BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00020152
         (2179 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU27933.1| hypothetical protein MIMGU_mgv1a003121mg [Mimulus...   552   0.0  
gb|EPS59875.1| hypothetical protein M569_14929 [Genlisea aurea]       512   e-179
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   495   e-171
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   493   e-170
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   464   e-164
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   461   e-162
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   463   e-162
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   460   e-162
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   459   e-161
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   449   e-161
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   450   e-157
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   445   e-157
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   433   e-153
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   418   e-153
ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein...   434   e-153
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...   432   e-151
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   431   e-151
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   431   e-151
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....   428   e-147
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   427   e-147

>gb|EYU27933.1| hypothetical protein MIMGU_mgv1a003121mg [Mimulus guttatus]
          Length = 606

 Score =  552 bits (1422), Expect(2) = 0.0
 Identities = 307/470 (65%), Positives = 344/470 (73%), Gaps = 6/470 (1%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLEKLLLEAAGRT                                     GY++RKPS
Sbjct: 1    MADLEKLLLEAAGRTTTSGRNRHSSPPSRRRRKGSYSDDGSDSKNEESDGDRGYTNRKPS 60

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEDDREKLSKLTE 1536
             SQVPLKKRLD A                              DLYKDEDDREKLSKLTE
Sbjct: 61   GSQVPLKKRLD-ATDRDEDRSSQEGDEDEYDHDRDSDNDSVGSDLYKDEDDREKLSKLTE 119

Query: 1535 LEREMILEARATKRSDRDLTEKLKKRKGQDRKG-SPPKAPTRSMRSKAERAGALDELVKR 1359
            LEREMILEARATKRSDRDLTEKLKKRKGQDRKG SPPK  TR+MRSKA+RAGALDELVKR
Sbjct: 120  LEREMILEARATKRSDRDLTEKLKKRKGQDRKGSSPPKTHTRNMRSKAQRAGALDELVKR 179

Query: 1358 RRESAKGGSGKRYSPVKRRSFAAA-----TLNSPXXXXXXXXXXXXXXXXXXGLADSDDD 1194
            RR++AKGGSG RYSPVKRRSFAAA      L+SP                  GL DSDDD
Sbjct: 180  RRDAAKGGSGGRYSPVKRRSFAAAAATTTALSSPSRSDSGSHSDDGDSTGDGGLGDSDDD 239

Query: 1193 KISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVGIGKSRSGPIYRLCVV 1014
            K+S  SKVPTFEDI+EITIRRSKL+KWFMEP+FDELIVGCFVRVGIGKSRSG IYRLCVV
Sbjct: 240  KVS--SKVPTFEDIKEITIRRSKLSKWFMEPFFDELIVGCFVRVGIGKSRSGSIYRLCVV 297

Query: 1013 RNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAMISDSPPLKEEFDQWMREVER 834
            RNVDATDPDR+YK DNKTT K+LNVVWG++SSAARWQMAM+SDS P +EEFDQW++EVER
Sbjct: 298  RNVDATDPDRKYKLDNKTTSKWLNVVWGSESSAARWQMAMVSDSAPQREEFDQWVKEVER 357

Query: 833  SGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKSATWRPLNVAAEKDRLRRSLE 654
            +GGH+P+KQEV++K+DAIQ+ NT+VY AATVKQM++EKK                 RSLE
Sbjct: 358  NGGHMPTKQEVMEKRDAIQRTNTFVYSAATVKQMLQEKK-----------------RSLE 400

Query: 653  VAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEMNRRNRVENFK 504
            VAKEN+D+AEVERIK RL+ELE+SR+ LEK+SKA+KLAEMNR+NRVENFK
Sbjct: 401  VAKENEDDAEVERIKARLQELESSRQALEKNSKAVKLAEMNRKNRVENFK 450



 Score =  156 bits (395), Expect(2) = 0.0
 Identities = 89/150 (59%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRSRNYYV                    E  +  NGGG              
Sbjct: 469 YDPFSRRWTRSRNYYVGNSGGGVEA-----------EVAVETNGGGGA-ALPGLAATEAA 516

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKLVDT APVDQGTES +LHNFELPISL VLQKFGGP+G QAG+MARKQ +EA
Sbjct: 517 LVAAAGAGKLVDTMAPVDQGTESNLLHNFELPISLAVLQKFGGPQGTQAGFMARKQRIEA 576

Query: 117 NHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
             GVKVP+ DGRRH LTL+VSDYKRRRGLL
Sbjct: 577 TLGVKVPENDGRRHALTLSVSDYKRRRGLL 606


>gb|EPS59875.1| hypothetical protein M569_14929 [Genlisea aurea]
          Length = 643

 Score =  512 bits (1318), Expect(2) = e-179
 Identities = 276/466 (59%), Positives = 331/466 (71%), Gaps = 2/466 (0%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLEKLLLEAAGRT                                      YS RKPS
Sbjct: 1    MADLEKLLLEAAGRTTTSERNRPPSRRRRKHSNSDGGSDSRNDDSDGDHH---YSQRKPS 57

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEDDREKLSKLTE 1536
            +SQVPLKKR DP                                LYKDE+DREKLSKLTE
Sbjct: 58   SSQVPLKKRFDPTDRDDRSSQDGDEINSNHERDSDNDTIGSD--LYKDEEDREKLSKLTE 115

Query: 1535 LEREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSM-RSKAERAGALDELVKR 1359
            LEREMILE RATK SDRDLTEKLKKRKG D+K SP KA TRS  RSKAERAGALDELVKR
Sbjct: 116  LEREMILEGRATKISDRDLTEKLKKRKGHDKKLSPAKAHTRSSTRSKAERAGALDELVKR 175

Query: 1358 RRESAKGGSGK-RYSPVKRRSFAAATLNSPXXXXXXXXXXXXXXXXXXGLADSDDDKISA 1182
            RR++ KGG+ + RYSPVKRRSF AATL+SP                  G+ DSD+DK  +
Sbjct: 176  RRDAVKGGTTRSRYSPVKRRSFTAATLSSPSHSDSRSQSGEGESTGDGGIGDSDEDKTQS 235

Query: 1181 ESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVGIGKSRSGPIYRLCVVRNVD 1002
            +S VPTF+DI+EIT++RSKL KWFMEP+FDELI+GCFV+VGIGKSRSG +YRLCVVRNVD
Sbjct: 236  QSNVPTFDDIKEITVQRSKLLKWFMEPFFDELIIGCFVKVGIGKSRSGNVYRLCVVRNVD 295

Query: 1001 ATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAMISDSPPLKEEFDQWMREVERSGGH 822
            ++DP R Y F+N+ THKYL++VWG++SSAARWQM MIS+  P +EEFD W +EVER+GG+
Sbjct: 296  SSDPSRAYDFENRKTHKYLSLVWGSESSAARWQMKMISNEAPKREEFDLWFKEVERTGGN 355

Query: 821  LPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKSATWRPLNVAAEKDRLRRSLEVAKE 642
            +P++QEV +K++A+Q+ N +VY AATVKQMV+EKKSAT +P+NVA EKDRLRR++EVA+E
Sbjct: 356  MPTRQEVSEKREALQRINRFVYSAATVKQMVQEKKSATHKPINVALEKDRLRRAMEVARE 415

Query: 641  NKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEMNRRNRVENFK 504
            N D  E++ I+ +L ELE+SR+V EKDSKA KLAEMN +NR  NFK
Sbjct: 416  NDDHDEMKEIQRKLSELESSRKVPEKDSKAAKLAEMNSKNRKANFK 461



