BLASTX nr result

ID: Mentha27_contig00019657 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00019657
         (4479 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   959   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        938   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   929   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   927   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           926   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   924   0.0  
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   924   0.0  
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   912   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     910   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   901   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     886   0.0  
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   881   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   877   0.0  
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...   872   0.0  
emb|CAA20201.1| putative transposable element [Arabidopsis thali...   864   0.0  
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   864   0.0  
emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]   861   0.0  
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   857   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              848   0.0  
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             848   0.0  

>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  959 bits (2479), Expect = 0.0
 Identities = 530/1258 (42%), Positives = 739/1258 (58%), Gaps = 18/1258 (1%)
 Frame = -1

Query: 4470 SKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYG--RDSITL 4297
            +K IDENID F K++ D+        D+  A++LL+++P  Y+ L   ++Y   R+ + L
Sbjct: 105  NKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRL 164

Query: 4296 DIVVNALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXX 4117
            D V+ A + KEREL   N  +       ARGRP             +             
Sbjct: 165  DDVMVAARDKERELSQNN--RPVVEGHFARGRPDG-----------KNNNQGNKGKNRSR 211

Query: 4116 XXXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENF----GEMYVVTDVSDMP 3949
                     C+ CG+ GH+ K C             + NGE+      E +    V    
Sbjct: 212  SKSADGKRVCWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLAT 271

Query: 3948 XXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICL 3769
                           +D+GCSFHM+P ++ F +++E+  GYV + N+    V G+G I +
Sbjct: 272  DETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKI 331

Query: 3768 KFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNN 3589
            + + G+   L +VR++P++  NL+S   LED G   K   G++KI+KG   + K +K++ 
Sbjct: 332  RNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDT 391

Query: 3588 LYICHAESVLDNVNCVNSVQ-DDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFC 3412
            LYI   + V +     +S +  D+T+LWH RLGHMS KG+EIL K G   ++ +  + FC
Sbjct: 392  LYIL--DGVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFC 449

Query: 3411 DSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGN-RYFLSVIDDYSR 3235
            + CV GKQH V F     P        L Y+H+D+WG    P+  GN +YF+S +DDYSR
Sbjct: 450  EDCVYGKQHRVSF----APAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSR 505

Query: 3234 KVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRH 3055
            KVW + L+ K +  ++F +WK ++ENQ+ +K+K LRTDNGLE+CN   +  C + GI RH
Sbjct: 506  KVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRH 565

Query: 3054 KTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGK 2875
            KT  YTPQQNG+ ER+NRT+++KVR +    G+ K+FW EA  TA YL+NRSPS  +   
Sbjct: 566  KTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFD 625

Query: 2874 CPEHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPG 2695
             PE  ++G LPDLS+L+ FGC A++H    KL PRS+K +F  YPEGVKGY++W   +  
Sbjct: 626  LPEEKWTGALPDLSSLRKFGCLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVW--VLED 683

Query: 2694 FKVVVSRDVIFNESE-FPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQL--PEMDPL 2524
             K V+SR+VIF E   F  L      + S+SD+   ++  +PD+   E         D  
Sbjct: 684  KKCVISRNVIFREQVMFKDLKGDSQNTISESDL--EDLRVNPDMNDQEFTDQGGATQDNS 741

Query: 2523 NDVHAENDYELGVNN----HDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEK 2356
            N   A   +   +N+     DEE       E    D  +  S YQL RDR RR +K   K
Sbjct: 742  NPSEATTSHNPVLNSPTHSQDEES------EEEDSDAVEDLSTYQLVRDRVRRTIKANPK 795

Query: 2355 FNEFQMSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKP 2176
            +NE  M  FA+   E     EP SY+EA+   +  +W  AMK EM S+  N TW LV KP
Sbjct: 796  YNESNMVGFAY-YSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKP 854

Query: 2175 DSISVVDCKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIML 2005
            + + ++ C+W+F  K      E+ RF ARLVAKGFTQKEG+DY EIF+PVVK  ++R +L
Sbjct: 855  EKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLL 914

Query: 2004 ALVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPR 1825
            ++V  +N EL+QMDV TAFLHG L++ IYM QPEGF   +  N VCLLK++LYGLKQSPR
Sbjct: 915  SMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPR 974

Query: 1824 QWNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNC 1645
            QWN+RFD+ M+ +K+ RS YD C+YFK  +    I+LL+YVDDML+ S     +  ++  
Sbjct: 975  QWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQL 1034

Query: 1644 LCDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASH 1465
            L   F+MKDLGDA+KILGM I R+R    L L+Q  YV+K+L  F M NAKPV+ PL  H
Sbjct: 1035 LSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIH 1094

Query: 1464 FVLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHW 1285
            F L      + + +   MK VPY+N IGS+MY MI TRPD+AY + ++SR+MS P   HW
Sbjct: 1095 FKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHW 1154

Query: 1284 EALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCIS 1105
            +A+KW+LRY++ T    L F K  D L L GY DS+  ++ D R+S T YVFT+ G+ IS
Sbjct: 1155 QAVKWVLRYMRGTEKKKLCFRKQEDFL-LRGYCDSDYGSNFDTRRSITGYVFTVGGNTIS 1213

Query: 1104 WKSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKN 925
            WKS+LQ +VA+S           A KEA+WLKG  +E+ H      V SDSQSAI L KN
Sbjct: 1214 WKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAITLAKN 1273

Query: 924  PVFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKILN 751
             V H+RTKHI++R HFIRDI+  G++K  KI T+ NPA++ TK +P+ K   F+  LN
Sbjct: 1274 SVHHERTKHIDIRLHFIRDIICAGLIKVVKIATECNPANIFTKTVPLAK---FEGALN 1328


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  938 bits (2425), Expect = 0.0
 Identities = 526/1243 (42%), Positives = 745/1243 (59%), Gaps = 15/1243 (1%)
 Frame = -1

Query: 4461 IDENIDVFTKLLQDIKSTGDKNI-DDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVV 4285
            I ++ID F K++ D++   +  I D+  A  LL+++P+SY      + YGR ++TL+ V 
Sbjct: 120  IQDHIDTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVK 179

Query: 4284 NALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXX 4105
             +L SKE + K+C +  S+   + AR                                  
Sbjct: 180  ASLSSKEIQ-KNCELETSNGEGLMARTEKKKDQK--------NKNQGKGHGKNQETADKK 230

Query: 4104 XXXXKCYSCGEPGHYAKDCSXXXXXXNEH----ANVASNGENFGEMYVVTDVSDMPXXXX 3937
                KC+ C + GHY +DC       ++     A VAS+  + G  Y   D+        
Sbjct: 231  KKKRKCFYCRKEGHYIRDCFEKKKKESQEKSGDAAVASDDGSDG--YQSADL------LV 282

Query: 3936 XXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMG----EICL 3769
                       +DSGCSFH+ P + LF  YE V  G V + N   CN++G+       CL
Sbjct: 283  ASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCL 342

Query: 3768 KFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNN 3589
                  + +L  VRH P L  NL+S   L+ +G   K   G +++ KG+ +V K   +N 
Sbjct: 343  MEL---LRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENG 399

Query: 3588 LYICHAESV--LDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPF 3415
            LY+    SV   + V+ V+  ++D+T LWH RLGHMS KGL+ L K G+ G D++  + F
Sbjct: 400  LYVLQGSSVPVQEGVSAVS--EEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEF 457

Query: 3414 CDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSR 3235
            C++C+ GK H  +F  +   +MSK   VL+Y H D WG + VPS  G RYF+S+IDDYSR
Sbjct: 458  CENCIFGKSHRSKF--NKGEHMSK--QVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSR 513

Query: 3234 KVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRH 3055
            KVW ++LK K   L++F+ WK+L+ENQ+  K+K LRTDNGLEFC+K+ ++ C K+GIKRH
Sbjct: 514  KVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRH 573

Query: 3054 KTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGK 2875
            KTV +TPQQNG+ ERMNRTL++K RC+ +   L + FW EA++TA+YLVNRSPS  +  K
Sbjct: 574  KTVRFTPQQNGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFK 633

Query: 2874 CPEHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPG 2695
             PE +++GK  +  NL+VFGC A++H    KLE R+ K VF+GYP+GVKGY++W +    
Sbjct: 634  TPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG- 692

