BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00023294
         (2463 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU22643.1| hypothetical protein MIMGU_mgv1a002284mg [Mimulus...   933   0.0  
ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synt...   851   0.0  
ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synt...   850   0.0  
ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   836   0.0  
ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Popu...   822   0.0  
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              822   0.0  
gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus no...   816   0.0  
ref|XP_007030612.1| Pseudouridine synthase family protein isofor...   813   0.0  
ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synt...   812   0.0  
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   811   0.0  
ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synt...   799   0.0  
ref|XP_007208186.1| hypothetical protein PRUPE_ppa020985mg [Prun...   797   0.0  
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   796   0.0  
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   791   0.0  
ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citr...   791   0.0  
ref|XP_007030611.1| Pseudouridine synthase family protein, putat...   790   0.0  
ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synt...   786   0.0  
ref|XP_006577278.1| PREDICTED: multisubstrate pseudouridine synt...   765   0.0  
ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata...   764   0.0  
ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Caps...   761   0.0  

>gb|EYU22643.1| hypothetical protein MIMGU_mgv1a002284mg [Mimulus guttatus]
          Length = 691

 Score =  933 bits (2412), Expect = 0.0
 Identities = 484/693 (69%), Positives = 549/693 (79%), Gaps = 15/693 (2%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCP-SEIXXXX 2223
            MTS EESDVGILCYIS LPGFRGILKQRYSDFIVNEV +DGNVVHLT+L+ P SE     
Sbjct: 1    MTSAEESDVGILCYISPLPGFRGILKQRYSDFIVNEVDMDGNVVHLTSLEAPPSEAAGEK 60

Query: 2222 XXXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHR 2043
                    ++D++ EIESFR L GD+D EKLK  IDQ+ SGV  N ES+VLSPSSDK+HR
Sbjct: 61   KEKVADQLEKDYASEIESFRTLVGDSDAEKLKFFIDQISSGVKTNDESIVLSPSSDKTHR 120

Query: 2042 TAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKP-YDSR 1866
            TA+HNFFKER+KFLVTDT+DGPDSSSKCIRVRL                    +  YDSR
Sbjct: 121  TAVHNFFKERLKFLVTDTVDGPDSSSKCIRVRLNSGINNNARGNNSRKRKDRGQQQYDSR 180

Query: 1865 GSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTV 1686
            G+D+WP+N GKFLRF+LYKENKDTQE           +PRSFGFAGTKDKRSVSTQRVTV
Sbjct: 181  GTDSWPDNTGKFLRFYLYKENKDTQEALGILGKMIGVQPRSFGFAGTKDKRSVSTQRVTV 240

Query: 1685 FKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAAT 1506
            FKQRAS+LAALN +L GIKVGNFC+V+E LVLG+LQGNRFTITLRS+ ++ EDII+A+AT
Sbjct: 241  FKQRASKLAALNDRLFGIKVGNFCYVDEELVLGKLQGNRFTITLRSVSSDVEDIIRASAT 300

Query: 1505 ALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYY 1326
            ALG NGFINYFGLQRFGSSSIPTHLIGAALLRGEW+AAV+M+L+PREGEKD TR IREYY
Sbjct: 301  ALGNNGFINYFGLQRFGSSSIPTHLIGAALLRGEWKAAVSMILDPREGEKDVTRTIREYY 360

Query: 1325 KESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1146
            KESGDIEGT+RQLPRHLVAER+IL CF++ PGNYLQALLAIPRTLRMM+VHSYQSYLWNH
Sbjct: 361  KESGDIEGTLRQLPRHLVAERSILYCFQKNPGNYLQALLAIPRTLRMMFVHSYQSYLWNH 420

Query: 1145 AASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTDL 966
            AASMRVQ YG HQVVLGDLVYC  +  EKE   S  EC             ++++ V DL
Sbjct: 421  AASMRVQKYGMHQVVLGDLVYCKDQEIEKETKFSNSECEDGNGNDTHDDCHVDELSVIDL 480

Query: 965  SEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTES 786
            SE +N  VKVIS+EDIAAG YTI+DI+LPLPGSR++YP N+IGKIYHD+A+KD ISLT+ 
Sbjct: 481  SEARNTVVKVISEEDIAAGTYTIDDIVLPLPGSRITYPLNDIGKIYHDIARKDNISLTDG 540

Query: 785  VHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVSDS 606
             HNSKEFS T++TGAYRRVFQKPKDFEWELLKYTD N+PLAETDLDIIAKS  ST V DS
Sbjct: 541  AHNSKEFSFTSITGAYRRVFQKPKDFEWELLKYTDANIPLAETDLDIIAKSGTSTCVGDS 600

Query: 605  NEK-------------KNLDSCILEAGRDNETEASLCVKDDIQTEESLGANETEESQIAL 465
            N+K             +NLD  I  +    ETE     ++DI  EESLGA +  ESQ+AL
Sbjct: 601  NDKEQIKLQNGCSSTPENLDDKIERSTGSEETER--VREEDIHIEESLGAPKALESQMAL 658

Query: 464  KLCFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
            KL FTLPSSCYATMAIRELLKTSTSVAFHKA+N
Sbjct: 659  KLSFTLPSSCYATMAIRELLKTSTSVAFHKAMN 691


>ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            tuberosum]
          Length = 685

 Score =  851 bits (2199), Expect = 0.0
 Identities = 442/686 (64%), Positives = 525/686 (76%), Gaps = 8/686 (1%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXXX 2220
            M +++ESDVGI CYIS LPGFRGILKQRYSDFIVNEV LD NVVHLT L+ P E      
Sbjct: 1    MKTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLTLLEAPKECSENKD 60

Query: 2219 XXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 2040
                   +R +  EIESFR LAG++D +KLK  ID++ SG   + ES+VLSPSSDKSHRT
Sbjct: 61   VNISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 2039 AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDSRGS 1860
            AIHNFFKER+KFLVTDT+DG +  SKC+RVRL                    K YDSRGS
Sbjct: 121  AIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRSSRKRKDRDDKRYDSRGS 180

Query: 1859 DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTVFK 1680
            D+WP ++GKFLRFHL+KENKDTQE           + RSFGFAGTKDKR+VSTQRVTVFK
Sbjct: 181  DSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFK 240

Query: 1679 QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 1500
            Q+AS+LAALN++LIGIKVG+FCHV EGL+LGQL GNRFTITLR + AE+EDIIKA+A AL
Sbjct: 241  QQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVAL 300

Query: 1499 GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKE 1320
            GK+GFINYFGLQRFGSSS+PTHLIGAALLRGEW+AAV+++L+PREGEK+A   +REYYKE
Sbjct: 301  GKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNAISTVREYYKE 360

Query: 1319 SGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1140
            SGDI+GT+RQLPR+LVAE+AILQC ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SGDIDGTLRQLPRYLVAEKAILQCLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1139 SMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTDLSE 960
            SMRVQ +GF QVVLGDLVY  +E   KE  + V EC            +L+++  TDL E
Sbjct: 421  SMRVQKHGFDQVVLGDLVYSKEEYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 959  VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTESVH 780
             +N  VKVI++ED+ +G Y I+D++LPLPGSRV YPSN+IG++Y DLA+KD ISLTE+ H
Sbjct: 479  ERNIPVKVINEEDLKSGTYAIDDVLLPLPGSRVIYPSNDIGEVYCDLAQKDDISLTETAH 538

Query: 779  NSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVSD--S 606
              KEFS+TNMTGAYRRVFQKPKDFEWELL YTD  +PLAETD D+IA S  S +  +  +
Sbjct: 539  KIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIANSVKSKVREEDPT 598

Query: 605  NEKKNL--DSCILEAGRD----NETEASLCVKDDIQTEESLGANETEESQIALKLCFTLP 444
            N  K L  DS  +  G D       E  +  +  +Q+E+S      EESQ+ALKL FTLP
Sbjct: 599  NGSKELPADSSAISVGGDMLSGKVCEEKINNEAGMQSEKSQSGGNAEESQMALKLSFTLP 658

Query: 443  SSCYATMAIRELLKTSTSVAFHKALN 366
            +SCYATMA+RELLKTSTSVAFHK+LN
Sbjct: 659  ASCYATMAVRELLKTSTSVAFHKSLN 684


>ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            lycopersicum]
          Length = 685

 Score =  850 bits (2196), Expect = 0.0
 Identities = 440/686 (64%), Positives = 526/686 (76%), Gaps = 8/686 (1%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXXX 2220
            M +++ESDVGI CYIS LPGFRGILKQRYSDFIVNEV LD NVVHL +L+ P E      
Sbjct: 1    MKTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLNSLEAPKECSENKD 60

Query: 2219 XXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 2040
                   +R +  EIESFR LAG++D +KLK  ID++ SG   + ES+VLSPSSDKSHRT
Sbjct: 61   VNISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 2039 AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDSRGS 1860
             IHNFFKER+KFLVTDT+DG +  SKC+RVRL                    K YDSRGS
Sbjct: 121  EIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRYSRKRKDRNDKRYDSRGS 180