 Score =  145 bits (367), Expect(2) = e-179
 Identities = 84/153 (54%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRSRNYYV                   A T                      
Sbjct: 480 YDPFSRRWTRSRNYYVSNAATGIGEANGSANVASVAATAAALEAAAGA------------ 527

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKLVDT APVDQGTES +LH+FELPISL  LQ+ GGP+GAQAG MARKQ +EA
Sbjct: 528 -------GKLVDTNAPVDQGTESNLLHDFELPISLAALQRLGGPQGAQAGLMARKQWIEA 580

Query: 117 NHGVKVPD-DGRRHPLTLTVSDYKRRRGLL*FC 22
           N+GVKVP+ DGRRH LTLTVSDYKRRR  L  C
Sbjct: 581 NYGVKVPENDGRRHALTLTVSDYKRRRDPLTMC 613


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
            [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  495 bits (1274), Expect(2) = e-171
 Identities = 269/433 (62%), Positives = 319/433 (73%), Gaps = 22/433 (5%)
 Frame = -3

Query: 1736 YSSRKPSASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEDDRE 1557
            YS RK S SQVPLKKRLDP                               DLYKD+DDR+
Sbjct: 54   YSGRKLSGSQVPLKKRLDP-QERDDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQ 112

Query: 1556 KLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSMRSK------- 1398
            KL+++TELEREMIL  RA K+SDR L +K+ K + Q RK S P + +R MRS        
Sbjct: 113  KLAQMTELEREMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRA 172

Query: 1397 AERAGALDELVKRR-------------RESAKGGSGKR-YSPVKRRSFAAATL-NSPXXX 1263
            A+R  AL+E+  +R             R++A+ GSG R YSP+KRRSF AA+L +SP   
Sbjct: 173  ADRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGSRGYSPIKRRSFTAASLGSSPTRG 232

Query: 1262 XXXXXXXXXXXXXXXGLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 1083
                           G+ DSDDDK S ES++PTFEDI+EI+IRRSKLAKWFMEP+FDELI
Sbjct: 233  ESDSHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELI 292

Query: 1082 VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQ 903
            VGCFVRVGIG+SRSGPIYRLCVVRNVDA+DP+RQYK +NKTT K+LNVVWGN++SAARWQ
Sbjct: 293  VGCFVRVGIGRSRSGPIYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENSAARWQ 352

Query: 902  MAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKE 723
            MAMISDSPPL++EFDQW+REVERSGG +PSKQ+VL+KK+AIQK NT+VY A TVKQM+++
Sbjct: 353  MAMISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQ 412

Query: 722  KKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKL 543
            KKSATWRPLNVAAEKDRLRR +EVAK   DEAEVERIK RL+ELE SR+V EKD KA +L
Sbjct: 413  KKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELEDSRKVQEKDDKARRL 472

Query: 542  AEMNRRNRVENFK 504
            AEMNR+NRVENFK
Sbjct: 473  AEMNRKNRVENFK 485



 Score =  135 bits (339), Expect(2) = e-171
 Identities = 79/150 (52%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRS NY+                           +GG A             
Sbjct: 504 YDPFSRRWTRSTNYFAKGASNGEAAAAAALAAEDNNGAGGTADGGMAA--------TAAA 555

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKLVDT APVDQGTES  LH+F+LPISL VLQKFGG +G QAG+MARKQ +EA
Sbjct: 556 LQAAAGAGKLVDTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEA 615

Query: 117 NHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
             G  VP+ DGRRH LTL+VSDYKRRRGLL
Sbjct: 616 TVGCSVPENDGRRHALTLSVSDYKRRRGLL 645


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            tuberosum]
          Length = 652

 Score =  493 bits (1269), Expect(2) = e-170
 Identities = 267/433 (61%), Positives = 319/433 (73%), Gaps = 22/433 (5%)
 Frame = -3

Query: 1736 YSSRKPSASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEDDRE 1557
            YS RK S SQVPLKKRLDP                               DLYKD+DDR+
Sbjct: 54   YSGRKLSGSQVPLKKRLDP-QERDDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQ 112

Query: 1556 KLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSMRSK------- 1398
            KL+++TELEREMIL  RA K+SDR L +K+ K + Q RK S P + +R MRS        
Sbjct: 113  KLAQMTELEREMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRA 172

Query: 1397 AERAGALDELVKRR-------------RESAKGGSGKR-YSPVKRRSFAAATL-NSPXXX 1263
            A+R  AL+E+  +R             R++A+ GSG R YSP+KRRSF AATL +SP   
Sbjct: 173  ADRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGGRGYSPIKRRSFTAATLGSSPTRG 232

Query: 1262 XXXXXXXXXXXXXXXGLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 1083
                           G+ DSDDDK S ES++PTFEDI+EI+IRRSKLAKWFMEP+FDELI
Sbjct: 233  ESDSHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELI 292

Query: 1082 VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQ 903
            VGCFVRVGIG+SRSGPIYRLCVVRNVD++DP+RQYK +NKTT K+LNVVWGN++SAARWQ
Sbjct: 293  VGCFVRVGIGRSRSGPIYRLCVVRNVDSSDPNRQYKLENKTTSKFLNVVWGNENSAARWQ 352

Query: 902  MAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKE 723
            MAM+SDSPPL++EFDQW+REVERSGG +PSKQ+VL+KK+AIQK NT+VY A TVKQM+++
Sbjct: 353  MAMVSDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQ 412

Query: 722  KKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKL 543
            KKSATWRPLNVAAEKDRLRR +EVAK   DEAEVERIK RL+EL+ SR+V EKD KA +L
Sbjct: 413  KKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELDDSRKVQEKDDKARRL 472

Query: 542  AEMNRRNRVENFK 504
            AEMNR+NRVENFK
Sbjct: 473  AEMNRKNRVENFK 485



 Score =  134 bits (338), Expect(2) = e-170
 Identities = 79/150 (52%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRS NY+                    A      NG                
Sbjct: 504 YDPFSRRWTRSTNYFAKGANEEAEGASNGEVAAAAALAAEDNNGASGT-ADGGMAATAAA 562

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKLVDT APVDQGTES  LH+F+LPISL VLQKFGG +G QAG+MARKQ +EA
Sbjct: 563 LQAAAGAGKLVDTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEA 622

Query: 117 NHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
             G  VP+ DGRRH LTL+VSDYKRRRGLL
Sbjct: 623 TVGCSVPENDGRRHALTLSVSDYKRRRGLL 652


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  464 bits (1193), Expect(2) = e-164
 Identities = 261/491 (53%), Positives = 323/491 (65%), Gaps = 27/491 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDEDDREKLSKL 1542
             SQVPLKKRLDP                                  LYKDEDDR KLS++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 1541 TELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG-- 1383
            TEL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ A  A   
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSR-MRASARSADRS 179

Query: 1382 ----ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXXX 1251
                AL+EL  +R            RE+++    + +SP KR+ F + +L+S        
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPPKRKPFTSTSLSSSSHSESES 239

Query: 1250 XXXXXXXXXXXG--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVG 1077
                          + DSDDD+  A S+ P+F+D++EITIRRSKLAKWFMEP+F+ELIVG
Sbjct: 240  RSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVG 299

Query: 1076 CFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMA 897
            CFVRVGIG+S++GPIYRLC+V+NVDA++PDRQYK +NKTT+KYLNVVWGN+SSAARWQMA
Sbjct: 300  CFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMA 359

