BLASTX nr result
ID: Mentha28_contig00000060
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Mentha28_contig00000060 (4029 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza] 2083 0.0 gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus... 1860 0.0 gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 1732 0.0 emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1731 0.0 gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1729 0.0 gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 1727 0.0 dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1727 0.0 gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 1721 0.0 ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1703 0.0 ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco... 1696 0.0 ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 1670 0.0 ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca... 1662 0.0 ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 1658 0.0 ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 1655 0.0 ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 1654 0.0 gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 1643 0.0 ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1627 0.0 gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu... 1622 0.0 ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun... 1618 0.0 ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1603 0.0 >gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza] Length = 1195 Score = 2083 bits (5398), Expect = 0.0 Identities = 1015/1195 (84%), Positives = 1103/1195 (92%), Gaps = 2/1195 (0%) Frame = +2 Query: 134 KIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTE 313 ++GDNDMIVTQIS+GGL+ ++AK+L DYLED VGLVWRCRVKTSSTPQDSYPN+EI+TE Sbjct: 3 QVGDNDMIVTQISIGGLEGYVTAKLLSDYLEDNVGLVWRCRVKTSSTPQDSYPNYEIDTE 62 Query: 314 SVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMR 493 +VQRK EYEKVEPHAFVHFA+A+S+A A++LS +G L+LG I+KV GPQNPYRL E R Sbjct: 63 NVQRKGEYEKVEPHAFVHFAVAQSSASAMKLSGAGDLVLGRHILKVGLGPQNPYRLRERR 122 Query: 494 RTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRG 673 RTTTP+K+PGV++EIG ++SRDEFVVGWRGP+TG DFLVDPFNGTCQI FT+DTAFSI+G Sbjct: 123 RTTTPYKVPGVTVEIGAMKSRDEFVVGWRGPRTGLDFLVDPFNGTCQILFTKDTAFSIKG 182 Query: 674 EARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYD 853 EARPAVIKCNFK+EFVPREIN+IKRYKDF+S+V+L QLAS P LYYRTADDDIEESVP+D Sbjct: 183 EARPAVIKCNFKMEFVPREINQIKRYKDFSSVVVLFQLASSPLLYYRTADDDIEESVPFD 242 Query: 854 LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI--ER 1027 LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPR+ QLEKALG+LQ RRVP ER Sbjct: 243 LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRHLSQLEKALGYLQNRRVPVENGSPQER 302 Query: 1028 LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQN 1207 LRVQDEPDFGVPM DPFFCFQYKEGL+FKVMFMVNAVVHKGIINQHQ S FFDLLR Q Sbjct: 303 LRVQDEPDFGVPMADPFFCFQYKEGLNFKVMFMVNAVVHKGIINQHQTSKQFFDLLRSQP 362 Query: 1208 EEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSK 1387 EE NLVALKHIYSYKRP YDA RALD+V KWL+KNPKLLQ+P+QMDDIVEVRRL+ITPSK Sbjct: 363 EELNLVALKHIYSYKRPVYDAYRALDSVTKWLIKNPKLLQRPDQMDDIVEVRRLVITPSK 422 Query: 1388 AYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSP 1567 AYCLPPEVELSNRVLR Y++ISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVRE+T NL+P Sbjct: 423 AYCLPPEVELSNRVLRNYKNISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREITSNLNP 482 Query: 1568 QKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKF 1747 Q+TTMF+RVRDILY+GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ T+V IK WMGKF Sbjct: 483 QRTTMFKRVRDILYQGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRKTSVVCIKTWMGKF 542 Query: 1748 TNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVA 1927 TNRNVAKCAARMGQCFSSTYATVEVP +QAN K DVERN Y+FSDGIGMIS+DLAKEVA Sbjct: 543 TNRNVAKCAARMGQCFSSTYATVEVPSAQANSK-SDVERNGYIFSDGIGMISADLAKEVA 601 Query: 1928 EKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRF 2107 EKLQ+ T LPCA+QIRYAGYKGVVACWPA NG RLQLR SM+KFDS+HTTLEICSWTRF Sbjct: 602 EKLQLRTKLPCAYQIRYAGYKGVVACWPAENNGHRLQLRPSMKKFDSDHTTLEICSWTRF 661 Query: 2108 QPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAA 2287 QPGFLNRQIVTLLS+LEV D+ FWRMQELM++RLD ILEDPDMAFDVLT SC+D GNTAA Sbjct: 662 QPGFLNRQIVTLLSSLEVCDENFWRMQELMIARLDGILEDPDMAFDVLTASCSDQGNTAA 721 Query: 2288 MMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 2467 MMLAAGFR EPHLRGML SIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF Sbjct: 722 MMLAAGFRSHTEPHLRGMLMSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 781 Query: 2468 IQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHL 2647 IQVS PSLEDCFA HGSEFS+TKK+LEVI GLVVIAKNPCLHPGDVRILEAVDV GL HL Sbjct: 782 IQVSKPSLEDCFANHGSEFSETKKDLEVIKGLVVIAKNPCLHPGDVRILEAVDVRGLHHL 841 Query: 2648 HDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRG 2827 +DCL+FPQKGERPH NEASGSDLDGDLYFVTWDD LIPPSK+SW PMDYEPGEVK KPR Sbjct: 842 YDCLVFPQKGERPHANEASGSDLDGDLYFVTWDDTLIPPSKRSWLPMDYEPGEVKLKPRE 901 Query: 2828 VTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGK 3007 VTHSDIIEFFTKNMVNESLGTICNAHVVHAD S+YGALDEKCIKLAELAAIAVDFPKTGK Sbjct: 902 VTHSDIIEFFTKNMVNESLGTICNAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGK 961 Query: 3008 IVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIF 3187 IV+MPP+LKP++YPDFMGKEELQSYKSTKILGKLYRR+RDAYN DYE S QLTYP++ I Sbjct: 962 IVTMPPDLKPQMYPDFMGKEELQSYKSTKILGKLYRRVRDAYNLDYEASSQLTYPAD-IS 1020 Query: 3188 YDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQG 3367 YD+ELE+TGS+DFIADAWSCKCSYDGQL GLLGQYKVNSEDEVVTGHIWSMPK SSKKQG Sbjct: 1021 YDQELEVTGSKDFIADAWSCKCSYDGQLAGLLGQYKVNSEDEVVTGHIWSMPKFSSKKQG 1080 Query: 3368 ELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKS 3547 ELKERLKHAY+ALRKDYRKVFECM P FDQL DHEKNV YEQKASAWYQV+Y ++WV+KS Sbjct: 1081 ELKERLKHAYNALRKDYRKVFECMAPGFDQLPDHEKNVLYEQKASAWYQVTYQDNWVKKS 1140 Query: 3548 KELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 KELQ++DD GKTVLLSFAWIAADYL RIKIR+R+MENAIS KPIDSLGRYLADKI Sbjct: 1141 KELQELDDSGKTVLLSFAWIAADYLARIKIRRRRMENAISGKPIDSLGRYLADKI 1195 >gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus] Length = 1196 Score = 1860 bits (4819), Expect = 0.0 Identities = 897/1199 (74%), Positives = 1036/1199 (86%), Gaps = 3/1199 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 MG +I D +MIVTQIS+GGL N++AKML+DY ED +GLVWRCR+KTSSTP +SYPN+EI Sbjct: 1 MGSEISDREMIVTQISVGGLGSNVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEI 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 + +S ++ +Y K++P+AFVHF +A+SA +A+E + G L +++KVS GPQNPYRLS Sbjct: 61 DIDSAKQSDDYVKIQPYAFVHFVVAESANKAVEAASRGDLRFAGKLLKVSLGPQNPYRLS 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 E RRTTTP+K+ +EIG LRSR+E VVGWRGP++G DFLVDPF+GTC++H RDTAF Sbjct: 121 ERRRTTTPYKLSDAFVEIGSLRSREELVVGWRGPRSGVDFLVDPFSGTCKLHIKRDTAFC 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 +GEAR A+IKC+F+IEF PREI EIK Y+DF+S++IL+QLAS P +YYRTADDDIEE Sbjct: 181 FKGEARSAIIKCDFRIEFFPREIIEIKHYRDFSSLIILIQLASSPLIYYRTADDDIEEPA 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI- 1021 DLLDDDDPWIRTTDF GA GR NTYRISVRP N L KAL +L++RRVP + + Sbjct: 241 TCDLLDDDDPWIRTTDFTSGGAFGRCNTYRISVRPHNGPHLLKALDYLRKRRVPVLDERT 300 Query: 1022 -ERLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198 +RL VQDEPDFG+P+ DPF C QYKEG+SFKVMF++NAV+HKGIINQHQ+S+ D+ R Sbjct: 301 RQRLVVQDEPDFGMPVLDPFLCIQYKEGISFKVMFLLNAVMHKGIINQHQISEQLLDMFR 360 Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378 RQ E+ N VALKH+ SYKRP YDA +A++ VQ+WL+KNPKLL++P MDDIVEVRRLIIT Sbjct: 361 RQPEDVNTVALKHMCSYKRPVYDAFKAVETVQRWLLKNPKLLERPRGMDDIVEVRRLIIT 420 Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558 P+KAYCLPPEVELSNRVLR Y++++DRFLRVTF DEAM TLNKN LTYY P+VR +T + Sbjct: 421 PAKAYCLPPEVELSNRVLRHYKAVADRFLRVTFTDEAMSTLNKNALTYYVGPMVRGITSS 480 Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738 +PQ+TT+F+R++DIL+ GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK V +IKNWM Sbjct: 481 SNPQRTTIFKRIKDILHSGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKDIGVANIKNWM 540 Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918 G+FTNRNVAKCAARMGQCFSSTYATVEVP Q N KL D+ERN+YVFSDGIGM+S+DLA Sbjct: 541 GRFTNRNVAKCAARMGQCFSSTYATVEVPSKQVNSKLPDIERNDYVFSDGIGMLSADLAM 600 Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098 EVAEKLQ+ TNLP A+QIRYAGYKGVVACWPA +G RL LR SM+KFDSNHT LEICSW Sbjct: 601 EVAEKLQLTTNLPSAYQIRYAGYKGVVACWPAQSDGFRLSLRKSMKKFDSNHTVLEICSW 660 Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278 TRFQPGFLNRQI+TLLSALEV D+ FWRMQE M+SRL+ +LED D AFDVLT SCTD GN Sbjct: 661 TRFQPGFLNRQIITLLSALEVGDEIFWRMQETMISRLNQMLEDTDTAFDVLTSSCTDQGN 720 Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458 TAA+ML+AGF+P EPHLRGML+SIRV+QLGDLRE++RIFV SGRWLMGCLDELGVLE+G Sbjct: 721 TAAIMLSAGFKPQTEPHLRGMLTSIRVAQLGDLRERARIFVPSGRWLMGCLDELGVLEHG 780 Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638 QCFIQVS PSLEDCF KHGSEFS KK LEVI GLV IAKNPCLHPGDVRILEAVD PGL Sbjct: 781 QCFIQVSNPSLEDCFVKHGSEFSGAKKKLEVIKGLVAIAKNPCLHPGDVRILEAVDCPGL 840 Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818 HL+DCL+FPQKGERPH NEASGSDLDGDLYFVTWD+NL+PPSK+SW PM+Y PGEVK+ Sbjct: 841 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLMPPSKRSWTPMEYAPGEVKQL 900 Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998 PR V H+DIIEFFTKNMVNESLG ICNAHVVHAD+S+YGALDEKCIKLAELAAIAVDFPK Sbjct: 901 PREVKHTDIIEFFTKNMVNESLGAICNAHVVHADSSEYGALDEKCIKLAELAAIAVDFPK 960 Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178 TGKIV+MP ELKPKLYPDFMGK+E Q+YKS+KILGKLYR+I+D+ N DYE S + T S Sbjct: 961 TGKIVTMPAELKPKLYPDFMGKDEFQTYKSSKILGKLYRKIKDS-NYDYEESSENT--SV 1017 Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358 NI YD+ELEI GS FI DAW+CKCSYDGQL GLLGQYKVNSE+EVVTGHIWSMPK SSK Sbjct: 1018 NIAYDQELEIAGSESFITDAWNCKCSYDGQLTGLLGQYKVNSEEEVVTGHIWSMPKYSSK 1077 Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538 KQGELKERLKHAYS LRKD+RKVFE M +FDQLSD EKN +E+KASAWYQV+Y+ESWV Sbjct: 1078 KQGELKERLKHAYSTLRKDFRKVFESMDAEFDQLSDDEKNTMFERKASAWYQVTYNESWV 1137 Query: 3539 EKSKELQKVDDP-GKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 +KSK+LQ VDD GKTV+LSFAWIAADYL RIKIR+R+MENAIS KPIDSLGRYLADKI