSYKRPVYDAYRALDSVTKWLIKNPKLLQRPDQMDDIVEVRRLVITPSK 422

Query: 1388 AYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSP 1567
            AYCLPPEVELSNRVLR Y++ISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVRE+T NL+P
Sbjct: 423  AYCLPPEVELSNRVLRNYKNISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREITSNLNP 482

Query: 1568 QKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKF 1747
            Q+TTMF+RVRDILY+GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ T+V  IK WMGKF
Sbjct: 483  QRTTMFKRVRDILYQGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRKTSVVCIKTWMGKF 542

Query: 1748 TNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVA 1927
            TNRNVAKCAARMGQCFSSTYATVEVP +QAN K  DVERN Y+FSDGIGMIS+DLAKEVA
Sbjct: 543  TNRNVAKCAARMGQCFSSTYATVEVPSAQANSK-SDVERNGYIFSDGIGMISADLAKEVA 601

Query: 1928 EKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRF 2107
            EKLQ+ T LPCA+QIRYAGYKGVVACWPA  NG RLQLR SM+KFDS+HTTLEICSWTRF
Sbjct: 602  EKLQLRTKLPCAYQIRYAGYKGVVACWPAENNGHRLQLRPSMKKFDSDHTTLEICSWTRF 661

Query: 2108 QPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAA 2287
            QPGFLNRQIVTLLS+LEV D+ FWRMQELM++RLD ILEDPDMAFDVLT SC+D GNTAA
Sbjct: 662  QPGFLNRQIVTLLSSLEVCDENFWRMQELMIARLDGILEDPDMAFDVLTASCSDQGNTAA 721

Query: 2288 MMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 2467
            MMLAAGFR   EPHLRGML SIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF
Sbjct: 722  MMLAAGFRSHTEPHLRGMLMSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 781

Query: 2468 IQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHL 2647
            IQVS PSLEDCFA HGSEFS+TKK+LEVI GLVVIAKNPCLHPGDVRILEAVDV GL HL
Sbjct: 782  IQVSKPSLEDCFANHGSEFSETKKDLEVIKGLVVIAKNPCLHPGDVRILEAVDVRGLHHL 841

Query: 2648 HDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRG 2827
            +DCL+FPQKGERPH NEASGSDLDGDLYFVTWDD LIPPSK+SW PMDYEPGEVK KPR 
Sbjct: 842  YDCLVFPQKGERPHANEASGSDLDGDLYFVTWDDTLIPPSKRSWLPMDYEPGEVKLKPRE 901

Query: 2828 VTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGK 3007
            VTHSDIIEFFTKNMVNESLGTICNAHVVHAD S+YGALDEKCIKLAELAAIAVDFPKTGK
Sbjct: 902  VTHSDIIEFFTKNMVNESLGTICNAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGK 961

Query: 3008 IVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIF 3187
            IV+MPP+LKP++YPDFMGKEELQSYKSTKILGKLYRR+RDAYN DYE S QLTYP++ I 
Sbjct: 962  IVTMPPDLKPQMYPDFMGKEELQSYKSTKILGKLYRRVRDAYNLDYEASSQLTYPAD-IS 1020

Query: 3188 YDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQG 3367
            YD+ELE+TGS+DFIADAWSCKCSYDGQL GLLGQYKVNSEDEVVTGHIWSMPK SSKKQG
Sbjct: 1021 YDQELEVTGSKDFIADAWSCKCSYDGQLAGLLGQYKVNSEDEVVTGHIWSMPKFSSKKQG 1080

Query: 3368 ELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKS 3547
            ELKERLKHAY+ALRKDYRKVFECM P FDQL DHEKNV YEQKASAWYQV+Y ++WV+KS
Sbjct: 1081 ELKERLKHAYNALRKDYRKVFECMAPGFDQLPDHEKNVLYEQKASAWYQVTYQDNWVKKS 1140

Query: 3548 KELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
            KELQ++DD GKTVLLSFAWIAADYL RIKIR+R+MENAIS KPIDSLGRYLADKI
Sbjct: 1141 KELQELDDSGKTVLLSFAWIAADYLARIKIRRRRMENAISGKPIDSLGRYLADKI 1195


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score = 1860 bits (4819), Expect = 0.0
 Identities = 897/1199 (74%), Positives = 1036/1199 (86%), Gaps = 3/1199 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            MG +I D +MIVTQIS+GGL  N++AKML+DY ED +GLVWRCR+KTSSTP +SYPN+EI
Sbjct: 1    MGSEISDREMIVTQISVGGLGSNVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEI 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            + +S ++  +Y K++P+AFVHF +A+SA +A+E +  G L    +++KVS GPQNPYRLS
Sbjct: 61   DIDSAKQSDDYVKIQPYAFVHFVVAESANKAVEAASRGDLRFAGKLLKVSLGPQNPYRLS 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
            E RRTTTP+K+    +EIG LRSR+E VVGWRGP++G DFLVDPF+GTC++H  RDTAF 
Sbjct: 121  ERRRTTTPYKLSDAFVEIGSLRSREELVVGWRGPRSGVDFLVDPFSGTCKLHIKRDTAFC 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             +GEAR A+IKC+F+IEF PREI EIK Y+DF+S++IL+QLAS P +YYRTADDDIEE  
Sbjct: 181  FKGEARSAIIKCDFRIEFFPREIIEIKHYRDFSSLIILIQLASSPLIYYRTADDDIEEPA 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI- 1021
              DLLDDDDPWIRTTDF   GA GR NTYRISVRP N   L KAL +L++RRVP + +  
Sbjct: 241  TCDLLDDDDPWIRTTDFTSGGAFGRCNTYRISVRPHNGPHLLKALDYLRKRRVPVLDERT 300

Query: 1022 -ERLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198
             +RL VQDEPDFG+P+ DPF C QYKEG+SFKVMF++NAV+HKGIINQHQ+S+   D+ R
Sbjct: 301  RQRLVVQDEPDFGMPVLDPFLCIQYKEGISFKVMFLLNAVMHKGIINQHQISEQLLDMFR 360

Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378
            RQ E+ N VALKH+ SYKRP YDA +A++ VQ+WL+KNPKLL++P  MDDIVEVRRLIIT
Sbjct: 361  RQPEDVNTVALKHMCSYKRPVYDAFKAVETVQRWLLKNPKLLERPRGMDDIVEVRRLIIT 420

Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558
            P+KAYCLPPEVELSNRVLR Y++++DRFLRVTF DEAM TLNKN LTYY  P+VR +T +
Sbjct: 421  PAKAYCLPPEVELSNRVLRHYKAVADRFLRVTFTDEAMSTLNKNALTYYVGPMVRGITSS 480

Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738
             +PQ+TT+F+R++DIL+ GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK   V +IKNWM
Sbjct: 481  SNPQRTTIFKRIKDILHSGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKDIGVANIKNWM 540

Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918
            G+FTNRNVAKCAARMGQCFSSTYATVEVP  Q N KL D+ERN+YVFSDGIGM+S+DLA 
Sbjct: 541  GRFTNRNVAKCAARMGQCFSSTYATVEVPSKQVNSKLPDIERNDYVFSDGIGMLSADLAM 600

Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098
            EVAEKLQ+ TNLP A+QIRYAGYKGVVACWPA  +G RL LR SM+KFDSNHT LEICSW
Sbjct: 601  EVAEKLQLTTNLPSAYQIRYAGYKGVVACWPAQSDGFRLSLRKSMKKFDSNHTVLEICSW 660

Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278
            TRFQPGFLNRQI+TLLSALEV D+ FWRMQE M+SRL+ +LED D AFDVLT SCTD GN
Sbjct: 661  TRFQPGFLNRQIITLLSALEVGDEIFWRMQETMISRLNQMLEDTDTAFDVLTSSCTDQGN 720

Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458
            TAA+ML+AGF+P  EPHLRGML+SIRV+QLGDLRE++RIFV SGRWLMGCLDELGVLE+G
Sbjct: 721  TAAIMLSAGFKPQTEPHLRGMLTSIRVAQLGDLRERARIFVPSGRWLMGCLDELGVLEHG 780

Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638
            QCFIQVS PSLEDCF KHGSEFS  KK LEVI GLV IAKNPCLHPGDVRILEAVD PGL
Sbjct: 781  QCFIQVSNPSLEDCFVKHGSEFSGAKKKLEVIKGLVAIAKNPCLHPGDVRILEAVDCPGL 840

Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818
             HL+DCL+FPQKGERPH NEASGSDLDGDLYFVTWD+NL+PPSK+SW PM+Y PGEVK+ 
Sbjct: 841  HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLMPPSKRSWTPMEYAPGEVKQL 900

Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998
            PR V H+DIIEFFTKNMVNESLG ICNAHVVHAD+S+YGALDEKCIKLAELAAIAVDFPK
Sbjct: 901  PREVKHTDIIEFFTKNMVNESLGAICNAHVVHADSSEYGALDEKCIKLAELAAIAVDFPK 960

Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178
            TGKIV+MP ELKPKLYPDFMGK+E Q+YKS+KILGKLYR+I+D+ N DYE S + T  S 
Sbjct: 961  TGKIVTMPAELKPKLYPDFMGKDEFQTYKSSKILGKLYRKIKDS-NYDYEESSENT--SV 1017

Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358
            NI YD+ELEI GS  FI DAW+CKCSYDGQL GLLGQYKVNSE+EVVTGHIWSMPK SSK
Sbjct: 1018 NIAYDQELEIAGSESFITDAWNCKCSYDGQLTGLLGQYKVNSEEEVVTGHIWSMPKYSSK 1077

Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538
            KQGELKERLKHAYS LRKD+RKVFE M  +FDQLSD EKN  +E+KASAWYQV+Y+ESWV
Sbjct: 1078 KQGELKERLKHAYSTLRKDFRKVFESMDAEFDQLSDDEKNTMFERKASAWYQVTYNESWV 1137

Query: 3539 EKSKELQKVDDP-GKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
            +KSK+LQ VDD  GKTV+LSFAWIAADYL RIKIR+R+MENAIS KPIDSLGRYLADKI
Sbjct: 1138 KKSKDLQVVDDEVGKTVMLSFAWIAADYLARIKIRRRRMENAISMKPIDSLGRYLADKI 1196


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1733 bits (4487), Expect = 0.0
 Identities = 848/1198 (70%), Positives = 990/1198 (82%), Gaps = 2/1198 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            MG +  + D++VTQIS+GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP F++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            + E VQR  +YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
            + RRTT PFK   VSIE+GVL S+D+FVVGWRGP+TG DFLVDPFNG C+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VILLQLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378
               EE NL ALKH++SYK P  DA++ L  ++KWL+KNPKLL++  ++DDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738
             +PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638
            QCFIQVS+PSLE+CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVPGL
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358
            +I YD  LEI GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+Y+  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
             +S ELQ  D    TV+LSFAWIAADYL RIKIR R ++ + S+KPI+SLGRYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1731 bits (4483), Expect = 0.0
 Identities = 846/1198 (70%), Positives = 992/1198 (82%), Gaps = 2/1198 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            MG +  + D++VTQIS+GG D +++AKML +YLE++VG VWRCR+K S+TP DSYP ++I
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            + E V R  +YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
            + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VIL QLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +   RRVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378
             + EE NL ALKH++SYK P  DA++ L  +QKWL+KNPKLL++  ++DDIVEVRRL+IT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738
             +PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098
            EVAEKL ++ N P A+QIRYAGYKGVVACWP   +G  L LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638
            QCFIQVS+PSLE+CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358
            +I YD  L I GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+Y+  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
             +S ELQ  D    TV+LSFAWIAADYL RIKIR R ++ + S+KPI+SLGRYL DKI
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1729 bits (4477), Expect = 0.0
 Identities = 844/1198 (70%), Positives = 989/1198 (82%), Gaps = 2/1198 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            MG +  + +++VTQIS+GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP ++I
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            + E VQR   YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
            + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VIL QLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +   RRVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198
            R  LRV+DEPDFGV M DPFFCFQ  EG+SF+V+F+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359

Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378
               EE N  ALKH++SYK P  DA++ L  +QKWL+KNPKLL +  ++DDIVEVRRL+IT
Sbjct: 360  SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738
             +PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638
            QCFIQVS+PSLE+CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358
            +I YD  LEI GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTG+IWSMPK ++K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAK 1079

Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+YH  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
             +S ELQ  D    TV+LSFAWIAADYL RIKIR R+++ + S+KPI+SLGRYL D I
Sbjct: 1140 ARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1727 bits (4474), Expect = 0.0
 Identities = 845/1198 (70%), Positives = 987/1198 (82%), Gaps = 2/1198 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            MG +  + +++VTQIS+GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP ++I
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            + E VQR   YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
            + RRTT PFK   VS+E+GVL S+ +FVVGWRGP+TG DFLVDPFNGTC+I FT+DT FS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             RGEAR A+IKCNFKIEF+ REINEIK+ KDF S+VILLQLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKV+F+ NAV+HKGI+NQHQM + FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378
               EE NL ALKH++SYK P  DA++ L  +QKWL+KNPKLL++  ++DDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738
             +PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M++ LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638
            QCFIQVS+PSLE+CF KHGS+FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+N+IPPSKKSW PM+YEP EVK+ 
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899

Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358
            +I YD  LEI GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+YH  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
             +S ELQ  D    TV+LSFAWIAADYL RIKIR R +  + S+KPI+SLGRYLADKI
Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1727 bits (4473), Expect = 0.0
 Identities = 845/1198 (70%), Positives = 987/1198 (82%), Gaps = 2/1198 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            MG +  + +++VTQIS GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP ++I
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            + E VQR   YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
            + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNGTC+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VILLQLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378
             + EE N  ALKH++SYK P  DA++ L  +QKWL+KNPKLL +  ++DDIVEVRRL+IT
Sbjct: 360  SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738
             +PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918
            G+F+NRNVAKCAARMGQCFSSTYATVEVP  + N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638
            QCFIQVS+PSLE+CF KHG +FS  K+NL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358
            +I YD  LEI GS  FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+YH  WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
             +S ELQ  D    TV+LSFAWIAADYL RIKIR R+++ + S+KPI+SLGRYL D I
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1721 bits (4457), Expect = 0.0
 Identities = 839/1198 (70%), Positives = 987/1198 (82%), Gaps = 2/1198 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            MG +  + D++VTQIS+GG D +++AKML +YLE++VG VWRCR+K S+TP DSYP +++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            +   V R  +YEKV PHAFVHFA ++SA  AL  +    L+LG + + VS GP+NPYRL+
Sbjct: 61   DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
            + RRTT PFK   VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNG C+I FT+DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             RGEA+ A+IKCNFKIEF+ REINEIK++KDFTS+VILLQLAS P ++YRTADDDIEESV
Sbjct: 181  FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198
            R  LRV+DEPDFGV M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378
               EE NL ALKH++SYK P  DA++ L  +QKWL+KNPKLL++  ++DDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558
            P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738
             +PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918
            G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599

Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098
            EVAEKL +  N P A+QIRYAG KGVVACWP   +G  L LR SM+KFDSNHT LEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278
            TRFQPGFLNRQIVTLLS+L+V+D  FW MQ+ M+S L+ +L D D+AFDV+T SC + GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719

Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458
            TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638
            QCFIQVS+PSLE+CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVPGL
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ 
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998
             R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178
            TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358
            +I YD  LEI GS  F+ DAW+CKCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538
            KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+Y+  WV
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
             +S ELQ  D    TV+LSFAWIAADYL RI IR R ++ + S+KPI+SLGRYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1703 bits (4411), Expect = 0.0
 Identities = 829/1198 (69%), Positives = 981/1198 (81%), Gaps = 2/1198 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            MG +  + D++VTQIS+GG   +++AKML + LED+VG VWRCR+KTSSTP DSYP ++I
Sbjct: 1    MGSEGSEKDLVVTQISVGGFSNDVNAKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            + E+V+R   Y KVEPHAFVHFA ++SA  AL  +    L L  + +KVS GP+NP+ ++
Sbjct: 61   DVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENPFNMN 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
            + RRT  PFK   V +EIGVL S D+FVVGWRGP +G +FLVDPFNGTC+I FTRDTAF 
Sbjct: 121  KRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFC 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             +GE + AVIKCNFKIEF+ REINEI   KDF S+V+LLQL S P ++YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESV 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024
             +DLLDDDD WIRTTD   SGAIGR NTYRIS+RPRN   L+KA+ + +E RVP V    
Sbjct: 241  AFDLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGN 300

Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198
            R  LRV+DEPDFGV + +PFFCFQ  EG+SFKV+F+VNAV+ KGI+NQHQM+  FF LLR
Sbjct: 301  RQMLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLR 360

Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378
            +  E  NL ALKHI+SYKRP  DA++ L +VQKWL KNP LL++  Q+DD+VEVRRL+IT
Sbjct: 361  KHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVIT 420

Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558
            P+KAYCLPP VELSNRVLRKY+ +SDRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T +
Sbjct: 421  PTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSS 480

Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738
             +PQ+T +FQRV+ IL KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V +I NWM
Sbjct: 481  SNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWM 540

Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918
            GKF NRNVAKCAARMGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+S+DL+ 
Sbjct: 541  GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSI 600

Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098
            EVA KLQ+  N PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSW
Sbjct: 601  EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 660

Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278
            TR QPGFLNRQI+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GN
Sbjct: 661  TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 720

Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458
            TAA+ML+AGF+P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDEL  LE G
Sbjct: 721  TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQG 780

Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638
            QCFIQVS+PSLE CF KHG +FS+ KKNL+VI GLVVIAKNPCLHPGDVRILEAVDVPGL
Sbjct: 781  QCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 840

Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818
             HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PMDY P E K+ 
Sbjct: 841  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQL 900

Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998
             R V H+DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK
Sbjct: 901  GRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 960

Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178
            TGK+V+MP +LKPK+YPDFMGKE  Q+Y+S KILGKLYR++ D Y+ +   S  L +  +
Sbjct: 961  TGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPK 1020

Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358
            +I YD  +EI G  DFI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K
Sbjct: 1021 DIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1080

Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538
            KQGELKERLKHAY+ LRK++R VFE M PDFD L   EKN  YE+KASAWY+V+YH  WV
Sbjct: 1081 KQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWV 1140

Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
             +S ELQ  D     V+LSFAWIAADY+ RIKIRQR M+N+ S+KPI+ LGRYL +KI
Sbjct: 1141 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1696 bits (4392), Expect = 0.0
 Identities = 827/1197 (69%), Positives = 977/1197 (81%), Gaps = 1/1197 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            MG +  D +++VTQIS+GG   +++AKML +YLE++VG VWRCR+KTSSTP DSYP ++I
Sbjct: 1    MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            + E V+R   Y KVEPHAFVHFA ++SA  AL  +    L L  + +KVS GP+N + ++
Sbjct: 61   DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
            E RRT  P+K   V +EIGVL S D+FVVGWRGP +G +FLVDPFNG C+I FTRDTAF 
Sbjct: 121  ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             +GE + AVIKCNFKIEF+ REINEI   KDF+S+V+LLQLAS P ++YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024
             +DLLDDDD WIRTTD   SGAIGR NTYR+S+RPRN    +KA+ + +E RVP V   E
Sbjct: 241  AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQGE 300

Query: 1025 R-LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRR 1201
            + LRV++EPDFG  + +PFFCFQ  EG+SFKV+F+VNAV+HKGI+NQHQM+  FF LLR+
Sbjct: 301  QMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRK 360

Query: 1202 QNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITP 1381
              E  NL ALKHI+SYKRP  DA+R L +VQKWL  NP LL++  Q+DD+VEVRRL+ITP
Sbjct: 361  HQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITP 420

Query: 1382 SKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNL 1561
            +KAYCLPP VELSNRVLRKY+ ISDRFLRVTFMDE M+ LN+N LTYYAA IVRE+T + 
Sbjct: 421  TKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSS 480

Query: 1562 SPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMG 1741
            +PQ+T +FQRV+ I+ KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V SI NWMG
Sbjct: 481  NPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMG 540

Query: 1742 KFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKE 1921
            KF NRNVAKCAARMGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+++DL+ E
Sbjct: 541  KFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIE 600

Query: 1922 VAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWT 2101
            VA KLQ+  N PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSWT
Sbjct: 601  VAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWT 660

Query: 2102 RFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNT 2281
            R QPGFLNRQI+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GNT
Sbjct: 661  RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNT 720

Query: 2282 AAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQ 2461
            AA+ML+AGF+P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDELG LE GQ
Sbjct: 721  AAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQ 780

Query: 2462 CFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLK 2641
            CFIQVS+PSLE CF KHG EFS+ KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVPGL 
Sbjct: 781  CFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH 840

Query: 2642 HLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKP 2821
            HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y P E K+  
Sbjct: 841  HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLG 900

Query: 2822 RGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKT 3001
            R V H+DII+FF KNMV ESLG ICNAHVVHAD S++GA+DEKC+KLAELAA+AVDFPKT
Sbjct: 901  RQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKT 960

Query: 3002 GKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSEN 3181
            GK+V+MP +LKPK+YPDFMGKE  QSY+S KILGKLYR++ D Y+ +   S  L Y  ++
Sbjct: 961  GKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKD 1020

Query: 3182 IFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKK 3361
            I YD  LEI G  DFI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KK
Sbjct: 1021 IPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKK 1080

Query: 3362 QGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVE 3541
            QGELKERLKHAY+ LRK++R VFE M PDFD L   EKN  YE+KA AWY+V+YH  WV 
Sbjct: 1081 QGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWVT 1140

Query: 3542 KSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
            +S ELQ  D     V+LSFAWIAADY+ RIKIRQR M+N  S+KPIDSLGRYL +KI
Sbjct: 1141 RSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1670 bits (4326), Expect = 0.0
 Identities = 794/1190 (66%), Positives = 973/1190 (81%), Gaps = 2/1190 (0%)
 Frame = +2

Query: 149  DMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 325
            + +VTQ+SLGG D +++AK L++YLE ++GLVWRCR+KTS TP +SYPNFEI +   + R
Sbjct: 9    ETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITR 68

Query: 326  KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 505
              +Y +VEPHAFVHFAL +SA  A++ ++   L L ++ +K S GP+NP+ L++ RR TT
Sbjct: 69   TEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTT 128

Query: 506  PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 685
            PFK+ GV +EIG L SRDEF VGWRGP TG DFLVDPF+GTC+  F+R+TAFS +  A  
Sbjct: 129  PFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEH 188

Query: 686  AVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDD 865
            AVIKC+FK+EF+ R+INEIK+Y + + +V+LLQLAS P+++YRTADDDIE SVP+DLLDD
Sbjct: 189  AVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDD 248

Query: 866  DDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDE 1045
            DDPWIRTTDF  SGAIGR ++YR+S+ PR+  +L KA+ FL+ERRV        +R++DE
Sbjct: 249  DDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDE 308

Query: 1046 PDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLV 1225
            PDFG+PM DPFFC  +KEG++F V+F+VNAV+HKGI NQHQ+S++FFDLLR Q  E N+ 
Sbjct: 309  PDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVA 368

Query: 1226 ALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCLPP 1405
            ALKHIY Y+RP +DA + L   Q+WL+KNPK  +  +++DDI E+RRL+ITP+KAYCLPP
Sbjct: 369  ALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPP 428

Query: 1406 EVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMF 1585
            EVELSNRVLRKY+ ++DRFLRVTFMDE +QT+N N L Y+AAPIVR +T    PQKT +F
Sbjct: 429  EVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIF 488

Query: 1586 QRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVA 1765
            +RVR IL +GFYLCGR+YSFLAFSSNQLRDRSAWFFAED++  V +IK+WMGKFTN+N+A
Sbjct: 489  KRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIA 548

Query: 1766 KCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMH 1945
            KCAARMGQCFSSTYAT+EVPP + N  L D++RN Y FSDGIGMI+ DLA+EVAEKL+  
Sbjct: 549  KCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKFD 608