Query: 2694 FKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDV 2515
             K +VSRDV+F+ES    L  S        D   +      + +   VE L   D  ++ 
Sbjct: 693  -KCIVSRDVVFHESVL--LKESAEHDAGLQDNPAANKRSGSETSKVNVELL--TDKSSEK 747

Query: 2514 HAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMS 2335
             A +D        DE    E     V +       NYQL RDR RR V+ P ++    + 
Sbjct: 748  EAASD--------DERATAESEEHEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLI 799

Query: 2334 FFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVD 2155
             +A    + +   EP ++ EA++S +  +WL AM+ EM SL  N+TW L+P P +  +++
Sbjct: 800  AYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLIN 859

Query: 2154 CKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFN 1984
            CKW+FK      + E  ++KARLVA+GFTQ+EG+D+ EIF+PVVK +++RI+LA+VA  +
Sbjct: 860  CKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLD 919

Query: 1983 WELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFD 1804
             EL+QMDV TAFLHG+L++ I M QPEGF      ++VCLL K+LYGLKQSPRQW  RFD
Sbjct: 920  LELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFD 979

Query: 1803 KCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKM 1624
              M S  ++RS YD C+YF   D     +LL+YVDDML+ S     I+ ++N L   F+M
Sbjct: 980  DFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEM 1039

Query: 1623 KDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQ 1444
            KDLG+A++ILGM+I+R+R   TL L+Q  Y++K+L +F M + KPV  PL   F LS   
Sbjct: 1040 KDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAAT 1099

Query: 1443 SPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLL 1264
            + +++S+MN   + PY+ A+GS+MY M+CTR DIAY VS++SRY+S PG  HW A+KW++
Sbjct: 1100 TSEDESQMN---EFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIM 1156

Query: 1263 RYLKSTMNVGLHFSKC-SDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQ 1087
            RYLK +   GL + K  SD ++++G+VDS+ A D D RKST+ Y+F L    ISWKS LQ
Sbjct: 1157 RYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQ 1216

Query: 1086 GIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDR 907
               ALS           A KEA+WL+GLL+E+    K   VF D+Q+AI L KN ++H+R
Sbjct: 1217 SGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHER 1276

Query: 906  TKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            TKHI+V+  FIRD V KG V   KIHT VNPAD  TK LP  K
Sbjct: 1277 TKHIDVKLQFIRDEVGKGTVVVSKIHTSVNPADALTKSLPTAK 1319


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  929 bits (2400), Expect = 0.0
 Identities = 511/1238 (41%), Positives = 733/1238 (59%), Gaps = 12/1238 (0%)
 Frame = -1

Query: 4455 ENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNAL 4276
            +++  F +++ D++S   K  ++   ++LL ++P SY + +  I Y RD++TL  V +AL
Sbjct: 326  DHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDAL 385

Query: 4275 KSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXX 4096
              KE+  K      S+ +   A G                                    
Sbjct: 386  HVKEKMKKMVPSEGSNSQ---AEG--LIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRY 440

Query: 4095 XKCYSCGEPGHYAKDCSXXXXXXNEHANVASNG--ENFGEMYVVTDV-SDMPXXXXXXXX 3925
              C  C   GH   +C                G  E  G+  VVTD  SD          
Sbjct: 441  KSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGC 500

Query: 3924 XXXXXXXV-DSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNV 3748
                   + ++ C +HM P R+ F+ YE V+ G V + ++  C V G+G + +K   G +
Sbjct: 501  AQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCI 560

Query: 3747 FTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAE-KQNNLYICHA 3571
             TL +VRH+P+L  +L+S   L+  G +   G G++K+ KGSLVV KA+ K  NLY    
Sbjct: 561  RTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG 620

Query: 3570 ESVLDNVNCVNSV--QDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVL 3397
             ++L NV  V+      D T+LWH RLGHM+  GL  L K G+     +  + FC+ C+ 
Sbjct: 621  TTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIF 680

Query: 3396 GKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFL 3217
            GK   V+F  S+         +L+Y+H+D+WG +   S GG RY ++++DDYSRKVW + 
Sbjct: 681  GKHKRVKFNTST----HTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYF 736

Query: 3216 LKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYT 3037
            LK+K    D F++WKT++E QT +K+K LRTDNG+EFC+K+    C   GI RH TVP+T
Sbjct: 737  LKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHT 796

Query: 3036 PQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVF 2857
            PQQNGV ERMNRT++ K RCL    GL K+FW EA+ TA YL+NRSPS  +  K P  V+
Sbjct: 797  PQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVW 856

Query: 2856 SGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVS 2677
            SG   + S+L+VFGC A+ H    KLEPR+ KC+FLGYP GVKGY+LW       KVV+S
Sbjct: 857  SGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVIS 914

Query: 2676 RDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAENDY 2497
            R+V+F+E        SV   +  S   P E ++   +   +VE L     ++  HA    
Sbjct: 915  RNVVFHE--------SVMLHDKPSTNVPVESQEKASV---QVEHL-----ISSGHAPEKE 958

Query: 2496 ELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKF-NEFQMSFFAFN 2320
            ++ + N DE  +     E  +  +   +    + +DR +R +KPP+++  E  +  +A +
Sbjct: 959  DVAI-NQDEPVI-----EDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALS 1012

Query: 2319 VFESLD-NSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCKWL 2143
            V E ++ N+EP++Y EAI S++   W+ AM  EM SL  N TW LV  P     + CKW+
Sbjct: 1013 VAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWI 1072

Query: 2142 FKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWELK 1972
            FK K     ++  R+KARL+AKG++Q  GID+ ++F+PVVK +++R +L++VA  ++EL+
Sbjct: 1073 FKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELE 1132

Query: 1971 QMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKCMQ 1792
            QMDV TAFLHG+L++ IYM+QP+GFV     N VC LKK+LYGLKQSPRQW  RFD  M 
Sbjct: 1133 QMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFML 1192

Query: 1791 SLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKDLG 1612
            S KF+RS YD C+Y K VD    I+LL+YVDDML+ +     I  ++  L   F+MKDLG
Sbjct: 1193 SQKFRRSNYDSCVYLKVVDGSA-IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLG 1251

Query: 1611 DARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSPKN 1432
             A+KILGM I R R    L L+Q  Y+EK+L +F+M +AKPV+ PLA+HF LS +  P++
Sbjct: 1252 AAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQS 1311

Query: 1431 DSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRYLK 1252
            D ++  M +VPYS+A+GS+MY M+C+RPD+++ +S++SRYM+NPG  HW+A++W+ RYL+
Sbjct: 1312 DYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLR 1371

Query: 1251 STMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIVAL 1072
             T +  L F +  DG  LVGYVDS+ A D D  +S   YVFT+ G  +SWK+ LQ  VAL
Sbjct: 1372 GTSSACLQFGRSRDG--LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVAL 1429

Query: 1071 SXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKHIE 892
            S           A KEAIWL+GL + +C +     +F DSQSAI L K+ +FH+RTKHI+
Sbjct: 1430 STTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHID 1489

Query: 891  VRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            VR+HFIR ++ +G VK  KI    NPADM TK +P  K
Sbjct: 1490 VRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATK 1527


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  927 bits (2396), Expect = 0.0
 Identities = 514/1248 (41%), Positives = 733/1248 (58%), Gaps = 27/1248 (2%)
 Frame = -1

Query: 4440 FTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALKSKER 4261
            F K++ D+ S   K  D+   ++LL ++P SY + +  I   RD +TL  V +AL++KE+
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181

Query: 4260 -ELKHCNIGKSSER--VMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXXXK 4090
             ++   N G SS +   +H RGR                                     
Sbjct: 182  MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR----------GRSKSKPPGNKKF 231

Query: 4089 CYSCGEPGHYAKDCSXXXXXXNEH--------ANVASNGENFGEMYVVTDVSDMPXXXXX 3934
            C  C    H   +C        ++        A+ A++ ++ G+  VV            
Sbjct: 232  CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVV----------FA 281

Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHG-YVSLANEKKCNVLGMGEICLKFAS 3757
                      +DS CSFH+   RN FS+Y+ V+ G  V + ++  C ++G+G + +K   
Sbjct: 282  GCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDD 341

Query: 3756 GNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQN-NLYI 3580
            G   TLKNVR++P +  NL+S + L+  G +     GV+K+ KGSLV  K +  +  LY+
Sbjct: 342  GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYV 401