Query: 896  MISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKK 717
            M+SDS PL+EEF QW++EV+RSGG +PSKQ+VL+KK AIQK  T+VY AATVKQM++EKK
Sbjct: 360  MVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKK 419

Query: 716  SATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAE 537
            SA+ RPLNVAAEKDRLRR LE+A+   DEAEVERIKTRL ELEASR+  +KD+KA+KLAE
Sbjct: 420  SASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDAKALKLAE 479

Query: 536  MNRRNRVENFK 504
            MNR+NR ENFK
Sbjct: 480  MNRKNRFENFK 490



 Score =  144 bits (363), Expect(2) = e-164
 Identities = 86/151 (56%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGA-VFXXXXXXXXXX 301
           YDPFSRRWTRSRNYY                           NG GA V           
Sbjct: 509 YDPFSRRWTRSRNYYAAKPGEKAAAGNNSVNGNVAGAG---SNGTGAPVTAEAGMVATAA 565

Query: 300 XXXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVE 121
                   GKLVDT APVDQGTES MLHNFELPISL +LQKFGG +GAQAG+MARKQ +E
Sbjct: 566 ALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIE 625

Query: 120 ANHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
           A  G +V + DGRRH LTLTVSDYKRRRGLL
Sbjct: 626 ATVGFRVSENDGRRHALTLTVSDYKRRRGLL 656


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  461 bits (1187), Expect(2) = e-162
 Identities = 260/493 (52%), Positives = 327/493 (66%), Gaps = 29/493 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLE LLLEAAGRT                                     GYSSRKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---LYKDEDDREKLSK 1545
             SQVPLKKRLDP                                   LYK+EDDR KL++
Sbjct: 61   GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQ 120

Query: 1544 LTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAPTRSMRSKAERAG- 1383
            ++ELEREMIL  RA K+ D++LTE+++ ++  +R     K +PP   +R +R+ A  A  
Sbjct: 121  MSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADR 180

Query: 1382 ------ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXXX 1260
                  AL+EL  RR            R++++ GSG R +SP+KR+ F +A+L+S     
Sbjct: 181  AAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSSES 240

Query: 1259 XXXXXXXXXXXXXXG-LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 1083
                          G +ADSDDD     S+ PTF+DIREITIRRSKLAKWFMEP+F+ELI
Sbjct: 241  ESRSHSEDEGSTGDGGMADSDDDG-EPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELI 299

Query: 1082 VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQ 903
            VGCFVRVGIG+S+SGPIYRLC+VRNVDA DPDR YK +NKTT+KYLNV+WGN+SSAARWQ
Sbjct: 300  VGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQ 359

Query: 902  MAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKE 723
            MAMISDS P ++E+ QW+REVERSGG +P+KQ++L+KK+AI+K NT+VY AATVKQM++E
Sbjct: 360  MAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQE 419

Query: 722  KKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKL 543
            KKSA+ RPLNVAAEKDRLRR LEVA+  +D+AEVERI+ R++ELEASR+   KD+KAI+L
Sbjct: 420  KKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKDAKAIRL 479

Query: 542  AEMNRRNRVENFK 504
            AEMNR+NR ENF+
Sbjct: 480  AEMNRKNRAENFR 492



 Score =  140 bits (354), Expect(2) = e-162
 Identities = 81/150 (54%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRSRNYYV                               V            
Sbjct: 511 YDPFSRRWTRSRNYYVSKPAGGDAAAATNNEASGTVAVANKTESAAGVSAEAGMAATAAA 570

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKLVDT APVDQGTES  LHNFELPISLT LQKFGG +GAQAG+MARKQ +EA
Sbjct: 571 LEAAADAGKLVDTAAPVDQGTESNTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEA 630

Query: 117 NHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
             G +V + D +RH LTLTVSDYKRRRGLL
Sbjct: 631 TIGCRVSENDEKRHVLTLTVSDYKRRRGLL 660


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  463 bits (1192), Expect(2) = e-162
 Identities = 261/491 (53%), Positives = 325/491 (66%), Gaps = 27/491 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDEDDREKLSKL 1542
             SQVPLKKRLDP                                  LYKDEDDR KLS++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 1541 TELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG-- 1383
            TEL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ A  A   
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSR-MRASARSADRS 179

Query: 1382 ----ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXXX 1251
                AL+EL  +R            RE+++    + +SP KR++F + +L+S        
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAGPRHFSPPKRKTFTSTSLSSSSHSESES 239

Query: 1250 XXXXXXXXXXXG--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVG 1077
                          +ADSDDD+  A S+ P+F+DI+EITIRRSKLAKWFMEP+F+ELIVG
Sbjct: 240  RSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVG 299

Query: 1076 CFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMA 897
            CFVRVGIG+S++GPIYRLC+V+NVDA++PDRQYK +NKTT+KYLNVVWGN+SSAARWQMA
Sbjct: 300  CFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMA 359

Query: 896  MISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKK 717
            M+SDS P++EEF QW++EV+ SGG +PSKQ+VL+KK AIQK  T+VY AATVKQM++EKK
Sbjct: 360  MVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKK 419

Query: 716  SATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAE 537
            SA+ RPLNVAAEKDRLRR LE+A+   DEAEVERIKTRL+ELEASR+  +KD+KA+KLAE
Sbjct: 420  SASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDAKALKLAE 479

Query: 536  MNRRNRVENFK 504
            MNR+NR ENFK
Sbjct: 480  MNRKNRFENFK 490



 Score =  139 bits (349), Expect(2) = e-162
 Identities = 83/151 (54%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGA-VFXXXXXXXXXX 301
           YDPFSRRWTRSRNYY                           N  GA V           
Sbjct: 509 YDPFSRRWTRSRNYYAAKPGEKAAAGNNIVNGNVAGAG---SNATGAPVTAEAGMVATAA 565

Query: 300 XXXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVE 121
                   GKLVDT APVDQGTES MLHNFELPISL +LQK+GG  GAQAG+MARKQ +E
Sbjct: 566 ALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIE 625

Query: 120 ANHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
           +  G +V + DGRRH LTLTVSDYKRRRGLL
Sbjct: 626 STVGFRVSENDGRRHALTLTVSDYKRRRGLL 656


>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  460 bits (1184), Expect(2) = e-162
 Identities = 260/494 (52%), Positives = 321/494 (64%), Gaps = 30/494 (6%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLE LLLEAAGRT                                     GY+SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---LYKDEDDREKLSK 1545
             SQVPLKKRLDPA                                  LYK+EDDR KL++
Sbjct: 61   GSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQ 120

Query: 1544 LTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAPTRSMRSKAERAG- 1383
            +TELERE+IL  RA KR D+  TEK++ ++  DR     K +PP   +R +RS A  A  
Sbjct: 121  MTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADR 180

Query: 1382 ------ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXXX 1260
                  AL+EL  +R            R++++G SG R  SPVKR+ F A++L+S     
Sbjct: 181  AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSSSSQSD 240

Query: 1259 XXXXXXXXXXXXXXG--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDEL 1086
                             + DSDDD+       PTF+DI+EITIRRSKLAKWFMEP+F+EL
Sbjct: 241  SESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFEEL 300

Query: 1085 IVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARW 906
            IVGC+VRVGIG+S+SGPIYRLC+VRNVDAT+P+R YK +NKTT+KYLNVVWGN+SSAARW
Sbjct: 301  IVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSAARW 360

Query: 905  QMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVK 726
            QMAMISDSPP +EEF Q +RE+ERSGG +PSKQ+VL+KK+A+QK  T+VY AATVKQM++
Sbjct: 361  QMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQ 420