Query: 1946 TNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLN 2125
             + PCA+QIRYAG KGVVACWP   +G RL LR+SM KF SNHT LEICSWTRFQPGFLN
Sbjct: 609  FDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLN 668

Query: 2126 RQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAG 2305
            RQI+TLLSAL V D  FW+MQELMVS+L+ +L D D+AFDVLT SC + GN AA+ML+AG
Sbjct: 669  RQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAG 728

Query: 2306 FRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTP 2485
            F+P  EPHLRGML+ +R +QL  LREK+RIFV SGRWLMGCLDELGVLE GQCFIQVS  
Sbjct: 729  FKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNS 788

Query: 2486 SLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIF 2665
             LE+CF KHGS+FS+TKKNL+V+ G VVIAKNPCLHPGD+RILEAVD PGL HL+DCL+F
Sbjct: 789  YLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVF 848

Query: 2666 PQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDI 2845
            PQKGERPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+  E K+  R V H DI
Sbjct: 849  PQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDI 908

Query: 2846 IEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPP 3025
            +EFF KNM NE+LG ICNAHVV AD S+YGALDEKC+ LAELAA AVDFPKTGKIVSMP 
Sbjct: 909  VEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPS 968

Query: 3026 ELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAY-NQDYEPSPQLTYPSENIFYDREL 3202
            +LKPK+YPDFMGKEE QSYKS KILG+LYR+I+DAY + D   S +L +   +I YD +L
Sbjct: 969  DLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDL 1028

Query: 3203 EITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKER 3382
            E+ G+ DFI+DAW  KCSYDGQL GLL QYKV  E+EVVTGH+WSMPK SS+KQG+LKER
Sbjct: 1029 EVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKER 1088

Query: 3383 LKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQK 3562
            LKH+Y+ L++++R+VFE M  DF QL D EKN+ YE+KASAWYQV+YH  W++KS ELQ 
Sbjct: 1089 LKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQD 1148

Query: 3563 VDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
             D  G +V+LSFAWIAADYL RIKIR  ++ N  S+KP++SL +YLAD++
Sbjct: 1149 SDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score = 1662 bits (4305), Expect = 0.0
 Identities = 800/1191 (67%), Positives = 963/1191 (80%), Gaps = 1/1191 (0%)
 Frame = +2

Query: 143  DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESV 319
            + D +VTQ+S+GG  ++++AK LM+Y +++VG+VWRCR+KTS TP +SYPNFEI ++  +
Sbjct: 7    EKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVI 66

Query: 320  QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 499
            QR  +Y+KVEPHAFVHFA   +A  A++ +    L+  +Q++KVS GP+NPY L+  RR 
Sbjct: 67   QRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRN 126

Query: 500  TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 679
            TTPFK+  V ++IG + SRDEF VGWRGP  G DFLVDPF+GTC+  F+RDTAFS +G  
Sbjct: 127  TTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTT 186

Query: 680  RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 859
              AVIKC+FK+EF+ R+INEIK+Y + + +V+ LQLAS P+++YRTADD+IEESVP+DLL
Sbjct: 187  EYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLL 246

Query: 860  DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 1039
            DDDD WIRTTDF PSGAIGR NTYR+ +RPR+  +L+KAL +L+E+RVP       LR+ 
Sbjct: 247  DDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRIS 306

Query: 1040 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 1219
            DEPDFG  M DPF+C  YKEG+ F++MF+VNAV+HKGI NQHQ+S++FF+LLR Q  E N
Sbjct: 307  DEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVN 366

Query: 1220 LVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCL 1399
            + ALKHIYSY+RP +DA + L  V  WL++NP L + P+Q+DDIVE+RRL+ITP+KA+CL
Sbjct: 367  VAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCL 426

Query: 1400 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTT 1579
             PEVELSNRVLRKY+ ++DRFLRVTFMDE MQT+N NVLTYYAA IVR+VT     QKT 
Sbjct: 427  LPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTG 486

Query: 1580 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 1759
            +F+RVR IL  GFYLCGRKYSFLAFS+NQLRD SAWFFAED  T+V  I  WMGKFTNRN
Sbjct: 487  VFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRN 546

Query: 1760 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 1939
            +AKCAARMGQCFSSTYATVEVP ++ N  L D+ERN YVFSDGIG I+ DLAKEVA+KL+
Sbjct: 547  IAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLK 606

Query: 1940 MHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 2119
            +  N PCA+QIRYAG KGVVACWP   +G RL LR SM KF S+HTTLEICSWTRFQPGF
Sbjct: 607  LDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGF 666

Query: 2120 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 2299
            LNRQI+TLLS   V D+ FW MQ  MVS+L+ IL D D+AF+VLT SC++ GN AA+ML+
Sbjct: 667  LNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLS 726

Query: 2300 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 2479
            AGF+P  EPHLRG+L+ +R SQL  LREK+RIFV SGRWLMG LDELGVLE GQCFIQVS
Sbjct: 727  AGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVS 786

Query: 2480 TPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCL 2659
             PS+E+CF KHGS F++TKKN EVI GLVVIAKNPCLHPGD+RILEAVD PGL HL+DCL
Sbjct: 787  NPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 846

Query: 2660 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 2839
            +FPQKGERPH NEASGSDLDGDLYFVTW+D LIPP KKSWPPM Y+PGE KE  R V H 
Sbjct: 847  VFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHK 906

Query: 2840 DIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 3019
            DII+FF KNMVNE LGTICNAHVVHAD S+YGALDEKCI LAELAA AVDFPKTGKIVSM
Sbjct: 907  DIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSM 966

Query: 3020 PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRE 3199
            P  LKPKLYPDFMGKEE QSYKS KILG+LYR I+D Y++D   S ++   S +I YD +
Sbjct: 967  PANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINYDTD 1026

Query: 3200 LEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKE 3379
            LE+TGS D+I DAW  KCSYD QL+GLLGQYKV  E+EVVTGHIWSMPK +S+K G+LKE
Sbjct: 1027 LEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLKE 1086

Query: 3380 RLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQ 3559
            +L H+Y ALRK++R++FE M  + +QL++ E+N  YE+KASAWYQV+YH  WVEK  ELQ
Sbjct: 1087 KLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKLELQ 1146

Query: 3560 KVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
            K D     V+LSFAWIAADYL RIKIR +   N   SKP++SL +YLADKI
Sbjct: 1147 KSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1658 bits (4293), Expect = 0.0
 Identities = 787/1192 (66%), Positives = 974/1192 (81%), Gaps = 4/1192 (0%)
 Frame = +2

Query: 149  DMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 325
            + +VTQ+S+GG D +++AK L++YL+  +GLVWRCR+KTS TP +SYPNFEI +   ++R
Sbjct: 9    ETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIER 68

Query: 326  KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 505
              +Y +V PHAFVHFAL +SA  A+  S    L L ++ +KVS GP+NP+ L++ RRTTT
Sbjct: 69   TEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTT 128

Query: 506  PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 685
            PFK+  V  EIG L SRDEF VGWRGP +G DFLVDPF+GTC+  F+R+TAFS++  +  
Sbjct: 129  PFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEH 188

Query: 686  AVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDD 865
            AVIKC+FK+EF+ R+INEI +Y + + +V+LLQLAS P ++YRTADDDIE  VP+DLLDD
Sbjct: 189  AVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDD 248

Query: 866  DDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE---RLRV 1036
            DDPWIRTTDF  SGAIGR ++YR+S+ PR+  +L KA+ +L+ERRV  + +     R+R+
Sbjct: 249  DDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRI 308

Query: 1037 QDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEF 1216
             DEPDFG+PM DPFFC  +KEG++F+V+F+VNAV+HKGI NQHQ+S++FFDLLR Q+ E 
Sbjct: 309  LDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEV 368

Query: 1217 NLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYC 1396
            N+ ALKHI +Y+RP ++A R L  VQ+WL+KNP L + P+Q+ D+VE+RRL+ITP+KAYC
Sbjct: 369  NVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYC 428

Query: 1397 LPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKT 1576
            LPPEVELSNRVLRKY+ ++DRFLRVTFMDE +Q +N NVL YY APIVR++T N  PQKT
Sbjct: 429  LPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKT 488