Query: 3579 CHAESVLDNVNCVNSVQDD---KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCD 3409
                ++  + +   +V +D   KT+LWH RLGHMS+ G+  L K  +      S + FC+
Sbjct: 402  LRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCE 461

Query: 3408 SCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKV 3229
             C+ GK   VQF  S    +      L+Y+HAD+WG S  PS GG RY L+VIDDYSRKV
Sbjct: 462  HCIFGKHKRVQFNTS----VHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKV 517

Query: 3228 WTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKT 3049
            W + LK+K D    F+ WK +IE QT +K+K LRTDNG EFC+   +D C + GI RH T
Sbjct: 518  WPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHT 577

Query: 3048 VPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCP 2869
            +P+TPQQNGV ERMNRT++ + RC+     ++KRFW EA  TA YL+NRSPS+PL  K P
Sbjct: 578  IPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTP 637

Query: 2868 EHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFK 2689
              V+SG   D S LKVFGC A+ H    KLEPR+ KC+FLGY  GVKGY+LW+      K
Sbjct: 638  IEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG--K 695

Query: 2688 VVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHA 2509
              +SR V+FNE        SV  +NS     PSE     ++    + Q+  +D    V  
Sbjct: 696  TFMSRSVVFNE--------SVMFTNS----LPSEHVPEKELQRMHM-QVEHVDDDTGVQV 742

Query: 2508 ENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRD------RSRRVVKPPEK-FN 2350
            E  +E   +N+D      +  +  HDDV       QL  +      +S+R  KPP++   
Sbjct: 743  EPVHEQDDHNND------VADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE 796

Query: 2349 EFQMSFFAFNVFESLDN-SEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPD 2173
            E  +S++A +  E ++N  EP +Y+EA++  +S  W++AM  EM SL  N TW +VP P 
Sbjct: 797  ECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPK 856

Query: 2172 SISVVDCKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLA 2002
                + CKW+FK K     +E  ++KARLVA+G++Q  G+DY ++F+PVVK +++R  L+
Sbjct: 857  KKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLS 916

Query: 2001 LVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQ 1822
            +VA  + EL+Q+DV TAFLHG+L++ IYM QPEGF+      +VC LK++LYGLKQSPRQ
Sbjct: 917  IVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQ 976

Query: 1821 WNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCL 1642
            WN RFD  M S  FKRS YD C+Y K V+   PI+LL+YVDDML+ +     I  ++  L
Sbjct: 977  WNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLIAAKSKIEITKLKKLL 1035

Query: 1641 CDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHF 1462
               F MKDLG A+KILGM I R+RK   L L+Q +Y++K+L +F+M NAK V+ P+A HF
Sbjct: 1036 SSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHF 1095

Query: 1461 VLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWE 1282
             LS  Q P  D+E+  M +VPYS+A+GS+MY M+C+RPD++Y +S++SRYMSNPG  HW 
Sbjct: 1096 KLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWR 1155

Query: 1281 ALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISW 1102
            A++W+ RYL+ T    L F +   G  L+GYVDS+ A D D R+S T YVFT+    +SW
Sbjct: 1156 AVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSW 1213

Query: 1101 KSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNP 922
            ++ LQ +VALS           A KE IWLKGL +E+  ++    +  DSQSAI L K+ 
Sbjct: 1214 RATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQ 1273

Query: 921  VFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            +FH+RTKHI++++HF+RD++++G +K  KI T  NPADM TK +PV K
Sbjct: 1274 MFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAK 1321


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  926 bits (2394), Expect = 0.0
 Identities = 514/1245 (41%), Positives = 722/1245 (57%), Gaps = 20/1245 (1%)
 Frame = -1

Query: 4452 NIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALK 4273
            +I  F K++ D+ S   K  D+   ++LL ++P SY + +  I   RD +TL  V +AL+
Sbjct: 120  HIAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQ 179

Query: 4272 SKER-ELKHCNIGKSSER--VMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXX 4102
            +KE+ ++   N G SS +   +H RGR                                 
Sbjct: 180  NKEKMKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRR----------GRSKSKPPG 229

Query: 4101 XXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXXXXXX 3922
                C  C    H   +C        E  N      +     V  D S            
Sbjct: 230  NKKFCVYCKLKNHNIDECKKVQAK--ERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVA 287

Query: 3921 XXXXXXVDSGCSFHMSPFRNLFSNYEEVKHG-YVSLANEKKCNVLGMGEICLKFASGNVF 3745
                  +DS CSFH+   RN FS+Y+ V+ G  V + ++  C ++G+G + +K   G   
Sbjct: 288  GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 347

Query: 3744 TLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQN-NLYICHAE 3568
            TLKNVR++P +  NL+S + L+  G +     GV+K+ KGSLV  K +  +  LY+    
Sbjct: 348  TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGC 407

Query: 3567 SVLDNVNCVNSVQDD---KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVL 3397
            ++  + +   +V +D   KT+LWH RLGHMS+ G+  L K  +      S + FC+ C+ 
Sbjct: 408  TLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIF 467

Query: 3396 GKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFL 3217
            GK   VQF  S    +      L+Y+HAD+WG S  PS GG RY L++IDDYSRKVW + 
Sbjct: 468  GKHKRVQFNTS----VHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYF 523

Query: 3216 LKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYT 3037
            LK+K D    F+ WK +IE QT +K+K L TDNG EFC+   +D C + GI RH T+P+T
Sbjct: 524  LKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHT 583

Query: 3036 PQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVF 2857
            PQQNGV ERMNRT++ + RC+     ++KRFW EA  TA YL+NRSPS+PL  K P  V+
Sbjct: 584  PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 643

Query: 2856 SGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVS 2677
            SG   D S LKVFGC A+ H    KLEPR+ KC+FLGY  GVKGY+LW+      K  +S
Sbjct: 644  SGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG--KTFMS 701

Query: 2676 RDVIFNES-EFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAEND 2500
            R V+FNES  F     S      +      +VE   D    +VE + E D  N+  A++D
Sbjct: 702  RSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDD 761

Query: 2499 YELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRD------RSRRVVKPPEK-FNEFQ 2341
                                 HDDV       QL  D      +S+R  KPP++   E  
Sbjct: 762  --------------------AHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECN 801

Query: 2340 MSFFAFNVFESLDN-SEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSIS 2164
            +S++A +  E ++N  EP +Y+EA++  +S  W++AM  EM SL  N TW +VP P    
Sbjct: 802  LSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKK 861

Query: 2163 VVDCKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVA 1993
             + CKW+FK K     +E  ++KARLVA+G++Q  G+DY ++F+PVVK +++R  L++VA
Sbjct: 862  TISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVA 921

Query: 1992 QFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNI 1813
              + EL+Q+DV TAFLHG+L++ IYM QPEGF+      +VC LK++LYGLKQSPRQWN 
Sbjct: 922  SHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNK 981

Query: 1812 RFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDN 1633
            RFD  M S  FKRS YD C+Y K V+   PI+LL+YVDDML+ +     I  ++  L   
Sbjct: 982  RFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLIAAKSKIEITKLKKLLSSE 1040

Query: 1632 FKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLS 1453
            F MKDLG A+KILGM I R+RK   L L+Q +Y++K+L +F+M NAK V+ P+A HF LS
Sbjct: 1041 FDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLS 1100

Query: 1452 KEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALK 1273
              Q P  D+E+  M +VPYS+A+GS+MY M+C+RPD++Y +S++SRYMSNPG  HW AL+
Sbjct: 1101 AAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQ 1160

Query: 1272 WLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQ 1093
            W+ RYL+ T    L F +   G  L+GYVDS+ A D D R+S T YVFT+    +SW++ 
Sbjct: 1161 WIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRAT 1218

Query: 1092 LQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFH 913
            LQ +VALS           A KE IWLKGL +E+  ++    +  DSQSAI L K+ +FH
Sbjct: 1219 LQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFH 1278

Query: 912  DRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            +RTKHI++++HF+RD++++G +K  KI T  NPADM TK +PV K
Sbjct: 1279 ERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAK 1323


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  924 bits (2388), Expect = 0.0
 Identities = 511/1248 (40%), Positives = 731/1248 (58%), Gaps = 27/1248 (2%)
 Frame = -1

Query: 4440 FTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALKSKER 4261
            F K++ D+ S   K  D+   ++LL ++P SY + +  I   RD +TL  V +AL++KE+
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181

