BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00042097
         (579 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDM63857.1| polyprotein [Plum bark necrosis stem pitting-ass...    70   5e-10
gb|AGL80609.1| polyprotein [Plum bark necrosis stem pitting-asso...    68   2e-09
ref|YP_001552323.1| polyprotein [Plum bark necrosis and stem pit...    68   2e-09
gb|AGL80623.1| polyprotein [Plum bark necrosis stem pitting-asso...    67   3e-09
gb|AGL80616.1| polyprotein [Plum bark necrosis stem pitting-asso...    67   3e-09
ref|NP_620677.1| putative replicase [Spinach latent virus] gi|28...    67   3e-09
gb|AGB34172.1| replication-associated protein 2 [Tobacco rattle ...    66   8e-09
gb|AGB34169.1| replicase-associated protein 1 [Tobacco rattle vi...    66   8e-09
gb|AGL80630.1| polyprotein [Plum bark necrosis stem pitting-asso...    65   1e-08
gb|AHG52751.1| putative replicase [Tobacco rattle virus]               65   2e-08
gb|AHG52750.1| RNA-dependent RNA polymerase [Tobacco rattle virus]     65   2e-08
gb|AFN02871.1| 194K replication-associated protein 2 [Tobacco ra...    65   2e-08
gb|AFN02870.1| 134K replication-associated protein 1 [Tobacco ra...    65   2e-08
gb|ADU05353.1| replication-associated protein 2 [Tobacco rattle ...    65   2e-08
gb|ADU05352.1| replication-associated protein 1 [Tobacco rattle ...    65   2e-08
gb|ACX54059.1| 134 kDa protein [Tobacco rattle virus]                  65   2e-08
gb|ACX54058.1| 194 kDa readthrough protein [Tobacco rattle virus]      65   2e-08
gb|AAC02066.2| RNA polymerase [Tobacco rattle virus]                   65   2e-08
emb|CAE52519.1| helicase [Tobacco rattle virus]                        64   2e-08
emb|CAE52518.1| replicase [Tobacco rattle virus]                       64   2e-08

>emb|CDM63857.1| polyprotein [Plum bark necrosis stem pitting-associated virus]
          Length = 2866

 Score = 69.7 bits (169), Expect = 5e-10
 Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
 Frame = +3

Query: 15   YGDEHQIPHVPRAE---CPKMHVSVVPSRAEESFITYRCPPAL---LACFGS----VYGW 164
            YGD HQIP +PR E   C +   ++   +  E   +YRCP  +   + C       VY  
Sbjct: 2142 YGDRHQIPFIPRTEGFVCTRAEHNIDEDKYSEVLKSYRCPADICYWMNCVAKAPEKVYSG 2201

Query: 165  RVRSASKVRGSVSMVQSAT--SLTIPPGCVMMAMYQAEKKVLRQLYSGCGV----KVEFT 326
             V + +KV  SV  + SA   S  I     ++   QA+K++  +  +G  +    K+  +
Sbjct: 2202 LVTTFNKVLRSVVKIPSAVIPSHLIKEANAILTFTQADKEMAFKFVAGAKLGMKQKIHVS 2261

Query: 327  TTHEAQGKTYKHVWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYV--SPRLGDQV 500
            T HEAQGKT+++V ++    R R  +  +Y    + LV ++R T S  YV    R  D +
Sbjct: 2262 TIHEAQGKTFENVIIY----RGRQAEDDVYRSLPHTLVGLTRHTKSLKYVVHRARTADTL 2317

Query: 501  EKWIE---QGRD 527
             K I+   +G+D
Sbjct: 2318 SKDIDNILKGKD 2329


>gb|AGL80609.1| polyprotein [Plum bark necrosis stem pitting-associated virus]
          Length = 2343

 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
 Frame = +3

Query: 15   YGDEHQIPHVPRAE---CPKMHVSVVPSRAEESFITYRCPPALLACFG---------SVY 158
            YGD HQIP +PR E   C +   ++   +  E   +YRCP  +  CF           VY
Sbjct: 2144 YGDRHQIPFIPRTEGFVCTRAEHNIDEDKYSEVLKSYRCPADI--CFWMNCVAKAPEKVY 2201

Query: 159  GWRVRSASKVRGSVSMVQSAT--SLTIPPGCVMMAMYQAEKKVLRQLYSGCGV----KVE 320
               V + +KV  SV  + SA   S  I     ++   QA+K++  +  +G  +    K+ 
Sbjct: 2202 SGLVTTFNKVLRSVVKIPSAVIPSHLIKEVNAILTFTQADKEMAYKFVAGAKLGMKQKIH 2261

Query: 321  FTTTHEAQGKTYKHVWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYV--SPRLGD 494
             +T HEAQGKT+++V ++    R R  +  +Y    + LV ++R T S  YV    R  D
Sbjct: 2262 VSTIHEAQGKTFENVLIY----RGRQAEDDVYKSLPHRLVGLTRHTKSLRYVVHPARTAD 2317