Query: 1577 TMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNR 1756
             +F+RVR IL +GFYLCGR+YSFLAFS+NQLRD+SAWFF+E+++ +V  +K+WMGKFTNR
Sbjct: 489  RIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTNR 548

Query: 1757 NVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKL 1936
            N+AKCAARMGQCFSSTYAT+EVPP + N  L D+ERN YVFSDGIG+I+ DLA+EVAEKL
Sbjct: 549  NIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKL 608

Query: 1937 QMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPG 2116
            ++  + PCA+QIRYAG KGVVACWP   +G RL LR SM KF SNHTTLEICSWTRFQPG
Sbjct: 609  KLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPG 668

Query: 2117 FLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMML 2296
            FLNRQI+TLLS L V D  FW+MQE MVS+L+ +  + D+AFDVLT SC D GN AA+ML
Sbjct: 669  FLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIML 728

Query: 2297 AAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQV 2476
            +AGF+P  EPHLRGML+ +R +QL DLREK+RIFV SGRWLMGCLDELG+LE GQCFIQV
Sbjct: 729  SAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQV 788

Query: 2477 STPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDC 2656
            S  SLE CF KHG++FS+ +KNL+VI G VVIAKNPCLHPGDVR+LEAVDVPGL HL+DC
Sbjct: 789  SNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDC 848

Query: 2657 LIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTH 2836
            L+FPQKGERPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+  E K   R V H
Sbjct: 849  LVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNH 908

Query: 2837 SDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVS 3016
             DIIEFF KNMVN++LG ICNAHVVHAD S+YGA D+ C+ LAELAA AVDFPKTGK+VS
Sbjct: 909  QDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVS 968

Query: 3017 MPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDR 3196
            MPP LKPK+YPDFMGKEE QSYKS KILG+LYR+I+DAY++D   S +L     +I YD 
Sbjct: 969  MPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDIPYDS 1028

Query: 3197 ELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELK 3376
            +LE+ G+ D+I+DAW  KCSYDGQL GLL QYKV  E+EVVTGHIWSMPK SS+KQGELK
Sbjct: 1029 DLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELK 1088

Query: 3377 ERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKEL 3556
            +RLKH+Y++L+K++R++FE M  +F+QL D EKN  YEQKASAWYQV YH  WV+KS EL
Sbjct: 1089 DRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLEL 1148

Query: 3557 QKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
            Q  D  G +V+LSFAWIAADYL RIKIR R+  N  S+KP++SL +YLAD++
Sbjct: 1149 QDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1655 bits (4285), Expect = 0.0
 Identities = 797/1203 (66%), Positives = 963/1203 (80%), Gaps = 7/1203 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            M  K  + + +VTQ+S GG DK+++A+ L+ YL++++G VWRCR+KTS TP +SYPNFEI
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 305  -NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRL 481
             +T  +QR   Y +VEPHAFVHFA   SA  A   +    L    + +KVS GP+NP+ L
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 482  SEMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAF 661
            ++ RRTT PFK+  V +EIG L SRDEF+VGWRGP +G DFLVDPF+G C+  FTRDTAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 662  SIRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEES 841
            S +G    AVI+C+FK+EF+ R+INEIK+Y D + +VILLQLAS P ++YRTADDDIE  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 842  VPYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI 1021
            VP+DLLDDDDPWIRTTDF PSGAIGR N+YR+S+ PR+  +L++AL FL+ERRV      
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 1022 ERLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRR 1201
              L V  EP++ +PM DPFFC  ++EG+ F +MF+VNAV+HKGI NQHQ+SD+FFDLLR 
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 1202 QNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITP 1381
            Q  + N+ AL+HI SYK P +DA + L  VQ+WL+KNPKL +  +Q+DDIVE+RRL ITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 1382 SKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNL 1561
            ++AYCLPPEVELSNRVLR+Y+ I+D+FLRVTFMDE +QT+N N LTYY APIVR++T N 
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480

Query: 1562 SPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMG 1741
              QKT +F+RV+ IL  GFYLCGRKYSFLAFSSNQLRDRSAWFFAED  T+V  I+NWMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540

Query: 1742 KFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKE 1921
            KFTNRN+AKCAARMGQCFSSTYATVEVP ++A   L D+ERNNY+FSDGIGMI+ DLAKE
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600

Query: 1922 VAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWT 2101
            VAEKL++  N PCA+QIRYAG KGVVACWPA  +G RL LR SM KF SNHTTLEICSWT
Sbjct: 601  VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660

Query: 2102 RFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNT 2281
            RFQPGFLNRQI+TLLS L+V D+ FW+MQ +MVS+L+ +  D D+AFDV+T SC + GNT
Sbjct: 661  RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720

Query: 2282 AAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQ 2461
            AA+ML+AGF P  EPHL GML+ IR +QL  LREK+RIFV SGRWLMGCLDELGVLE+GQ
Sbjct: 721  AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780

Query: 2462 CFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLK 2641
            CFIQVS PSLE CF KHGS FS++KK L+V+ G VV+AKNPCLHPGD+RILEAVD P L 
Sbjct: 781  CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840

Query: 2642 HLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKP 2821
            HLHDCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+  E K+  
Sbjct: 841  HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900

Query: 2822 RGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKT 3001
            R V H DII+FF KNMVNE+LG ICNAHVVHAD S+YGALDE CIKLAELAA AVDFPKT
Sbjct: 901  RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960

Query: 3002 GKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE- 3178
            GK+V+MPP LKPKLYPDFMGKE+ QSY S KILG+LYR+++D YN D +        SE 
Sbjct: 961  GKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSEL 1020

Query: 3179 -----NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMP 3343
                 +I YD++LE++GS D+I DAW  KCSYDGQL GLL QYKV  E+EVVTGHIWSMP
Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMP 1080

Query: 3344 KSSSKKQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSY 3523
            K +S+KQGELKERLK +Y +L+K++R+VFE M  DF+QL++ EKN+ YEQKASAWYQV+Y
Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAY 1140

Query: 3524 HESWVEKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLA 3703
            H  WV KS ELQ+ D  G   +LSFAWIAADYL RIKIR R  +   +SKP++SL +YLA
Sbjct: 1141 HPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLA 1200

Query: 3704 DKI 3712
            D+I
Sbjct: 1201 DRI 1203


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1654 bits (4282), Expect = 0.0
 Identities = 804/1194 (67%), Positives = 970/1194 (81%), Gaps = 4/1194 (0%)
 Frame = +2

Query: 143  DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESV 319
            + DM+VTQIS+GG D+ ++A  L  YLED +G V RCR+KTSSTP +SYP+FEI +T  +
Sbjct: 7    EKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKI 66

Query: 320  QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 499
            +R  +Y+KVEPHAFVHF   ++A  AL+ +    L L  + +KVS GP+ P+ L++ RRT
Sbjct: 67   ERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRT 126

Query: 500  TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 679
            T PFK P V +EIG+L SRDE+  GWRGP +G DFLVDPF+GTC+  FT+DTAFS +G  
Sbjct: 127  TFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMP 186

Query: 680  RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 859
            + AVIKCNFK+EF+ REINE+++ +D +S+++LLQL+S P +YYRTADDDIEE+VP+DLL
Sbjct: 187  KHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLL 246

Query: 860  DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LR 1033
            DDDDPWIRTTDF  SGAIGR N+YRIS+ PR   +L+KA+ +L+ RRV  + D  +  LR
Sbjct: 247  DDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLR 306

Query: 1034 VQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEE 1213
            V+DEPDFG+PM DPFFC Q+KEG+ F+VMF+VNAV+HKGIINQHQ+SD FFDLLR Q ++
Sbjct: 307  VRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKD 366

Query: 1214 FNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAY 1393
             N+ ALKHI SY+ P +DA + L  V KWL+KNPKLL+ P+++DDIVEVRRL+ITPSKAY
Sbjct: 367  INIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAY 426

Query: 1394 CLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQK 1573
            CLPPEVELSNRVLR Y+ +SDRFLRVTFMDE MQT+N NVL YY APIV+ +T N  PQK
Sbjct: 427  CLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQK 486