Query: 4260 -ELKHCNIGKSSER--VMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXXXK 4090
             ++   N G SS +   +H RGR                                     
Sbjct: 182  MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR----------GRSKSKPPGNKKF 231

Query: 4089 CYSCGEPGHYAKDCSXXXXXXNEH--------ANVASNGENFGEMYVVTDVSDMPXXXXX 3934
            C  C    H   +C        ++        A+ A++ ++ G+  VV            
Sbjct: 232  CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVV----------FA 281

Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHG-YVSLANEKKCNVLGMGEICLKFAS 3757
                      +DS CSFH+   RN FS+Y+ V+ G  V + ++  C ++G+G + +K   
Sbjct: 282  GCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDD 341

Query: 3756 GNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQN-NLYI 3580
            G   TLKNVR++P +  NL+S + L+  G +     GV+K+ KGSLV  K +  +  LY+
Sbjct: 342  GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYV 401

Query: 3579 CHAESVLDNVNCVNSVQDD---KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCD 3409
                ++  + +   +V +D   KT+LWH RLGHMS+ G+  L K  +      S + FC+
Sbjct: 402  LRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCE 461

Query: 3408 SCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKV 3229
             C+ GK   VQF  S    +      L+Y+HAD+WG S  PS GG RY L++IDDYSRKV
Sbjct: 462  HCIFGKHKRVQFNTS----VHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKV 517

Query: 3228 WTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKT 3049
            W + LK+K D    F+ WK +IE QT +K+K LRTDNG EFC+   +D C + GI RH T
Sbjct: 518  WPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHT 577

Query: 3048 VPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCP 2869
            +P+TPQQNGV ERMNRT++ + RC+     ++KRFW EA  TA YL+NRSPS+PL  K P
Sbjct: 578  IPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTP 637

Query: 2868 EHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFK 2689
              V+SG   D S LKVFGC A+ H    KLEPR+ KC+FLGY  GVKGY+LW+      K
Sbjct: 638  IEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG--K 695

Query: 2688 VVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHA 2509
              +SR V+FNE        SV  +NS     PSE     ++    + Q+  +D    V  
Sbjct: 696  TFMSRSVVFNE--------SVMFTNS----LPSEHVPEKELQRMHM-QVEHVDDYTGVQV 742

Query: 2508 ENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRD------RSRRVVKPPEK-FN 2350
            E  +E   +N+D      +  +  HDDV       QL  +      +S+R  KPP++   
Sbjct: 743  EPVHEQDDHNND------VADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE 796

Query: 2349 EFQMSFFAFNVFESLDN-SEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPD 2173
            E  +S++A +  E ++N  EP +Y+EA++  +S  W++AM  EM SL  N TW +VP P 
Sbjct: 797  ECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPK 856

Query: 2172 SISVVDCKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLA 2002
                + CKW+FK K     +E  ++KARLVA+G++Q  G+DY ++F+PVVK +++R  L+
Sbjct: 857  KKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLS 916

Query: 2001 LVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQ 1822
            +VA  + EL+Q+DV TAFLHG+L++ IYM QPEGF+      +VC LK++LYGLKQSPRQ
Sbjct: 917  IVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQ 976

Query: 1821 WNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCL 1642
            WN RFD  M S  FKRS YD C+Y K V+   PI+LL+YVDDML+ +     I  ++  L
Sbjct: 977  WNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLIAAKSKIEITKLKKLL 1035

Query: 1641 CDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHF 1462
               F MKDLG A+KIL M I R+RK   L L+Q +Y++K+L +F+M NAK V+ P+A HF
Sbjct: 1036 SSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHF 1095

Query: 1461 VLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWE 1282
             LS  Q P  D+E+  M +VPYS+A+GS+MY M+C+RPD++Y +S++SRYMSNPG  HW 
Sbjct: 1096 KLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWR 1155

Query: 1281 ALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISW 1102
             ++W+ RYL+ T    L F +   G  L+GYVDS+ A D D R+S T YVFT+    +SW
Sbjct: 1156 VVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSW 1213

Query: 1101 KSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNP 922
            ++ LQ +VALS           A KE IWLKGL +E+  ++    +  DSQSAI L K+ 
Sbjct: 1214 RATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQ 1273

Query: 921  VFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            +FH+RTKHI++++HF+RD++++G +K  KI T  NPADM TK +PV K
Sbjct: 1274 MFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAK 1321


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  924 bits (2387), Expect = 0.0
 Identities = 510/1252 (40%), Positives = 732/1252 (58%), Gaps = 16/1252 (1%)
 Frame = -1

Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVN 4282
            ID+N+D F +++ ++ S   +  ++  A+++LN++P S+  LK  ++YG  ++T+  V +
Sbjct: 141  IDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNKTLTVQDVTS 200

Query: 4281 ALKSKERELKHC-NIGKSSERVMHA--RGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXX 4111
            + KS EREL    ++ K    V++   RGRP                             
Sbjct: 201  SAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTKVP----- 255

Query: 4110 XXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXXX 3931
                   C+ C + GH  KDC       +    + S G+  GE  V+T+           
Sbjct: 256  -------CWYCKKEGHVKKDC------YSRKKKMESEGQ--GEAGVITEKLVFSEALSVN 300

Query: 3930 XXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGN 3751
                     +DSGC+ HM+  R+ F +++E  +  + L ++      G G I +    G 
Sbjct: 301  EQMVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGT 360

Query: 3750 VFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHA 3571
            +  L+NV++VP L  NL+S   L+ +G   + G+G ++  K +    +    N LY+   
Sbjct: 361  IKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDG 420

Query: 3570 ESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGK 3391
             +V+  + C       KT+LWH RLGHMS   L++L   G+  + +++ + FC+ CV+GK
Sbjct: 421  STVMSEL-CNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGK 479

Query: 3390 QHHVQFPISSVPNMSKCTS--VLEYLHADVWGHSSV-PSHGGNRYFLSVIDDYSRKVWTF 3220
               V F      N+ K TS   L Y+HAD+WG  +V PS  G +YFLS+IDD +RKVW +
Sbjct: 480  SKKVSF------NVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLY 533

Query: 3219 LLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPY 3040
             LK+K +  D+F +WK+L+ENQ  KK+K LRTDNGLEFCN   D  C ++GI+RH+T  Y
Sbjct: 534  FLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTY 593

Query: 3039 TPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHV 2860
            TPQQNGV ERMNRT++EKVRCL    G+ + FW EA  TA YL+NRSP+  +    PE +
Sbjct: 594  TPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEM 653

Query: 2859 FSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVV 2680
            +  + P   +L+ FG  A+VHQ   KL+PR+ K  FLGYP G KGY++W   +   K V+
Sbjct: 654  WLNRKPGYKHLRKFGSIAYVHQDQGKLKPRALKGFFLGYPAGTKGYKVW--LLEEEKCVI 711

Query: 2679 SRDVIFNESEF--PCLTASVSTSN-SKSDIAPSEVEQSPDIAPSE----VEQLPEMDPLN 2521
            SR+V+F ES            T N ++ +   SEVEQ+     S     ++   + +P+ 
Sbjct: 712  SRNVVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPIT 771

Query: 2520 DVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQ 2341
            +         G  + D E  +E   +T       G + Y+L RDR RR + PP +F E  
Sbjct: 772  E---------GEQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEES 822

Query: 2340 MSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISV 2161
               FA  V E+    EP SY+EA++S++  +W  A   EM+SL  N TW LV KP    +
Sbjct: 823  SVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKI 882

Query: 2160 VDCKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQ 1990
            + C+WLFK+K      E TRFKARLVAKG+TQ+EG+DY EIFAPVVK  ++RI+++LV  
Sbjct: 883  IGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVD 942

Query: 1989 FNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIR 1810
             + EL+QMDV T FLHGDL++ +YM+QPEGFV   + N VC LKK+LYGLKQSPRQWN R
Sbjct: 943  KDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKR 1002

Query: 1809 FDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNF 1630
            FD+ M S +F RS +D C+Y K V     I+LL+YVDDML+       I  V+  L   F
Sbjct: 1003 FDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEF 1062

Query: 1629 KMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSK 1450
            +MKD+G A +ILG++I R+RK   L L+Q  Y+ K+L +F+MS AK  N P+ +HF L+ 
Sbjct: 1063 EMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLA- 1121

Query: 1449 EQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKW 1270
              + + + E      VPYS+A+GS+MY M+ TRPD+AY + ++SRYMS PG  HWEA+KW
Sbjct: 1122 --AVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKW 1179