Query: 1859 DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTVFK 1680
            D+WP ++GKFLRFHL+KENKDTQE           + RSFGFAGTKDKR+VSTQRVTVFK
Sbjct: 181  DSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFK 240

Query: 1679 QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 1500
            Q+AS+LAALN++LIGIKVG+FCHV EGL+LGQL GNRFTITLR + AE+EDIIKA+A AL
Sbjct: 241  QQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVAL 300

Query: 1499 GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKE 1320
            GK+GFINYFGLQRFGSSS+PTHLIGAALLRGEW+AAV+++L+PREGEK+    +REYYKE
Sbjct: 301  GKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNTISTVREYYKE 360

Query: 1319 SGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1140
            SGDI+GT+RQLPR+LVAE+AILQ  ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SGDIDGTLRQLPRYLVAEKAILQSLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1139 SMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTDLSE 960
            SMRVQ +GF QVVLGDLVY  ++   KE  + V EC            +L+++  TDL E
Sbjct: 421  SMRVQKHGFDQVVLGDLVYSKEDYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 959  VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTESVH 780
             +N  VKVI++ED+ +G YTI+D++LPL GSRV YPSN+IG++Y DLA+KDGISLTE+ H
Sbjct: 479  ERNIPVKVINEEDLKSGTYTIDDVLLPLSGSRVIYPSNDIGEVYRDLAQKDGISLTETAH 538

Query: 779  NSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVSD--S 606
              KEFS+TNMTGAYRRVFQKPKDFEWELL YTD  +PLAETD D+IAKS  S ++ +  S
Sbjct: 539  KIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKSKVIEEVPS 598

Query: 605  NEKKNL--DSCILEAGRD----NETEASLCVKDDIQTEESLGANETEESQIALKLCFTLP 444
            N  K L  DS  +  G D       E ++  +  +Q+E+S      EESQ+ALKL FTLP
Sbjct: 599  NGSKELPADSSAISVGGDMLSGKVCEETINNEAGMQSEKSQSGGNAEESQMALKLSFTLP 658

Query: 443  SSCYATMAIRELLKTSTSVAFHKALN 366
            +SCYATMA+RELLKTSTSVAFHK+LN
Sbjct: 659  ASCYATMAVRELLKTSTSVAFHKSLN 684


>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  836 bits (2160), Expect = 0.0
 Identities = 434/692 (62%), Positives = 508/692 (73%), Gaps = 14/692 (2%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXXX 2220
            M  +EESDVGI  YIS+LPGFRGILKQRY DFIVNEV  DGNVVHLT+LD P E      
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 2219 XXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 2040
                   ++ ++ EIE FR L GD+DVE LK LIDQV SG+ +    +VLS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 2039 AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDSRGS 1860
            A+HNFFKE +KFLVTDT+DGPD+SSKCIRVRL                    KP+DSRGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 1859 DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTVFK 1680
            DNW E++GKFLRFHLYKENKDTQE           +PRSFGFAGTKDKRSVSTQRVTVFK
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 1679 QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 1500
            Q A+RLAALN++LIGIKVG+FCHV EGLVLGQL GNRFTITLR ++A++E+ IKA+A AL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 1499 GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKE 1320
            G+ GFINYFGLQRFGS S+PTHLIGAALLRGEW+ AV+++L+PREGE+DA RK REYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGERDAIRKAREYYKE 360

Query: 1319 SGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1140
            S DIEGT+RQ PRHLVAERAILQC ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1139 SMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTDLSE 960
            SMRVQNYG  QVVLGDLVYC  + +EK       E               +++  TDL E
Sbjct: 421  SMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 480

Query: 959  VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTESVH 780
             +N  VK +  ED+  G YTI+D++LPLPGSR  YP+N+I ++YHD AKKD ISLTES H
Sbjct: 481  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISLTESAH 540

Query: 779  NSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVS---- 612
            + KEFS+TNMTG +RRVFQKP DFEWELL YT+ N+PLAETD D I KS+ S ++     
Sbjct: 541  SVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITKSKPSNIIGGEDS 600

Query: 611  -DSNEKKNLDSCILEA---------GRDNETEASLCVKDDIQTEESLGANETEESQIALK 462
             + NEK+N   C+ ++           DN  E +   +  +   E    +   E+Q ALK
Sbjct: 601  RNGNEKENSFQCMKQSESFEHNVNLSTDN-NEPNGVTEIGLPQVEPQFESGAPEAQRALK 659

Query: 461  LCFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
            L FTLP+SCYATMAIRELLKTSTSVAF K LN
Sbjct: 660  LSFTLPASCYATMAIRELLKTSTSVAFQKTLN 691


>ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Populus trichocarpa]
            gi|550338143|gb|ERP60572.1| hypothetical protein
            POPTR_0005s05300g [Populus trichocarpa]
          Length = 752

 Score =  822 bits (2124), Expect = 0.0
 Identities = 432/722 (59%), Positives = 523/722 (72%), Gaps = 25/722 (3%)
 Frame = -2

Query: 2456 VKPFKLQSPLLL*NPC---LASMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVG 2286
            +KP+K Q   L  +     + S  S+EESDVGILCYIS+LPGFRGILKQRY+DFIVNEV 
Sbjct: 30   LKPYKGQPTRLATSRVPVPVPSTASMEESDVGILCYISQLPGFRGILKQRYADFIVNEVD 89

Query: 2285 LDGNVVHLTTLDCPSEIXXXXXXXXXXXXDRDFSQ------EIESFRVLAGDADVEKLKK 2124
             DGNVVHLT L+ P ++            D   S+      EIE FR LAGD+D EKL+ 
Sbjct: 90   TDGNVVHLTCLEPPPQMVEETKECGAKVSDEKMSESKSYEAEIELFRSLAGDSDAEKLES 149

Query: 2123 LIDQVVS--GVHNNGESVVLSPSSDKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRV 1950
            LI QV S  G  ++   +VLSP SDK+HRTA+HNFFK+  KFLVTDT DGPD+SSKCIRV
Sbjct: 150  LISQVDSCTGSEDSVPHIVLSPDSDKTHRTAVHNFFKQNFKFLVTDTTDGPDASSKCIRV 209

Query: 1949 RLXXXXXXXXXXXXXXXXXXXXKPYDSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXX 1770
            RL                    KP+DSRGS NWPE++GKFLRFHLYKENKDTQE      
Sbjct: 210  RLDSGGHKNNGRNSKKRKERGEKPFDSRGSSNWPEHLGKFLRFHLYKENKDTQEALGIIG 269

Query: 1769 XXXXXKPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVL 1590
                 + +SFGFAGTKDKR+VSTQRVTVFKQ+ASRLAALN +LIGIKVG+FCHV EGL+L
Sbjct: 270  KMLGIQSKSFGFAGTKDKRAVSTQRVTVFKQQASRLAALNDRLIGIKVGDFCHVKEGLLL 329

Query: 1589 GQLQGNRFTITLRSIIAENEDIIKAAATALGKNGFINYFGLQRFGSSSIPTHLIGAALLR 1410
            G+L GNRFT+TLR +IA++ED IKAAA +LG++GFINYFGLQRFG+ S+PTHLIGAALLR
Sbjct: 330  GRLLGNRFTVTLRGVIADSEDTIKAAADSLGRHGFINYFGLQRFGTGSVPTHLIGAALLR 389

Query: 1409 GEWQAAVNMVLEPREGE-----KDATRKIREYYKESGDIEGTIRQLPRHLVAERAILQCF 1245
            GEW+ AV+M+L+PREG+         RK REYYKES DIEGT+RQLPRHLVAERA+LQC 
Sbjct: 390  GEWKTAVSMILDPREGDILLLFPYVIRKAREYYKESNDIEGTLRQLPRHLVAERAVLQCL 449

Query: 1244 RQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASMRVQNYGFHQVVLGDLVYCNKEGS 1065
            ++CPG+YLQA+ AIPRTLRMMYVH YQSYLWNHAAS RVQ YGF QV+LGDLVYC  + S
Sbjct: 450  KKCPGDYLQAMKAIPRTLRMMYVHGYQSYLWNHAASERVQKYGFDQVLLGDLVYCKGDDS 509

Query: 1064 EKEMITSVLECGXXXXXXXXXXXDLEDVPVTDLSEVQNASVKVISKEDIAAGKYTIEDII 885
            EKE +    EC             L++   TDL E +N  VKV++ ED++ G YT++D++
Sbjct: 510  EKETVGVNSECNDDNCDDTYDCSHLDETSGTDLLERKNTLVKVVTVEDMSTGNYTVDDVV 569

Query: 884  LPLPGSRVSYPSNEIGKIYHDLAKKDGISLTESVHNSKEFSLTNMTGAYRRVFQKPKDFE 705
            LP+PGSRV +P+NEI K+YHDLAKKD I+LTESVH  KEFS+T+MTG+YRRVFQKP DFE
Sbjct: 570  LPMPGSRVIFPTNEIAKVYHDLAKKDAINLTESVHRVKEFSITSMTGSYRRVFQKPLDFE 629