Query: 1574 TTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTN 1753
            T +F+RV+ IL  GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK T+V +IK+WMGKFTN
Sbjct: 487  TRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN 546

Query: 1754 RNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEK 1933
            RNVAKCAARMGQCFSSTYATVEVP  +   +L D++RN Y FSDGIG I  DLA EVAEK
Sbjct: 547  RNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEK 605

Query: 1934 LQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQP 2113
            L++    P A+QIRYAG KGVVACWP+  +G RL  R SM KF S+HT LEICSWTRFQP
Sbjct: 606  LKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQP 664

Query: 2114 GFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMM 2293
            GFLNRQIVTLLSAL V D  FW+MQE M+S+L+ +L D D+AFDVL  SC + GNTAA+M
Sbjct: 665  GFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIM 724

Query: 2294 LAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQ 2473
            L+AGF+P  EPHL+GML+ IR +Q   LREK+RIFV SGRWLMGCLDELGVLE GQCFIQ
Sbjct: 725  LSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQ 784

Query: 2474 VSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHD 2653
            VS+PSLE+CF KHGS FS  +KNL+VI G+V IAKNPCLHPGDVRILEAVD PGL+HL D
Sbjct: 785  VSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVD 843

Query: 2654 CLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVT 2833
            CL+FPQKG+RPH NEASGSDLDGDLYFVTW++ LIPPSK+SWPPM Y+  E K   R VT
Sbjct: 844  CLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVT 903

Query: 2834 HSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIV 3013
              DII+FFTKNMVNE+LG ICNAHVVHAD S+YGALDE C+ LAE AA AVDFPKTGK+V
Sbjct: 904  SLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLV 963

Query: 3014 SMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYD 3193
            ++PP LKPK+YPDFMGKEE Q+Y+S KILGK+YR+I+DAYN+D   S +  + ++ + +D
Sbjct: 964  TLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFD 1023

Query: 3194 RELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGEL 3373
             +L I GS DFI DAW  KCSYDGQL GLLGQYKV  E+EVVTGH+WSMPK  S+KQGEL
Sbjct: 1024 EDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGEL 1083

Query: 3374 KERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKE 3553
             ERLKHAYS+L+K++R++FE M  DFDQL+D EKN  YEQKASAWYQV+YH +WV+KS E
Sbjct: 1084 TERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLE 1143

Query: 3554 LQKVDDP-GKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
            LQ  D+  G+ V+LSFAWI ADYL RIKIR++   N  SSKPI+SL R+L D+I
Sbjct: 1144 LQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1643 bits (4254), Expect = 0.0
 Identities = 790/1192 (66%), Positives = 966/1192 (81%), Gaps = 2/1192 (0%)
 Frame = +2

Query: 143  DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFE-INTESV 319
            + D +VTQIS+GG D+++ AK LMD+LE +VG+V+RCR+KTS T ++SYP FE IN+E++
Sbjct: 7    EKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFENINSENI 66

Query: 320  QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 499
                +  +VEPHAFVHFA  +S    L    S  LML +Q +KV+ GP+  YR+++ RRT
Sbjct: 67   MESIDIRQVEPHAFVHFASPESVNWTL----SNPLMLNNQTLKVTLGPETLYRMNQRRRT 122

Query: 500  TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 679
            TTP K+  V +EIG L  RDEF V WRGP  G DFLVDPF+G C+  FTRDTAFS +  A
Sbjct: 123  TTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFKDMA 182

Query: 680  RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 859
            + A++KC+FK+EF+ R+INEIK+Y D + +V+LL LAS P+++YRTADDDIE SVP+DLL
Sbjct: 183  KLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPFDLL 242

Query: 860  DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 1039
            DDDDPWIRTTDF PSGAIGR N+YR+S+ PR+  +L+KA+ +L+ERRV      + LR+Q
Sbjct: 243  DDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKALRIQ 302

Query: 1040 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 1219
             EPDF VPM DP F    K G+ F++MF++N +VHKGI NQH +SD  FDL R Q  E N
Sbjct: 303  SEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQPREIN 362

Query: 1220 LVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCL 1399
            L ALKHI SYKRP +DA   L NVQ+WL++NPKLL+ P Q+DDI EVRRL+ITP++AYCL
Sbjct: 363  LAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYCL 422

Query: 1400 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTT 1579
            PPEVELSNRVLRKY+ +SDRFLRVTFMDE MQT+N NVLTYY APIV+E+T N + QKT 
Sbjct: 423  PPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTK 482

Query: 1580 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 1759
            +F+RV+ +L  GFYLCG++YSFLAFSSNQLRDRSAWFFAED   TV+ IK WMG+F NRN
Sbjct: 483  VFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGRFNNRN 542

Query: 1760 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 1939
            +AKCAARMGQCFSSTYATVEVP ++ N  L+++ERN YVFSDGIGMI+ DLAKEVAEKL+
Sbjct: 543  IAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKLK 602

Query: 1940 MHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 2119
            +  N P A+QIRYAG KGVVACWP   +G RL LR SM KFDS HT LEICSWTRFQPGF
Sbjct: 603  LDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGF 662

Query: 2120 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 2299
            LNRQIVTLLS L V D+ FW+MQE M+ +L+ +L D D+AF+VLT SC + GN  A+ML+
Sbjct: 663  LNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLS 722

Query: 2300 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 2479
            AGF+P +EPHL+GML+ IR +QL  LREK+RIFV  GRWLMGCLDELGVLE GQCFIQVS
Sbjct: 723  AGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVS 782

Query: 2480 TPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCL 2659
            TPSLE+CF+KHGS FS+TK NLEVI G VVIAKNPCLHPGD+RILEAVDVPGL HL+DCL
Sbjct: 783  TPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCL 842

Query: 2660 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 2839
            +FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y+P + +  PR VT  
Sbjct: 843  VFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVTQK 902

Query: 2840 DIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 3019
            DII+FF++NMVNESLG ICNAHVVHAD S YGALDEKC+ LAELAAIAVDFPKTG IV+M
Sbjct: 903  DIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTM 962

Query: 3020 PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRE 3199
            P  LKPK+YPDFMGKEE QSYKSTKI+G+LYR+I+D Y+ D  PS +L   S NI +D +
Sbjct: 963  PAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFDTD 1022

Query: 3200 LEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKE 3379
            LE+ G+ DF+ DAW  KCSYDGQL GL+ QYKV  E+EVVTG IWSMPK +S+K+G+LKE
Sbjct: 1023 LEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDLKE 1082

Query: 3380 RLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKEL- 3556
            RLKH+Y+ LRK++R+VFE +  DF+QL+D EKNV YE++ASAWYQ++YH  WV+KS+++ 
Sbjct: 1083 RLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKWVKKSQDMH 1142

Query: 3557 QKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
             ++++    V+LSFAWIAADYL RIKIR R + +A S+KPI+SLG+YLAD+I
Sbjct: 1143 DQLEEVKNVVMLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1627 bits (4212), Expect = 0.0
 Identities = 786/1189 (66%), Positives = 960/1189 (80%), Gaps = 2/1189 (0%)
 Frame = +2

Query: 152  MIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRK 328
            ++  Q+S GG D+N+ A  L+ YLE++VG VWRCR+KTS TP +SYP+F + NT  V++ 
Sbjct: 10   LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKT 69

Query: 329  TEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTP 508
             +YEKVEPHAFVHFA+     RA++ +    L L  Q +KVS GP+NP+RL++  RT+TP
Sbjct: 70   DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129

Query: 509  FKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPA 688
            FK+P V +EIG L SRDEF V WRGP +G DFLVDPF+GTC+  FTRD AF+++     A
Sbjct: 130  FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189

Query: 689  VIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDD 868
            VIKC FK+EF+ REIN +K+Y +F+ + ILLQLAS P+++YRTADDDI   VP+D+LDDD
Sbjct: 190  VIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDD 249

Query: 869  DPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEP 1048
            DPWIRTTDF PSGAIGR N+YRIS+  R+R +L K + +L ERRV        + +++EP
Sbjct: 250  DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP 309

