BLASTX nr result
ID: Mentha27_contig00020716
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha27_contig00020716
(474 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD43106.1| reverse transcriptase [Orobanche crenata] 59 3e-14
gb|ABD43116.1| reverse transcriptase [Orobanche bungeana] 57 5e-13
gb|ABD43136.1| reverse transcriptase [Orobanche ramosa] 54 6e-13
gb|ABD43167.1| reverse transcriptase [Orobanche tunetana] 54 1e-12
gb|ABD43145.1| reverse transcriptase [Orobanche tunetana] 54 1e-12
ref|XP_007037156.1| DNA/RNA polymerases superfamily protein [The... 58 1e-12
gb|ABD43150.1| reverse transcriptase [Orobanche tunetana] 54 1e-12
ref|XP_007049949.1| DNA/RNA polymerases superfamily protein [The... 56 2e-12
ref|XP_007049837.1| DNA/RNA polymerases superfamily protein [The... 56 2e-12
ref|XP_007044234.1| Retrotransposon protein [Theobroma cacao] gi... 56 2e-12
gb|ABD43031.1| reverse transcriptase [Orobanche cernua var. cumana] 54 2e-12
ref|XP_007014218.1| DNA/RNA polymerases superfamily protein [The... 55 3e-12
ref|XP_007022687.1| Retrotransposon protein, Ty3-gypsy sub-class... 56 3e-12
gb|ABD43080.1| reverse transcriptase [Orobanche owerinii] 53 3e-12
gb|ABD43141.1| reverse transcriptase [Orobanche ramosa] 54 4e-12
gb|ABM55240.1| retrotransposon protein [Beta vulgaris] 50 8e-12
ref|XP_007049933.1| Retrotransposon protein [Theobroma cacao] gi... 54 8e-12
gb|AFR43614.1| reverse transcriptase, partial [Ziziphus jujuba] 57 9e-12
ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [The... 54 1e-11
gb|AFR43612.1| reverse transcriptase, partial [Ziziphus jujuba] 55 1e-11
>gb|ABD43106.1| reverse transcriptase [Orobanche crenata]
Length = 143
Score = 58.5 bits (140), Expect(2) = 3e-14
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
V M F L NAPTVF+DLMN +FHPYLDKFVIVF+
Sbjct: 70 VVMPFGLSNAPTVFMDLMNRVFHPYLDKFVIVFI 103
Score = 45.1 bits (105), Expect(2) = 3e-14
Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 11/42 (26%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRL 194
F+DDIL+YSK LETL +EKLYAKFKKC+F L
Sbjct: 102 FIDDILVYSKDKEQHQEHLRITLETLRKEKLYAKFKKCEFWL 143
>gb|ABD43116.1| reverse transcriptase [Orobanche bungeana]
Length = 143
Score = 57.4 bits (137), Expect(2) = 5e-13
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
V MSF L NAPTVF+DLMN +F PYLDKFVIVF+
Sbjct: 70 VVMSFGLSNAPTVFMDLMNRVFQPYLDKFVIVFI 103
Score = 42.4 bits (98), Expect(2) = 5e-13
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 11/42 (26%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRL 194
F+DDIL+YSK LETL +EKLYAK KKC+F L
Sbjct: 102 FIDDILVYSKDKEQHQEHLRITLETLRKEKLYAKVKKCEFWL 143
>gb|ABD43136.1| reverse transcriptase [Orobanche ramosa]
Length = 143
Score = 53.9 bits (128), Expect(2) = 6e-13
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ M F L NAPTVF+DLMN +F PYLDKF+IVF+
Sbjct: 70 IVMPFGLSNAPTVFMDLMNRVFQPYLDKFMIVFI 103
Score = 45.4 bits (106), Expect(2) = 6e-13
Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 11/42 (26%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRL 194
F+DDIL+YSK LETL +EKLYAKFKKC+F L
Sbjct: 102 FIDDILVYSKDKEQHQEHLRVALETLRKEKLYAKFKKCEFGL 143
>gb|ABD43167.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 53.5 bits (127), Expect(2) = 1e-12