Query: 725  EKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIK 546
            EKKS + RPLN+AAEKDRLRR LE+A+   DEAEVERIK RL++LEASR+  EKD+KA++
Sbjct: 421  EKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKDAKAVR 480

Query: 545  LAEMNRRNRVENFK 504
            LAEMNR+NR ENFK
Sbjct: 481  LAEMNRKNRAENFK 494



 Score =  141 bits (355), Expect(2) = e-162
 Identities = 81/153 (52%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGG---AVFXXXXXXXX 307
           YDPFSRRWTRSRNYYV                       ++ +G G              
Sbjct: 513 YDPFSRRWTRSRNYYVAKPPGADAAAVANGDRIG-----VIASGNGNDARAAAEAGRAAT 567

Query: 306 XXXXXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQM 127
                     GKLVDT APVD+GTES MLH+FE+PISL  LQ+FGGP+GA AG+MARKQ 
Sbjct: 568 VAALQEAAGAGKLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQR 627

Query: 126 VEANHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
           +EA  G +VP+ DGRRH LTLTVSDYKRRRGLL
Sbjct: 628 IEATVGCQVPENDGRRHALTLTVSDYKRRRGLL 660


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
            gi|561032714|gb|ESW31293.1| hypothetical protein
            PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  459 bits (1180), Expect(2) = e-161
 Identities = 258/492 (52%), Positives = 322/492 (65%), Gaps = 28/492 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---LYKDEDDREKLSK 1545
             SQVPLKKRLDP+                                  LYKDEDDR KLS+
Sbjct: 61   GSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSE 120

Query: 1544 LTELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG- 1383
            +TEL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ A  A  
Sbjct: 121  MTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSR-MRASARSADR 179

Query: 1382 -----ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXX 1254
                 AL+EL  +R            RE+++    + +SP KR+ F + +L+S       
Sbjct: 180  SAKNDALNELRAKRLKQQDPEAHRKLREASRNAGPRHFSPPKRKPFTSTSLSSSSHSESE 239

Query: 1253 XXXXXXXXXXXXG--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIV 1080
                           + DSDDD+    S+ P+F+DI+EITIRRSKLAKWFMEP+F+ELIV
Sbjct: 240  SRSHSDDEGSTGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIV 299

Query: 1079 GCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQM 900
            GCFVRVGIG+S++GPIYRLC+V+NVDA++PDRQYK +NKTT+KYLNVVWGN+SSAARWQM
Sbjct: 300  GCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQM 359

Query: 899  AMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEK 720
            AM+SDS PL+EEF QW++EV+RSGG +P+KQ+VL+KK AIQK  T+VY AATVKQM++EK
Sbjct: 360  AMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQEK 419

Query: 719  KSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLA 540
            KSA+ RPLNVAAEKDRLRR LE+A+   DEAEV+RIK RL+ELEASR   +KD+KA+KLA
Sbjct: 420  KSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARLQELEASRHAKQKDAKALKLA 479

Query: 539  EMNRRNRVENFK 504
            EMNR+NR ENFK
Sbjct: 480  EMNRKNRFENFK 491



 Score =  139 bits (350), Expect(2) = e-161
 Identities = 80/150 (53%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRSRNYY                      +      G  V            
Sbjct: 510 YDPFSRRWTRSRNYYTGEKAAAGNNSVNGIVAGPGTNST-----GAPVTAEAGLVATAAA 564

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKLVDT APVDQGTES MLHNFELPISL +LQK+GG +GAQAG+MARKQ +E+
Sbjct: 565 LEAAADAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAQGAQAGFMARKQRIES 624

Query: 117 NHGVKV-PDDGRRHPLTLTVSDYKRRRGLL 31
             G +V  +DGRRH LTL+VSDYKRRRGLL
Sbjct: 625 TVGFRVLENDGRRHSLTLSVSDYKRRRGLL 654


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  449 bits (1154), Expect(2) = e-161
 Identities = 252/490 (51%), Positives = 320/490 (65%), Gaps = 26/490 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MA+LE LLLEAAGRT                                     GY++RKPS
Sbjct: 1    MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPS 60

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEDDREKLSKLTE 1536
             SQVPLKKRLDP                               DLYKD+DDR KL+++TE
Sbjct: 61   GSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSESDVGSDLYKDDDDRRKLAEMTE 120

Query: 1535 LEREMILEARATKRSDRDLTEKLKKR---KG---QDRKGSP-PKAPTRSMRSKAERAGAL 1377
            L+REMIL  RA+K+ D++L EKL+ +   KG   Q RK +P P +  RS    A+RA A 
Sbjct: 121  LQREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKETPLPSSRVRSSARSADRAAAK 180

Query: 1376 DELVK----------------RRRESAKGGSGKR-YSPVKRRSFAAATLNSPXXXXXXXX 1248
            D+ +                 + R++++GGSG R     KR+S+ A +L+S         
Sbjct: 181  DDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQSDSESE 240

Query: 1247 XXXXXXXXXXG--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 1074
                         + DSDD++    S+  TF+DI+E+T+RRSKLAKW MEP+F+ELIVGC
Sbjct: 241  SQSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEELIVGC 300

Query: 1073 FVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAM 894
            FVRVGIG+S+SGPIYRLC+VRNVDA++PDRQYK DNK THKYLNVVWGN++SAARWQMAM
Sbjct: 301  FVRVGIGRSKSGPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAARWQMAM 360

Query: 893  ISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKS 714
            +SDS P +EEF QW+REVERSGG +P+K ++LDKK++I+K NT+VY AATVKQM++EKKS
Sbjct: 361  VSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQMLQEKKS 420

Query: 713  ATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEM 534
            A+ RPLN+A EKDRLRR LEVA+   DE EV+RIKTRL+ELEASR+  + D+KAI+LAEM
Sbjct: 421  ASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAKAIRLAEM 480

Query: 533  NRRNRVENFK 504
            NR+NRVENFK
Sbjct: 481  NRKNRVENFK 490



 Score =  148 bits (374), Expect(2) = e-161
 Identities = 84/150 (56%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRSRNYYV                   +         G V            
Sbjct: 509 YDPFSRRWTRSRNYYVGKPGEVKEDSGANAGNNGASTDAENNGRHGIVAAEAGIAATEAA 568

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKLVDT APVDQGT S MLHNFELPISL+VLQKFGGP+GAQAG+MARKQ +EA
Sbjct: 569 LEAAADAGKLVDTNAPVDQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEA 628

Query: 117 NHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
             G +VP+ DGRRH LTL+V DYKRRRGLL
Sbjct: 629 TVGCRVPENDGRRHALTLSVGDYKRRRGLL 658


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 658

 Score =  450 bits (1158), Expect(2) = e-157
 Identities = 258/493 (52%), Positives = 321/493 (65%), Gaps = 29/493 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-YSSRKP 1719
            MADLE LLLEAAGRT                                       Y SRKP
Sbjct: 1    MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRDDDSDDELNYPSRKP 60

Query: 1718 SASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---LYKDEDDREKLS 1548
            S SQVPLKKRLDP                                   LYKDEDDR KLS
Sbjct: 61   SGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLS 120

Query: 1547 KLTELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG 1383
            +++EL+REMIL  RA+K+ D+ L  K+  K+ KG+     K SPP + +R MR+ A  A 
Sbjct: 121  EMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPPLSSSR-MRASARSAD 179

