BLASTX nr result
ID: Mentha27_contig00021751
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha27_contig00021751
(378 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh... 153 1e-49
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus... 152 3e-49
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise... 145 2e-47
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub... 135 1e-43
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 134 2e-43
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a... 135 3e-43
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob... 134 3e-43
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a... 134 6e-43
ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phas... 134 1e-42
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 131 1e-42
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me... 133 2e-42
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub... 133 2e-42
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub... 131 4e-42
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [... 129 8e-42
ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theob... 128 2e-41
gb|ABG29322.1| DNA-directed RNA polymerase II 135 kDa polypeptid... 128 2e-41
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n... 127 4e-41
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p... 127 5e-41
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ... 127 5e-41
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays] 127 5e-41
>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
Length = 821
Score = 153 bits (387), Expect(2) = 1e-49
Identities = 74/95 (77%), Positives = 77/95 (81%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF K+GIVPDIVINPHAFPSRQTPGQ KYATPFSTPSV+D
Sbjct: 589 SQENFPFTKEGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGALKYATPFSTPSVDD 648
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
ITAQLHRLG+SRWG ERVYDGRTGEKVESLIFMGP
Sbjct: 649 ITAQLHRLGFSRWGDERVYDGRTGEKVESLIFMGP 683
Score = 68.9 bits (167), Expect(2) = 1e-49
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRLTHMAEDK+KFRNTGPVHPLTRQPV
Sbjct: 682 GPTFYQRLTHMAEDKIKFRNTGPVHPLTRQPV 713
>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
Length = 1211
Score = 152 bits (383), Expect(2) = 3e-49
Identities = 73/95 (76%), Positives = 77/95 (81%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF++ GIVPDIVINPHAFPSRQTPGQ KYATPFS+PSVED
Sbjct: 977 SQENFPFSQQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGLKYATPFSSPSVED 1036
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
ITAQLHRLG+SRWGGERVYDGRTGEKV SLIFMGP
Sbjct: 1037 ITAQLHRLGFSRWGGERVYDGRTGEKVNSLIFMGP 1071
Score = 69.3 bits (168), Expect(2) = 3e-49
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRLTHMAEDKVKFRNTGPVHPLTRQPV
Sbjct: 1070 GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 1101
>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
Length = 1205
Score = 145 bits (366), Expect(2) = 2e-47
Identities = 69/95 (72%), Positives = 75/95 (78%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF + GIVPDIVINPHAFPSRQTPGQ KYATPFS+PSVED
Sbjct: 973 SQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGLKYATPFSSPSVED 1032
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
ITAQLHRLG+SRWG E+VYDGRTGE ++SLIFMGP
Sbjct: 1033 ITAQLHRLGFSRWGAEKVYDGRTGEALKSLIFMGP 1067
Score = 69.3 bits (168), Expect(2) = 2e-47
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRLTHMAEDKVKFRNTGPVHPLTRQPV
Sbjct: 1066 GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 1097
>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1197
Score = 135 bits (340), Expect(2) = 1e-43
Identities = 66/95 (69%), Positives = 70/95 (73%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF GIVPDIVINPHAFPSRQTPGQ KYATPFSTPSV+
Sbjct: 965 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDA 1024
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
IT QLHR G+SRWG ERVY+GRTGE + SLIFMGP
Sbjct: 1025 ITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGP 1059
Score = 67.0 bits (162), Expect(2) = 1e-43
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HMAEDKVKFRNTGPVHPLTRQPV
Sbjct: 1058 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV 1089
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 134 bits (338), Expect(2) = 2e-43
Identities = 66/95 (69%), Positives = 70/95 (73%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF + GIVPDIVINPH+FPSRQTPGQ KYATPFST SVE
Sbjct: 971 SQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEA 1030
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1031 ITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1065
Score = 67.0 bits (162), Expect(2) = 2e-43
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HMAEDKVKFRNTGPVHPLTRQPV
Sbjct: 1064 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV 1095
>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Glycine max]
Length = 1205
Score = 135 bits (341), Expect(2) = 3e-43
Identities = 66/95 (69%), Positives = 70/95 (73%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF + GIVPDIVINPHAFPSRQTPGQ K ATPFSTPSV+
Sbjct: 973 SQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDA 1032