Query: 704  WELLKYTDVNLPLAETDLDIIAKSRASTLVSD-----SNEKKNLDSCI-LEAGRDNETEA 543
            WELL Y D N PLAETDLD I+K+ ++ ++        +E  +L  C  L     N    
Sbjct: 630  WELLTYNDSNKPLAETDLDKISKTGSTNIIKQEEQGKGDEDNDLSDCTKLPVCSRNSIAL 689

Query: 542  SLCVKDDIQTE---ESLGANETEESQIALKLCFTLPSSCYATMAIRELLKTSTSVAFHKA 372
            S    ++ + E   E +  +  +E+Q+ALKL  TLP+SCYATMAIRELLKTSTSVA+HK 
Sbjct: 690  SSDTNEESEREVESEQVSGSNWQETQMALKLSLTLPASCYATMAIRELLKTSTSVAYHKT 749

Query: 371  LN 366
            LN
Sbjct: 750  LN 751


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  822 bits (2122), Expect = 0.0
 Identities = 430/692 (62%), Positives = 504/692 (72%), Gaps = 14/692 (2%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXXX 2220
            M  +EESDVGI  YIS+LPGFRGILKQRY DFIVNEV  DGNVVHLT+LD P E      
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 2219 XXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 2040
                   ++ ++ EIE FR L GD+DVE LK LIDQV SG+ +    +VLS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 2039 AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDSRGS 1860
            A+HNFFKE +KFLVTDT+DGPD+SSKCIRVRL                    KP+DSRGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 1859 DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTVFK 1680
            DNW E++GKFLRFHLYKENKDTQE           +PRSFGFAGTKDKRSVSTQRVTVFK
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 1679 QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 1500
            Q A+RLAALN++LIGIKVG+FCHV EGLVLGQL GNRFTITLR ++A++E+ IKA+A AL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 1499 GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKE 1320
            G+ GFINYFGLQRFGS S+PTHLIGAALLRGEW+ AV+++L+PREG+     K REYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGD-ILLLKAREYYKE 359

Query: 1319 SGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAA 1140
            S DIEGT+RQ PRHLVAERAILQC ++ PGNYLQAL AIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 360  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 419

Query: 1139 SMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTDLSE 960
            SMRVQNYG  QVVLGDLVYC  + +EK       E               +++  TDL E
Sbjct: 420  SMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 479

Query: 959  VQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTESVH 780
             +N  VK +  ED+  G YTI+D++LPLPGSR  YP+N+I ++YHD AKKD ISLTES H
Sbjct: 480  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISLTESAH 539

Query: 779  NSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVS---- 612
            + KEFS+TNMTG +RRVFQKP DFEWELL YT+ N+PLAETD D I KS+ S ++     
Sbjct: 540  SVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITKSKPSNIIGGEDS 599

Query: 611  -DSNEKKNLDSCILEA---------GRDNETEASLCVKDDIQTEESLGANETEESQIALK 462
             + NEK+N   C+ ++           DN  E +   +  +   E    +   E+Q ALK
Sbjct: 600  RNGNEKENSFQCMKQSESFEHNVNLSTDN-NEPNGVTEIGLPQVEPQFESGAPEAQRALK 658

Query: 461  LCFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
            L FTLP+SCYATMAIRELLKTSTSVAF K LN
Sbjct: 659  LSFTLPASCYATMAIRELLKTSTSVAFQKTLN 690


>gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus notabilis]
          Length = 784

 Score =  816 bits (2108), Expect = 0.0
 Identities = 420/683 (61%), Positives = 508/683 (74%), Gaps = 11/683 (1%)
 Frame = -2

Query: 2402 SMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXX 2223
            +M +++ESDVGI CYIS LPGFRGILKQRYSDFIVNEV  DGNVVHLT+LD P E     
Sbjct: 59   AMKTLDESDVGIFCYISNLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPETREET 118

Query: 2222 XXXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHR 2043
                     + ++ EIESFR LAGD+D E L+ LI+Q+ SG       +VLSPSSDKSHR
Sbjct: 119  RTETIDAGTKSYTSEIESFRCLAGDSDAESLEALINQINSGGGEEVSPIVLSPSSDKSHR 178

Query: 2042 TAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDSRG 1863
            T IHNFFK+  KFLVTDT+DGPD+SSKCIRVRL                    KP+D RG
Sbjct: 179  TEIHNFFKKNFKFLVTDTVDGPDASSKCIRVRLNSGRHNNHGRNSKKRKERGDKPFDRRG 238

Query: 1862 SDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTVF 1683
            SD+WPE++GKFLRFHLYKENKD+QE           +PRSFGFAGTKDKRSVSTQRVTVF
Sbjct: 239  SDDWPEHVGKFLRFHLYKENKDSQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVF 298

Query: 1682 KQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATA 1503
            KQRASRLAALN +LIGI+VG+FC+V E LVLGQL GNRFT+TLR ++A++E+ IKA+A+A
Sbjct: 299  KQRASRLAALNDRLIGIQVGDFCYVKEELVLGQLSGNRFTVTLRGVVADSEETIKASASA 358

Query: 1502 LGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGE--KDATRKIREY 1329
            LG+ GFINYFGLQRFGS S+PT+LIGA L RGEW+ AV+M+L+PREG+   D   K REY
Sbjct: 359  LGRRGFINYFGLQRFGSGSVPTYLIGAMLFRGEWKDAVHMILDPREGDILLDVITKAREY 418

Query: 1328 YKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWN 1149
            YKE+ DI+GT+RQLPRHLVAE AILQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWN
Sbjct: 419  YKETNDIDGTLRQLPRHLVAENAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWN 478

Query: 1148 HAASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTD 969
            HAAS RVQ YG  QVV+GDLV+C +   EK   T+  +C            D+++V   +
Sbjct: 479  HAASTRVQKYGTDQVVVGDLVFCKEHNIEKVKGTASADCKDEDSNAIFGSHDIDEVSGAE 538

Query: 968  LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTE 789
            L E +N  VKV++ EDI AG + I+D++LPLPGSRV  P+N+I ++YHDLAKKD ISLTE
Sbjct: 539  LPEERNNPVKVVAAEDILAGNFAIDDVVLPLPGSRVILPTNDIAQVYHDLAKKDAISLTE 598

Query: 788  SVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVSD 609
            S HN KEFS+T+MTG+YRRVFQKP D+EWELL YT+  +PLAETDLDIIAKS+ + +  +
Sbjct: 599  SAHNVKEFSITSMTGSYRRVFQKPVDYEWELLTYTNGTIPLAETDLDIIAKSKPAHVAEE 658

Query: 608  SNEKKNLDSCILEAGRDNETEASLCVKD---------DIQTEESLGANETEESQIALKLC 456
            +    N +S   +  +  E EA L   D         ++Q E + G N ++E Q+ALKL 
Sbjct: 659  NEVNGNEES--TKRSKRVENEAVLQTDDNKVDGEREAELQAESTCGTN-SQEPQMALKLS 715

Query: 455  FTLPSSCYATMAIRELLKTSTSV 387
            FTLP+SCYATMAIRELLKTSTSV
Sbjct: 716  FTLPASCYATMAIRELLKTSTSV 738


>ref|XP_007030612.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
            gi|508719217|gb|EOY11114.1| Pseudouridine synthase family
            protein isoform 2 [Theobroma cacao]
          Length = 732

 Score =  813 bits (2099), Expect = 0.0
 Identities = 424/704 (60%), Positives = 518/704 (73%), Gaps = 13/704 (1%)
 Frame = -2

Query: 2438 QSPLLL*NPCLASMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLT 2259
            ++P++  +  L  MT++ ESDVGILC+IS LPGFRGILKQRYSDFIVNEV  +GNVVHLT
Sbjct: 30   KTPVIKSSNSLTLMTTITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLT 89

Query: 2258 TLDCPSEIXXXXXXXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGES 2079
            +LD P E             ++ ++ EI  FR LAGD D ++L+  I+Q+ SG   +   
Sbjct: 90   SLDAPPEAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICP 149

Query: 2078 VVLSPSSDKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXX 1899
            +VLSP SDKSHRTA+HNFFKE ++FLVTDT+DGPDSSSKCIRVRL               
Sbjct: 150  IVLSPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRK 209

Query: 1898 XXXXXKPYDSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKD 1719
                  PYDSRGS +WPE++GKFLRFHLYKENKDTQE           +PRSFGFAGTKD
Sbjct: 210  ERGDK-PYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKD 268

Query: 1718 KRSVSTQRVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIA 1539
            KRSVSTQRVTVFKQ ASRLAALN++LIGIKVG+FC+V +  +LGQL GNRFTI LR I+A
Sbjct: 269  KRSVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVA 328

Query: 1538 ENEDIIKAAATALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGE 1359
            ++E+ IKA+  +LG++GFINYFGLQRFGS SIPTH IGA LLRGEWQAA + +L+PREGE
Sbjct: 329  DSEETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGE 388