Query: 1382 ------ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXX 1257
                  AL+EL  +R            RE+++    +R+SP KR+SF +A L+S      
Sbjct: 180  RSAKNVALNELRAKRLKQQDPEARRRLREASRNSGPRRFSPPKRKSFTSANLSSSSHSDS 239

Query: 1256 XXXXXXXXXXXXXG--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 1083
                            +ADSDDD+  + S+ P+F+DI+EITIRRSKLAKWFMEP+F+ELI
Sbjct: 240  DSRSHSDDEGSTGDGGIADSDDDRALSGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELI 299

Query: 1082 VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQ 903
            VGCFVRVGIG+S++GPIYRLC+V+NVD++DPDRQYK +N+TTHKYLNVVWGN+SSAARWQ
Sbjct: 300  VGCFVRVGIGRSKTGPIYRLCMVKNVDSSDPDRQYKLENRTTHKYLNVVWGNESSAARWQ 359

Query: 902  MAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKE 723
            MAM+SDS PL+EEF QW++EVERSGG +P+KQ+VL+KK AIQK  T+VY A TVKQM++E
Sbjct: 360  MAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDVLEKKQAIQKIITFVYSADTVKQMLQE 419

Query: 722  KKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKL 543
            KKS++ RPLNVAAEKDRLRR +E+A+   DEAEVERIKTR++ELEASR    KD+KA+KL
Sbjct: 420  KKSSSSRPLNVAAEKDRLRREMEIAQSKNDEAEVERIKTRVQELEASRHAKVKDAKALKL 479

Query: 542  AEMNRRNRVENFK 504
            AEMNR+NR ENFK
Sbjct: 480  AEMNRKNRFENFK 492



 Score =  134 bits (338), Expect(2) = e-157
 Identities = 81/154 (52%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNG----GGAVFXXXXXXX 310
           YDPFSRRWTRSRNYYV                      L+   G    G  V        
Sbjct: 511 YDPFSRRWTRSRNYYVAKPGEKAAARKNTT------NVLVADAGSNITGVPVTAESGVVA 564

Query: 309 XXXXXXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQ 130
                      GKLVDT APVDQGTES  LHNFELPISL +L K+GG +GAQAG+MARKQ
Sbjct: 565 TAAALEAAADAGKLVDTSAPVDQGTESNFLHNFELPISLALLHKYGGAQGAQAGFMARKQ 624

Query: 129 MVEANHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
            +EA  G +V + DGRRH LTL+V DYKRRRGLL
Sbjct: 625 RMEATVGFRVSENDGRRHVLTLSVGDYKRRRGLL 658


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  445 bits (1145), Expect(2) = e-157
 Identities = 252/485 (51%), Positives = 314/485 (64%), Gaps = 21/485 (4%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLE LLLEAAGRT                                     GY+SRKPS
Sbjct: 1    MADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDEDDREKLSKL 1542
             +QVPLKKRLDP                                  LYKDEDDR KL+++
Sbjct: 61   GTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEM 120

Query: 1541 TELEREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSMRSKAERAGALDELV- 1365
            +EL+RE+IL  RA K+ D+ L EK + +K        P +  RS    A+RA A D+ + 
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPKK---ETPPLPSSRVRSSARSADRAAAKDDALN 177

Query: 1364 ---------------KRRRESAKGGSGKR-YSPVKRRSFAAA--TLNSPXXXXXXXXXXX 1239
                           ++ R++++G SG R +S + R+SF A   + +S            
Sbjct: 178  ELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQSDSDSRSHSED 237

Query: 1238 XXXXXXXGLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVG 1059
                    + DSDD++    S+  TF+DI+EITIRRSKLAKW MEP+F+ELIVGCFVRVG
Sbjct: 238  DGSTGEDPMMDSDDER----SEGLTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVG 293

Query: 1058 IGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAMISDSP 879
            IG+S+SGPIYRLC+VRNVDA+DPDR+YK +NKTTHKYLNVVWGN++SAARWQMAMISDS 
Sbjct: 294  IGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSA 353

Query: 878  PLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKSATWRP 699
            PL+EEF QW+REVERSGG LPSKQ+VL+KK+AI+K NT+VY AATVKQM++EKKSA+ RP
Sbjct: 354  PLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRP 413

Query: 698  LNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEMNRRNR 519
            LN+A EKDRLRR LEVA+   D+AEVERIKTRL++LEA R+   KDSKA++LAEMNR+NR
Sbjct: 414  LNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKAVRLAEMNRKNR 473

Query: 518  VENFK 504
            VENFK
Sbjct: 474  VENFK 478



 Score =  139 bits (349), Expect(2) = e-157
 Identities = 80/152 (52%), Positives = 92/152 (60%), Gaps = 3/152 (1%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRSRNYYV                        +++ G AV            
Sbjct: 497 YDPFSRRWTRSRNYYVSKPGEQKGEAEAIVDADGALAD--IESNGTAVVGAVRAGMAATA 554

Query: 297 XXXXXXXG--KLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMV 124
                  G  KL+DT APVD GTES ++HNFELPISL  LQKFGGP+GAQ G++ARKQ +
Sbjct: 555 AALEAAAGAGKLIDTSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRI 614

Query: 123 EANHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
           EA  G +VP+ DGRRH LTLTVSDYKRR GLL
Sbjct: 615 EATVGCRVPENDGRRHALTLTVSDYKRRMGLL 646


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  433 bits (1113), Expect(2) = e-153
 Identities = 247/494 (50%), Positives = 318/494 (64%), Gaps = 30/494 (6%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-YSSRKP 1719
            MADLE LLLEAAGRT                                       Y++RKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKP 60

Query: 1718 SASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---LYKDEDDREKLS 1548
            S SQVPLKKRL+                                    LYKDEDDR+KL+
Sbjct: 61   SGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLA 120

Query: 1547 KLTELEREMILEARATKRSDRDLTEKLKKRKGQD-----RKGSPPKAPTRSMRSKAERAG 1383
            +++EL+RE+IL  RA K+ D+ LTEK++ ++  D     RK +PP   +R +RS A  A 
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 1382 -------ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXX 1263
                   AL+EL  +R            R+ ++G +G R +S VK+ +F +A+L+S    
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSSSE 240

Query: 1262 XXXXXXXXXXXXXXXG-LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDEL 1086
                           G +ADSD+D +   SK PT+EDI+EITIRR+KLAKWFMEP+F+EL
Sbjct: 241  SGSRSHSEDEGSTGDGGMADSDED-VEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFEEL 299

Query: 1085 IVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARW 906
            I+GCFVRVGIG+S+SGP+YRLC+VRNVDA +PD+ YK +NK+T+KYLNV WG D+SAARW
Sbjct: 300  IIGCFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAARW 359

Query: 905  QMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVK 726
            QMAM+SDS P +EE+ QW+REVE  GG LPSKQ++L+KK+AI+K NT+VY AATVKQM++
Sbjct: 360  QMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQ 419

Query: 725  EKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIK 546
            EKKSA+ RPLNVAAEKDRLRR LE+A+   DEAEVERI  R++ELEASR    KD+KAI+
Sbjct: 420  EKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKDAKAIR 479

Query: 545  LAEMNRRNRVENFK 504
            LAEMNR+NRVENF+
Sbjct: 480  LAEMNRKNRVENFR 493



 Score =  139 bits (351), Expect(2) = e-153
 Identities = 81/151 (53%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGA-VFXXXXXXXXXX 301
           YDPFSRRWTRSRNYYV                      +   N   A V           
Sbjct: 512 YDPFSRRWTRSRNYYVSKPAEADDPVATKISEANETVAVAASNQVVAGVMSEAGVAATEA 571