Query: 1269 LLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQL 1090
            ++RYLK   ++ L F+K  D   + GY DSN A D D R+S + YVFT+ G+ +SWK+ L
Sbjct: 1180 VMRYLKGAQDLNLVFTKEKD-FTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASL 1238

Query: 1089 QGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHD 910
            Q +VA+S           A KEA+W+KGLL ++        ++ DSQSAI L KN V+H+
Sbjct: 1239 QPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHE 1298

Query: 909  RTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKIL 754
            RTKHI+VRF++IRD+V+ G V   KIHT  NP D  TKC+PV K  S   +L
Sbjct: 1299 RTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVL 1350


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  912 bits (2358), Expect = 0.0
 Identities = 505/1242 (40%), Positives = 735/1242 (59%), Gaps = 7/1242 (0%)
 Frame = -1

Query: 4455 ENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNAL 4276
            E+++    LL ++++   K  D+ +A++LL ++P S+ +   +   G+D+++L+ V +AL
Sbjct: 117  EHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSAL 176

Query: 4275 KSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXX 4096
             S  REL+H   G S++                     +                     
Sbjct: 177  HS--RELRHKANGTSTD------------IQPSGLFTSSRKGRKNGGKKNKPMSKGAKPD 222

Query: 4095 XKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXXXXXXXX 3916
              C  C E GH+  DC        + +  A+  E        T+  +             
Sbjct: 223  DVCNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEED------TNSEEDIALVADEHTHHS 276

Query: 3915 XXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNVFTLK 3736
                +DSG S+H+ P R  F+ YE+V  G +S+AN   C V+G G I ++   G+  TL 
Sbjct: 277  DVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLN 336

Query: 3735 NVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHAESVLD 3556
             VRHVP +  NL+S + L+  G       GV+++ KGS ++ K   +  LY     +V  
Sbjct: 337  EVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTG 396

Query: 3555 NVNCVNSV--QDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGKQHH 3382
            + +  +S   Q D T LWH RLGHM  +G++IL K  +    K+ S+ FC+ CV GK H 
Sbjct: 397  SAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHR 456

Query: 3381 VQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFLLKNKS 3202
             +FP +    + +    L+Y+H+D WG   V S GG R+F+S+IDDYSR  W +++K+KS
Sbjct: 457  NKFPKA----IHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKS 512

Query: 3201 DVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTPQQNG 3022
            +   +F++WK L+ENQTGKKIK LRTDNGLEFC    D  C   GI RH+TV  TPQQNG
Sbjct: 513  EAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNG 572

Query: 3021 VTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFSGKLP 2842
            V ERMN+TLLE+ RC+    GL +RFW EA+ TA YL+NR P   +Q K P  ++SGK  
Sbjct: 573  VAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAA 632

Query: 2841 DLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVSRDVIF 2662
            D SNLK FGC A+ H    KLEPR++K VF+GY +GVKG+R+W  +    +V++SR+V+F
Sbjct: 633  DYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMSRNVVF 690

Query: 2661 NESEFPCLTASVS-TSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAENDYELGV 2485
            +ES  P L   V  T+ S++     +VE       S++++  E D   +   E D     
Sbjct: 691  DES--PLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEED--QEPQTETDIP--- 743

Query: 2484 NNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRV-VKPPEKFNEFQMSFFAFNVFES 2308
                         E++  D+     +  + +DR RRV V+PP ++    M  +A  V E 
Sbjct: 744  -------------ESMPSDI-----HQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEE 785

Query: 2307 LDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCKWLFKVKH 2128
            +D SEP++Y+EAI S +S +W  AM  EM SLH N+TW LV +P    ++ CKW+FK K 
Sbjct: 786  VDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKE 845

Query: 2127 ---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWELKQMDVT 1957
                AE  ++KAR+VA+GF Q+EG+DY EIF+PVV+ T++R++LA+VA  N EL+Q+DV 
Sbjct: 846  GISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVK 905

Query: 1956 TAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKCMQSLKFK 1777
            TAFLHG+L++ IYM QP+GF      NHVC LKK+LYGLKQSPRQW  RFD  M  L + 
Sbjct: 906  TAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYT 965

Query: 1776 RSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKDLGDARKI 1597
            RS YD C+Y+  ++    I+L++YVDDML+ +     I+ ++  L   F+MKDLG ARKI
Sbjct: 966  RSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKI 1025

Query: 1596 LGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSPKNDSEMN 1417
            LGM I+R+R++  L L+Q SY++K+L++F MS++KP++ P A++  L+   +P+++ E  
Sbjct: 1026 LGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKE 1085

Query: 1416 AMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRYLKSTMNV 1237
             M +VPY++A+GS+MY M+CTRPD+A+ VS++SR+M  PG  HW+A+K + RYL+ T +V
Sbjct: 1086 YMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDV 1145

Query: 1236 GLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIVALSXXXX 1057
            GL +   +  L + GY DS+ A D D R+S T YVFTL GS +SWK+ LQ  V LS    
Sbjct: 1146 GLIYGGDTQCL-VTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEA 1204

Query: 1056 XXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKHIEVRFHF 877
                   A KE IWLKGL+S++      A V+ DS SAI L K+ V H+RTKHI+VR+HF
Sbjct: 1205 EYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHF 1264

Query: 876  IRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKILN 751
            +R    +  +K +K+ T  NPADM TK +P  K      +LN
Sbjct: 1265 LR---SEKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLN 1303


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  910 bits (2352), Expect = 0.0
 Identities = 504/1240 (40%), Positives = 726/1240 (58%), Gaps = 14/1240 (1%)
 Frame = -1

Query: 4455 ENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNAL 4276
            +++  F +++ D++S   K  ++   ++LL ++P SY + +  I Y RD++TL  V +AL
Sbjct: 28   DHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDAL 87

Query: 4275 KSKERELKHCNIGKSSERV--MHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXX 4102
             +KE+  K      S+ +   +  RGR             +                   
Sbjct: 88   HAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYKS--- 144

Query: 4101 XXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNG--ENFGEMYVVTDV-SDMPXXXXXX 3931
                C  C   GH   +C                G  E  G+  VVTD  SD        
Sbjct: 145  ----CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYA 200

Query: 3930 XXXXXXXXXV-DSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASG 3754
                     + D+ C++HM P R+ F+ YE V+ G V + ++  C V G+G + +K   G
Sbjct: 201  GCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDG 260

Query: 3753 NVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAE-KQNNLYIC 3577
             + TL +VRH+P+L  +L+S   L+  G +   G G++K+ KGSLVV KA+ K  NLY  
Sbjct: 261  CIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHL 320

Query: 3576 HAESVLDNVNCVNSV--QDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSC 3403
               ++L NV  V+      D T+LWH RLGHMS  GL  L K G+     +  + FC+ C
Sbjct: 321  RGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHC 380

Query: 3402 VLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWT 3223
            + GK   V+F  S+         +L+Y+H+D+WG +   S GG RY ++++DDYSRKVW 
Sbjct: 381  IFGKHKRVKFNTST----HTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWP 436

Query: 3222 FLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVP 3043
            + LK+K    D F++WKT++E QT +K+K LRTDNG+E C+K+    C   GI RH TVP
Sbjct: 437  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVP 496

Query: 3042 YTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEH 2863
            +TPQQNGV ERMNRT++ K RC+     L K+FW EA+ TA YL+NRSPS  +  K P  
Sbjct: 497  HTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 556

Query: 2862 VFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVV 2683
            V+SG   + S+L+VFGC A+ H    KLEPR  KC+FLGY  GVKGY+LW       KVV
Sbjct: 557  VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETK--KVV 614

Query: 2682 VSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAEN 2503
            +SR+V+F+E        S+   +  S   P E ++   +   +VE L     ++  HA  
Sbjct: 615  ISRNVVFHE--------SIMLHDKPSTNVPVESQEKVSV---QVEHL-----ISSGHAPE 658

Query: 2502 DYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKF-NEFQMSFFA 2326
              ++ +N            E     +   +    + +DR +R  KPP ++  E  +  +A
Sbjct: 659  KEDVAINQDAPV------IEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYA 712

Query: 2325 FNVFESLD-NSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCK 2149
             +V E ++ N+EP++Y +AI S++   W+ AM  EM SL  N +W L   P     + CK
Sbjct: 713  LSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCK 772