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
V M F L NAP VF+DLMN +F PYLDKFVIVF+
Sbjct: 70 VVMPFGLSNAPAVFMDLMNRVFQPYLDKFVIVFI 103
Score = 45.1 bits (105), Expect(2) = 1e-12
Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 11/42 (26%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRL 194
F+DDIL+YSK LETL +EKLYAKFKKC+F L
Sbjct: 102 FIDDILVYSKDEEQHREHLRIALETLRKEKLYAKFKKCEFWL 143
>gb|ABD43145.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 53.5 bits (127), Expect(2) = 1e-12
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = +1
Query: 1 RIVTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ V + F L NAPTVF+DLMN +F PYLDKF+IVF+
Sbjct: 68 KFVVIHFGLSNAPTVFMDLMNRVFQPYLDKFLIVFI 103
Score = 45.1 bits (105), Expect(2) = 1e-12
Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 11/42 (26%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRL 194
F+DDIL+YSK LETL +EKLYAKFKKC+F L
Sbjct: 102 FIDDILVYSKDKEQHQEHLRVALETLHKEKLYAKFKKCEFWL 143
>ref|XP_007037156.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508774401|gb|EOY21657.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1188
Score = 57.8 bits (138), Expect(2) = 1e-12
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ M F L NAPTVF+DLMN +FHPYLDKFVIVF+
Sbjct: 688 LVMPFGLTNAPTVFMDLMNRVFHPYLDKFVIVFI 721
Score = 40.4 bits (93), Expect(2) = 1e-12
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 11/47 (23%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRLNRNVF 209
F+DDIL+YSK VL+TL +LY KF KC+F L VF
Sbjct: 720 FIDDILVYSKNDDEHAAHLRIVLQTLRERQLYVKFSKCEFWLKEVVF 766
>gb|ABD43150.1| reverse transcriptase [Orobanche tunetana]
Length = 143
Score = 53.5 bits (127), Expect(2) = 1e-12
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
V M F L NAP VF+DLMN +F PYLDKFVIVF+
Sbjct: 70 VVMPFGLSNAPAVFMDLMNRVFQPYLDKFVIVFI 103
Score = 44.7 bits (104), Expect(2) = 1e-12
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 11/40 (27%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKF 188
F+DDIL+YSK LETL +EKLYAKFKKC+F
Sbjct: 102 FIDDILVYSKDKEQHQEHLRIALETLRKEKLYAKFKKCEF 141
>ref|XP_007049949.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508702210|gb|EOX94106.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1119
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ M F L NAP VF+DLMN +FHPYLDKFVIVF+
Sbjct: 684 LVMPFGLTNAPAVFMDLMNRVFHPYLDKFVIVFI 717
Score = 42.0 bits (97), Expect(2) = 2e-12
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 11/47 (23%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRLNRNVF 209
F+DDIL+YSK VL+TL +LYAKF KC+F L VF
Sbjct: 716 FIDDILVYSKNDDEHAAHLRIVLQTLRERQLYAKFSKCEFWLKEVVF 762
>ref|XP_007049837.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508702098|gb|EOX93994.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 811
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ M F L NAP VF+DLMN +FHPYLDKFVIVF+
Sbjct: 218 LVMPFGLTNAPAVFMDLMNRVFHPYLDKFVIVFI 251
Score = 42.0 bits (97), Expect(2) = 2e-12
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 11/47 (23%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRLNRNVF 209
F+DDIL+YSK VL+TL +LYAKF KC+F L VF