Query: 300 XXXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVE 121
                   GKLVDT APVDQGTES  +H+FEL ISL  LQ+FGGP+GAQAG+MARKQ +E
Sbjct: 572 ALEAAADAGKLVDTSAPVDQGTESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIE 631

Query: 120 ANHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
           A  G +VP+ DGRRH LTLTV DYKRRRGLL
Sbjct: 632 ATVGCRVPENDGRRHALTLTVGDYKRRRGLL 662


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 657

 Score =  418 bits (1075), Expect(2) = e-153
 Identities = 244/501 (48%), Positives = 314/501 (62%), Gaps = 37/501 (7%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADL+ LLLEAAGRT                                     GY+SRKPS
Sbjct: 1    MADLDDLLLEAAGRTSSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--LYKDEDDREKLSKL 1542
             SQVPLKKRLDP+                                 LYKDE+DR KL+++
Sbjct: 61   GSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLAEM 120

Query: 1541 TELEREMILEARATKRSDRDLTEKLKKR--KG---QDRKGSPP--KAPTRSMRSKAERAG 1383
            +EL+RE+IL  RA K+ D+ L EK + +  KG   Q RK +PP   +  RS    A+RA 
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSARSADRAA 180

Query: 1382 ALDELV----------------KRRRESAKGGSG-KRYSPVKRRSFAAATLNSPXXXXXX 1254
            A D+ +                ++ R+ ++G  G K +S   ++SF+A   +S       
Sbjct: 181  AKDDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKNFSHTIKKSFSAVRRSSSSQSDSE 240

Query: 1253 XXXXXXXXXXXXGLADSDDDKISAESKVP----------TFEDIREITIRRSKLAKWFME 1104
                          + SDDD  SA+  +           TFEDI+EITIRRS+LAKW ME
Sbjct: 241  SR------------SHSDDDGSSADDAIDSDDERGNQGLTFEDIKEITIRRSRLAKWLME 288

Query: 1103 PYFDELIVGCFVRVGIGKSRSG-PIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGN 927
            P+F+ELIVGC VRVGIGK++SG PIYRLC V NVD++DPDRQYK +NKTTHKYLNVVWGN
Sbjct: 289  PFFEELIVGCCVRVGIGKTKSGRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGN 348

Query: 926  DSSAARWQMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAA 747
            ++SAARWQMAM+SDS PL+EE+DQW+REVE++GG LPSK++VL+KK+AI+K NT+VY A 
Sbjct: 349  ENSAARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAK 408

Query: 746  TVKQMVKEKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLE 567
            TVKQM++EKKSA+ RPLN+A EKDRLRR LE+A+   D+AEVERIK RL++LEA ++   
Sbjct: 409  TVKQMIQEKKSASSRPLNIALEKDRLRRELEIAQSKHDDAEVERIKARLEQLEARQQSQG 468

Query: 566  KDSKAIKLAEMNRRNRVENFK 504
            KDSKA++LAEMNR+NRV+NFK
Sbjct: 469  KDSKAVRLAEMNRKNRVDNFK 489



 Score =  152 bits (384), Expect(2) = e-153
 Identities = 84/150 (56%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRSRNYYV                      +     GG V            
Sbjct: 508 YDPFSRRWTRSRNYYVSKPDEQKDDAEANAVAAESLAEVETNGTGGVVAVRAGLEATAAA 567

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKL+DT APVDQGT S  LHNFELPISL  LQKFGGP+GAQ G+MARKQ +EA
Sbjct: 568 LEAAAGAGKLIDTMAPVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEA 627

Query: 117 NHGVKVP-DDGRRHPLTLTVSDYKRRRGLL 31
             GV+VP DDGRRH LTL+VSDYKRRRGLL
Sbjct: 628 TVGVRVPEDDGRRHALTLSVSDYKRRRGLL 657


>ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502110282|ref|XP_004493843.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 653

 Score =  434 bits (1115), Expect(2) = e-153
 Identities = 251/494 (50%), Positives = 315/494 (63%), Gaps = 30/494 (6%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLEKLLLEAAGR                                       Y  RKPS
Sbjct: 1    MADLEKLLLEAAGRNIHSLTPSRRKRRGEFLDGGSDSGDDDSDDDGDDHG---YRGRKPS 57

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEDDREKLSKLTE 1536
            A+QVPLKKR + +                               LYKDEDDR+KLS++TE
Sbjct: 58   ATQVPLKKRFETSGKDDDVSGDDDGSDREGDSSEDSDVGDD---LYKDEDDRQKLSEMTE 114

Query: 1535 LEREMILEARATKRSDRDLTEKL--KKRKGQ----DRKGSPP--------KAPTRSMRSK 1398
            L+REMIL  RA+K+ D+D   K+  K+ KG      R+ SPP        +A  RS    
Sbjct: 115  LQREMILSDRASKKDDKDFLGKIASKREKGAKATLSRRESPPPPLLSSRVRASARSADRS 174

Query: 1397 AERAGALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXX 1254
            A + GAL+EL  +R            +E +K G G+    +K + FA+  L+S       
Sbjct: 175  AAKDGALNELRAKRLKQLDPEAKLKLKEGSKSG-GRGLFSLKGKPFASTGLSSSSHSDSD 233

Query: 1253 XXXXXXXXXXXXG--LADSDDDKISAES--KVPTFEDIREITIRRSKLAKWFMEPYFDEL 1086
                           + DSDDD+I   S  +VP+FEDI+EITIRRSKLAKWFMEP+F+EL
Sbjct: 234  SRSRSDDEGSNGDGGIIDSDDDRIMTGSGFEVPSFEDIKEITIRRSKLAKWFMEPFFEEL 293

Query: 1085 IVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARW 906
            IVGCFVRVGIG+S++GPIYRLC+V+NVDA+DPDRQYK DNKTT+KYLNVVWGN++SAARW
Sbjct: 294  IVGCFVRVGIGRSKTGPIYRLCMVKNVDASDPDRQYKLDNKTTYKYLNVVWGNETSAARW 353

Query: 905  QMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVK 726
            QMAM+SDSPPL+EEF QW++EVERSGG +  K +V++K  AIQK N++VY AATVKQM++
Sbjct: 354  QMAMVSDSPPLEEEFKQWVKEVERSGGRMLMKLDVMEKNQAIQKINSFVYSAATVKQMIE 413

Query: 725  EKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIK 546
            EKKS + RPLNVAAEKDRL+R LE+A+  KD AEVE+IKTRL+ELEASR+   KD+KA++
Sbjct: 414  EKKSNSRRPLNVAAEKDRLKRQLEIAESKKDAAEVEKIKTRLQELEASRKTQAKDAKALR 473

Query: 545  LAEMNRRNRVENFK 504
            L+EMNR+NR ENFK
Sbjct: 474  LSEMNRKNRFENFK 487



 Score =  136 bits (342), Expect(2) = e-153
 Identities = 81/151 (53%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGA-VFXXXXXXXXXX 301
           YDPFSRRWTRSRNYY                           NG GA V           
Sbjct: 506 YDPFSRRWTRSRNYYNAKQAEEAAAGNNSSGGAVGDRG---SNGVGATVAGEAGVVATAE 562

Query: 300 XXXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVE 121
                   GKLVDTRAPVDQGTES  LHNFELPISLT+LQKFGG +G  AG++A+KQ +E
Sbjct: 563 ALEAAADAGKLVDTRAPVDQGTESNFLHNFELPISLTILQKFGGAQGVHAGFIAKKQRIE 622