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1033 ITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1067
Score = 65.5 bits (158), Expect(2) = 3e-43
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1066 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPV 1097
>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao]
Length = 1184
Score = 134 bits (336), Expect(2) = 3e-43
Identities = 66/95 (69%), Positives = 69/95 (72%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF GIVPDIVINPHAFPSRQTPGQ KYATPFST SV+
Sbjct: 952 SQENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTISVDA 1011
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1012 ITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1046
Score = 67.0 bits (162), Expect(2) = 3e-43
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HMAEDKVKFRNTGPVHPLTRQPV
Sbjct: 1045 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV 1076
>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Glycine max]
Length = 1205
Score = 134 bits (338), Expect(2) = 6e-43
Identities = 65/95 (68%), Positives = 70/95 (73%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF + GIVPDIVINPHAFPSRQTPGQ + ATPFSTPSV+
Sbjct: 973 SQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILRQATPFSTPSVDA 1032
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1033 ITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1067
Score = 65.5 bits (158), Expect(2) = 6e-43
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1066 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPV 1097
>ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phaseolus vulgaris]
gi|561010029|gb|ESW08936.1| hypothetical protein
PHAVU_009G087100g [Phaseolus vulgaris]
Length = 1202
Score = 134 bits (336), Expect(2) = 1e-42
Identities = 64/94 (68%), Positives = 70/94 (74%)
Frame = +3
Query: 6 QENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDI 185
QENFPF + GIVPDIVINPHAFPSRQTPGQ ++ATPFSTPSV+ I
Sbjct: 971 QENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRHATPFSTPSVDAI 1030
Query: 186 TAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
T QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1031 TDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1064
Score = 65.5 bits (158), Expect(2) = 1e-42
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1063 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPV 1094
>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
Length = 1019
Score = 131 bits (329), Expect(2) = 1e-42
Identities = 62/95 (65%), Positives = 69/95 (72%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF GIVPDIV+NPHAFPSRQTPGQ KYATPFST SV+
Sbjct: 787 SQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATPFSTLSVDA 846
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
+T QLHR G+SRWG ERVY+GRTGE + SL+FMGP
Sbjct: 847 VTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGP 881
Score = 68.2 bits (165), Expect(2) = 1e-42
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRLTHM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 880 GPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPV 911
>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1237
Score = 133 bits (334), Expect(2) = 2e-42
Identities = 66/95 (69%), Positives = 69/95 (72%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF K GIVPDIVINPHAFPSRQTPGQ + ATPFST SVE
Sbjct: 1005 SQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEA 1064
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1065 ITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1099
Score = 65.5 bits (158), Expect(2) = 2e-42
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1098 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPV 1129
>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
arietinum]
Length = 1199
Score = 133 bits (334), Expect(2) = 2e-42
Identities = 66/95 (69%), Positives = 69/95 (72%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF K GIVPDIVINPHAFPSRQTPGQ + ATPFST SVE
Sbjct: 967 SQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEA 1026
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
IT QLHR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1027 ITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1061
Score = 65.5 bits (158), Expect(2) = 2e-42
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1060 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPV 1091
>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
vesca subsp. vesca]
Length = 1201
Score = 131 bits (330), Expect(2) = 4e-42
Identities = 64/94 (68%), Positives = 68/94 (72%)
Frame = +3
Query: 6 QENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVEDI 185
QENFPF GIVPDIVINPHAFPSRQTPGQ +YATPFST SV+DI
Sbjct: 970 QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDI 1029
Query: 186 TAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
T QLHR G+SRWG ERVY+GRTGE V LIFMGP
Sbjct: 1030 TDQLHRAGFSRWGNERVYNGRTGEMVRQLIFMGP 1063
Score = 65.9 bits (159), Expect(2) = 4e-42
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1062 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1093
>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1181
Score = 129 bits (323), Expect(2) = 8e-42