Query: 1358 KDATRKIREYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMY 1179
            +D   K REYYKE+GDIEGT+RQLPRHLVAERA+LQC ++CPGNYLQAL AIPRTLRMMY
Sbjct: 389  RDFVSKAREYYKETGDIEGTLRQLPRHLVAERAMLQCLKKCPGNYLQALKAIPRTLRMMY 448

Query: 1178 VHSYQSYLWNHAASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXX 999
            VHSYQSYLWNHAASMRV+ YG ++VVLGDLVYC    +EK  +    E            
Sbjct: 449  VHSYQSYLWNHAASMRVEKYGSNEVVLGDLVYCKGNDAEKVKVVP-SEHEDNNFEDAYDC 507

Query: 998  XDLEDVPVTDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDL 819
              L+++  TDL E +N  VK I+  DI+ G YTIED++LP+PGSR+ YP N+I  +YHD+
Sbjct: 508  SQLDEISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHDM 567

Query: 818  AKKDGISLTESVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIA 639
            AKKDGISLTESVHN KEFS+T+MTG+YRRVFQKP DFEWELL YTD ++ L+ETDLD IA
Sbjct: 568  AKKDGISLTESVHNIKEFSITSMTGSYRRVFQKPIDFEWELLSYTDGSIALSETDLDKIA 627

Query: 638  KSRASTLV-----SDSNEKKNLDSCI--LEAGRDNETEASLCVKDDIQTE------ESLG 498
            K++   LV     +D  E ++    +  +E+  D++  ++  V+ +   E       SL 
Sbjct: 628  KTKPVNLVKEEKPTDGTEGQDSSDHMEHIESFEDDKKFSTGNVEVEGSREAEPPQIHSLP 687

Query: 497  ANETEESQIALKLCFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
             + +  +Q ALKL FTLP+SCYATMAIRELLKTSTSVAFHK LN
Sbjct: 688  ESNSLGTQKALKLAFTLPASCYATMAIRELLKTSTSVAFHKTLN 731


>ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Citrus sinensis]
          Length = 739

 Score =  812 bits (2098), Expect = 0.0
 Identities = 419/696 (60%), Positives = 514/696 (73%), Gaps = 17/696 (2%)
 Frame = -2

Query: 2402 SMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSE--IXX 2229
            +M +V+ESD GILC+IS LPGFRGILKQRY DFIVNEV  D  VVHLT+LD P E     
Sbjct: 44   TMKTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVE 103

Query: 2228 XXXXXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNG-ESVVLSPSSDK 2052
                      +R ++ EIESFR LAGD+D + L+ LI+QV SG + +    +VLS +SDK
Sbjct: 104  HNETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDK 163

Query: 2051 SHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXK-PY 1875
            SHRTAIHNFFK+  KFLVTDT+DGPD+SSKCIRVRL                      P+
Sbjct: 164  SHRTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPF 223

Query: 1874 DSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQR 1695
            DSRGS+NWPE +GKFLRFHLYKENKDTQE            PRSFGFAGTKDKRSVSTQR
Sbjct: 224  DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 283

Query: 1694 VTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKA 1515
            VTVFKQRAS+LAALN++LIGI++G+FC+V EGL+LGQL GNRFTITLR ++ ++ED+IKA
Sbjct: 284  VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 343

Query: 1514 AATALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIR 1335
            +A +LG+NGFINYFGLQRFGS S+PTHL+GA LLRGEW++AV M+L+PREGE++   K R
Sbjct: 344  SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAR 403

Query: 1334 EYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYL 1155
            EYYKE+ DI+GT+R+LPRHLVAERAILQC ++CPGNYLQAL AIPRTLRMMYVHSYQS+L
Sbjct: 404  EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFL 463

Query: 1154 WNHAASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPV 975
            WNHAAS RVQ +G   VV+GDLV+C  + +EKE+     E              L++VP 
Sbjct: 464  WNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPE 523

Query: 974  TDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISL 795
            TD  + ++  VK ++ EDI +GKYTI+D++LPLPGSRV YP N++ ++YH LA+KDGI+L
Sbjct: 524  TDHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINL 583

Query: 794  TESVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLV 615
            TES+HN KEFS+T+MTG YRRVFQKP DFEWELL Y D N PLAETDLD IAK + + +V
Sbjct: 584  TESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLANIV 643

Query: 614  SD-----SNEKKNLDSCILEAGR-------DNETEASLCVKDDIQTE-ESLGANETEESQ 474
             +      N+KK+   C+ ++           E   + C K+  Q   ES+   +++  Q
Sbjct: 644  KEEEAVCGNKKKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQ 703

Query: 473  IALKLCFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
            +ALKL  TLPSSCYATMAIRELLKTSTSVAFHK LN
Sbjct: 704  MALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 739


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  811 bits (2095), Expect = 0.0
 Identities = 425/704 (60%), Positives = 522/704 (74%), Gaps = 26/704 (3%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXXX 2220
            MT++EESDVGI CYISK+PGFRGILKQRYSDFIVNEV  +GNVVHLT+L  P EI     
Sbjct: 49   MTTIEESDVGISCYISKVPGFRGILKQRYSDFIVNEVDNNGNVVHLTSLHVPREIVEVAE 108

Query: 2219 XXXXXXXD---RDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHN-NGESVVLSPSSDK 2052
                   +   ++++ EIESFR LAGDAD ++L+  I+QV+S  +  N   ++LSP SDK
Sbjct: 109  EREEEITNQVGKNYAAEIESFRELAGDADTQRLEAFINQVISEDNCINISPILLSPDSDK 168

Query: 2051 SHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXK-PY 1875
            +HRTA HNFFKE++KFLVTDT+DGPD+SSKCIRVRL                      P+
Sbjct: 169  AHRTATHNFFKEKLKFLVTDTVDGPDASSKCIRVRLNSRGNINEGNRNSKKRKDRNDKPF 228

Query: 1874 DSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQR 1695
            DSRGSD+WPE++GKFLRFHLYKENKDTQE           +PRSFGFAGTKDKRSVSTQR
Sbjct: 229  DSRGSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQR 288

Query: 1694 VTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKA 1515
            VTVFKQ ASRLAALN +LIGIKVG+FC+VNEGL+LGQL GNRFT+TLR ++A++ED IK 
Sbjct: 289  VTVFKQHASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVTLRGVVADSEDTIKG 348

Query: 1514 AATALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDA----- 1350
            +A +LG++GFINYFGLQRFGS S+PTHLIGAALLRGEW+ AV+M+L+PREG+        
Sbjct: 349  SADSLGRHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMILDPREGDILLLVICF 408

Query: 1349 --TRKIREYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYV 1176
               R  REYYKES DI+GT+RQLPR+L AERA+LQC ++CPGNYLQAL AIPRTLRMMYV
Sbjct: 409  MWMRMAREYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQALKAIPRTLRMMYV 468

Query: 1175 HSYQSYLWNHAASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXX 996
            HSYQSYLWNHAASMRVQ YG  QVV+GDLVYC  + +E+E+ ++   C            
Sbjct: 469  HSYQSYLWNHAASMRVQKYGTDQVVVGDLVYCKGDDTEREIGSANSACEDDDCEDMYGCS 528

Query: 995  DLEDVPVTDLSEVQNASVKV---ISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYH 825
            +L++   TDLSE ++  VKV   ++ ED++ G YTI D+ILP+PGSRVSYP+N+I K+YH
Sbjct: 529  NLDETSGTDLSERKDTLVKVEQAVNAEDLSTGNYTINDVILPMPGSRVSYPTNDIAKVYH 588

Query: 824  DLAKKDGISLTESVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDI 645
            DLA+KD I+L ESVH++KEFS+T+MTG+YRRVFQKP DFEWE+L YTD   PLAETD++ 
Sbjct: 589  DLAEKDAINLAESVHSAKEFSITSMTGSYRRVFQKPMDFEWEILSYTDGTTPLAETDMEK 648

Query: 644  IAKSRASTLVSDSNEKKN----LDSCI---LEAGRDNETEASLCVKDDIQTE----ESLG 498
            +AK+++  L  +   KKN       C+   + +G D    A    + + + E    E L 
Sbjct: 649  LAKAKSIELNKEEETKKNDTKSPSDCMRQPMSSGNDLHLSAEYNREGEREVEVAKVEPLY 708

Query: 497  ANETEESQIALKLCFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
               T  +Q ALKL FTLP+SCYATMAIRELLKTSTSVAFHK LN
Sbjct: 709  GPNTRGAQTALKLTFTLPASCYATMAIRELLKTSTSVAFHKTLN 752


>ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 693

 Score =  799 bits (2064), Expect = 0.0
 Identities = 412/694 (59%), Positives = 510/694 (73%), Gaps = 18/694 (2%)
 Frame = -2

Query: 2393 SVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXXXXX 2214
            + +ES+VGI CYIS LPGFRGILKQRYSDF+VNEV ++GNVVHLT L+ P E+       
Sbjct: 2    TTQESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAK 61

Query: 2213 XXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRTAI 2034
                  +D+S EIE FR LA   DVE+L+  I +V SG  +    +VLSP  DK HRTA+
Sbjct: 62   TEDAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAV 121