Sbjct: 1138 KKSKDLQVVDDEVGKTVMLSFAWIAADYLARIKIRRRRMENAISMKPIDSLGRYLADKI 1196 >gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] Length = 1197 Score = 1733 bits (4487), Expect = 0.0 Identities = 848/1198 (70%), Positives = 990/1198 (82%), Gaps = 2/1198 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 MG + + D++VTQIS+GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP F++ Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 + E VQR +YEKV PHAFVHFA ++SA AL + L+LG + + VS GP+NPYRL+ Sbjct: 61 DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 + RRTT PFK VSIE+GVL S+D+FVVGWRGP+TG DFLVDPFNG C+I FT+DTAFS Sbjct: 121 QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VILLQLAS P ++YRTADDDIEESV Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024 +DLLDDDD WIRTTD SGAIGR NTYRIS+RPRN EKA+ + RVP V Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300 Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198 R LRV+DEPDFGV M DPFFCFQ EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359 Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378 EE NL ALKH++SYK P DA++ L ++KWL+KNPKLL++ ++DDIVEVRRL+IT Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419 Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558 P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479 Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738 +PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539 Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918 G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599 Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098 EVAEKL + N P A+QIRYAG KGVVACWP +G RL LR SM+KFDSNHT LEICSW Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659 Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278 TRFQPGFLNRQIVTLLS+L+V+D FW MQ+ M+S LD +L D D+AFDV+T SC + GN Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719 Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458 TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779 Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638 QCFIQVS+PSLE+CF KHG +FS KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVPGL Sbjct: 780 QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839 Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818 HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899 Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998 R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959 Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178 TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D + + E S L Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019 Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358 +I YD LEI GS FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079 Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538 KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN YE+KASAWYQV+Y+ WV Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139 Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 +S ELQ D TV+LSFAWIAADYL RIKIR R ++ + S+KPI+SLGRYL D I Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197 >emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 1731 bits (4483), Expect = 0.0 Identities = 846/1198 (70%), Positives = 992/1198 (82%), Gaps = 2/1198 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 MG + + D++VTQIS+GG D +++AKML +YLE++VG VWRCR+K S+TP DSYP ++I Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 + E V R +YEKV PHAFVHFA ++SA AL + L+LG + + VS GP+NPYRL+ Sbjct: 61 DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 + RRTT PFK VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VIL QLAS P ++YRTADDDIEESV Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024 +DLLDDDD WIRTTD SGAIGR NTYRIS+RPRN EKA+ + RRVP V Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300 Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198 R LRV+DEPDFGV M DPFFCFQ EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359 Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378 + EE NL ALKH++SYK P DA++ L +QKWL+KNPKLL++ ++DDIVEVRRL+IT Sbjct: 360 SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419 Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558 P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479 Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738 +PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539 Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918 G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599 Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098 EVAEKL ++ N P A+QIRYAGYKGVVACWP +G L LR SM+KFDSNHT LEICSW Sbjct: 600 EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659 Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278 TRFQPGFLNRQIVTLLS+L+V+D FW MQ+ M+S LD +L D D+AFDV+T SC + GN Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719 Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458 TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779 Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638 QCFIQVS+PSLE+CF KHG +FS KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L Sbjct: 780 QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839 Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818 HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899 Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998 R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959 Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178 TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D + + E S L + Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019 Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358 +I YD L I GS FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079 Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538 KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN YE+KASAWYQV+Y+ WV Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139 Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 +S ELQ D TV+LSFAWIAADYL RIKIR R ++ + S+KPI+SLGRYL DKI Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197 >gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 1729 bits (4477), Expect = 0.0 Identities = 844/1198 (70%), Positives = 989/1198 (82%), Gaps = 2/1198 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 MG + + +++VTQIS+GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP ++I Sbjct: 1 MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 + E VQR YEKV PHAFVHFA ++SA AL + L+LG + + VS GP+NPYRL+ Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 + RRTT PFK VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VIL QLAS P ++YRTADDDIEESV Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024 +DLLDDDD WIRTTD SGAIGR NTYRIS+RPRN EKA+ + RRVP V Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300 Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198 R LRV+DEPDFGV M DPFFCFQ EG+SF+V+F+VNAV+HKGI+NQHQM++ FF LLR Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359 Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378 EE N ALKH++SYK P DA++ L +QKWL+KNPKLL + ++DDIVEVRRL+IT Sbjct: 360 SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419 Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558 P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479 Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738 +PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539 Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918 G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599 Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098 EVAEKL + N P A+QIRYAG KGVVACWP +G RL LR SM+KFDSNHT LEICSW Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659 Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278 TRFQPGFLNRQIVTLLS+L+V+D FW MQ+ M+S LD +L D D+AFDV+T SC + GN Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719 Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458 TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779 Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638 QCFIQVS+PSLE+CF KHG +FS KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L Sbjct: 780 QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839 Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818 HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899 Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998 R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959 Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178 TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D + + E S L + Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019 Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358 +I YD LEI GS FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTG+IWSMPK ++K Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAK 1079 Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538 KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN YE+KASAWYQV+YH WV Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139 Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 +S ELQ D TV+LSFAWIAADYL RIKIR R+++ + S+KPI+SLGRYL D I Sbjct: 1140 ARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197 >gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] Length = 1197 Score = 1727 bits (4474), Expect = 0.0 Identities = 845/1198 (70%), Positives = 987/1198 (82%), Gaps = 2/1198 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 MG + + +++VTQIS+GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP ++I Sbjct: 1 MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 + E VQR YEKV PHAFVHFA ++SA AL + L+LG + + VS GP+NPYRL+ Sbjct: 61 DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 + RRTT PFK VS+E+GVL S+ +FVVGWRGP+TG DFLVDPFNGTC+I FT+DT FS Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 RGEAR A+IKCNFKIEF+ REINEIK+ KDF S+VILLQLAS P ++YRTADDDIEESV Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024 +DLLDDDD WIRTTD SGAIGR NTYRIS+RPRN EKA+ + RVP V Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300 Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198 R LRV+DEPDFGV M DPFFCFQ EG+SFKV+F+ NAV+HKGI+NQHQM + FF LLR Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359 Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378 EE NL ALKH++SYK P DA++ L +QKWL+KNPKLL++ ++DDIVEVRRL+IT Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419 Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558 P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479 Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738 +PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539 Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918 G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599 Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098 EVAEKL + N P A+QIRYAG KGVVACWP +G RL LR SM+KFDSNHT LEICSW Sbjct: 600 EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659 Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278 TRFQPGFLNRQIVTLLS+L+V+D FW MQ+ M++ LD +L D D+AFDV+T SC + GN Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719 Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458 TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779 Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638 QCFIQVS+PSLE+CF KHGS+FS KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L Sbjct: 780 QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839 Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818 HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+N+IPPSKKSW PM+YEP EVK+ Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899 Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998 R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959 Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178 TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D + + E S L + Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019 Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358 +I YD LEI GS FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079 Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538 KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN YE+KASAWYQV+YH WV Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139 Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 +S ELQ D TV+LSFAWIAADYL RIKIR R + + S+KPI+SLGRYLADKI Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197 >dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 1727 bits (4473), Expect = 0.0 Identities = 845/1198 (70%), Positives = 987/1198 (82%), Gaps = 2/1198 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 MG + + +++VTQIS GG D +++AKML +YLE++VG VWRCR+K SSTP DSYP ++I Sbjct: 1 MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 + E VQR YEKV PHAFVHFA ++SA AL + L+LG + + VS GP+NPYRL+ Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 + RRTT PFK VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNGTC+I FT+DTAFS Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 RGEAR A+IKCNFKIEF+ REINEIK+ KDFTS+VILLQLAS P ++YRTADDDIEESV Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024 +DLLDDDD WIRTTD SGAIGR NTYRIS+RPRN EKA+ + RVP V Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300 Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198 R LRV+DEPDFGV M DPFFCFQ EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359 Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378 + EE N ALKH++SYK P DA++ L +QKWL+KNPKLL + ++DDIVEVRRL+IT Sbjct: 360 SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419 Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558 P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479 Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738 +PQ+T +FQRV+ IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539 Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918 G+F+NRNVAKCAARMGQCFSSTYATVEVP + N +L D+ERN YVFSDGIGMIS+DLA Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599 Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098 EVAEKL + N P A+QIRYAG KGVVACWP +G RL LR SM+KFDSNHT LEICSW Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659 Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278 TRFQPGFLNRQIVTLLS+L+V+D FW MQ+ M+S LD +L D D+AFDV+T SC + GN Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719 Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458 TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779 Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638 QCFIQVS+PSLE+CF KHG +FS K+NL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L Sbjct: 780 QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839 Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818 HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899 Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998 R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959 Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178 TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D + + E S L + Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019 Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358 +I YD LEI GS FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079 Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538 KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN YE+KASAWYQV+YH WV Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139 Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 +S ELQ D TV+LSFAWIAADYL RIKIR R+++ + S+KPI+SLGRYL D I Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197 >gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] Length = 1197 Score = 1721 bits (4457), Expect = 0.0 Identities = 839/1198 (70%), Positives = 987/1198 (82%), Gaps = 2/1198 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 MG + + D++VTQIS+GG D +++AKML +YLE++VG VWRCR+K S+TP DSYP +++ Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 + V R +YEKV PHAFVHFA ++SA AL + L+LG + + VS GP+NPYRL+ Sbjct: 61 DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 + RRTT PFK VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNG C+I FT+DTAFS Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 RGEA+ A+IKCNFKIEF+ REINEIK++KDFTS+VILLQLAS P ++YRTADDDIEESV Sbjct: 181 FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024 +DLLDDDD WIRTTD SGAIGR NTYRIS+RPRN EKA+ + RVP V Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300 Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198 R LRV+DEPDFGV M DPFFCFQ EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359 Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378 EE NL ALKH++SYK P DA++ L +QKWL+KNPKLL++ ++DDIVEVRRL+IT Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419 Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558 P+KAYCLPP VELSNRVLR Y+ ++DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479 Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738 +PQ+T +FQRV+ IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539 Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918 G+F+NRNVAKCAARMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599 Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098 EVAEKL + N P A+QIRYAG KGVVACWP +G L LR SM+KFDSNHT LEICSW Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659 Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278 TRFQPGFLNRQIVTLLS+L+V+D FW MQ+ M+S L+ +L D D+AFDV+T SC + GN Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719 Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458 TAA+ML+AGF+P +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE G Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779 Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638 QCFIQVS+PSLE+CF KHG +FS KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVPGL Sbjct: 780 QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839 Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818 HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+ Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899 Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998 R V H DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959 Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178 TGK+V+MP +LKPK+YPDFMGKEE QSYKS KILGKLYR+++D + + E S L Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019 Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358 +I YD LEI GS F+ DAW+CKCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079 Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538 KQGELKERLKHAY+ LRK++R VFE M PDFD L D EKN YE+KASAWYQV+Y+ WV Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139 Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 +S ELQ D TV+LSFAWIAADYL RI IR R ++ + S+KPI+SLGRYL D I Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197 >ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Solanum tuberosum] Length = 1198 Score = 1703 bits (4411), Expect = 0.0 Identities = 829/1198 (69%), Positives = 981/1198 (81%), Gaps = 2/1198 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 MG + + D++VTQIS+GG +++AKML + LED+VG VWRCR+KTSSTP DSYP ++I Sbjct: 1 MGSEGSEKDLVVTQISVGGFSNDVNAKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDI 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 + E+V+R Y KVEPHAFVHFA ++SA AL + L L + +KVS GP+NP+ ++ Sbjct: 61 DVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENPFNMN 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 + RRT PFK V +EIGVL S D+FVVGWRGP +G +FLVDPFNGTC+I FTRDTAF Sbjct: 121 KRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFC 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 +GE + AVIKCNFKIEF+ REINEI KDF S+V+LLQL S P ++YRTADDDIEESV Sbjct: 181 FKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESV 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024 +DLLDDDD WIRTTD SGAIGR NTYRIS+RPRN L+KA+ + +E RVP V Sbjct: 241 AFDLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGN 300 Query: 1025 R--LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLR 1198 R LRV+DEPDFGV + +PFFCFQ EG+SFKV+F+VNAV+ KGI+NQHQM+ FF LLR Sbjct: 301 RQMLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLR 360 Query: 1199 RQNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIIT 1378 + E NL ALKHI+SYKRP DA++ L +VQKWL KNP LL++ Q+DD+VEVRRL+IT Sbjct: 361 KHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVIT 420 Query: 1379 PSKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKN 1558 P+KAYCLPP VELSNRVLRKY+ +SDRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T + Sbjct: 421 PTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSS 480 Query: 1559 LSPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWM 1738 +PQ+T +FQRV+ IL KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE V +I NWM Sbjct: 481 SNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWM 540 Query: 1739 GKFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAK 1918 GKF NRNVAKCAARMGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+S+DL+ Sbjct: 541 GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSI 600 Query: 1919 EVAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSW 2098 EVA KLQ+ N PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSW Sbjct: 601 EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 660 Query: 2099 TRFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGN 2278 TR QPGFLNRQI+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GN Sbjct: 661 TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 720 Query: 2279 TAAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYG 2458 TAA+ML+AGF+P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDEL LE G Sbjct: 721 TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQG 780 Query: 2459 QCFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGL 2638 QCFIQVS+PSLE CF KHG +FS+ KKNL+VI GLVVIAKNPCLHPGDVRILEAVDVPGL Sbjct: 781 QCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 840 Query: 2639 KHLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEK 2818 HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PMDY P E K+ Sbjct: 841 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQL 900 Query: 2819 PRGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPK 2998 R V H+DII+FF+KNMV ESLG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPK Sbjct: 901 GRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 960 Query: 2999 TGKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE 3178 TGK+V+MP +LKPK+YPDFMGKE Q+Y+S KILGKLYR++ D Y+ + S L + + Sbjct: 961 TGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPK 1020 Query: 3179 NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSK 3358 +I YD +EI G DFI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+K Sbjct: 1021 DIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1080 Query: 3359 KQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWV 3538 KQGELKERLKHAY+ LRK++R VFE M PDFD L EKN YE+KASAWY+V+YH WV Sbjct: 1081 KQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWV 1140 Query: 3539 EKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 +S ELQ D V+LSFAWIAADY+ RIKIRQR M+N+ S+KPI+ LGRYL +KI Sbjct: 1141 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198 >ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum] gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum] Length = 1197 Score = 1696 bits (4392), Expect = 0.0 Identities = 827/1197 (69%), Positives = 977/1197 (81%), Gaps = 1/1197 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 MG + D +++VTQIS+GG +++AKML +YLE++VG VWRCR+KTSSTP DSYP ++I Sbjct: 1 MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 + E V+R Y KVEPHAFVHFA ++SA AL + L L + +KVS GP+N + ++ Sbjct: 61 DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 E RRT P+K V +EIGVL S D+FVVGWRGP +G +FLVDPFNG C+I FTRDTAF Sbjct: 121 ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 +GE + AVIKCNFKIEF+ REINEI KDF+S+V+LLQLAS P ++YRTADDDIEESV Sbjct: 181 FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024 +DLLDDDD WIRTTD SGAIGR NTYR+S+RPRN +KA+ + +E RVP V E Sbjct: 241 AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQGE 300 Query: 1025 R-LRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRR 1201 + LRV++EPDFG + +PFFCFQ EG+SFKV+F+VNAV+HKGI+NQHQM+ FF LLR+ Sbjct: 301 QMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRK 360 Query: 1202 QNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITP 1381 E NL ALKHI+SYKRP DA+R L +VQKWL NP LL++ Q+DD+VEVRRL+ITP Sbjct: 361 HQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITP 420 Query: 1382 SKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNL 1561 +KAYCLPP VELSNRVLRKY+ ISDRFLRVTFMDE M+ LN+N LTYYAA IVRE+T + Sbjct: 421 TKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSS 480 Query: 1562 SPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMG 1741 +PQ+T +FQRV+ I+ KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE V SI NWMG Sbjct: 481 NPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMG 540 Query: 1742 KFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKE 1921 KF NRNVAKCAARMGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+++DL+ E Sbjct: 541 KFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIE 600 Query: 1922 VAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWT 2101 VA KLQ+ N PCA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSWT Sbjct: 601 VAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWT 660 Query: 2102 RFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNT 2281 R QPGFLNRQI+TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GNT Sbjct: 661 RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNT 720 Query: 2282 AAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQ 2461 AA+ML+AGF+P +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDELG LE GQ Sbjct: 721 AAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQ 780 Query: 2462 CFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLK 2641 CFIQVS+PSLE CF KHG EFS+ KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVPGL Sbjct: 781 CFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH 840 Query: 2642 HLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKP 2821 HL+DCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y P E K+ Sbjct: 841 HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLG 900 Query: 2822 RGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKT 3001 R V H+DII+FF KNMV ESLG ICNAHVVHAD S++GA+DEKC+KLAELAA+AVDFPKT Sbjct: 901 RQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKT 960 Query: 3002 GKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSEN 3181 GK+V+MP +LKPK+YPDFMGKE QSY+S KILGKLYR++ D Y+ + S L Y ++ Sbjct: 961 GKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKD 1020 Query: 3182 IFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKK 3361 I YD LEI G DFI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KK Sbjct: 1021 IPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKK 1080 Query: 3362 QGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVE 3541 QGELKERLKHAY+ LRK++R VFE M PDFD L EKN YE+KA AWY+V+YH WV Sbjct: 1081 QGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWVT 1140 Query: 3542 KSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 +S ELQ D V+LSFAWIAADY+ RIKIRQR M+N S+KPIDSLGRYL +KI Sbjct: 1141 RSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197 >ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] Length = 1198 Score = 1670 bits (4326), Expect = 0.0 Identities = 794/1190 (66%), Positives = 973/1190 (81%), Gaps = 2/1190 (0%) Frame = +2 Query: 149 DMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 325 + +VTQ+SLGG D +++AK L++YLE ++GLVWRCR+KTS TP +SYPNFEI + + R Sbjct: 9 ETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITR 68 Query: 326 KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 505 +Y +VEPHAFVHFAL +SA A++ ++ L L ++ +K S GP+NP+ L++ RR TT Sbjct: 69 TEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTT 128 Query: 506 PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 685 PFK+ GV +EIG L SRDEF VGWRGP TG DFLVDPF+GTC+ F+R+TAFS + A Sbjct: 129 PFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEH 188 Query: 686 AVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDD 865 AVIKC+FK+EF+ R+INEIK+Y + + +V+LLQLAS P+++YRTADDDIE SVP+DLLDD Sbjct: 189 AVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDD 248 Query: 866 DDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDE 1045 DDPWIRTTDF SGAIGR ++YR+S+ PR+ +L KA+ FL+ERRV +R++DE Sbjct: 249 DDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDE 308 Query: 1046 PDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLV 1225 PDFG+PM DPFFC +KEG++F V+F+VNAV+HKGI NQHQ+S++FFDLLR Q E N+ Sbjct: 309 PDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVA 368 Query: 1226 ALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCLPP 1405 ALKHIY Y+RP +DA + L Q+WL+KNPK + +++DDI E+RRL+ITP+KAYCLPP Sbjct: 369 ALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPP 428 Query: 1406 EVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMF 1585 EVELSNRVLRKY+ ++DRFLRVTFMDE +QT+N N L Y+AAPIVR +T PQKT +F Sbjct: 429 EVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIF 488 Query: 1586 QRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVA 1765 +RVR IL +GFYLCGR+YSFLAFSSNQLRDRSAWFFAED++ V +IK+WMGKFTN+N+A Sbjct: 489 KRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIA 548 Query: 1766 KCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMH 1945 KCAARMGQCFSSTYAT+EVPP + N L D++RN Y FSDGIGMI+ DLA+EVAEKL+ Sbjct: 549 KCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKFD 608 Query: 1946 TNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLN 2125 + PCA+QIRYAG KGVVACWP +G RL LR+SM KF SNHT LEICSWTRFQPGFLN Sbjct: 609 FDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLN 668 Query: 2126 RQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAG 2305 RQI+TLLSAL V D FW+MQELMVS+L+ +L D D+AFDVLT SC + GN AA+ML+AG Sbjct: 669 RQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAG 728 Query: 2306 FRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTP 2485 F+P EPHLRGML+ +R +QL LREK+RIFV SGRWLMGCLDELGVLE GQCFIQVS Sbjct: 729 FKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNS 788 Query: 2486 SLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIF 2665 LE+CF KHGS+FS+TKKNL+V+ G VVIAKNPCLHPGD+RILEAVD PGL HL+DCL+F Sbjct: 789 YLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVF 848 Query: 2666 PQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDI 2845 PQKGERPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+ E K+ R V H DI Sbjct: 849 PQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDI 908 Query: 2846 IEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPP 3025 +EFF KNM NE+LG ICNAHVV AD S+YGALDEKC+ LAELAA AVDFPKTGKIVSMP Sbjct: 909 VEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPS 968 Query: 3026 ELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAY-NQDYEPSPQLTYPSENIFYDREL 3202 +LKPK+YPDFMGKEE QSYKS KILG+LYR+I+DAY + D S +L + +I YD +L Sbjct: 969 DLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDL 1028 Query: 3203 EITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKER 3382 E+ G+ DFI+DAW KCSYDGQL GLL QYKV E+EVVTGH+WSMPK SS+KQG+LKER Sbjct: 1029 EVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKER 1088 Query: 3383 LKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQK 3562 LKH+Y+ L++++R+VFE M DF QL D EKN+ YE+KASAWYQV+YH W++KS ELQ Sbjct: 1089 LKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQD 1148 Query: 3563 VDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 D G +V+LSFAWIAADYL RIKIR ++ N S+KP++SL +YLAD++ Sbjct: 1149 SDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198 >ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] Length = 1197 Score = 1662 bits (4305), Expect = 0.0 Identities = 800/1191 (67%), Positives = 963/1191 (80%), Gaps = 1/1191 (0%) Frame = +2 Query: 143 DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESV 319 + D +VTQ+S+GG ++++AK LM+Y +++VG+VWRCR+KTS TP +SYPNFEI ++ + Sbjct: 7 EKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVI 66 Query: 320 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 499 QR +Y+KVEPHAFVHFA +A A++ + L+ +Q++KVS GP+NPY L+ RR Sbjct: 67 QRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRN 126 Query: 500 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 679 TTPFK+ V ++IG + SRDEF VGWRGP G DFLVDPF+GTC+ F+RDTAFS +G Sbjct: 127 TTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTT 186 Query: 680 RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 859 AVIKC+FK+EF+ R+INEIK+Y + + +V+ LQLAS P+++YRTADD+IEESVP+DLL Sbjct: 187 EYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLL 246 Query: 860 DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 1039 DDDD WIRTTDF PSGAIGR NTYR+ +RPR+ +L+KAL +L+E+RVP LR+ Sbjct: 247 DDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRIS 306 Query: 1040 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 1219 DEPDFG M DPF+C YKEG+ F++MF+VNAV+HKGI NQHQ+S++FF+LLR Q E N Sbjct: 307 DEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVN 366 Query: 1220 LVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCL 1399 + ALKHIYSY+RP +DA + L V WL++NP L + P+Q+DDIVE+RRL+ITP+KA+CL Sbjct: 367 VAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCL 426 Query: 1400 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTT 1579 PEVELSNRVLRKY+ ++DRFLRVTFMDE MQT+N NVLTYYAA IVR+VT QKT Sbjct: 427 LPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTG 486 Query: 1580 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 1759 +F+RVR IL GFYLCGRKYSFLAFS+NQLRD SAWFFAED T+V I WMGKFTNRN Sbjct: 487 VFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRN 546 Query: 1760 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 1939 +AKCAARMGQCFSSTYATVEVP ++ N L D+ERN YVFSDGIG I+ DLAKEVA+KL+ Sbjct: 547 IAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLK 606 Query: 1940 MHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 2119 + N PCA+QIRYAG KGVVACWP +G RL LR SM KF S+HTTLEICSWTRFQPGF Sbjct: 607 LDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGF 666 Query: 2120 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 2299 LNRQI+TLLS V D+ FW MQ MVS+L+ IL D D+AF+VLT SC++ GN AA+ML+ Sbjct: 667 LNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLS 726 Query: 2300 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 2479 AGF+P EPHLRG+L+ +R SQL LREK+RIFV SGRWLMG LDELGVLE GQCFIQVS Sbjct: 727 AGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVS 786 Query: 2480 TPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCL 2659 PS+E+CF KHGS F++TKKN EVI GLVVIAKNPCLHPGD+RILEAVD PGL HL+DCL Sbjct: 787 NPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 846 Query: 2660 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 2839 +FPQKGERPH NEASGSDLDGDLYFVTW+D LIPP KKSWPPM Y+PGE KE R V H Sbjct: 847 VFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHK 906 Query: 2840 DIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 3019 DII+FF KNMVNE LGTICNAHVVHAD S+YGALDEKCI LAELAA AVDFPKTGKIVSM Sbjct: 907 DIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSM 966 Query: 3020 PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRE 3199 P LKPKLYPDFMGKEE QSYKS KILG+LYR I+D Y++D S ++ S +I YD + Sbjct: 967 PANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINYDTD 1026 Query: 3200 LEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKE 3379 LE+TGS D+I DAW KCSYD QL+GLLGQYKV E+EVVTGHIWSMPK +S+K G+LKE Sbjct: 1027 LEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLKE 1086 Query: 3380 RLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQ 3559 +L H+Y ALRK++R++FE M + +QL++ E+N YE+KASAWYQV+YH WVEK ELQ Sbjct: 1087 KLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKLELQ 1146 Query: 3560 KVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 K D V+LSFAWIAADYL RIKIR + N SKP++SL +YLADKI Sbjct: 1147 KSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197 >ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] Length = 1200 Score = 1658 bits (4293), Expect = 0.0 Identities = 787/1192 (66%), Positives = 974/1192 (81%), Gaps = 4/1192 (0%) Frame = +2 Query: 149 DMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 325 + +VTQ+S+GG D +++AK L++YL+ +GLVWRCR+KTS TP +SYPNFEI + ++R Sbjct: 9 ETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIER 68 Query: 326 KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 505 +Y +V PHAFVHFAL +SA A+ S L L ++ +KVS GP+NP+ L++ RRTTT Sbjct: 69 TEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTT 128 Query: 506 PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 685 PFK+ V EIG L SRDEF VGWRGP +G DFLVDPF+GTC+ F+R+TAFS++ + Sbjct: 129 PFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEH 188 Query: 686 AVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDD 865 AVIKC+FK+EF+ R+INEI +Y + + +V+LLQLAS P ++YRTADDDIE VP+DLLDD Sbjct: 189 AVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDD 248 Query: 866 DDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE---RLRV 1036 DDPWIRTTDF SGAIGR ++YR+S+ PR+ +L KA+ +L+ERRV + + R+R+ Sbjct: 249 DDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRI 308 Query: 1037 QDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEF 1216 DEPDFG+PM DPFFC +KEG++F+V+F+VNAV+HKGI NQHQ+S++FFDLLR Q+ E Sbjct: 309 LDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEV 368 Query: 1217 NLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYC 1396 N+ ALKHI +Y+RP ++A R L VQ+WL+KNP L + P+Q+ D+VE+RRL+ITP+KAYC Sbjct: 369 NVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYC 428 Query: 1397 LPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKT 1576 LPPEVELSNRVLRKY+ ++DRFLRVTFMDE +Q +N NVL YY APIVR++T N PQKT Sbjct: 429 LPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKT 488 Query: 1577 TMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNR 1756 +F+RVR IL +GFYLCGR+YSFLAFS+NQLRD+SAWFF+E+++ +V +K+WMGKFTNR Sbjct: 489 RIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTNR 548 Query: 1757 NVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKL 1936 N+AKCAARMGQCFSSTYAT+EVPP + N L D+ERN YVFSDGIG+I+ DLA+EVAEKL Sbjct: 549 NIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKL 608 Query: 1937 QMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPG 2116 ++ + PCA+QIRYAG KGVVACWP +G RL LR SM KF SNHTTLEICSWTRFQPG Sbjct: 609 KLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPG 668 Query: 2117 FLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMML 2296 FLNRQI+TLLS L V D FW+MQE MVS+L+ + + D+AFDVLT SC D GN AA+ML Sbjct: 669 FLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIML 728 Query: 2297 AAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQV 2476 +AGF+P EPHLRGML+ +R +QL DLREK+RIFV SGRWLMGCLDELG+LE GQCFIQV Sbjct: 729 SAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQV 788 Query: 2477 STPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDC 2656 S SLE CF KHG++FS+ +KNL+VI G VVIAKNPCLHPGDVR+LEAVDVPGL HL+DC Sbjct: 789 SNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDC 848 Query: 2657 LIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTH 2836 L+FPQKGERPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+ E K R V H Sbjct: 849 LVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNH 908 Query: 2837 SDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVS 3016 DIIEFF KNMVN++LG ICNAHVVHAD S+YGA D+ C+ LAELAA AVDFPKTGK+VS Sbjct: 909 QDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVS 968 Query: 3017 MPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDR 3196 MPP LKPK+YPDFMGKEE QSYKS KILG+LYR+I+DAY++D S +L +I YD Sbjct: 969 MPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDIPYDS 1028 Query: 3197 ELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELK 3376 +LE+ G+ D+I+DAW KCSYDGQL GLL QYKV E+EVVTGHIWSMPK SS+KQGELK Sbjct: 1029 DLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELK 1088 Query: 3377 ERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKEL 3556 +RLKH+Y++L+K++R++FE M +F+QL D EKN YEQKASAWYQV YH WV+KS EL Sbjct: 1089 DRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLEL 1148 Query: 3557 QKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 Q D G +V+LSFAWIAADYL RIKIR R+ N S+KP++SL +YLAD++ Sbjct: 1149 QDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200 >ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis] gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis] Length = 1203 Score = 1655 bits (4285), Expect = 0.0 Identities = 797/1203 (66%), Positives = 963/1203 (80%), Gaps = 7/1203 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 M K + + +VTQ+S GG DK+++A+ L+ YL++++G VWRCR+KTS TP +SYPNFEI Sbjct: 1 METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60 Query: 305 -NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRL 481 +T +QR Y +VEPHAFVHFA SA A + L + +KVS GP+NP+ L Sbjct: 61 TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120 Query: 482 SEMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAF 661 ++ RRTT PFK+ V +EIG L SRDEF+VGWRGP +G DFLVDPF+G C+ FTRDTAF Sbjct: 121 NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180 Query: 662 SIRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEES 841 S +G AVI+C+FK+EF+ R+INEIK+Y D + +VILLQLAS P ++YRTADDDIE Sbjct: 181 SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240 Query: 842 VPYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI 1021 VP+DLLDDDDPWIRTTDF PSGAIGR N+YR+S+ PR+ +L++AL FL+ERRV Sbjct: 241 VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300 Query: 1022 ERLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRR 1201 L V EP++ +PM DPFFC ++EG+ F +MF+VNAV+HKGI NQHQ+SD+FFDLLR Sbjct: 301 RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360 Query: 1202 QNEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITP 1381 Q + N+ AL+HI SYK P +DA + L VQ+WL+KNPKL + +Q+DDIVE+RRL ITP Sbjct: 361 QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420 Query: 1382 SKAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNL 1561 ++AYCLPPEVELSNRVLR+Y+ I+D+FLRVTFMDE +QT+N N LTYY APIVR++T N Sbjct: 421 TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480 Query: 1562 SPQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMG 1741 QKT +F+RV+ IL GFYLCGRKYSFLAFSSNQLRDRSAWFFAED T+V I+NWMG Sbjct: 481 FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540 Query: 1742 KFTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKE 1921 KFTNRN+AKCAARMGQCFSSTYATVEVP ++A L D+ERNNY+FSDGIGMI+ DLAKE Sbjct: 541 KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600 Query: 1922 VAEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWT 2101 VAEKL++ N PCA+QIRYAG KGVVACWPA +G RL LR SM KF SNHTTLEICSWT Sbjct: 601 VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660 Query: 2102 RFQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNT 2281 RFQPGFLNRQI+TLLS L+V D+ FW+MQ +MVS+L+ + D D+AFDV+T SC + GNT Sbjct: 661 RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720 Query: 2282 AAMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQ 2461 AA+ML+AGF P EPHL GML+ IR +QL LREK+RIFV SGRWLMGCLDELGVLE+GQ Sbjct: 721 AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780 Query: 2462 CFIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLK 2641 CFIQVS PSLE CF KHGS FS++KK L+V+ G VV+AKNPCLHPGD+RILEAVD P L Sbjct: 781 CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840 Query: 2642 HLHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKP 2821 HLHDCL+FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+ E K+ Sbjct: 841 HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900 Query: 2822 RGVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKT 3001 R V H DII+FF KNMVNE+LG ICNAHVVHAD S+YGALDE CIKLAELAA AVDFPKT Sbjct: 901 RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960 Query: 3002 GKIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE- 3178 GK+V+MPP LKPKLYPDFMGKE+ QSY S KILG+LYR+++D YN D + SE Sbjct: 961 GKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSEL 1020 Query: 3179 -----NIFYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMP 3343 +I YD++LE++GS D+I DAW KCSYDGQL GLL QYKV E+EVVTGHIWSMP Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMP 1080 Query: 3344 KSSSKKQGELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSY 3523 K +S+KQGELKERLK +Y +L+K++R+VFE M DF+QL++ EKN+ YEQKASAWYQV+Y Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAY 1140 Query: 3524 HESWVEKSKELQKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLA 3703 H WV KS ELQ+ D G +LSFAWIAADYL RIKIR R + +SKP++SL +YLA Sbjct: 1141 HPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLA 1200 Query: 3704 DKI 3712 D+I Sbjct: 1201 DRI 1203 >ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera] Length = 1197 Score = 1654 bits (4282), Expect = 0.0 Identities = 804/1194 (67%), Positives = 970/1194 (81%), Gaps = 4/1194 (0%) Frame = +2 Query: 143 DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESV 319 + DM+VTQIS+GG D+ ++A L YLED +G V RCR+KTSSTP +SYP+FEI +T + Sbjct: 7 EKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKI 66 Query: 320 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 499 +R +Y+KVEPHAFVHF ++A AL+ + L L + +KVS GP+ P+ L++ RRT Sbjct: 67 ERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRT 126 Query: 500 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 679 T PFK P V +EIG+L SRDE+ GWRGP +G DFLVDPF+GTC+ FT+DTAFS +G Sbjct: 127 TFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMP 186 Query: 680 RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 859 + AVIKCNFK+EF+ REINE+++ +D +S+++LLQL+S P +YYRTADDDIEE+VP+DLL Sbjct: 187 KHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLL 246 Query: 860 DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LR 1033 DDDDPWIRTTDF SGAIGR N+YRIS+ PR +L+KA+ +L+ RRV + D + LR Sbjct: 247 DDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLR 306 Query: 1034 VQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEE 1213 V+DEPDFG+PM DPFFC Q+KEG+ F+VMF+VNAV+HKGIINQHQ+SD FFDLLR Q ++ Sbjct: 307 VRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKD 366 Query: 1214 FNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAY 1393 N+ ALKHI SY+ P +DA + L V KWL+KNPKLL+ P+++DDIVEVRRL+ITPSKAY Sbjct: 367 INIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAY 426 Query: 1394 CLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQK 1573 CLPPEVELSNRVLR Y+ +SDRFLRVTFMDE MQT+N NVL YY APIV+ +T N PQK Sbjct: 427 CLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQK 486 Query: 1574 TTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTN 1753 T +F+RV+ IL GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK T+V +IK+WMGKFTN Sbjct: 487 TRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN 546 Query: 1754 RNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEK 1933 RNVAKCAARMGQCFSSTYATVEVP + +L D++RN Y FSDGIG I DLA EVAEK Sbjct: 547 RNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEK 605 Query: 1934 LQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQP 2113 L++ P A+QIRYAG KGVVACWP+ +G RL R SM KF S+HT LEICSWTRFQP Sbjct: 606 LKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQP 664 Query: 2114 GFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMM 2293 GFLNRQIVTLLSAL V D FW+MQE M+S+L+ +L D D+AFDVL SC + GNTAA+M Sbjct: 665 GFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIM 724 Query: 2294 LAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQ 2473 L+AGF+P EPHL+GML+ IR +Q LREK+RIFV SGRWLMGCLDELGVLE GQCFIQ Sbjct: 725 LSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQ 784 Query: 2474 VSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHD 2653 VS+PSLE+CF KHGS FS +KNL+VI G+V IAKNPCLHPGDVRILEAVD PGL+HL D Sbjct: 785 VSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVD 843 Query: 2654 CLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVT 2833 CL+FPQKG+RPH NEASGSDLDGDLYFVTW++ LIPPSK+SWPPM Y+ E K R VT Sbjct: 844 CLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVT 903 Query: 2834 HSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIV 3013 DII+FFTKNMVNE+LG ICNAHVVHAD S+YGALDE C+ LAE AA AVDFPKTGK+V Sbjct: 904 SLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLV 963 Query: 3014 SMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYD 3193 ++PP LKPK+YPDFMGKEE Q+Y+S KILGK+YR+I+DAYN+D S + + ++ + +D Sbjct: 964 TLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFD 1023 Query: 3194 RELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGEL 3373 +L I GS DFI DAW KCSYDGQL GLLGQYKV E+EVVTGH+WSMPK S+KQGEL Sbjct: 1024 EDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGEL 1083 Query: 3374 KERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKE 3553 ERLKHAYS+L+K++R++FE M DFDQL+D EKN YEQKASAWYQV+YH +WV+KS E Sbjct: 1084 TERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLE 1143 Query: 3554 LQKVDDP-GKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 LQ D+ G+ V+LSFAWI ADYL RIKIR++ N SSKPI+SL R+L D+I Sbjct: 1144 LQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197 >gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] Length = 1194 Score = 1643 bits (4254), Expect = 0.0 Identities = 790/1192 (66%), Positives = 966/1192 (81%), Gaps = 2/1192 (0%) Frame = +2 Query: 143 DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFE-INTESV 319 + D +VTQIS+GG D+++ AK LMD+LE +VG+V+RCR+KTS T ++SYP FE IN+E++ Sbjct: 7 EKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFENINSENI 66 Query: 320 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 499 + +VEPHAFVHFA +S L S LML +Q +KV+ GP+ YR+++ RRT Sbjct: 67 MESIDIRQVEPHAFVHFASPESVNWTL----SNPLMLNNQTLKVTLGPETLYRMNQRRRT 122 Query: 500 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 679 TTP K+ V +EIG L RDEF V WRGP G DFLVDPF+G C+ FTRDTAFS + A Sbjct: 123 TTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFKDMA 182 Query: 680 RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 859 + A++KC+FK+EF+ R+INEIK+Y D + +V+LL LAS P+++YRTADDDIE SVP+DLL Sbjct: 183 KLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPFDLL 242 Query: 860 DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 1039 DDDDPWIRTTDF PSGAIGR N+YR+S+ PR+ +L+KA+ +L+ERRV + LR+Q Sbjct: 243 DDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKALRIQ 302 Query: 1040 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 1219 EPDF VPM DP F K G+ F++MF++N +VHKGI NQH +SD FDL R Q E N Sbjct: 303 SEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQPREIN 362 Query: 1220 LVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCL 1399 L ALKHI SYKRP +DA L NVQ+WL++NPKLL+ P Q+DDI EVRRL+ITP++AYCL Sbjct: 363 LAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYCL 422 Query: 1400 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTT 1579 PPEVELSNRVLRKY+ +SDRFLRVTFMDE MQT+N NVLTYY APIV+E+T N + QKT Sbjct: 423 PPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTK 482 Query: 1580 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 1759 +F+RV+ +L GFYLCG++YSFLAFSSNQLRDRSAWFFAED TV+ IK WMG+F NRN Sbjct: 483 VFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGRFNNRN 542 Query: 1760 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 1939 +AKCAARMGQCFSSTYATVEVP ++ N L+++ERN YVFSDGIGMI+ DLAKEVAEKL+ Sbjct: 543 IAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKLK 602 Query: 1940 MHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 2119 + N P A+QIRYAG KGVVACWP +G RL LR SM KFDS HT LEICSWTRFQPGF Sbjct: 603 LDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGF 662 Query: 2120 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 2299 LNRQIVTLLS L V D+ FW+MQE M+ +L+ +L D D+AF+VLT SC + GN A+ML+ Sbjct: 663 LNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLS 722 Query: 2300 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 2479 AGF+P +EPHL+GML+ IR +QL LREK+RIFV GRWLMGCLDELGVLE GQCFIQVS Sbjct: 723 AGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVS 782 Query: 2480 TPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCL 2659 TPSLE+CF+KHGS FS+TK NLEVI G VVIAKNPCLHPGD+RILEAVDVPGL HL+DCL Sbjct: 783 TPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCL 842 Query: 2660 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 2839 +FPQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y+P + + PR VT Sbjct: 843 VFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVTQK 902 Query: 2840 DIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 3019 DII+FF++NMVNESLG ICNAHVVHAD S YGALDEKC+ LAELAAIAVDFPKTG IV+M Sbjct: 903 DIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTM 962 Query: 3020 PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRE 3199 P LKPK+YPDFMGKEE QSYKSTKI+G+LYR+I+D Y+ D PS +L S NI +D + Sbjct: 963 PAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFDTD 1022 Query: 3200 LEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKE 3379 LE+ G+ DF+ DAW KCSYDGQL GL+ QYKV E+EVVTG IWSMPK +S+K+G+LKE Sbjct: 1023 LEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDLKE 1082 Query: 3380 RLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKEL- 3556 RLKH+Y+ LRK++R+VFE + DF+QL+D EKNV YE++ASAWYQ++YH WV+KS+++ Sbjct: 1083 RLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKWVKKSQDMH 1142 Query: 3557 QKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 ++++ V+LSFAWIAADYL RIKIR R + +A S+KPI+SLG+YLAD+I Sbjct: 1143 DQLEEVKNVVMLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194 >ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Citrus sinensis] Length = 1197 Score = 1627 bits (4212), Expect = 0.0 Identities = 786/1189 (66%), Positives = 960/1189 (80%), Gaps = 2/1189 (0%) Frame = +2 Query: 152 MIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRK 328 ++ Q+S GG D+N+ A L+ YLE++VG VWRCR+KTS TP +SYP+F + NT V++ Sbjct: 10 LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKT 69 Query: 329 TEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTP 508 +YEKVEPHAFVHFA+ RA++ + L L Q +KVS GP+NP+RL++ RT+TP Sbjct: 70 DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129 Query: 509 FKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPA 688 FK+P V +EIG L SRDEF V WRGP +G DFLVDPF+GTC+ FTRD AF+++ A Sbjct: 130 FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189 Query: 689 VIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDD 868 VIKC FK+EF+ REIN +K+Y +F+ + ILLQLAS P+++YRTADDDI VP+D+LDDD Sbjct: 190 VIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDD 249 Query: 869 DPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEP 1048 DPWIRTTDF PSGAIGR N+YRIS+ R+R +L K + +L ERRV + +++EP Sbjct: 250 DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEP 309 Query: 1049 DFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVA 1228 DF VPM DPFFC Y+EG+SF++MF+VNAV+HKGIINQHQ+SD+FFDLLR Q+ E N+ A Sbjct: 310 DFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAA 369 Query: 1229 LKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCLPPE 1408 LKHIYSYK P +DA + L VQ+WL+K+P+L + P+Q+DDIVEVRRL+ITP+KAYCLPPE Sbjct: 370 LKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPE 429 Query: 1409 VELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQ 1588 VELSNRVLRKY+ ++DRFLRVTFMDE +QT+N NVL+Y+ APIVR++T N QKT +F+ Sbjct: 430 VELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFK 489 Query: 1589 RVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAK 1768 RVR IL GFYLCGRK+SFLAFSS+QLRD SAWFF+ED T+V IK WMG+FT++N+AK Sbjct: 490 RVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAK 549 Query: 1769 CAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHT 1948 CAARMGQCFSSTYATVEVPP++ + +L D++RN YVFSDGIG I+ DLA EVA+KL++ Sbjct: 550 CAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDV 609 Query: 1949 NLP-CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLN 2125 N P CA+QIRYAG KGVVACWPA +G R+ LR SM KF S+HTTLEICSWTRFQPGFLN Sbjct: 610 NPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLN 669 Query: 2126 RQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAG 2305 RQI+TLLS L V D+ FW MQ+ M+S+L+ +L D D+AF+VLT +C + GNTAA+ML+AG Sbjct: 670 RQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAG 729 Query: 2306 FRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTP 2485 F P EPHLRGML+ IR +QL LREK+RIFV +GRWLMGCLDELGVLE GQCFIQVS P Sbjct: 730 FNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEP 789 Query: 2486 SLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIF 2665 L +CF+KHGS F++TKK L+VI G VVIAKNPCLHPGD+RILEAVD P L HL+DCL+F Sbjct: 790 FLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVF 848 Query: 2666 PQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDI 2845 PQKG+RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSWPPM+Y E K R V DI Sbjct: 849 PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDI 908 Query: 2846 IEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPP 3025 IEFF K+MVNE+LGTICNAHVVHAD S+YGALDE CI LAELAA AVDFPKTGKIV+MP Sbjct: 909 IEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPA 968 Query: 3026 ELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELE 3205 LKPKLYPDFMGKE QSYKS KILG+LYR+ +DAY++D S ++ +I YD +LE Sbjct: 969 HLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLE 1028 Query: 3206 ITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERL 3385 + S DFIADAW+ KCSYDGQL GLL QYKVN E+E+VTGHIWSMPK +S+KQGELKERL Sbjct: 1029 VPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERL 1088 Query: 3386 KHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKV 3565 KH+YSALRK++R+VFE M D + LS+ EKN +E+KASAWYQV+YH WV+KS +LQ+ Sbjct: 1089 KHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQ 1148 Query: 3566 DDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 D VLLSFAWIA DYL RIKIR R+M N +SKP++ L RY+AD+I Sbjct: 1149 DSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197 >gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum] gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum] Length = 1196 Score = 1622 bits (4200), Expect = 0.0 Identities = 790/1189 (66%), Positives = 953/1189 (80%), Gaps = 1/1189 (0%) Frame = +2 Query: 149 DMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQR 325 + +VTQ+S+GG D+++ A+ LM YLE++VGLVWRCR+KTS TP +SYPNFEI +T +QR Sbjct: 9 ETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQR 68 Query: 326 KTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTT 505 K Y+KVEPHAFVHFA ++ A++ + L +Q++KVS GP+NPY L+ RR TT Sbjct: 69 KDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTT 128 Query: 506 PFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARP 685 PFK+P VS+EIG L S DEF+VGWRGP +G +FLVDPF+ TC+ F+RDTAFS +G Sbjct: 129 PFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEH 188 Query: 686 AVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDD 865 AVIKC+FK+EF+ REINE+K+Y + T V+LLQLAS P ++YRTADDD E++VP+ LLDD Sbjct: 189 AVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLDD 248 Query: 866 DDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDE 1045 DD WIRTTDF SGAIGR NTYR+ VRPR+ +L+KA+ +L+ERRVP +LR++DE Sbjct: 249 DDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRDE 308 Query: 1046 PDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLV 1225 PDFG M D F+ + YKEG+ F++MF+VNAV+HKGI NQHQ+S +FF LLR Q+ E N+ Sbjct: 309 PDFGRSMSDHFY-YIYKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNVA 367 Query: 1226 ALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCLPP 1405 ALKHIYSY+ P YDA L +V WL+KNPKL + P Q+DDIVE+RRL+ITP+KAYCL P Sbjct: 368 ALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLLP 427 Query: 1406 EVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMF 1585 EVELSNRVLRKY+ ++DRFLRVTFMDE MQ +N NVLTYY A IVR+VT QKT +F Sbjct: 428 EVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGVF 487 Query: 1586 QRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVA 1765 +RV+ IL GFYLCGRKYSFLAFS+NQLRDR+AWFFAED V I WMGKFTNRN+A Sbjct: 488 KRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNIA 547 Query: 1766 KCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMH 1945 KCAARMGQCFSSTYATVEVP Q N L D++RN Y FSDGIG I+ DLA EVA+KL++ Sbjct: 548 KCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKLKLD 607 Query: 1946 TNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLN 2125 N PCA+QIRYAG KGVVACWP + RL LR+SM KF S+HTTLEICSWTRFQPGFLN Sbjct: 608 LNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFLN 667 Query: 2126 RQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAG 2305 RQI+TLLS L V D+ FW MQ MVS+LD +L D D AF+V+ SC + G+T A+ML+AG Sbjct: 668 RQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAIMLSAG 727 Query: 2306 FRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTP 2485 F+P EPHLRGML+ +R SQL LREKSRIF+HSGRWLMG LDELGVLE GQCFIQVS P Sbjct: 728 FKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNP 787 Query: 2486 SLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIF 2665 SL++CF KHGS F++TKKN EVI GLVVIAKNPCLHPGD+RILEAVD PGL HL+DCL+F Sbjct: 788 SLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVF 847 Query: 2666 PQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDI 2845 PQKGERPH NEASGSDLDGDLYFVTW++ LIPPSKKS PM Y+ +E R VTH DI Sbjct: 848 PQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHKDI 907 Query: 2846 IEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPP 3025 IEFF+KNMVNE LG+ICNAHVVH+D S++GA DEKCI LAELAAIAVDFPKTGKIVSMP Sbjct: 908 IEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMPA 967 Query: 3026 ELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELE 3205 +LKPKLYPDFMGKEE QSYKS KILG+LYR I+DAY++D S +L + + +I YD +LE Sbjct: 968 QLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYDADLE 1027 Query: 3206 ITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERL 3385 ITGS D+I DAW+ KCSYDGQL+GLL QYKV E+EVVTG IWSMPK +SKK G+LKE+L Sbjct: 1028 ITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKEKL 1087 Query: 3386 KHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKV 3565 H+Y +LRK++R++FE M +F+QL++ EKN YE+KASAWYQV+YH WV+K E QK Sbjct: 1088 GHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQKP 1147 Query: 3566 DDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 D V+LSFAWIAADYL RIK+R + EN +KP++SL RYLAD+I Sbjct: 1148 DGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196 >ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica] gi|462422376|gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica] Length = 1196 Score = 1618 bits (4190), Expect = 0.0 Identities = 778/1197 (64%), Positives = 959/1197 (80%), Gaps = 1/1197 (0%) Frame = +2 Query: 125 MGYKIGDNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI 304 M ++ +N +VTQ+S GG + AK L+ YLED++GLV+RCR+KTS TP +S+PNFEI Sbjct: 1 MEFEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI 60 Query: 305 NTESVQRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLS 484 NT V+R +Y +VEPHAFVHF S A++ + L ++ +KVS GP+NPY L+ Sbjct: 61 NTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLN 120 Query: 485 EMRRTTTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFS 664 RRT TPFK+ V +EIG L +DEF WRGP G DF+VDPF+GTC+ FT DTAFS Sbjct: 121 RRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFS 180 Query: 665 IRGEARPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESV 844 +G + AVIKC+FK+EF+ REI EIK+Y D + +VILL+L S P + YRTADDDI++SV Sbjct: 181 FKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSV 240 Query: 845 PYDLLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE 1024 P+DLLDDDDPWIRTTDF PSGAIGR N+YR+ + PR+ +L+KA+ +L+ERRV V Sbjct: 241 PFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKW 300 Query: 1025 RLRVQDEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQ 1204 ++QDEPDFG+ +PFF QY+EG+SF++MF+VNAV+HKG +NQHQ+SD+FF LLR Q Sbjct: 301 PPKIQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQ 360 Query: 1205 NEEFNLVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPS 1384 +E N+ ALKH+ SY+ P +DA L VQ WL+KNPKL++ P+++DDI EVRRL+ITP+ Sbjct: 361 PKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPT 420 Query: 1385 KAYCLPPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLS 1564 KAYCLPPEVELSNRVLRKY+ ++DRFLRVTFMDE MQ +N NVL YY APIV+E+T N Sbjct: 421 KAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSF 480 Query: 1565 PQKTTMFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGK 1744 QKT +F+R R IL GFYLCGRKY+FLAFSSNQLRDRSAWFFAE + +V I +WMGK Sbjct: 481 LQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGK 540 Query: 1745 FTNRNVAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEV 1924 F N+NVAKCAARMGQCFSSTYATVEV S+ N + D++RN YVFSDGIGMI+ DLA EV Sbjct: 541 FNNKNVAKCAARMGQCFSSTYATVEVTSSEVND-IPDIKRNGYVFSDGIGMITPDLALEV 599 Query: 1925 AEKLQMHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTR 2104 AEKL++ N PCA+QIR+AG KGVVACWP+ +G RL LRTSM KF+S HTTLEICSWTR Sbjct: 600 AEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTR 659 Query: 2105 FQPGFLNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTA 2284 +QPGFLNRQI+TLLS L VED+ FWRMQE MV +L+ +L D D+AFDVLT SC + GN A Sbjct: 660 YQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAA 719 Query: 2285 AMMLAAGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQC 2464 A+ML+AGF+P EPHLRGML+ I+ +QL LREK+RIFVHSGRWLMG LDELGVLE GQC Sbjct: 720 AIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQC 779 Query: 2465 FIQVSTPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKH 2644 F+QVSTP LE CFAKHGS F++ ++NL+VI G VVIAKNPCLHPGD+RILEAVD PGL H Sbjct: 780 FVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHH 839 Query: 2645 LHDCLIFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPR 2824 L+DCL+FPQKG+RPH +EASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y+P E K + R Sbjct: 840 LYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGR 899 Query: 2825 GVTHSDIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTG 3004 VT DII+FF KNM NE+LG ICNAHVVHAD S YGALD C+KLAELAA+AVDFPKTG Sbjct: 900 PVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTG 959 Query: 3005 KIVSMPPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENI 3184 KIVS+P LKP+LYPDF+GKE+ QSYKSTKILG+LYR++RDAY++D S +L Y +I Sbjct: 960 KIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDI 1019 Query: 3185 FYDRELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQ 3364 YD +LE+ G+ DF+ DAW KCSYDGQL GL+GQYKV E+E+VTGH+WS+PKS+SKKQ Sbjct: 1020 PYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQ 1079 Query: 3365 GELKERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEK 3544 GELKERL H+Y+AL+K++R++FE + + + L+D EKN+ E+KASAWYQV+YH WV++ Sbjct: 1080 GELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQ 1139 Query: 3545 SKELQKVDDPGK-TVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 S LQ+ D PG V+LSFAWIAADYL RIKI+ +E+ S+KPI+SL RYLAD+I Sbjct: 1140 SPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196 >ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp. vesca] Length = 1197 Score = 1603 bits (4151), Expect = 0.0 Identities = 765/1191 (64%), Positives = 943/1191 (79%), Gaps = 1/1191 (0%) Frame = +2 Query: 143 DNDMIVTQISLGGLDKNISAKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTES-V 319 +ND +VTQ+S GG +++AK L+ YLED++GLV+RCR+KTS TP +S PNFEI+ + + Sbjct: 7 ENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAADI 66 Query: 320 QRKTEYEKVEPHAFVHFALAKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRT 499 + +Y KVEPHAFVHFA +S ++ L +Q +K S GP+N + +++ RRT Sbjct: 67 ETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRRRT 126 Query: 500 TTPFKIPGVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 679 PFK+ V +EIG L DEF V W+GP G DF+VDPF+GTC+ F RDTAFS +G Sbjct: 127 KIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKGLN 186 Query: 680 RPAVIKCNFKIEFVPREINEIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLL 859 + AVI C+FK EF REI E K Y + V+LL+L S P + YRTADDDI++SV +DLL Sbjct: 187 KHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFDLL 246 Query: 860 DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 1039 DDDDPWIRTTDF P+GAIGR N YR+ + PR+ +L+KA+ +L+ERRV + + R+Q Sbjct: 247 DDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPRIQ 306 Query: 1040 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 1219 DEP FG PM D F Y++ +SF ++F+VNAV+HKGI+NQHQ+S++FFDLLR Q EE N Sbjct: 307 DEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEEIN 366 Query: 1220 LVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQKPEQMDDIVEVRRLIITPSKAYCL 1399 + ALKH+ SYK P +DA + L VQ+WL++NPKL++ P+++DDI EVRRL+ITP+KAYCL Sbjct: 367 VAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCL 426 Query: 1400 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTT 1579 PPEVELSNRVLRKY+ ++DRFLRVTFMDE MQT+N NV+ Y APIV+E+T+N PQKT Sbjct: 427 PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTK 486 Query: 1580 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 1759 ++ R+R IL GF+LCGRKYSFLAFSSNQLRDRSAWFFAEDK+ ++ IKNWMG+FTNRN Sbjct: 487 VYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTNRN 546 Query: 1760 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 1939 VAKCAARMGQCFSSTYATVEVP +Q NH+L D+ERN YVFSDGIG I+ DLA EVAEKL+ Sbjct: 547 VAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLK 606 Query: 1940 MHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 2119 + + P A+QIRY G KGVVACWP+ +G RL LR SM KF S+HTTLEICSWTR QPGF Sbjct: 607 LDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGF 666 Query: 2120 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 2299 LNRQI+TLLSAL V D+ FW MQE MVS+L +L D D+AFDVLT SC + GN+AA+ML+ Sbjct: 667 LNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLS 726 Query: 2300 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 2479 AGF+P EPHLRGML+ I+ +QL LREK+RIFV SGRWLMGCLDELGVLE GQCF+QVS Sbjct: 727 AGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVS 786 Query: 2480 TPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCL 2659 TPSLE+CFAKHGS F +T KNL+VI G VV+AKNPCLHPGD+RILEAVD PGL HLHDCL Sbjct: 787 TPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCL 846 Query: 2660 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 2839 +FPQKG RPH +EASGSDLDGDLYFVTWD+NLIPP KKSW PM+YEP E K R VT Sbjct: 847 VFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQ 906 Query: 2840 DIIEFFTKNMVNESLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 3019 D+IEFF +NMVNE+LG ICNAHVVH+D S+YGA DE C+KLAELAA+AVDFPKTGKIV+M Sbjct: 907 DLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTM 966 Query: 3020 PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRE 3199 PP LKPKLYPDFMGK++ QSYKS KILG+LYR+I DAY++D S + + ++ YD + Sbjct: 967 PPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVKYDMD 1026 Query: 3200 LEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKE 3379 LE+ + DFIADAW KCSYD QL GL+ QYK+ E+E+VTGH+WSMPK +S+KQGEL+E Sbjct: 1027 LEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQGELQE 1086 Query: 3380 RLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQ 3559 RLKH+YSAL+K++R+ FE M F+ L D +KN YEQKASAWYQV+YH WV+KS +L Sbjct: 1087 RLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKSLDLH 1146 Query: 3560 KVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 3712 D PG V+LSFAWIAADYL RIKI++R++ N KPI+ L +YLAD+I Sbjct: 1147 GPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197