Sbjct: 250 FIDDILVYSKNDDEHVAHLHIVLQTLRERQLYAKFSKCEFWLKEVVF 296
>ref|XP_007044234.1| Retrotransposon protein [Theobroma cacao]
gi|508708169|gb|EOY00066.1| Retrotransposon protein
[Theobroma cacao]
Length = 381
Score = 55.8 bits (133), Expect(2) = 2e-12
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ M F L NAP VF+DLMN +FHPYLDKFVIVF+
Sbjct: 203 LVMPFGLTNAPAVFMDLMNRVFHPYLDKFVIVFI 236
Score = 42.0 bits (97), Expect(2) = 2e-12
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 11/47 (23%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRLNRNVF 209
F+DDIL+YSK VL+TL +LYAKF KC+F L VF
Sbjct: 235 FIDDILVYSKNDDEHAAHLRIVLQTLRERQLYAKFSKCEFWLKEVVF 281
>gb|ABD43031.1| reverse transcriptase [Orobanche cernua var. cumana]
Length = 143
Score = 53.5 bits (127), Expect(2) = 2e-12
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
V M F L NAP VF+DLMN +FH YLDKFVIVF+
Sbjct: 70 VVMPFGLSNAPAVFMDLMNRVFHQYLDKFVIVFI 103
Score = 43.9 bits (102), Expect(2) = 2e-12
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 11/40 (27%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKF 188
F+DDIL+YS+ VLETL EKLYAKFKKC+F
Sbjct: 102 FIDDILVYSEDEKQHEEHLRVVLETLRNEKLYAKFKKCEF 141
>ref|XP_007014218.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508784581|gb|EOY31837.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 668
Score = 55.1 bits (131), Expect(2) = 3e-12
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ M F L NAP VF DLMN +FHPYLDKFVIVF+
Sbjct: 524 LVMPFGLTNAPAVFTDLMNRVFHPYLDKFVIVFI 557
Score = 42.0 bits (97), Expect(2) = 3e-12
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 11/47 (23%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRLNRNVF 209
F+DDIL+YSK VL+TL +LYAKF KC+F L VF
Sbjct: 556 FIDDILVYSKNDDEHAAHLRIVLQTLRERQLYAKFSKCEFWLKEVVF 602
>ref|XP_007022687.1| Retrotransposon protein, Ty3-gypsy sub-class, putative [Theobroma
cacao] gi|508722315|gb|EOY14212.1| Retrotransposon
protein, Ty3-gypsy sub-class, putative [Theobroma cacao]
Length = 284
Score = 56.2 bits (134), Expect(2) = 3e-12
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ M F L NAPT F+DLMN +FHPYLDKFVIVF+
Sbjct: 59 LVMPFGLTNAPTAFMDLMNRVFHPYLDKFVIVFI 92
Score = 40.8 bits (94), Expect(2) = 3e-12
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 11/47 (23%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRLNRNVF 209
F+DDIL+YS+ VL+TL +LYAKF KC+F L VF
Sbjct: 91 FIDDILVYSRDNDEHAAHLRIVLQTLRERQLYAKFSKCEFWLQEVVF 137
>gb|ABD43080.1| reverse transcriptase [Orobanche owerinii]
Length = 143
Score = 53.1 bits (126), Expect(2) = 3e-12
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
V M F L NAP VF+DLMN +F PYLDKFVIVF+
Sbjct: 70 VVMPFCLSNAPAVFMDLMNRVFQPYLDKFVIVFI 103
Score = 43.9 bits (102), Expect(2) = 3e-12
Identities = 24/42 (57%), Positives = 27/42 (64%), Gaps = 11/42 (26%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRL 194
F+DDIL+YSK LETL +EKLYAKFKKC F L
Sbjct: 102 FIDDILVYSKDKEQHQEHLRVTLETLRKEKLYAKFKKCVFWL 143
>gb|ABD43141.1| reverse transcriptase [Orobanche ramosa]
Length = 143
Score = 53.5 bits (127), Expect(2) = 4e-12
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
V M F L NAP VF+DLMN +F PYLDKFVIVF+
Sbjct: 70 VVMPFGLSNAPAVFMDLMNRVFQPYLDKFVIVFI 103