Query: 2033 HNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDSRGSDN 1854
            HNFFKE +KFLVTD +DGPD+SSKCIRVRL                    KP+DSRG D+
Sbjct: 122  HNFFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDD 181

Query: 1853 WPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTVFKQR 1674
            W E++GKFLRFHL+KENKDTQE           +PR+FGFAGTKDKR+V+ QRVTVFKQ 
Sbjct: 182  WSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQF 241

Query: 1673 ASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATALGK 1494
            ASRLAALN +LIGIKVG+FC+V EGL LGQL GNRFTITLR ++A++EDII+A+A ALGK
Sbjct: 242  ASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGK 301

Query: 1493 NGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKESG 1314
             GF+NYFGLQRFGS SIPTHLIGA+LLRGEW++ V+M+LEPREGE+D   + R+YYKES 
Sbjct: 302  QGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESN 361

Query: 1313 DIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASM 1134
            DI+GT+R+LPR+LVAERA+LQC ++CPGNY QAL A+PRTLRMMYVHSYQSYLWNHAASM
Sbjct: 362  DIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASM 421

Query: 1133 RVQNYGFHQVVLGDLVYCNKEGSEKEMITSVL--EC-----GXXXXXXXXXXXDLEDVPV 975
            RVQ YG  +VV+GDLVYC  +G E E +T ++  EC                  L+D+  
Sbjct: 422  RVQKYGTDRVVVGDLVYC--KGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISE 479

Query: 974  TDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISL 795
            T++ E + + VK ++ EDI  G YTI+DI+LPLPGSRV +P N+I  ++HDLAKKDGISL
Sbjct: 480  TNVPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGISL 539

Query: 794  TESVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLV 615
            TESVHN KEFS+TN+TG+YRRVFQKP DFEW++LKY D N+PL ETD + IAK++   + 
Sbjct: 540  TESVHNVKEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVNVN 599

Query: 614  SDSNEKKNLDSCILEAGRDNE---TEASLCVKD-DIQTE-------ESLGANETEESQIA 468
             +     + D  + +  + +E    +  L  KD ++++E       ESLG    + +QIA
Sbjct: 600  KEYPTGVSGDGSLHDRIKQSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQIA 659

Query: 467  LKLCFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
            LKL FTLP+SCYATMAIRELLKTSTSVAFHK LN
Sbjct: 660  LKLSFTLPASCYATMAIRELLKTSTSVAFHKTLN 693


>ref|XP_007208186.1| hypothetical protein PRUPE_ppa020985mg [Prunus persica]
            gi|462403828|gb|EMJ09385.1| hypothetical protein
            PRUPE_ppa020985mg [Prunus persica]
          Length = 691

 Score =  797 bits (2058), Expect = 0.0
 Identities = 411/678 (60%), Positives = 500/678 (73%), Gaps = 7/678 (1%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXXX 2220
            M + EE DVGI CYIS+LPGFRGILKQRYSDF+VNEV  + NVVHLT LD P+E      
Sbjct: 1    MKTTEEPDVGIFCYISQLPGFRGILKQRYSDFMVNEVDTEENVVHLTNLDAPAETVKEIE 60

Query: 2219 XXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRT 2040
                    +D++ EIESFR L    D E+L+ +I+Q+ SG  ++   +VLSP  DKSHRT
Sbjct: 61   TKTHDATSKDYTTEIESFRSLVDPDDAERLEAIINQINSGSEDSILPIVLSPDYDKSHRT 120

Query: 2039 AIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDSRGS 1860
            A+HNFFKE  KFLVTDT+DGPD+SSKCIRVR+                    KP+DSRGS
Sbjct: 121  AVHNFFKENFKFLVTDTVDGPDASSKCIRVRINSGGQNSRGRNSRKRKERGDKPFDSRGS 180

Query: 1859 DNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTVFK 1680
            D+W EN+GKFLRFHLYKENKDTQE           +PRSFGFAGTKDKR+V+TQRVTVFK
Sbjct: 181  DDWSENVGKFLRFHLYKENKDTQEALGIIAKMLGIQPRSFGFAGTKDKRAVTTQRVTVFK 240

Query: 1679 QRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATAL 1500
            Q ASRLAALN +LIGIKVG+FC+V EGLVLGQL GNRFTITLR ++A++ED IKA+  AL
Sbjct: 241  QLASRLAALNDRLIGIKVGDFCYVKEGLVLGQLLGNRFTITLRGVVADSEDTIKASVIAL 300

Query: 1499 GKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGE--KDATRKIREYY 1326
            GK GFINYFGLQRFGS S+PTHLIGA LLRGEW++ V++ L+PREG+         REYY
Sbjct: 301  GKQGFINYFGLQRFGSGSVPTHLIGATLLRGEWKSTVSLFLDPREGDILLMLLGIAREYY 360

Query: 1325 KESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1146
            KE+ DIEGT+RQLPRHLV+E+AILQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWNH
Sbjct: 361  KETNDIEGTLRQLPRHLVSEKAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNH 420

Query: 1145 AASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVL--ECGXXXXXXXXXXXDLEDVPVT 972
            AASMRVQ YG  +VVLGDLVYC  +G+E E ++ V+  +C            DL+D+  T
Sbjct: 421  AASMRVQKYGTDRVVLGDLVYC--KGNETEKVSEVVSSKCVDENGNDTLDPIDLDDISGT 478

Query: 971  DLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLT 792
            +L E +   VK ++ EDI +G YTI+D++LP+PGSRV +P N+I  ++HDLAKKD ISLT
Sbjct: 479  NLPEERLNLVKAVTAEDILSGNYTIDDVVLPMPGSRVIFPENDIAHVFHDLAKKDAISLT 538

Query: 791  ESVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVS 612
            ESVHN KEFS+T+MTG+YRRVFQKP DFEWE+LKY D N PL +TD D IAK++ S+L  
Sbjct: 539  ESVHNVKEFSITSMTGSYRRVFQKPMDFEWEILKYIDGNKPLVDTDFDKIAKTKPSSLNE 598

Query: 611  DS--NEKKNLDSCI-LEAGRDNETEASLCVKDDIQTEESLGANETEESQIALKLCFTLPS 441
            D   ++K     C+  + G   +   +    +++   ESL     +E+Q ALKL FTLP+
Sbjct: 599  DGRLHDKTKQSECLDNDIGLQTDDNGAKAKGEELPQAESLCDTNPQETQTALKLSFTLPA 658

Query: 440  SCYATMAIRELLKTSTSV 387
            SCYATMAIRELLKTSTSV
Sbjct: 659  SCYATMAIRELLKTSTSV 676


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  796 bits (2055), Expect = 0.0
 Identities = 418/693 (60%), Positives = 513/693 (74%), Gaps = 12/693 (1%)
 Frame = -2

Query: 2408 LASMT--SVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSE- 2238
            +A MT  SV ESDVGIL YIS LPGFRGILKQRYSDFIVNEV  DGNVVHLT+LD P E 
Sbjct: 35   IAVMTTKSVGESDVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEV 94

Query: 2237 IXXXXXXXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSS 2058
            I             + ++ EIE FR LAGD+D E L+  + Q+ SGV+++   +V SP +
Sbjct: 95   IVSESGPTIVHSTSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSPDT 154

Query: 2057 DKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKP 1878
            DK+HRTA+HNFFK + KFLVTDT+DGPDSSSKC+RVR+                    KP
Sbjct: 155  DKTHRTAVHNFFK-KFKFLVTDTIDGPDSSSKCVRVRVDSGAQNNRGRFSKKRKERGDKP 213

Query: 1877 YDSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQ 1698
            +DSRGSDNWPE++GKFLRFHLYKENKDTQE           + RSFGFAGTKDKRS+STQ
Sbjct: 214  FDSRGSDNWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRSISTQ 273

Query: 1697 RVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIK 1518
            RVTVFKQ ASR+AALN +LIGIK+GNF ++ EGL+LGQL GNRFTITLR ++A +ED+IK
Sbjct: 274  RVTVFKQHASRIAALNDRLIGIKLGNFSYIQEGLLLGQLLGNRFTITLRGVVANSEDVIK 333

Query: 1517 AAATALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKI 1338
            A+A ALG++GFINYFGLQRFGS S+PTHL+GA+LLRGEW+ AVNM+L+PREG+     + 
Sbjct: 334  ASAEALGRHGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGDILLLMRA 393

Query: 1337 REYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSY 1158
            R+YYKES DI+GT++QLPR+LVAERAILQC ++CPGNYLQAL AIPRTLRMMYVHSYQSY
Sbjct: 394  RDYYKESDDIDGTLKQLPRYLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSY 453

Query: 1157 LWNHAASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLE-----CGXXXXXXXXXXXD 993
            LWNHAASMRVQ YG  +VV+GDLVYC +  +E   + +  E     CG            
Sbjct: 454  LWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCG---DANSYDSCH 510

Query: 992  LEDVPVTDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAK 813
            LE+V    L   ++  VK ++  D+ +G +TI+D++LPLPGSRV YP+N+I ++Y+DLA 
Sbjct: 511  LEEVCKLGLPTERHKLVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTNDIAEVYNDLAT 570

Query: 812  KDGISLTESVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKS 633
            KD ISLT SVHN KEFS+T+MTG+YRRVFQ+PKD+EWEL+ Y D NLPLA++DL  + KS
Sbjct: 571  KDSISLTNSVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKS 630

Query: 632  RASTLVSDSNEKKNLDSCILEAGRDNETEASLCVKDDIQTEESLGANE----TEESQIAL 465
            ++   V  S E+K  D    E   D+ T+ S+C K +IQ E     NE    T++ Q+AL
Sbjct: 631  QS---VEISKEEKIADKSKNEDSLDS-TDQSVCCKKNIQLEAGGKENENGQGTQDPQMAL 686

Query: 464  KLCFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
            KL FTLP+S YATMAIRELLKTSTSVAFHK LN
Sbjct: 687  KLSFTLPASSYATMAIRELLKTSTSVAFHKTLN 719


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
            gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820
            [Arabidopsis thaliana] gi|61742699|gb|AAX55170.1|
            hypothetical protein At3g04820 [Arabidopsis thaliana]
            gi|332640619|gb|AEE74140.1| pseudouridine synthase
            [Arabidopsis thaliana]
          Length = 715

 Score =  791 bits (2044), Expect = 0.0
 Identities = 408/684 (59%), Positives = 505/684 (73%), Gaps = 6/684 (0%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSE--IXXX 2226
            M +V+E+DVGI C+IS+LPGFRGILKQRY+DFIVNEV +DGNVVHLT+LD P E  +   
Sbjct: 37   MKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDLPPEMAVKEE 96

Query: 2225 XXXXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSH 2046
                      ++++  +ESF+ ++   D E+L+ LI+QV SG       VVL PSSDKS 
Sbjct: 97   DKAKSCDNVPQNYTSAVESFKSISSVTDAERLEILINQVTSGTDGEVLPVVLDPSSDKSK 156

Query: 2045 RTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDSR 1866
            RTAIHNF KE  KFLVTDT+DGPDS+SKCIRVR+                    KP+DSR
Sbjct: 157  RTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRKERGDKPFDSR 216

Query: 1865 GSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTV 1686
            GS++WPE++GKFLRFHLYKENKDTQE           +P+SFGF+GTKDKRSVSTQRVTV
Sbjct: 217  GSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTV 276

Query: 1685 FKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAAT 1506
            FKQ+AS+LAALN++L GIKVG+FC+V EGL+LGQL GNRFTITLR ++A++E+ IK +A 
Sbjct: 277  FKQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETIKQSAE 336

Query: 1505 ALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYY 1326
            +LGK+GFINYFGLQRFGS S+PTH +GAALL+GEW+ AV+M+L+PRE E+      REYY
Sbjct: 337  SLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDAVDMILDPRETERHVVNDAREYY 396

Query: 1325 KESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNH 1146
            KE+GDI+GT+RQLPR+LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYLWN+
Sbjct: 397  KETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNN 456

Query: 1145 AASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTDL 966
            AAS+RV+NYG  QVVLGDLV   K  + K M+ S+                ++D  V DL
Sbjct: 457  AASLRVKNYGTSQVVLGDLV-STKVDAAKRMVDSLTSEHNESSEEALDCDQVDDTAVVDL 515

Query: 965  SEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTES 786
               ++  VKV+S ED+ AG Y+  DI+LPLPGSRV YPSN+I +IYHDLAKKDGISLTES
Sbjct: 516  PAERSDLVKVVSIEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKKDGISLTES 575

Query: 785  VHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVSDS 606
            +H  KEFS+T+MTG YRRVFQKP DFEWELL YTD N PLAETDLD I  ++    V  +
Sbjct: 576  IHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRIPMNKPVEKVGST 635

Query: 605  ----NEKKNLDSCILEAGRDNETEASLCVKDDIQTEESLGANETEESQIALKLCFTLPSS 438
                +E    D+   ++G  N  + +    D  + E+  G  ++E++Q+ALK+  TLPSS
Sbjct: 636  EEIEDESMKSDTNPHDSGETNLKDQT----DSNEAEKDTGNPDSEQTQMALKMALTLPSS 691

Query: 437  CYATMAIRELLKTSTSVAFHKALN 366
            CYATMAIRELLKTSTSVA+HK LN
Sbjct: 692  CYATMAIRELLKTSTSVAYHKTLN 715


>ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citrus clementina]
            gi|557535111|gb|ESR46229.1| hypothetical protein
            CICLE_v10003382mg [Citrus clementina]
          Length = 697

 Score =  791 bits (2042), Expect = 0.0
 Identities = 412/689 (59%), Positives = 506/689 (73%), Gaps = 17/689 (2%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSE--IXXX 2226
            M +V+ESD GILC+IS LPGFRGILKQRY DFIVNEV  D  VVHLT+LD P E      
Sbjct: 1    MKTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEH 60

Query: 2225 XXXXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNG-ESVVLSPSSDKS 2049
                     +R ++ EIESFR LAGD+D + L+ LI+QV SG + +    +VLS +SDKS
Sbjct: 61   NETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKS 120

Query: 2048 HRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXK-PYD 1872
            HRTAIHNFFK+  KFLVTDT+DGPD+SSKCIRVRL                      P+D
Sbjct: 121  HRTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFD 180

Query: 1871 SRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRV 1692
            SRGS+NWPE +GKFLRFHLYKENKDTQE            PRSFGFAGTKDKRSVSTQRV
Sbjct: 181  SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 240

Query: 1691 TVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAA 1512
            TVFKQRAS+LAALN++LIGI++G+FC+V EGL+LGQL GNRFTITLR ++ ++ED+IKA+
Sbjct: 241  TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 300

Query: 1511 ATALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIRE 1332
            A +LG+NGFINYFGLQRFGS S+PTHL+GA LLRGEW++AV M+L+PREG+     K RE
Sbjct: 301  ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGD-ILLFKARE 359

Query: 1331 YYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLW 1152
            YYKE+ DI+GT+R+LPRHLVAERAILQC ++CPGNYLQAL AIPRTLRMMYVHSYQS+LW
Sbjct: 360  YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 419

Query: 1151 NHAASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVT 972
            NHAAS RVQ +G   VV+GDLV+C  + +EKE+     E              L++VP T
Sbjct: 420  NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 479

Query: 971  DLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLT 792
            D  + ++  VK ++ EDI +GKYTI+D++LPLPGSRV YP N++ ++YH LA+KDGI+LT
Sbjct: 480  DHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 539

Query: 791  ESVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVS 612
            ES+HN KEFS+T+MTG YRRVFQKP DFEWELL Y D N PLAETDLD IAK + + +V 
Sbjct: 540  ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLANIVK 599

Query: 611  D-----SNEKKNLDSCILEAGR-------DNETEASLCVKDDIQTE-ESLGANETEESQI 471
            +      N+KK+   C+ ++           E   + C K+  Q   ES+   +++  Q+
Sbjct: 600  EEEAVCGNKKKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQM 659

Query: 470  ALKLCFTLPSSCYATMAIRELLKTSTSVA 384
            ALKL  TLPSSCYATMAIRELLKTSTSV+
Sbjct: 660  ALKLGLTLPSSCYATMAIRELLKTSTSVS 688


>ref|XP_007030611.1| Pseudouridine synthase family protein, putative isoform 1 [Theobroma
            cacao] gi|508719216|gb|EOY11113.1| Pseudouridine synthase
            family protein, putative isoform 1 [Theobroma cacao]
          Length = 763

 Score =  790 bits (2039), Expect = 0.0
 Identities = 422/735 (57%), Positives = 519/735 (70%), Gaps = 44/735 (5%)
 Frame = -2

Query: 2438 QSPLLL*NPCLASMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLT 2259
            ++P++  +  L  MT++ ESDVGILC+IS LPGFRGILKQRYSDFIVNEV  +GNVVHLT
Sbjct: 30   KTPVIKSSNSLTLMTTITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLT 89

Query: 2258 TLDCPSEIXXXXXXXXXXXXD-------------RDFSQEIESFRVLAGDADVEKLKKLI 2118
            +LD P E+                          + ++ EI  FR LAGD D ++L+  I
Sbjct: 90   SLDAPPEVMIDVFSLNKFTQAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFI 149

Query: 2117 DQVVSGVHNNGESVVLSPSSDKSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXX 1938
            +Q+ SG   +   +VLSP SDKSHRTA+HNFFKE ++FLVTDT+DGPDSSSKCIRVRL  
Sbjct: 150  NQITSGSEEDICPIVLSPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNS 209

Query: 1937 XXXXXXXXXXXXXXXXXXKPYDSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXX 1758
                               PYDSRGS +WPE++GKFLRFHLYKENKDTQE          
Sbjct: 210  GNNNKGRNSKKRKERGDK-PYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLG 268

Query: 1757 XKPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQ 1578
             +PRSFGFAGTKDKRSVSTQRVTVFKQ ASRLAALN++LIGIKVG+FC+V +  +LGQL 
Sbjct: 269  IQPRSFGFAGTKDKRSVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLL 328