Identities = 63/95 (66%), Positives = 68/95 (71%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF G+VPDIVINPHAFPSRQTPGQ +YATPFST SV+D
Sbjct: 949 SQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDD 1008
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
I QLHR +SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1009 IIDQLHRAKFSRWGNERVYNGRTGEMVRSLIFMGP 1043
Score = 67.4 bits (163), Expect(2) = 8e-42
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HMAEDKVKFRNTGPVHPLTRQPV
Sbjct: 1042 GPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPV 1073
>ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
gi|508782081|gb|EOY29337.1| DNA-directed RNA polymerase
isoform 2 [Theobroma cacao]
Length = 961
Score = 128 bits (321), Expect(2) = 2e-41
Identities = 66/99 (66%), Positives = 69/99 (69%), Gaps = 4/99 (4%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF GIVPDIVINPHAFPSRQTPGQ KYATPFST SV+
Sbjct: 725 SQENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTISVDA 784
Query: 183 ITAQL----HRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
IT QL HR G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 785 ITEQLHSICHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 823
Score = 67.0 bits (162), Expect(2) = 2e-41
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HMAEDKVKFRNTGPVHPLTRQPV
Sbjct: 822 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV 853
>gb|ABG29322.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Solanum bulbocastanum]
Length = 304
Score = 128 bits (321), Expect(2) = 2e-41
Identities = 64/95 (67%), Positives = 67/95 (70%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF GIVPDIVINPHAFPSRQTPGQ KYATPFST SV+
Sbjct: 73 SQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEASLGKGIALGGGEKYATPFSTLSVDA 132
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
I QLH G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 133 ILKQLHGRGFSRWGNERVYNGRTGEMVHSLIFMGP 167
Score = 67.0 bits (162), Expect(2) = 2e-41
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HMAEDKVKFRNTGPVHPLTRQPV
Sbjct: 166 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV 197
>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
Length = 1196
Score = 127 bits (320), Expect(2) = 4e-41
Identities = 64/97 (65%), Positives = 70/97 (72%), Gaps = 2/97 (2%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXX--KYATPFSTPSV 176
SQENFPF GIVPDIVINPHAFPSRQTPGQ ++ATPFSTPSV
Sbjct: 962 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALAKGIPLRHATPFSTPSV 1021
Query: 177 EDITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
+ IT QLH+ G+SRWG ERVY+GRTGE V SLIFMGP
Sbjct: 1022 DAITEQLHKAGFSRWGNERVYNGRTGEMVRSLIFMGP 1058
Score = 66.2 bits (160), Expect(2) = 4e-41
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1057 GPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPV 1088
>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
largest subunit 2-2 [Zea mays]
Length = 1229
Score = 127 bits (320), Expect(2) = 5e-41
Identities = 60/95 (63%), Positives = 69/95 (72%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF +GIVPDIVINPHAFP+RQTPGQ +YATPF+T SV+
Sbjct: 997 SQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDV 1056
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
I QLHR GYSRWG E V +GRTGE+V+SL+FMGP
Sbjct: 1057 IAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGP 1091
Score = 65.9 bits (159), Expect(2) = 5e-41
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1090 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1121
>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
gi|283443696|gb|ADB19857.1| required to maintain
repression 7/RNA polymerase D second largest subunit [Zea
mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
RNA polymerase subunit family protein [Zea mays]
Length = 1229
Score = 127 bits (320), Expect(2) = 5e-41
Identities = 60/95 (63%), Positives = 69/95 (72%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF +GIVPDIVINPHAFP+RQTPGQ +YATPF+T SV+
Sbjct: 997 SQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDV 1056
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
I QLHR GYSRWG E V +GRTGE+V+SL+FMGP
Sbjct: 1057 IAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGP 1091
Score = 65.9 bits (159), Expect(2) = 5e-41
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1090 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1121
>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
Length = 1170
Score = 127 bits (320), Expect(2) = 5e-41
Identities = 60/95 (63%), Positives = 69/95 (72%)
Frame = +3
Query: 3 SQENFPFNKDGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXXKYATPFSTPSVED 182
SQENFPF +GIVPDIVINPHAFP+RQTPGQ +YATPF+T SV+
Sbjct: 938 SQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDV 997
Query: 183 ITAQLHRLGYSRWGGERVYDGRTGEKVESLIFMGP 287
I QLHR GYSRWG E V +GRTGE+V+SL+FMGP
Sbjct: 998 IAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGP 1032
Score = 65.9 bits (159), Expect(2) = 5e-41
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 281 GATFYQRLTHMAEDKVKFRNTGPVHPLTRQPV 376
G TFYQRL HM+EDKVKFRNTGPVHPLTRQPV
Sbjct: 1031 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1062