Query: 495  QVEKWIE 515
             + K I+
Sbjct: 2318 TLSKDID 2324


>ref|YP_001552323.1| polyprotein [Plum bark necrosis and stem pitting-associated virus]
            gi|158828622|gb|ABW81234.1| polyprotein [Plum bark
            necrosis stem pitting-associated virus]
          Length = 2343

 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
 Frame = +3

Query: 15   YGDEHQIPHVPRAE---CPKMHVSVVPSRAEESFITYRCPPAL---LACFGS----VYGW 164
            YGD HQIP +PR E   C +   ++   +  E   +YRCP  +   + C       VY  
Sbjct: 2144 YGDRHQIPFIPRTEGFVCTRAEHNIDEDKYSEVLKSYRCPADICYWMNCVAKAPEKVYSG 2203

Query: 165  RVRSASKVRGSVSMVQSAT--SLTIPPGCVMMAMYQAEKKVLRQLYSGCGV----KVEFT 326
             V + +KV  SV  + SA   S  I     ++   QA+K++  +  +G  +    K+  +
Sbjct: 2204 LVTTFNKVLRSVVKIPSAVIPSHLIKEANAILTFTQADKEMAFKFVAGAKLGMKQKIHVS 2263

Query: 327  TTHEAQGKTYKHVWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYV--SPRLGDQV 500
            T HEAQGKT+++V ++    R R  +  +Y    + LV ++R T S  YV    R  D +
Sbjct: 2264 TIHEAQGKTFENVIIY----RGRQAEDDVYRSLPHRLVGLTRHTKSLKYVVHPARTADTL 2319

Query: 501  EKWIE 515
             K I+
Sbjct: 2320 SKDID 2324


>gb|AGL80623.1| polyprotein [Plum bark necrosis stem pitting-associated virus]
          Length = 2344

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%)
 Frame = +3

Query: 15   YGDEHQIPHVPRAE---CPKMHVSVVPSRAEESFITYRCPPALLACFG---------SVY 158
            YGD HQIP +PR E   C +   ++  S+  E   +YRCP  +  CF           VY
Sbjct: 2145 YGDRHQIPFIPRTEGFVCTRAEHNIDESKYTEVLKSYRCPADI--CFWMNCVAKAPEKVY 2202

Query: 159  GWRVRSASKVRGSVSMVQSAT--SLTIPPGCVMMAMYQAEKKVLRQLYSGCGV----KVE 320
               V + +KV  SV  + SA   S  I     ++   Q++K++  +  +G  +    K+ 
Sbjct: 2203 SGLVTTFNKVLRSVVKIPSAVIPSHMIKDVNAILTFTQSDKEMAYKFVAGAKLGIKNKIH 2262

Query: 321  FTTTHEAQGKTYKHVWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYV 476
             +T HEAQGKT+++V ++    R R  +  +Y    + LV ++R T S  YV
Sbjct: 2263 VSTIHEAQGKTFENVIIY----RGRQAEDDVYKSLPHRLVGLTRHTKSLKYV 2310


>gb|AGL80616.1| polyprotein [Plum bark necrosis stem pitting-associated virus]
          Length = 2344

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%)
 Frame = +3

Query: 15   YGDEHQIPHVPRAE---CPKMHVSVVPSRAEESFITYRCPPALLACFG---------SVY 158
            YGD HQIP +PR E   C +   ++  S+  E   +YRCP  +  CF           VY
Sbjct: 2145 YGDRHQIPFIPRTEGFVCTRAEHNIDESKYTEVLKSYRCPADI--CFWMNCVAKAPEKVY 2202

Query: 159  GWRVRSASKVRGSVSMVQSAT--SLTIPPGCVMMAMYQAEKKVLRQLYSGCGV----KVE 320
               V + +KV  SV  + SA   S  I     ++   Q++K++  +  +G  +    K+ 
Sbjct: 2203 SGLVTTFNKVLRSVVKIPSAVIPSHMIKDVNAILTFTQSDKEMAYKFVAGAKLGIKNKIH 2262

Query: 321  FTTTHEAQGKTYKHVWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYV 476
             +T HEAQGKT+++V ++    R R  +  +Y    + LV ++R T S  YV
Sbjct: 2263 VSTIHEAQGKTFENVIIY----RGRQAEDDVYKSLPHRLVGLTRHTKSLKYV 2310


>ref|NP_620677.1| putative replicase [Spinach latent virus] gi|2826511|gb|AAB99733.1|
            putative replicase [spinach latent virus]
          Length = 1056

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
 Frame = +3

Query: 3    QLVGYGDEHQIPHVPRAECPKMHVSVVPSRAEESFITYRCPPALLACFG-SVYGWRVRSA 179
            +++ +GD  QIP V R    K+  + V    +   ITYRCP  + A      YG +V++ 
Sbjct: 863  EVIAFGDTKQIPFVSRIPTVKLRHASVVGTLKPRTITYRCPRDVTAVLSEKFYGTKVKTF 922

Query: 180  SKVRGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKT 353
            + V+ S+ +  + S+T + +    + +A  QA+K  L +L    G++V   TTHEAQGKT
Sbjct: 923  NLVKQSLELKNIDSSTEIPVEKDTLYIAHTQADKHALMRLPGMNGIEV--LTTHEAQGKT 980