Query: 1577 GNRFTITLRSIIAENEDIIKAAATALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQ 1398
            GNRFTI LR I+A++E+ IKA+  +LG++GFINYFGLQRFGS SIPTH IGA LLRGEWQ
Sbjct: 329  GNRFTIILRGIVADSEETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQ 388

Query: 1397 AAVNMVLEPREGEKDA------------------TRKIREYYKESGDIEGTIRQLPRHLV 1272
            AA + +L+PREG+  +                  T++ REYYKE+GDIEGT+RQLPRHLV
Sbjct: 389  AAASTILDPREGDILSLTFFFPFLLGKALFRCLTTQRAREYYKETGDIEGTLRQLPRHLV 448

Query: 1271 AERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASMRVQNYGFHQVVLGD 1092
            AERA+LQC ++CPGNYLQAL AIPRTLRMMYVHSYQSYLWNHAASMRV+ YG ++VVLGD
Sbjct: 449  AERAMLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGSNEVVLGD 508

Query: 1091 LVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTDLSEVQNASVKVISKEDIAA 912
            LVYC    +EK  +    E              L+++  TDL E +N  VK I+  DI+ 
Sbjct: 509  LVYCKGNDAEKVKVVP-SEHEDNNFEDAYDCSQLDEISGTDLPEGKNNLVKAITAADIST 567

Query: 911  GKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTESVHNSKEFSLTNMTGAYRR 732
            G YTIED++LP+PGSR+ YP N+I  +YHD+AKKDGISLTESVHN KEFS+T+MTG+YRR
Sbjct: 568  GNYTIEDVVLPMPGSRIIYPVNDIANVYHDMAKKDGISLTESVHNIKEFSITSMTGSYRR 627

Query: 731  VFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLV-----SDSNEKKNLDSCI--L 573
            VFQKP DFEWELL YTD ++ L+ETDLD IAK++   LV     +D  E ++    +  +
Sbjct: 628  VFQKPIDFEWELLSYTDGSIALSETDLDKIAKTKPVNLVKEEKPTDGTEGQDSSDHMEHI 687

Query: 572  EAGRDNETEASLCVKDDIQTE------ESLGANETEESQIALKLCFTLPSSCYATMAIRE 411
            E+  D++  ++  V+ +   E       SL  + +  +Q ALKL FTLP+SCYATMAIRE
Sbjct: 688  ESFEDDKKFSTGNVEVEGSREAEPPQIHSLPESNSLGTQKALKLAFTLPASCYATMAIRE 747

Query: 410  LLKTSTSVAFHKALN 366
            LLKTSTSVAFHK LN
Sbjct: 748  LLKTSTSVAFHKTLN 762


>ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 701

 Score =  786 bits (2031), Expect = 0.0
 Identities = 406/687 (59%), Positives = 504/687 (73%), Gaps = 18/687 (2%)
 Frame = -2

Query: 2393 SVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXXXXX 2214
            + +ES+VGI CYIS LPGFRGILKQRYSDF+VNEV ++GNVVHLT L+ P E+       
Sbjct: 2    TTQESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAK 61

Query: 2213 XXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKSHRTAI 2034
                  +D+S EIE FR LA   DVE+L+  I +V SG  +    +VLSP  DK HRTA+
Sbjct: 62   TEDAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAV 121

Query: 2033 HNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDSRGSDN 1854
            HNFFKE +KFLVTD +DGPD+SSKCIRVRL                    KP+DSRG D+
Sbjct: 122  HNFFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDD 181

Query: 1853 WPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVTVFKQR 1674
            W E++GKFLRFHL+KENKDTQE           +PR+FGFAGTKDKR+V+ QRVTVFKQ 
Sbjct: 182  WSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQF 241

Query: 1673 ASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAATALGK 1494
            ASRLAALN +LIGIKVG+FC+V EGL LGQL GNRFTITLR ++A++EDII+A+A ALGK
Sbjct: 242  ASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGK 301

Query: 1493 NGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREYYKESG 1314
             GF+NYFGLQRFGS SIPTHLIGA+LLRGEW++ V+M+LEPREGE+D   + R+YYKES 
Sbjct: 302  QGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESN 361

Query: 1313 DIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWNHAASM 1134
            DI+GT+R+LPR+LVAERA+LQC ++CPGNY QAL A+PRTLRMMYVHSYQSYLWNHAASM
Sbjct: 362  DIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASM 421

Query: 1133 RVQNYGFHQVVLGDLVYCNKEGSEKEMITSVL--EC-----GXXXXXXXXXXXDLEDVPV 975
            RVQ YG  +VV+GDLVYC  +G E E +T ++  EC                  L+D+  
Sbjct: 422  RVQKYGTDRVVVGDLVYC--KGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISE 479

Query: 974  TDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISL 795
            T++ E + + VK ++ EDI  G YTI+DI+LPLPGSRV +P N+I  ++HDLAKKDGISL
Sbjct: 480  TNVPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGISL 539

Query: 794  TESVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLV 615
            TESVHN KEFS+TN+TG+YRRVFQKP DFEW++LKY D N+PL ETD + IAK++   + 
Sbjct: 540  TESVHNVKEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVNVN 599

Query: 614  SDSNEKKNLDSCILEAGRDNE---TEASLCVKD-DIQTE-------ESLGANETEESQIA 468
             +     + D  + +  + +E    +  L  KD ++++E       ESLG    + +QIA
Sbjct: 600  KEYPTGVSGDGSLHDRIKQSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQIA 659

Query: 467  LKLCFTLPSSCYATMAIRELLKTSTSV 387
            LKL FTLP+SCYATMAIRELLKTSTSV
Sbjct: 660  LKLSFTLPASCYATMAIRELLKTSTSV 686


>ref|XP_006577278.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Glycine max]
          Length = 690

 Score =  765 bits (1976), Expect = 0.0
 Identities = 400/691 (57%), Positives = 499/691 (72%), Gaps = 12/691 (1%)
 Frame = -2

Query: 2402 SMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSEIXXXX 2223
            +M + EE +VGI C+IS LPGFRGILKQRYSDFIVNEV  DG VV L++LD P E     
Sbjct: 2    AMKTAEEHEVGISCFISDLPGFRGILKQRYSDFIVNEVDRDGTVVQLSSLDAPQEEPESS 61

Query: 2222 XXXXXXXXDR--DFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKS 2049
                    D    ++ +IESF+ LAGD+D   L++ I+++ +G  +    +VLSP SDKS
Sbjct: 62   QENGTNTSDNVVSYASQIESFKSLAGDSDAVLLEEFINKINAGGEDGVSPIVLSPDSDKS 121

Query: 2048 HRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDS 1869
            HR A+HNFFKE  KFLVTD +DGPD+SSKCIRVRL                    KP+DS
Sbjct: 122  HRKAMHNFFKENFKFLVTDVVDGPDASSKCIRVRLNSAEPNNKGKNSKKRKERGDKPFDS 181

Query: 1868 RGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVT 1689
            RGS+NWP+N+GKFLRFHLYKENKDT E           +P+SFGFAGTKDKR+V+TQRVT
Sbjct: 182  RGSENWPKNVGKFLRFHLYKENKDTHEALGVIGNMLSVQPKSFGFAGTKDKRAVTTQRVT 241

Query: 1688 VFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAA 1509
            V+KQRASRLA+LN++L GIK+G+FC+V EGL LGQL GNRFTITLR I+A++EDIIKA+A
Sbjct: 242  VYKQRASRLASLNKRLFGIKLGDFCYVKEGLCLGQLLGNRFTITLRGIVADSEDIIKASA 301

Query: 1508 TALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREY 1329
             ALG++GFINYFGLQRFGS S+PTHLIGAALL+GEW+ AV+M+L+PR+GEK A  K R+Y
Sbjct: 302  DALGRHGFINYFGLQRFGSGSLPTHLIGAALLQGEWKLAVDMILDPRDGEKSAIAKARKY 361

Query: 1328 YKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWN 1149
            YKES D+ GT++QLPR+LVAERA+LQ  +  PGNYLQAL +IPRTLRM+YVHSYQSYLWN
Sbjct: 362  YKESSDVVGTLKQLPRYLVAERAVLQTLKTSPGNYLQALKSIPRTLRMLYVHSYQSYLWN 421

Query: 1148 HAASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTD 969
            HAAS RVQ YG   VVLGDLVYC +  + K  +T  +              + ED    +
Sbjct: 422  HAASKRVQKYGTENVVLGDLVYCKENSTGK--VTESVGSEYAEDCSGRYDSNNEDEISGE 479

Query: 968  LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTE 789
            + E +  SVKV+  ED+ +G YTI+D+ILP+PGSR+ YP+N I  +Y DLAKKDGISLTE
Sbjct: 480  IHE-EIDSVKVVDVEDLNSGYYTIDDVILPMPGSRIKYPTNHIANVYEDLAKKDGISLTE 538