Query: 1049 DFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVA 1228
            DF VPM DPFFC  Y+EG+SF++MF+VNAV+HKGIINQHQ+SD+FFDLLR Q+ E N+ A
Sbjct: 310  DFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAA 369

Query: 1229 LKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCLPPE 1408
            LKHIYSYK P +DA + L  VQ+WL+K+P+L + P+Q+DDIVEVRRL+ITP+KAYCLPPE
Sbjct: 370  LKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPE 429

Query: 1409 VELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQ 1588
            VELSNRVLRKY+ ++DRFLRVTFMDE +QT+N NVL+Y+ APIVR++T N   QKT +F+
Sbjct: 430  VELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFK 489

Query: 1589 RVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAK 1768
            RVR IL  GFYLCGRK+SFLAFSS+QLRD SAWFF+ED  T+V  IK WMG+FT++N+AK
Sbjct: 490  RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAK 549

Query: 1769 CAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHT 1948
            CAARMGQCFSSTYATVEVPP++ + +L D++RN YVFSDGIG I+ DLA EVA+KL++  
Sbjct: 550  CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV 609

Query: 1949 NLP-CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLN 2125
            N P CA+QIRYAG KGVVACWPA  +G R+ LR SM KF S+HTTLEICSWTRFQPGFLN
Sbjct: 610  NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLN 669

Query: 2126 RQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAG 2305
            RQI+TLLS L V D+ FW MQ+ M+S+L+ +L D D+AF+VLT +C + GNTAA+ML+AG
Sbjct: 670  RQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAG 729

Query: 2306 FRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTP 2485
            F P  EPHLRGML+ IR +QL  LREK+RIFV +GRWLMGCLDELGVLE GQCFIQVS P
Sbjct: 730  FNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEP 789

Query: 2486 SLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIF 2665
             L +CF+KHGS F++TKK L+VI G VVIAKNPCLHPGD+RILEAVD P L HL+DCL+F
Sbjct: 790  FLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848

Query: 2666 PQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDI 2845
            PQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSWPPM+Y   E K   R V   DI
Sbjct: 849  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI 908

Query: 2846 IEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPP 3025
            IEFF K+MVNE+LGTICNAHVVHAD S+YGALDE CI LAELAA AVDFPKTGKIV+MP 
Sbjct: 909  IEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPA 968

Query: 3026 ELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELE 3205
             LKPKLYPDFMGKE  QSYKS KILG+LYR+ +DAY++D   S ++     +I YD +LE
Sbjct: 969  HLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLE 1028

Query: 3206 ITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERL 3385
            +  S DFIADAW+ KCSYDGQL GLL QYKVN E+E+VTGHIWSMPK +S+KQGELKERL
Sbjct: 1029 VPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERL 1088

Query: 3386 KHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKV 3565
            KH+YSALRK++R+VFE M  D + LS+ EKN  +E+KASAWYQV+YH  WV+KS +LQ+ 
Sbjct: 1089 KHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQ 1148

Query: 3566 DDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
            D     VLLSFAWIA DYL RIKIR R+M N  +SKP++ L RY+AD+I
Sbjct: 1149 DSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1622 bits (4200), Expect = 0.0
 Identities = 790/1189 (66%), Positives = 953/1189 (80%), Gaps = 1/1189 (0%)
 Frame = +2

Query: 149  DMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 325
            + +VTQ+S+GG D+++ A+ LM YLE++VGLVWRCR+KTS TP +SYPNFEI +T  +QR
Sbjct: 9    ETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQR 68

Query: 326  KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 505
            K  Y+KVEPHAFVHFA  ++   A++ +    L   +Q++KVS GP+NPY L+  RR TT
Sbjct: 69   KDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTT 128

Query: 506  PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 685
            PFK+P VS+EIG L S DEF+VGWRGP +G +FLVDPF+ TC+  F+RDTAFS +G    
Sbjct: 129  PFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEH 188

Query: 686  AVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDD 865
            AVIKC+FK+EF+ REINE+K+Y + T  V+LLQLAS P ++YRTADDD E++VP+ LLDD
Sbjct: 189  AVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLDD 248

Query: 866  DDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDE 1045
            DD WIRTTDF  SGAIGR NTYR+ VRPR+  +L+KA+ +L+ERRVP      +LR++DE
Sbjct: 249  DDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRDE 308

Query: 1046 PDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLV 1225
            PDFG  M D F+ + YKEG+ F++MF+VNAV+HKGI NQHQ+S +FF LLR Q+ E N+ 
Sbjct: 309  PDFGRSMSDHFY-YIYKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNVA 367

Query: 1226 ALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCLPP 1405
            ALKHIYSY+ P YDA   L +V  WL+KNPKL + P Q+DDIVE+RRL+ITP+KAYCL P
Sbjct: 368  ALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLLP 427

Query: 1406 EVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMF 1585
            EVELSNRVLRKY+ ++DRFLRVTFMDE MQ +N NVLTYY A IVR+VT     QKT +F
Sbjct: 428  EVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGVF 487

Query: 1586 QRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVA 1765
            +RV+ IL  GFYLCGRKYSFLAFS+NQLRDR+AWFFAED    V  I  WMGKFTNRN+A
Sbjct: 488  KRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNIA 547

Query: 1766 KCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMH 1945
            KCAARMGQCFSSTYATVEVP  Q N  L D++RN Y FSDGIG I+ DLA EVA+KL++ 
Sbjct: 548  KCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKLKLD 607

Query: 1946 TNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLN 2125
             N PCA+QIRYAG KGVVACWP   +  RL LR+SM KF S+HTTLEICSWTRFQPGFLN
Sbjct: 608  LNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFLN 667

Query: 2126 RQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAG 2305
            RQI+TLLS L V D+ FW MQ  MVS+LD +L D D AF+V+  SC + G+T A+ML+AG
Sbjct: 668  RQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAIMLSAG 727

Query: 2306 FRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTP 2485
            F+P  EPHLRGML+ +R SQL  LREKSRIF+HSGRWLMG LDELGVLE GQCFIQVS P
Sbjct: 728  FKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNP 787

Query: 2486 SLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIF 2665
            SL++CF KHGS F++TKKN EVI GLVVIAKNPCLHPGD+RILEAVD PGL HL+DCL+F
Sbjct: 788  SLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVF 847

Query: 2666 PQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDI 2845
            PQKGERPH NEASGSDLDGDLYFVTW++ LIPPSKKS  PM Y+    +E  R VTH DI
Sbjct: 848  PQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHKDI 907

Query: 2846 IEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPP 3025
            IEFF+KNMVNE LG+ICNAHVVH+D S++GA DEKCI LAELAAIAVDFPKTGKIVSMP 
Sbjct: 908  IEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMPA 967

Query: 3026 ELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELE 3205
            +LKPKLYPDFMGKEE QSYKS KILG+LYR I+DAY++D   S +L + + +I YD +LE
Sbjct: 968  QLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYDADLE 1027

Query: 3206 ITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERL 3385
            ITGS D+I DAW+ KCSYDGQL+GLL QYKV  E+EVVTG IWSMPK +SKK G+LKE+L
Sbjct: 1028 ITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKEKL 1087

Query: 3386 KHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKV 3565
             H+Y +LRK++R++FE M  +F+QL++ EKN  YE+KASAWYQV+YH  WV+K  E QK 
Sbjct: 1088 GHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQKP 1147

Query: 3566 DDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
            D     V+LSFAWIAADYL RIK+R +  EN   +KP++SL RYLAD+I
Sbjct: 1148 DGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1618 bits (4190), Expect = 0.0
 Identities = 778/1197 (64%), Positives = 959/1197 (80%), Gaps = 1/1197 (0%)
 Frame = +2

Query: 125  MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304
            M ++  +N  +VTQ+S GG   +  AK L+ YLED++GLV+RCR+KTS TP +S+PNFEI
Sbjct: 1    MEFEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI 60

Query: 305  NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484
            NT  V+R  +Y +VEPHAFVHF    S   A++ +    L   ++ +KVS GP+NPY L+
Sbjct: 61   NTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLN 120