Query: 2148 WLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 1978
            W+FK K     ++  R+KARLVAKG++Q  GID+ ++F+PVVK +++R +L++VA  ++E
Sbjct: 773  WIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYE 832

Query: 1977 LKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKC 1798
            L+QMDV TAFLHG+L++ IYM+QPEGFV     N VC LKK+LYGLKQSPRQW  RFD  
Sbjct: 833  LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 892

Query: 1797 MQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKD 1618
            M S KF+RS YD C+Y K VD    I+LL+YVDDML+ +     I  ++  L   F+MKD
Sbjct: 893  MLSQKFRRSNYDSCVYLKVVDGSA-IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKD 951

Query: 1617 LGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSP 1438
            LG A+KILGM I R R    L L+Q  Y+EK+L +F+M +AK V+  LA+HF LS +  P
Sbjct: 952  LGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCP 1011

Query: 1437 KNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRY 1258
            ++  ++  M +VPYS+A+ S+MY M+C+RPD+++ +S++SRYM+NPG  HW+A++W+ RY
Sbjct: 1012 QSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRY 1071

Query: 1257 LKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIV 1078
            L+ T +  L F + SDG  LVGYVDS+ A D D R+S T YVFT+ G  +SWK+ LQ  V
Sbjct: 1072 LRGTSSACLQFGRSSDG--LVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATV 1129

Query: 1077 ALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKH 898
            ALS           A KE IWL+GL +E+C +     +F DSQSAI L K+ +FH+RTKH
Sbjct: 1130 ALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKH 1189

Query: 897  IEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            I++R+HFIR ++ +G VK  KI T  NP DM TK +P  K
Sbjct: 1190 IDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATK 1229


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  901 bits (2329), Expect = 0.0
 Identities = 496/1222 (40%), Positives = 716/1222 (58%), Gaps = 27/1222 (2%)
 Frame = -1

Query: 4440 FTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALKSKER 4261
            F K++ D+ S   K  D+   ++LL ++P SY + +  I   RD +TL  V +AL++KE+
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181

Query: 4260 -ELKHCNIGKSSER--VMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXXXK 4090
             ++   N G SS +   +H RGR                                     
Sbjct: 182  MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR----------GRSKSKPPGNKKF 231

Query: 4089 CYSCGEPGHYAKDCSXXXXXXNEH--------ANVASNGENFGEMYVVTDVSDMPXXXXX 3934
            C  C    H   +C        ++        A+ A++ ++ G+  VV            
Sbjct: 232  CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVV----------FA 281

Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHG-YVSLANEKKCNVLGMGEICLKFAS 3757
                      +DS CSFH+   RN FS+Y+ V+ G  V + ++  C ++G+G + +K   
Sbjct: 282  GCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDD 341

Query: 3756 GNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQN-NLYI 3580
            G   TLKNVR++P +  NL+S + L+  G +     GV+K+ KGSLV  K +  +  LY+
Sbjct: 342  GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYV 401

Query: 3579 CHAESVLDNVNCVNSVQDD---KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCD 3409
                ++  + +   ++ +D   KT+LWH RLGHMS+ G+  L K  +      S + FC+
Sbjct: 402  LRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCE 461

Query: 3408 SCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKV 3229
             C+ GK   VQF  S    +      L+Y+HAD+WG S  PS GG RY L++IDDYSRKV
Sbjct: 462  HCIFGKHKRVQFNTS----VHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKV 517

Query: 3228 WTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKT 3049
            W + LK+K D    F+ WK +IE QT +K+K LRTDNG EFC+   +D C + GI RH T
Sbjct: 518  WPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHT 577

Query: 3048 VPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCP 2869
            +P+TPQQNGV ERMNRT++ + RC+     ++KRFW EA  TA YL+NRSPS+PL  K P
Sbjct: 578  IPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTP 637

Query: 2868 EHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFK 2689
              V+SG   D S LKVFGC A+ H    KLEPR+ KC+FLGY  GVKGY+LW+      K
Sbjct: 638  IEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG--K 695

Query: 2688 VVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHA 2509
              +SR V+FNE        SV  +NS     PSE     ++    + Q+  +D    V  
Sbjct: 696  TFMSRSVVFNE--------SVMFTNS----LPSEHVPEKELQRMHM-QVEHVDDDTGVQV 742

Query: 2508 ENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRD------RSRRVVKPPEK-FN 2350
            E  +E   +N+D      +  +  HDDV       QL  +      +S+R  KPP++   
Sbjct: 743  EPVHEQDDHNND------VADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE 796

Query: 2349 EFQMSFFAFNVFESLDN-SEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPD 2173
            E  +S++A +  E ++N  EP +Y+EA++  +S  W++AM  EM SL  N TW +VP P 
Sbjct: 797  ECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPK 856

Query: 2172 SISVVDCKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLA 2002
                + CKW+FK K     +E  ++KARLVA+G++Q  G+DY ++F+PVVK +++R  L+
Sbjct: 857  KKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLS 916

Query: 2001 LVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQ 1822
            +VA  + EL+Q+DV TAFLHG+L++ IYM QPEGF+      +VC LK++LYGLKQSPRQ
Sbjct: 917  IVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQ 976

Query: 1821 WNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCL 1642
            WN RFD  M S  FKRS YD C+Y K V+   PI+LL+YVDDML+ +     I  ++  L
Sbjct: 977  WNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLIAAKSKIEITKLKKLL 1035

Query: 1641 CDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHF 1462
               F MKDLG A+KILGM I R+RK   L L+Q +Y++K+L +F+M NAK V+ P+A HF
Sbjct: 1036 SSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHF 1095

Query: 1461 VLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWE 1282
             LS  Q P  D+E+  M +VPYS+A+GS+MY M+C+RPD++Y +S++SRYMSNPG  HW 
Sbjct: 1096 KLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWR 1155

Query: 1281 ALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISW 1102
            A++W+ RYL+ T    L F +   G  L+GYVDS+ A D D R+S T YVFT+    +SW
Sbjct: 1156 AVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSW 1213

Query: 1101 KSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNP 922
            ++ LQ +VALS           A KE IWLKGL +E+  ++    +  DS+SAI L K+ 
Sbjct: 1214 RATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQ 1273

Query: 921  VFHDRTKHIEVRFHFIRDIVDK 856
            +FH+RTKHI++++HF+RD++++
Sbjct: 1274 MFHERTKHIDIKYHFVRDVIEE 1295


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  886 bits (2289), Expect = 0.0
 Identities = 506/1255 (40%), Positives = 721/1255 (57%), Gaps = 21/1255 (1%)
 Frame = -1

Query: 4479 LDMSKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSIT 4300
            ++   D++++I  F   + +++  G K  D+ +AV+LL+++P  +   K  + + ++ IT
Sbjct: 86   MEEGDDLNDHICKFQNCIANLEKVGAKMDDEDTAVMLLHSLPPLFKHFKTTMIF-KELIT 144

Query: 4299 LDIVVNALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXX 4120
            L  V    KS  R  +  +   S  R ++ RG+                           
Sbjct: 145  LSKVCENPKSYIRLEREED--SSQARGLYVRGKERGRSRNRGGGFQGRGMSKSKGKGKGK 202

Query: 4119 XXXXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENF--------GEMYVVTD 3964
                      C+  G P H+ ++C        + +  +S   N         GE+  ++ 
Sbjct: 203  KDG-------CFIYGSPDHWKRNCKQWKEKKAQMSGESSQLANVVIGYNDEDGELLAIST 255

Query: 3963 VSDMPXXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGM 3784
             S  P                D+ C+FH    R+ F  Y+E     V + N+    ++G+
Sbjct: 256  SSGAPRHWTL-----------DTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGI 304

Query: 3783 GEICLKFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKA 3604
            G + ++   G V  L NVRH P L  NL+S + ++ VG   K   GV+K+ KG +V  K 
Sbjct: 305  GMVKIRMHDGIVRALGNVRHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKG 364

Query: 3603 EKQ-NNLYICHAESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLS 3427
              Q +N+Y     +V          ++DKT LW RRLGHMS +GL+ L K         +
Sbjct: 365  AIQPDNMYKLTGSTVEGGAGVCT--EEDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSA 422