Query: 788  SVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVSD 609
            SVHN ++FS+T++TG YRRVFQKP +FEWELL Y+D N  L ETDLD + KS+    V  
Sbjct: 539  SVHNVEDFSITSITGCYRRVFQKPINFEWELLTYSDSNKQLVETDLDKVNKSKPMGTVKQ 598

Query: 608  ----SNEKKNLDSCILEAGRDNET----EASLCVKDDIQT--EESLGANETEESQIALKL 459
                + + +    CI E    N+       S    ++I+   +ESL  + +++SQIALKL
Sbjct: 599  MGAANGKNEEAFDCIRELESSNDVVKVENYSEIAGEEIKLPHDESLSGSSSQDSQIALKL 658

Query: 458  CFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
             FTLP+SCYATMAIRELLKTSTSVA+HK LN
Sbjct: 659  SFTLPASCYATMAIRELLKTSTSVAYHKTLN 689


>ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
            gi|297330312|gb|EFH60731.1| pseudouridylate synthase
            [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  764 bits (1973), Expect = 0.0
 Identities = 404/682 (59%), Positives = 492/682 (72%), Gaps = 4/682 (0%)
 Frame = -2

Query: 2399 MTSVEESDVGILCYISKLPGFRGILKQR-YSDFIVNEVGLDGNVVHLTTLDCPSE--IXX 2229
            MT+V+E+DVGI C+IS+LPGFRGILKQR Y+DFIVNEV +DGNVVHLT+LD P E  +  
Sbjct: 37   MTTVDEADVGISCFISQLPGFRGILKQRSYADFIVNEVDIDGNVVHLTSLDLPPEMDVKE 96

Query: 2228 XXXXXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSDKS 2049
                       ++++  IESFR ++   D E+L+ LI+QV SG  +    VVL PSSDKS
Sbjct: 97   EDKTKTSDNVPQNYTSAIESFRSISSVTDAERLETLINQVTSGTDDEISPVVLDPSSDKS 156

Query: 2048 HRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPYDS 1869
             RTAIHNF KE  KFLVTDT+DGPDS+SKCIRVR+                    KP+DS
Sbjct: 157  KRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPFDS 216

Query: 1868 RGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQRVT 1689
            RGS++WPE++GKFLRFHLYKENKDTQE           +P+SFGF+GTKDKRSVSTQRVT
Sbjct: 217  RGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVT 276

Query: 1688 VFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKAAA 1509
            VFKQ+AS+LAALN++L GIKVG+FCHV EGL+LGQL GNRFTITLR ++A++E+ IK +A
Sbjct: 277  VFKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSA 336

Query: 1508 TALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIREY 1329
             +LGK+GFINYFGLQRFGS S+PTH +GAALL+GEW+ A                  REY
Sbjct: 337  ESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ECSNAWHVVNDAREY 390

Query: 1328 YKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYLWN 1149
            YKE+GDI+GT+RQLPR+LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYLWN
Sbjct: 391  YKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWN 450

Query: 1148 HAASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITSVLECGXXXXXXXXXXXDLEDVPVTD 969
            +AAS+RV  YG  QVVLGDLV   K  +EK M+ S+                ++D  V D
Sbjct: 451  NAASLRVTKYGTSQVVLGDLV-STKVDAEKRMVDSLTSEHNESSEEALDCDQVDDTAVVD 509

Query: 968  LSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDLAKKDGISLTE 789
            L   ++  VKV+S ED+ AG Y   DI+LPLPGSRV YPSN+I +IYHDLAKKDGISLTE
Sbjct: 510  LPAERSDLVKVVSIEDLEAGTYLTSDIVLPLPGSRVIYPSNDIAEIYHDLAKKDGISLTE 569

Query: 788  SVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIAKSRASTLVSD 609
            S+H  KEFS+T+MTG YRRVFQKP DFEWELL YTD N PLAETDLD I   +    V  
Sbjct: 570  SIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRITVYKPVDKVGS 629

Query: 608  SNEKKNLDSCILEAGRDNETEASLCVKDDIQTEESLGAN-ETEESQIALKLCFTLPSSCY 432
            + E ++ +    +       E +L  + D + +E    N ++E++Q+ALK+  TLPSSCY
Sbjct: 630  AEEIED-EPLKSDTNPHESCETNLKDQTDSKEDEKDTRNPDSEQTQMALKMALTLPSSCY 688

Query: 431  ATMAIRELLKTSTSVAFHKALN 366
            ATMAIRELLKTSTSVA+HK LN
Sbjct: 689  ATMAIRELLKTSTSVAYHKTLN 710


>ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Capsella rubella]
            gi|482568803|gb|EOA32992.1| hypothetical protein
            CARUB_v10016322mg [Capsella rubella]
          Length = 704

 Score =  761 bits (1964), Expect = 0.0
 Identities = 403/693 (58%), Positives = 496/693 (71%), Gaps = 12/693 (1%)
 Frame = -2

Query: 2408 LASMTSVEESDVGILCYISKLPGFRGILKQRYSDFIVNEVGLDGNVVHLTTLDCPSE--I 2235
            +  M +V+E+DVGI C+IS+LPGFRGILKQRY+DFIVNEV ++GNVVHLT+LD P E  +
Sbjct: 36   IEGMKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDINGNVVHLTSLDLPPEMDV 95

Query: 2234 XXXXXXXXXXXXDRDFSQEIESFRVLAGDADVEKLKKLIDQVVSGVHNNGESVVLSPSSD 2055
                         ++++  IESF+ ++   D E+L+ LI+QV SG  +    VVL PSSD
Sbjct: 96   KEEDKTKSSDNVPQNYTSAIESFKSISNATDAERLETLINQVTSGTDDEISPVVLDPSSD 155

Query: 2054 KSHRTAIHNFFKERMKFLVTDTLDGPDSSSKCIRVRLXXXXXXXXXXXXXXXXXXXXKPY 1875
            KS RTAIHNF KE  KFLVTDT+DGPDS+SKCIRVR+                    KP+
Sbjct: 156  KSKRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPF 215

Query: 1874 DSRGSDNWPENIGKFLRFHLYKENKDTQEXXXXXXXXXXXKPRSFGFAGTKDKRSVSTQR 1695
            DSRGS++WPE++GKFLRFHLYKENKDTQE           +P+SFGF+GTKDKRSVSTQ 
Sbjct: 216  DSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQC 275

Query: 1694 VTVFKQRASRLAALNQKLIGIKVGNFCHVNEGLVLGQLQGNRFTITLRSIIAENEDIIKA 1515
            VTVFKQ+AS+LAALN++L GIKVG+FCHV EGL+LGQL GNRFTITLR ++A++E+ IK 
Sbjct: 276  VTVFKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKK 335

Query: 1514 AATALGKNGFINYFGLQRFGSSSIPTHLIGAALLRGEWQAAVNMVLEPREGEKDATRKIR 1335
            +A +LGK+GFINYFGLQRFGS S+PTH +GAALL+GEW+ A       R          R
Sbjct: 336  SAESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ERINAWHVVNDAR 389

Query: 1334 EYYKESGDIEGTIRQLPRHLVAERAILQCFRQCPGNYLQALLAIPRTLRMMYVHSYQSYL 1155
            EYYKE+GDI+GT+RQLPR+LVAERAILQC ++CPGNYLQAL  IPRTLRMMYVHSYQSYL
Sbjct: 390  EYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYL 449

Query: 1154 WNHAASMRVQNYGFHQVVLGDLVYCNKEGSEKEMITS--------VLECGXXXXXXXXXX 999
            WN+AAS+RV+ YG  QVVLGDLV    + ++K   TS         L+C           
Sbjct: 450  WNNAASLRVKKYGTSQVVLGDLVSTKIDATKKMADTSEHKENNEDALDC----------- 498

Query: 998  XDLEDVPVTDLSEVQNASVKVISKEDIAAGKYTIEDIILPLPGSRVSYPSNEIGKIYHDL 819
              ++D  + DL   ++  VKV+S ED+ AG Y+  DI+LPLPGSRV YPSN+I +IYHDL
Sbjct: 499  DQVDDTAIVDLPAERSDLVKVVSVEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDL 558

Query: 818  AKKDGISLTESVHNSKEFSLTNMTGAYRRVFQKPKDFEWELLKYTDVNLPLAETDLDIIA 639
            AKKDGISLT+S+H  KEFS+T+MTG YRRVFQKP DFEWELL YTD N PLAETDLD I 
Sbjct: 559  AKKDGISLTDSIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRIT 618

Query: 638  KS--RASTLVSDSNEKKNLDSCILEAGRDNETEASLCVKDDIQTEESLGANETEESQIAL 465
             +  +  +     +E  N  S   E   +++TE     KDD   E+  G   +E++Q+AL
Sbjct: 619  MTVDKVGSAEEVEDESMNPISNPPETDLNDQTER----KDD---EKDTGNPNSEQTQMAL 671

Query: 464  KLCFTLPSSCYATMAIRELLKTSTSVAFHKALN 366
            K+  TLPSSCYATMAIRELLKTSTSVA+HK LN
Sbjct: 672  KMALTLPSSCYATMAIRELLKTSTSVAYHKTLN 704