Query: 120 ANHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
              G +VP+ DG+ H LTLTVSDYKRRRGLL
Sbjct: 623 EIVGFRVPENDGKSHMLTLTVSDYKRRRGLL 653


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
            gi|557524836|gb|ESR36142.1| hypothetical protein
            CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  432 bits (1112), Expect(2) = e-151
 Identities = 249/490 (50%), Positives = 311/490 (63%), Gaps = 26/490 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLE LLLEAAGRT                                      Y SRKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDNRG--YGSRKPS 58

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEDDREKLSKLTE 1536
             SQVPLKKRLDPA                                  +E D +   ++TE
Sbjct: 59   GSQVPLKKRLDPAERDDDQGSQEEGDYDGGASEHEGDS--------SNESDDDNHGQMTE 110

Query: 1535 LEREMILEARATKRSDRDLTEKLKKRKGQ----DRKGSPPKAPTRSMR---SKAERAGAL 1377
            LEREM++  R  K+ D++L +K + R+ +      K +PP   +RS R     A+RA A 
Sbjct: 111  LEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRAAAK 170

Query: 1376 DELV----------------KRRRESAKGGSGKRY-SPVKRRSFAAATLNSPXXXXXXXX 1248
            D+ +                +R R++++GGSG R  SPVKR++F  A L+S         
Sbjct: 171  DDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSESESR 230

Query: 1247 XXXXXXXXXXG--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 1074
                         +ADSDDD      + PT++DI+EITIRRSKLAKWFMEP+F+ELIVGC
Sbjct: 231  SHSDDEGSTGDGGMADSDDDGAPGSGR-PTYDDIKEITIRRSKLAKWFMEPFFEELIVGC 289

Query: 1073 FVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAM 894
            FVRVGIG+S++GPIYRLC+VRNVDAT+PDR YK +N+TT KYLNV WGN+SSAARWQMAM
Sbjct: 290  FVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAM 349

Query: 893  ISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKS 714
            +SDSPPL+EEF QW+REVER+GG +PSKQ+VL+KK++IQK NT+VY AATVKQM++EKKS
Sbjct: 350  VSDSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKS 409

Query: 713  ATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEM 534
            A+ RPLNVAAEKDRLRR LEVA+   D+ ++ERIK RL+ELEASR    KD+KAI+LAEM
Sbjct: 410  ASSRPLNVAAEKDRLRRELEVAQSRHDDVDMERIKKRLQELEASRDSKVKDAKAIRLAEM 469

Query: 533  NRRNRVENFK 504
            NR+NRVENFK
Sbjct: 470  NRKNRVENFK 479



 Score =  133 bits (335), Expect(2) = e-151
 Identities = 77/150 (51%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRSRNYY+                          NG                
Sbjct: 498 YDPFSRRWTRSRNYYISKPGEEVTAEANGDKNGVPGGA----NGEEGATGEVGMAATEAA 553

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKLVDT AP+D GTES MLH+FEL ISL  L+KFGGP+G  AG+MARKQ +EA
Sbjct: 554 LEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEA 613

Query: 117 NHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
             G +VP+ DGRRH LTLTV DYKRRRGLL
Sbjct: 614 TVGCQVPENDGRRHALTLTVGDYKRRRGLL 643


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  431 bits (1109), Expect(2) = e-151
 Identities = 245/496 (49%), Positives = 318/496 (64%), Gaps = 32/496 (6%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-YSSRKP 1719
            MADLE LLLEAAGRT                                       Y+SRKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 60

Query: 1718 SASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---LYKDEDDREKLS 1548
            S SQVPLKKRL+                                    LYKDEDDR+KL+
Sbjct: 61   SGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLA 120

Query: 1547 KLTELEREMILEARATKRSDRDLTEKLKKRKGQD-----RKGSPPKAPTRSMRSKAERAG 1383
            +++EL+RE+IL  RA K+ D+ LTEK++ ++  D     RK +PP   +R +RS A  A 
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 1382 -------ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXX 1263
                   AL+EL  +R            R++++G +G R ++ VK+ +F +A L+S    
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSSSE 240

Query: 1262 XXXXXXXXXXXXXXXG---LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFD 1092
                           G   +ADSD+D     S+ PT+EDI+EITIRR+KLAKWFMEP+F+
Sbjct: 241  SESGSRSHSEDEGSTGDGGMADSDEDG-DPGSRGPTYEDIKEITIRRTKLAKWFMEPWFE 299

Query: 1091 ELIVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAA 912
            ELI+GCFVRVGIG+S++GP+YRLC+VRNVDA +PD+ YK +NK+T+KYLNV WG DSSAA
Sbjct: 300  ELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSAA 359

Query: 911  RWQMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQM 732
            RWQMAM+SDS P +EE+ QW+RE ER GG LPSKQ++L+KK+AI+K NT+VY AATVKQM
Sbjct: 360  RWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQM 419

Query: 731  VKEKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKA 552
            ++EKKSA+ RPLNVAAEKDRLRR LE+A+   DEAEVERI+ R+ ELEASR+   KD+KA
Sbjct: 420  LQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKDAKA 479

Query: 551  IKLAEMNRRNRVENFK 504
            ++LAEMNR+NRVENF+
Sbjct: 480  LRLAEMNRKNRVENFR 495



 Score =  134 bits (336), Expect(2) = e-151
 Identities = 81/153 (52%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAV---FXXXXXXXX 307
           YDPFSRRWTRSRNYYV                    +T  V +    V            
Sbjct: 514 YDPFSRRWTRSRNYYVSNPAGGDDAVAASNSEAN--DTAAVADSDHVVAGAMSESGVAAT 571

Query: 306 XXXXXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQM 127
                     GKLVDT APVDQGTES  +HNFEL ISL  LQKF GP+GA AG+MARKQ 
Sbjct: 572 AAALDAAADAGKLVDTSAPVDQGTESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQR 631

Query: 126 VEANHGVKV-PDDGRRHPLTLTVSDYKRRRGLL 31
           +EAN G +V  +DGRRH LTLTV DYKRRRGLL
Sbjct: 632 IEANVGCQVRENDGRRHALTLTVGDYKRRRGLL 664


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Citrus sinensis]
          Length = 643

 Score =  431 bits (1109), Expect(2) = e-151
 Identities = 249/490 (50%), Positives = 309/490 (63%), Gaps = 26/490 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            MADLE LLLEAAGRT                                      Y SRKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDNRG--YGSRKPS 58

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEDDREKLSKLTE 1536
             SQVPLKKRLDP                                   +E D +   ++TE
Sbjct: 59   GSQVPLKKRLDPTERDDDQGSQEEGDYDGGASEHEGDS--------SNESDDDNHGQMTE 110

Query: 1535 LEREMILEARATKRSDRDLTEKLKKRKGQ----DRKGSPPKAPTRSMR---SKAERAGAL 1377
            LEREM++  R  K+ D++L +K + R+ +      K +PP   +RS R     A+RA A 
Sbjct: 111  LEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRAAAK 170

Query: 1376 DELV----------------KRRRESAKGGSGKRY-SPVKRRSFAAATLNSPXXXXXXXX 1248
            D+ +                +R R++++GGSG R  SPVKR++F  A L+S         
Sbjct: 171  DDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSESESR 230

Query: 1247 XXXXXXXXXXG--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 1074
                         +ADSDDD      + PT++DI+EITIRRSKLAKWFMEP+F+ELIVGC
Sbjct: 231  SHSDDEGSTGDGGMADSDDDGAPGSGR-PTYDDIKEITIRRSKLAKWFMEPFFEELIVGC 289