Query: 3426 SVPFCDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVID 3247
            ++ FC  C LGKQ  V F +SS  N SK   VL+Y+H DVWG S+  S GG RYF+S ID
Sbjct: 423  ALEFCRYCTLGKQTRVSFNLSSSENKSK--GVLDYIHTDVWGPSATISKGGARYFVSFID 480

Query: 3246 DYSRKVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYG 3067
            D+SRKVW F +K K++V  +F++WK  + NQTG+KIK LR+DNG E+ +K    +C   G
Sbjct: 481  DFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEG 540

Query: 3066 IKRHKTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVP 2887
            I RH TV  +PQQNGV ERMNRTL+EK R +R   GL + FW EA + A YL+NRSPS  
Sbjct: 541  ITRHFTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRA 600

Query: 2886 LQGKCPEHVFSGKLPDLSNLKVFGCAAFVHQKGD---KLEPRSRKCVFLGYPEGVKGYRL 2716
            +  KC E V+SGK  D SNL+VFGC+A+ H   D   KLEP+S +C+F+G+ +GVKGY+L
Sbjct: 601  INFKCAEEVWSGKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKL 660

Query: 2715 WDRSVPGFKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSE--VEQSP----DIAPSE 2554
            WD  +   K V+SRDV+F+E E      ++S S +K  +A SE  VEQ+     ++A  E
Sbjct: 661  WD--IVNEKKVISRDVVFDERE------AISISLAKPSVADSEAQVEQNEQGNDEVAIEE 712

Query: 2553 VEQLPEMDPLNDVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRV 2374
             E   +  P      E   + G N+   +                 +    +  D+ +R 
Sbjct: 713  PEH--QQQPTVMAQVEQSPQRGQNSPIPQA--------------PESFKRSIALDKPKRN 756

Query: 2373 VKPPEKFNEFQMSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTW 2194
             KP ++F  F+          S+   +P +Y +AI+S  S  W+ AM  EM SLH N  W
Sbjct: 757  RKPIQRFG-FEPEEDVSRAL-SISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKNSVW 814

Query: 2193 MLVPKPDSISVVDCKWLFKVK---HEAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFT 2023
             LVPKP    +V CKW+F+ K   HE ++  +KARLVAKG++QKEG+DY EIF+PVVK T
Sbjct: 815  ELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHT 874

Query: 2022 TVRIMLALVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYG 1843
            ++R++L++ AQ++ E++QMDV TAFLHGDL++ IYM QPEGFV++   N VC LKK+LYG
Sbjct: 875  SIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYG 934

Query: 1842 LKQSPRQWNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSI 1663
            LKQSPRQW   FD  M  + + R  YD C+Y+   +    I LL+YVDDML+    +  I
Sbjct: 935  LKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQI 994

Query: 1662 KHVQNCLCDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVN 1483
            + ++  L   F MKDLG A+KILG+ I R+R    + L+Q  Y+ KIL +F+M+ AK V+
Sbjct: 995  QKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAEAKVVS 1054

Query: 1482 VPLASHFVLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSN 1303
            +PLA+HF LS EQ P +  E++ MK VPY++A+G +MY MICTRPD+A  +S++S+YMSN
Sbjct: 1055 IPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSN 1114

Query: 1302 PGMPHWEALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTL 1123
            PG  HWEA+KW+ +YLK+T  +G+ F +      + G+VDS+ A D D R+ST  YVFT 
Sbjct: 1115 PGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEACVAGFVDSDFAGDLDRRRSTAGYVFTC 1174

Query: 1122 CGSCISWKSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSA 943
             G  +SWK+ LQ + ALS           A KEAIWL GL  ++    +  +V  DSQSA
Sbjct: 1175 GGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSA 1234

Query: 942  IQLCKNPVFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            I L KN VFH RTKHI+ R+H IRD V+ G++  EK+HTD N AD  TK + V+K
Sbjct: 1235 IHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVEK 1289


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  881 bits (2276), Expect = 0.0
 Identities = 500/1251 (39%), Positives = 713/1251 (56%), Gaps = 14/1251 (1%)
 Frame = -1

Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEY--GRDSITLDIV 4288
            ++ NID F +++ D+++      D+  A++LL A+P++++ LK  ++Y  G+  +TLD V
Sbjct: 133  VEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSILTLDEV 192

Query: 4287 VNALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXX 4108
              A+ SKE EL   ++ KS +  + A G                                
Sbjct: 193  AAAIYSKELELG--SVKKSIK--VQAEG-------LYVKDKNENKGKGEQKGKGKGKKGK 241

Query: 4107 XXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSD--MPXXXXX 3934
                  C++CGE GH+   C        + + V   GE+ G    + + +   +      
Sbjct: 242  SKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVK-GESSGGKGNLAEAAGYYVSEALSS 300

Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASG 3754
                      +D+GCS+HM+  R  F  + E   G V + N+    V G+G I +K + G
Sbjct: 301  TEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDG 360

Query: 3753 NVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICH 3574
                L NVR++PD+  NLLS    E  G + +   G+++I  G+ V+    + + LY+ +
Sbjct: 361  LTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTGRRYDTLYLLN 420

Query: 3573 AESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLG 3394
             + V      V    DD T LWH+RL HMS K +EIL + G   K K+SS+  C+ C+ G
Sbjct: 421  WKPVASESLAVVKRADD-TVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYG 479

Query: 3393 KQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVP-SHGGNRYFLSVIDDYSRKVWTFL 3217
            K     F ++      K    LEY+H+D+WG   VP S G  +YF+S+IDD++RKVW + 
Sbjct: 480  KAKRKSFSLAHHDTKEK----LEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYF 535

Query: 3216 LKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYT 3037
            +K K +  ++F +W  L+ENQT +++K LRTDNGLEFCNKL D  C   GI RH+T  YT
Sbjct: 536  MKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYT 595

Query: 3036 PQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVF 2857
            PQQNGV ERMNRT++EKVR +    GL KRFW EA HT   L+N++PS  L  + P+  +
Sbjct: 596  PQQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKW 655

Query: 2856 SGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVS 2677
            SG  P  S L+ +GC AFVH    KLEPR++K V +GYP GVKGY++W   +   K VVS
Sbjct: 656  SGNPPVYSYLRRYGCVAFVHTDDGKLEPRAKKGVLIGYPVGVKGYKVW--ILDERKCVVS 713

Query: 2676 RDVIFNESEF--PCLTASVSTSNSKSDIAPS----EVEQSPDIAPSEVEQLPEMDPLNDV 2515
            R++IF E+      +    + S  + D   S    ++E   D+     +++    P  + 
Sbjct: 714  RNIIFQENAVYKDLMQRQENVSTEEDDQTGSYLEFDLEAERDVISGGDQEMVNTIPAPES 773

Query: 2514 HAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMS 2335
               +       N DE+            DV+    +Y L RDR +R ++ P +F++    
Sbjct: 774  PVVSTPTTQDTNDDEDS-----------DVNQSPLSYHLVRDRDKREIRAPRRFDDEDYY 822

Query: 2334 FFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVD 2155
              A    E  +  EP +YR+A    N  +W  AM  E++S   N TW +V +P++  ++ 
Sbjct: 823  AEALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIG 882

Query: 2154 CKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFN 1984
            C+W+FK K      E  RFKARLVAKG+ QKEGIDY EIFAPVVK  ++R++L++VAQ +
Sbjct: 883  CRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQED 942

Query: 1983 WELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFD 1804
             EL+Q+DV TAFLHG+L + IYM  PEG+      N VCLL KALYGLKQ+P+QWN +FD
Sbjct: 943  LELEQLDVKTAFLHGELKEKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFD 1002

Query: 1803 KCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKM 1624
              M+ + F +S YD C Y K +     ++LLIYVDD+L+ S   ++I  ++  L   F+M
Sbjct: 1003 NFMKEICFVKSAYDSCAYTKVLPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRFEM 1062

Query: 1623 KDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQ 1444
            KDLG A+KILGM I+R+R    L L+Q  Y+ KIL  ++M+ AKP   PL +HF      
Sbjct: 1063 KDLGAAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQAAT 1122

Query: 1443 SPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLL 1264
              K   + + MK VPYS+A+GS+MY M+ TRPD+AYPV I+SR+MS P   HW  +KW+L
Sbjct: 1123 EQKLIRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWVL 1182

Query: 1263 RYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQG 1084
            RY+K T+   L + K S    +VGY D++ A D D R+S T  VFTL G+ ISWKS LQ 
Sbjct: 1183 RYIKGTLKTRLCYKK-SSSFSIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQR 1241