Query: 485  EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664
              RRT TPFK+  V +EIG L  +DEF   WRGP  G DF+VDPF+GTC+  FT DTAFS
Sbjct: 121  RRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFS 180

Query: 665  IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844
             +G  + AVIKC+FK+EF+ REI EIK+Y D + +VILL+L S P + YRTADDDI++SV
Sbjct: 181  FKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSV 240

Query: 845  PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024
            P+DLLDDDDPWIRTTDF PSGAIGR N+YR+ + PR+  +L+KA+ +L+ERRV  V    
Sbjct: 241  PFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKW 300

Query: 1025 RLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 1204
              ++QDEPDFG+   +PFF  QY+EG+SF++MF+VNAV+HKG +NQHQ+SD+FF LLR Q
Sbjct: 301  PPKIQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQ 360

Query: 1205 NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPS 1384
             +E N+ ALKH+ SY+ P +DA   L  VQ WL+KNPKL++ P+++DDI EVRRL+ITP+
Sbjct: 361  PKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPT 420

Query: 1385 KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLS 1564
            KAYCLPPEVELSNRVLRKY+ ++DRFLRVTFMDE MQ +N NVL YY APIV+E+T N  
Sbjct: 421  KAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSF 480

Query: 1565 PQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 1744
             QKT +F+R R IL  GFYLCGRKY+FLAFSSNQLRDRSAWFFAE  + +V  I +WMGK
Sbjct: 481  LQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGK 540

Query: 1745 FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 1924
            F N+NVAKCAARMGQCFSSTYATVEV  S+ N  + D++RN YVFSDGIGMI+ DLA EV
Sbjct: 541  FNNKNVAKCAARMGQCFSSTYATVEVTSSEVND-IPDIKRNGYVFSDGIGMITPDLALEV 599

Query: 1925 AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 2104
            AEKL++  N PCA+QIR+AG KGVVACWP+  +G RL LRTSM KF+S HTTLEICSWTR
Sbjct: 600  AEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTR 659

Query: 2105 FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 2284
            +QPGFLNRQI+TLLS L VED+ FWRMQE MV +L+ +L D D+AFDVLT SC + GN A
Sbjct: 660  YQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAA 719

Query: 2285 AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 2464
            A+ML+AGF+P  EPHLRGML+ I+ +QL  LREK+RIFVHSGRWLMG LDELGVLE GQC
Sbjct: 720  AIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQC 779

Query: 2465 FIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKH 2644
            F+QVSTP LE CFAKHGS F++ ++NL+VI G VVIAKNPCLHPGD+RILEAVD PGL H
Sbjct: 780  FVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHH 839

Query: 2645 LHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPR 2824
            L+DCL+FPQKG+RPH +EASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y+P E K + R
Sbjct: 840  LYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGR 899

Query: 2825 GVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTG 3004
             VT  DII+FF KNM NE+LG ICNAHVVHAD S YGALD  C+KLAELAA+AVDFPKTG
Sbjct: 900  PVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTG 959

Query: 3005 KIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENI 3184
            KIVS+P  LKP+LYPDF+GKE+ QSYKSTKILG+LYR++RDAY++D   S +L Y   +I
Sbjct: 960  KIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDI 1019

Query: 3185 FYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQ 3364
             YD +LE+ G+ DF+ DAW  KCSYDGQL GL+GQYKV  E+E+VTGH+WS+PKS+SKKQ
Sbjct: 1020 PYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQ 1079

Query: 3365 GELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEK 3544
            GELKERL H+Y+AL+K++R++FE +  + + L+D EKN+  E+KASAWYQV+YH  WV++
Sbjct: 1080 GELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQ 1139

Query: 3545 SKELQKVDDPGK-TVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
            S  LQ+ D PG   V+LSFAWIAADYL RIKI+   +E+  S+KPI+SL RYLAD+I
Sbjct: 1140 SPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1603 bits (4151), Expect = 0.0
 Identities = 765/1191 (64%), Positives = 943/1191 (79%), Gaps = 1/1191 (0%)
 Frame = +2

Query: 143  DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTES-V 319
            +ND +VTQ+S GG   +++AK L+ YLED++GLV+RCR+KTS TP +S PNFEI+  + +
Sbjct: 7    ENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAADI 66

Query: 320  QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 499
            +   +Y KVEPHAFVHFA  +S    ++      L   +Q +K S GP+N + +++ RRT
Sbjct: 67   ETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRRRT 126

Query: 500  TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 679
              PFK+  V +EIG L   DEF V W+GP  G DF+VDPF+GTC+  F RDTAFS +G  
Sbjct: 127  KIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKGLN 186

Query: 680  RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 859
            + AVI C+FK EF  REI E K Y +    V+LL+L S P + YRTADDDI++SV +DLL
Sbjct: 187  KHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFDLL 246

Query: 860  DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 1039
            DDDDPWIRTTDF P+GAIGR N YR+ + PR+  +L+KA+ +L+ERRV  +   +  R+Q
Sbjct: 247  DDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPRIQ 306

Query: 1040 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 1219
            DEP FG PM D  F   Y++ +SF ++F+VNAV+HKGI+NQHQ+S++FFDLLR Q EE N
Sbjct: 307  DEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEEIN 366

Query: 1220 LVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCL 1399
            + ALKH+ SYK P +DA + L  VQ+WL++NPKL++ P+++DDI EVRRL+ITP+KAYCL
Sbjct: 367  VAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCL 426

Query: 1400 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTT 1579
            PPEVELSNRVLRKY+ ++DRFLRVTFMDE MQT+N NV+  Y APIV+E+T+N  PQKT 
Sbjct: 427  PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTK 486

Query: 1580 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 1759
            ++ R+R IL  GF+LCGRKYSFLAFSSNQLRDRSAWFFAEDK+ ++  IKNWMG+FTNRN
Sbjct: 487  VYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTNRN 546

Query: 1760 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 1939
            VAKCAARMGQCFSSTYATVEVP +Q NH+L D+ERN YVFSDGIG I+ DLA EVAEKL+
Sbjct: 547  VAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLK 606

Query: 1940 MHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 2119
            +  + P A+QIRY G KGVVACWP+  +G RL LR SM KF S+HTTLEICSWTR QPGF
Sbjct: 607  LDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGF 666

Query: 2120 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 2299
            LNRQI+TLLSAL V D+ FW MQE MVS+L  +L D D+AFDVLT SC + GN+AA+ML+
Sbjct: 667  LNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLS 726

Query: 2300 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 2479
            AGF+P  EPHLRGML+ I+ +QL  LREK+RIFV SGRWLMGCLDELGVLE GQCF+QVS
Sbjct: 727  AGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVS 786

Query: 2480 TPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCL 2659
            TPSLE+CFAKHGS F +T KNL+VI G VV+AKNPCLHPGD+RILEAVD PGL HLHDCL
Sbjct: 787  TPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCL 846

Query: 2660 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 2839
            +FPQKG RPH +EASGSDLDGDLYFVTWD+NLIPP KKSW PM+YEP E K   R VT  
Sbjct: 847  VFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQ 906

Query: 2840 DIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 3019
            D+IEFF +NMVNE+LG ICNAHVVH+D S+YGA DE C+KLAELAA+AVDFPKTGKIV+M
Sbjct: 907  DLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTM 966

Query: 3020 PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRE 3199
            PP LKPKLYPDFMGK++ QSYKS KILG+LYR+I DAY++D   S +  +   ++ YD +
Sbjct: 967  PPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVKYDMD 1026

Query: 3200 LEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKE 3379
            LE+  + DFIADAW  KCSYD QL GL+ QYK+  E+E+VTGH+WSMPK +S+KQGEL+E
Sbjct: 1027 LEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQGELQE 1086

Query: 3380 RLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQ 3559
            RLKH+YSAL+K++R+ FE M   F+ L D +KN  YEQKASAWYQV+YH  WV+KS +L 
Sbjct: 1087 RLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKSLDLH 1146

Query: 3560 KVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712
              D PG  V+LSFAWIAADYL RIKI++R++ N    KPI+ L +YLAD+I
Sbjct: 1147 GPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197