Query: 354  YKHVWLHR 377
              HV L R
Sbjct: 981  RDHVILVR 988


>gb|AGB34172.1| replication-associated protein 2 [Tobacco rattle virus]
          Length = 1707

 Score = 65.9 bits (159), Expect = 8e-09
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+S+  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMSVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|AGB34169.1| replicase-associated protein 1 [Tobacco rattle virus]
          Length = 1187

 Score = 65.9 bits (159), Expect = 8e-09
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+S+  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMSVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|AGL80630.1| polyprotein [Plum bark necrosis stem pitting-associated virus]
          Length = 2344

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
 Frame = +3

Query: 15   YGDEHQIPHVPRAE---CPKMHVSVVPSRAEESFITYRCPPALLACF---------GSVY 158
            YGD HQIP +PR E   C +    +  S+  E   TYRCP  +  CF           +Y
Sbjct: 2145 YGDRHQIPFIPRTEGFVCTRAEHQIDESKYTEVLKTYRCPADI--CFWMNHVAKAPEKIY 2202

Query: 159  GWRVRSASKVRGSVSMVQSATSLT--IPPGCVMMAMYQAEKKVLRQLYSGC----GVKVE 320
               V + +KV  SV  + SA   T  +     ++   Q++K++  +  +G       K+ 
Sbjct: 2203 SGLVTTYNKVLRSVVKIPSAVISTQMLAGIDAILTFTQSDKEMANKFVAGAKGSNKFKIH 2262

Query: 321  FTTTHEAQGKTYKHVWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYV 476
             +T HEAQGKT+ +V +     R R  +  +Y    + LV ++R T S  Y+
Sbjct: 2263 ISTIHEAQGKTFGNVLIF----RGRQAEDDVYKSLPHRLVGLTRHTKSLKYI 2310


>gb|AHG52751.1| putative replicase [Tobacco rattle virus]
          Length = 1187

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|AHG52750.1| RNA-dependent RNA polymerase [Tobacco rattle virus]
          Length = 1707

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|AFN02871.1| 194K replication-associated protein 2 [Tobacco rattle virus]
            gi|574614149|gb|AHG52746.1| RNA-dependent RNA polymerase
            [Tobacco rattle virus] gi|574614159|gb|AHG52754.1|
            RNA-dependent RNA polymerase [Tobacco rattle virus]
            gi|574614164|gb|AHG52758.1| RNA-dependent RNA polymerase
            [Tobacco rattle virus]
          Length = 1707

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|AFN02870.1| 134K replication-associated protein 1 [Tobacco rattle virus]
            gi|574614150|gb|AHG52747.1| putative replicase [Tobacco
            rattle virus] gi|574614160|gb|AHG52755.1| putative
            replicase [Tobacco rattle virus]
            gi|574614165|gb|AHG52759.1| putative replicase [Tobacco
            rattle virus]
          Length = 1187

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|ADU05353.1| replication-associated protein 2 [Tobacco rattle virus]
          Length = 1707

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|ADU05352.1| replication-associated protein 1 [Tobacco rattle virus]
          Length = 1187

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|ACX54059.1| 134 kDa protein [Tobacco rattle virus]
          Length = 1187

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|ACX54058.1| 194 kDa readthrough protein [Tobacco rattle virus]
          Length = 1707

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLNKFYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYMIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>gb|AAC02066.2| RNA polymerase [Tobacco rattle virus]
          Length = 1707

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  ++A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVVAVLNKYYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYLIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>emb|CAE52519.1| helicase [Tobacco rattle virus]
          Length = 1187

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVNLRFSSLVGKFDIVTEKRETYRSPADVAAVLNKYYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELINLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYLIVALSRHTQSLVYETVK-EDDVSKEIRE 1168


>emb|CAE52518.1| replicase [Tobacco rattle virus]
          Length = 1707

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
 Frame = +3

Query: 18   GDEHQIPHVPRAECPKMHVSVVPSRAE---ESFITYRCPPALLACFGSVYGWRVRSASKV 188
            GD++QI   PR     +  S +  + +   E   TYR P  + A     Y   VR+ +  
Sbjct: 1002 GDQNQISFKPRVSQVNLRFSSLVGKFDIVTEKRETYRSPADVAAVLNKYYTGDVRTHNAT 1061

Query: 189  RGSVSM--VQSATSLTIPPGCVMMAMYQAEKKVLRQLYSGCGVKVEFTTTHEAQGKTYKH 362
              S+++  + S   +++ PG   +   Q+EKK L  L +   V  + +T HE+QG+T+K 
Sbjct: 1062 ANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELINLLALRKVAAKVSTVHESQGETFKD 1121

Query: 363  VWLHRFDNRVRTDKFSLYDKTKYVLVAMSRCTDSFVYVSPRLGDQVEKWIEQ 518
            V L     R +    S+    +Y++VA+SR T S VY + +  D V K I +
Sbjct: 1122 VVL----VRTKPTDDSIARGREYLIVALSRHTQSLVYETVK-EDDVSKEIRE 1168