Score = 43.1 bits (100), Expect(2) = 4e-12
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 11/42 (26%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRL 194
F++DIL+YSK LETL +EKLYAKFKKC+F L
Sbjct: 102 FINDILVYSKDEEQHREHLRITLETLRKEKLYAKFKKCEFWL 143
>gb|ABM55240.1| retrotransposon protein [Beta vulgaris]
Length = 1501
Score = 50.4 bits (119), Expect(2) = 8e-12
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +1
Query: 13 MSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
M F L NAP +F+DLMN IFH +LDKFV+VF+
Sbjct: 682 MPFGLTNAPAIFMDLMNRIFHEFLDKFVVVFI 713
Score = 45.1 bits (105), Expect(2) = 8e-12
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 11/47 (23%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRLNRNVF 209
F+DDILIYS+ +LETL + +LYAKF KC+FRL + F
Sbjct: 712 FIDDILIYSRNETEHDEHLRIILETLRKNQLYAKFSKCEFRLEKVAF 758
>ref|XP_007049933.1| Retrotransposon protein [Theobroma cacao]
gi|508702194|gb|EOX94090.1| Retrotransposon protein
[Theobroma cacao]
Length = 324
Score = 54.3 bits (129), Expect(2) = 8e-12
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ M F L NAP F+DLMN +FHPYLDKFVIVF+
Sbjct: 230 LVMPFGLTNAPAAFMDLMNRVFHPYLDKFVIVFI 263
Score = 41.2 bits (95), Expect(2) = 8e-12
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 11/47 (23%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRLNRNVF 209
F+DDILIYS+ VL+TL +LYAKF KC+F L VF
Sbjct: 262 FIDDILIYSRDNDEHAAHLRIVLQTLWERQLYAKFSKCEFWLQEVVF 308
>gb|AFR43614.1| reverse transcriptase, partial [Ziziphus jujuba]
Length = 144
Score = 56.6 bits (135), Expect(2) = 9e-12
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +1
Query: 13 MSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
MSF LINAP F+DLMN +FHPYLD+FVIVF+
Sbjct: 73 MSFGLINAPAAFMDLMNRVFHPYLDRFVIVFI 104
Score = 38.9 bits (89), Expect(2) = 9e-12
Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 11/42 (26%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRL 194
F+DDILIYSK VL+TL + +LYAKF KC F L
Sbjct: 103 FIDDILIYSKGQEEHPRHLKRVLQTLRQHQLYAKFDKCDFWL 144
>ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508708185|gb|EOY00082.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1515
Score = 54.3 bits (129), Expect(2) = 1e-11
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ M F L NAP F+DLMN +FHPYLDKFVIVF+
Sbjct: 697 LVMPFGLTNAPAAFMDLMNRVFHPYLDKFVIVFI 730
Score = 40.8 bits (94), Expect(2) = 1e-11
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 11/47 (23%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRLNRNVF 209
F+DDIL+YS+ VL+TL +LYAKF KC+F L VF
Sbjct: 729 FIDDILVYSRDNDEHAAHLRIVLQTLRERQLYAKFSKCEFWLQEVVF 775
>gb|AFR43612.1| reverse transcriptase, partial [Ziziphus jujuba]
Length = 144
Score = 55.1 bits (131), Expect(2) = 1e-11
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 7 VTMSFKLINAPTVFIDLMNHIFHPYLDKFVIVFL 108
+ MSF L NAP F+DLMN +FHPYLD+FVIVF+
Sbjct: 71 LVMSFGLTNAPAAFMDLMNRVFHPYLDRFVIVFI 104
Score = 39.7 bits (91), Expect(2) = 1e-11
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 11/42 (26%)
Frame = +3
Query: 102 FLDDILIYSK-----------VLETLIREKLYAKFKKCKFRL 194
F+DDILIYSK VL+TL + +LYAKF KC+F L
Sbjct: 103 FIDDILIYSKSQEEHVGHLKRVLQTLRQHQLYAKFDKCEFWL 144