Query: 1073 FVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAM 894
            FVRVGIG+S++GPIYRLC+VRNVDAT+PDR YK +N+TT KYLNV WGN+SSAARWQMAM
Sbjct: 290  FVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAM 349

Query: 893  ISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKS 714
            +SDSPPL+EEF QW+REVER+ G +PSKQ+VL+KKD+IQK NT+VY AATVKQM++EKKS
Sbjct: 350  VSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQMLQEKKS 409

Query: 713  ATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEM 534
            A+ RPLNVAAEKDRLRR LEVA+   DE ++ERIK RL+ELEASR    KD+KAI+LAEM
Sbjct: 410  ASSRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKRLQELEASRDSKVKDAKAIRLAEM 469

Query: 533  NRRNRVENFK 504
            NR+NRVENFK
Sbjct: 470  NRKNRVENFK 479



 Score =  133 bits (335), Expect(2) = e-151
 Identities = 77/150 (51%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRSRNYY+                          NG                
Sbjct: 498 YDPFSRRWTRSRNYYISKPGEEVTAEANGDKNGVPGGA----NGEEGATGEVGMAATEAA 553

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKLVDT AP+D GTES MLH+FEL ISL  L+KFGGP+G  AG+MARKQ +EA
Sbjct: 554 LEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEA 613

Query: 117 NHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
             G +VP+ DGRRH LTLTV DYKRRRGLL
Sbjct: 614 TVGCQVPENDGRRHALTLTVGDYKRRRGLL 643


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
            gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
            [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score =  428 bits (1101), Expect(2) = e-147
 Identities = 243/490 (49%), Positives = 313/490 (63%), Gaps = 26/490 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            M DLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSRHPPSSRRREGSYSDGSSDSRDDSDEDRG---YASRKPS 57

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-LYKDEDDREKLSKLT 1539
             SQVPLKKRL+                                D LYK+E+DR+KL+ +T
Sbjct: 58   GSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMT 117

Query: 1538 ELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAPTRSMRSKAERAG--- 1383
            E +REMIL  RA K+ D++ TEKL+ ++  ++     K + P   +R +RS A  A    
Sbjct: 118  EFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAA 177

Query: 1382 ----ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXXXXX 1254
                AL+EL  +R            R+++KGGSG R +S +KR+  A++ L+S       
Sbjct: 178  AKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSMKRKPLASSNLSSSSQSDSD 237

Query: 1253 XXXXXXXXXXXXGLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 1074
                        G+ DSDDD+    S VPTFED++EITIRRSKLAKW MEP+F+ELIVGC
Sbjct: 238  SRSQSDDEGSNAGMLDSDDDR----SDVPTFEDVKEITIRRSKLAKWLMEPFFEELIVGC 293

Query: 1073 FVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAM 894
            FVRVGIG+S+SGPIYRLC V+NVDATDPD+ YK +NKTTHKYLNVVWGN++SAARWQMAM
Sbjct: 294  FVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMAM 353

Query: 893  ISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKS 714
            ISD  PL+EE+ QW+REVER+ G +P+KQ++ +KK+AIQ+ N++VY A TVKQM++EKKS
Sbjct: 354  ISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRINSFVYSAETVKQMLQEKKS 413

Query: 713  ATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEM 534
            A+ RP+NVAAEKDRLR+ LE+A+   DEA VERIKT++K+L+ASR     D KA+KLAEM
Sbjct: 414  ASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDASRNKKGVDKKALKLAEM 473

Query: 533  NRRNRVENFK 504
            N++NR ENFK
Sbjct: 474  NKKNRAENFK 483



 Score =  124 bits (312), Expect(2) = e-147
 Identities = 75/153 (49%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLI---VKNGGGAVFXXXXXXXX 307
           YDPFSRRWTRS NYY                     ET +   V+  G  V         
Sbjct: 502 YDPFSRRWTRSSNYY---------NGKNKGKDGEENETAVAAAVETNGADV--GAGVEAT 550

Query: 306 XXXXXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQM 127
                     GKL+DTRAP+ QG E   LHNFEL +SLT LQK+GGP+G Q  +MARKQ+
Sbjct: 551 EAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSLTALQKYGGPQGVQKAFMARKQV 610

Query: 126 VEANHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
            EA  G +V + DG+RH LTLTVSDYKRRRGLL
Sbjct: 611 TEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
            gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
            78902-80833 [Arabidopsis thaliana]
            gi|332195649|gb|AEE33770.1| Paf1C-like transcription
            factor [Arabidopsis thaliana]
          Length = 643

 Score =  427 bits (1098), Expect(2) = e-147
 Identities = 241/490 (49%), Positives = 312/490 (63%), Gaps = 26/490 (5%)
 Frame = -3

Query: 1895 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSSRKPS 1716
            M DLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSRHPPSSRRREGSYSDGSSDSRDDSDEDRG---YASRKPS 57

Query: 1715 ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-LYKDEDDREKLSKLT 1539
             SQVPLKKRL+                                D LYK+E+DR+KL+ +T
Sbjct: 58   GSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMT 117

Query: 1538 ELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAPTRSMRSKAERAG--- 1383
            E +REMIL  RA K+ D++ TEKL+ ++  ++     K + P   +R +RS A  A    
Sbjct: 118  EFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAA 177

Query: 1382 ----ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXXXXX 1254
                AL+EL  +R            R+++KGGSG R +S  KR+  A++ L+S       
Sbjct: 178  AKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSDSD 237

Query: 1253 XXXXXXXXXXXXGLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 1074
                        G+ DSDDD+    S VPTFED++E+TIRRSKLAKW MEP+F+ELIVGC
Sbjct: 238  SRSQSDDEGSNGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGC 293

Query: 1073 FVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAM 894
            FVRVGIG+S+SGPIYRLC V+NVDATDPD+ YK +NKTTHKYLNVVWGN++SAARWQMAM
Sbjct: 294  FVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMAM 353

Query: 893  ISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKS 714
            ISD  PL+EE+ QW+REVER+ G +P+KQ++ +KK+AIQ+ N++VY A TVKQM++EKKS
Sbjct: 354  ISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEKKS 413

Query: 713  ATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEM 534
            A+ RP+NVAAEKDRLR+ LE+A+   DEA VERIK+++K+L+ASR     D KA+KLAEM
Sbjct: 414  ASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALKLAEM 473

Query: 533  NRRNRVENFK 504
            N++NR ENFK
Sbjct: 474  NKKNRAENFK 483



 Score =  125 bits (314), Expect(2) = e-147
 Identities = 73/150 (48%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
 Frame = -2

Query: 477 YDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXAETLIVKNGGGAVFXXXXXXXXXXX 298
           YDPFSRRWTRS NYY                        +  NG  A             
Sbjct: 502 YDPFSRRWTRSSNYY-----NGKNKGKDGEENEAAVAAAVETNGADA---GAGVEATEAA 553

Query: 297 XXXXXXXGKLVDTRAPVDQGTESYMLHNFELPISLTVLQKFGGPKGAQAGYMARKQMVEA 118
                  GKL+DTRAP+ QG E   LHNFEL +SLT LQK+GGP+G Q  +MARKQ+ EA
Sbjct: 554 LEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSLTALQKYGGPQGVQKAFMARKQLTEA 613

Query: 117 NHGVKVPD-DGRRHPLTLTVSDYKRRRGLL 31
             G +V + DG+RH LTLTVSDYKRRRGLL
Sbjct: 614 TVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643