Query: 1083 IVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRT 904
            +VA S           A KEAIWLKGLL +  +  K+  +F DSQSAI L KN V H+RT
Sbjct: 1242 VVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERT 1301

Query: 903  KHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKILN 751
            KHI+V++HFIR+I+  G V+  KI T+ NPAD+ TK L V K   FQ  LN
Sbjct: 1302 KHIDVKYHFIREIISDGTVEVLKISTEKNPADIFTKVLAVSK---FQAALN 1349


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  877 bits (2266), Expect = 0.0
 Identities = 495/1250 (39%), Positives = 720/1250 (57%), Gaps = 16/1250 (1%)
 Frame = -1

Query: 4479 LDMSKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSIT 4300
            L  S  +  +I VF +++ D+ S   +  D+   ++LL ++P SY + +  I   RD +T
Sbjct: 113  LHESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELT 172

Query: 4299 LDIVVNALKSKERE--LKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXX 4126
            L  V  AL+++E+   +       S    +  RGR                         
Sbjct: 173  LAEVYEALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRG 232

Query: 4125 XXXXXXXXXXXKCYSCGEPGHYAKDC----SXXXXXXNEHANVASNGENF--GEMYVVTD 3964
                        C  C +  H+ ++C    +      +  A+V ++ EN   G+  VV  
Sbjct: 233  KKF---------CKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVV-- 281

Query: 3963 VSDMPXXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKH-GYVSLANEKKCNVLG 3787
                                +D+ CSFH+   R+ FS+Y+ V++   V + ++    ++G
Sbjct: 282  --------FAGYVASHDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVG 333

Query: 3786 MGEICLKFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFK 3607
            +G + +K   G   TLK+VRH+P +  NL+S + L+  G +     GV+K+ KGSLV   
Sbjct: 334  IGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMI 393

Query: 3606 AEKQN-NLYICHAESVLDNVNCVNSVQDD--KTSLWHRRLGHMSNKGLEILEKNGMFGKD 3436
             +  + NLY+    ++  +V      +D+  KT+LWH RLGHMS  G+  L K  +    
Sbjct: 394  GDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGC 453

Query: 3435 KLSSVPFCDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLS 3256
               ++ FC+ CV GK   V+F  S    + +   +L+Y+HAD+WG S  PS GG RY L+
Sbjct: 454  TQGNMKFCEHCVFGKHKRVKFNTS----VHRTKGILDYVHADLWGPSRKPSLGGARYMLT 509

Query: 3255 VIDDYSRKVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCA 3076
            +IDDYSRK W + LK+K D    F++ K +IE QT K++K L TDNG EFC+   DD C 
Sbjct: 510  IIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCR 569

Query: 3075 KYGIKRHKTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSP 2896
            K GI RH T+PYTPQQNGV ERMNRT++ K RC+     ++KRFW EA +TA YL+NRSP
Sbjct: 570  KEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSP 629

Query: 2895 SVPLQGKCPEHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRL 2716
            S+PL  K P  ++SG   D S L+VFGC A+ H    KLEPR+ KC+FLGY  GVKGY+L
Sbjct: 630  SIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKL 689

Query: 2715 WDRSVPGFKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPE 2536
            W+      K  +SR+VIFN  EF     S+ T     D+ P   ++       +VE +  
Sbjct: 690  WNPETN--KTFMSRNVIFN--EFVMFNDSLPT-----DVIPGGSDEEQQYVSVQVEHV-- 738

Query: 2535 MDPLNDVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEK 2356
                      +D E  +  +D    ++ H  +V    D+  ++    R   R    P   
Sbjct: 739  ----------DDQETEIVGNDVNDTVQ-HSPSVLQPQDEPIAH----RRTKRSCGAPVRL 783

Query: 2355 FNEFQMSFFAFNVFESLDNS-EPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPK 2179
              E  M ++AF+  E ++N+ EP +Y EA+ S +  +W++A++ EM SL  N TW LV  
Sbjct: 784  IEECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHL 843

Query: 2178 PDSISVVDCKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIM 2008
            P     V CKW+FK K     +E  RFK RLVAKGF+Q  G+DY ++F+PVVK +++R  
Sbjct: 844  PKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTF 903

Query: 2007 LALVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSP 1828
             ++V   + EL+Q+DV T FLHG+L++ IYM QPEGF+     ++VC LK++LYGLKQSP
Sbjct: 904  FSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSP 963

Query: 1827 RQWNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQN 1648
            RQW  RFD  M S  FKRS +D C+Y K V+   PI+LL+YVDDML+ +   + I  ++ 
Sbjct: 964  RQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGS-PIYLLLYVDDMLIAAKSKEQITTLKK 1022

Query: 1647 CLCDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLAS 1468
             L   F MKDLG A+KILGM I R+R    L L+Q SY++K+L +F+M +AKPV+ P+A 
Sbjct: 1023 QLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAP 1082

Query: 1467 HFVLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPH 1288
            HF LS  Q    D ++  M +VPYS+A+GS+MY M+C+ PD+++ +S++SRYM+NPG  H
Sbjct: 1083 HFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEH 1142

Query: 1287 WEALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCI 1108
            W+A++W+ RYL+ T +  L F +   G  LVGYVDS+ A D D R+S T YVFT+    +
Sbjct: 1143 WKAVQWIFRYLRGTADACLKFGRIDKG--LVGYVDSDFAADLDKRRSLTGYVFTIGSCAV 1200

Query: 1107 SWKSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCK 928
            SWK+ LQ +VA S           A KE++WLKGL +E+C +D    +F DSQSAI L K
Sbjct: 1201 SWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTK 1260

Query: 927  NPVFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            + +FH+RTKHI++++H++RDIV +G +K  KI    NPADM TK +PV K
Sbjct: 1261 DQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAK 1310


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  872 bits (2253), Expect = 0.0
 Identities = 500/1240 (40%), Positives = 706/1240 (56%), Gaps = 12/1240 (0%)
 Frame = -1

Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYG--RDSITLDIV 4288
            I+ NID F +++ D+++T     D+  A++LL ++P+ ++ L+  ++YG  R +++LD V
Sbjct: 133  IEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEV 192

Query: 4287 VNALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXX 4108
            V A+ SKE EL     G + + +   +G+                               
Sbjct: 193  VAAIYSKELEL-----GSNKKSI---KGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSK 244

Query: 4107 XXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXXXX 3928
                  C+ CGE  + + + S             +NG    E    TD+           
Sbjct: 245  SRSKKGCWICGESSNGSSNYSE------------ANGLYVSEALSSTDIH---------- 282

Query: 3927 XXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNV 3748
                    +D+GCS+HM+  R  F +  E   G V + N+    V G+G I +K  +G V
Sbjct: 283  --LEDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMV 340

Query: 3747 FTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHAE 3568
              L NVR++P++  NLLS    E  G   K   G + I+ G  V+    +   LY+    
Sbjct: 341  VRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWR 400

Query: 3567 SVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGKQ 3388
             V +    V   QDD T LWHRRLGHMS K +++L K G+  K K+S +  C+ C+ GK 
Sbjct: 401  PVTEESLSVVKRQDD-TILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKA 459

Query: 3387 HHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVP-SHGGNRYFLSVIDDYSRKVWTFLLK 3211
              + F ++      K    LEY+H+D+WG  SVP S G  +YF+S IDDY+RKV  + LK
Sbjct: 460  KRIGFNLAQHDTREK----LEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLK 515

Query: 3210 NKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTPQ 3031
             K +  D+F +W  L+ENQT K+IK LRTDNGLEFCN+  D+ C++ GI  H+T  YTPQ
Sbjct: 516  TKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQ 575

Query: 3030 QNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFSG 2851
            QNGV ERMNRTL+EKVR +    GL K+FW EA HT   L+N++PS  L  + P+  +SG
Sbjct: 576  QNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSG 635

Query: 2850 KLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVSRD 2671
            K P  S L+ FGC AFVH    KL PR++K + +GYP GVKGY++W   +   K VVSR+
Sbjct: 636  KSPIYSYLRRFGCIAFVHTDDGKLNPRAKKGILVGYPIGVKGYKIW--LLEEKKCVVSRN 693

Query: 2670 VIFNESEFPCLTASVSTSNSKSDIAPSEVEQSP------DIAPSEVEQLPEMDPLNDVHA 2509
            VIF E+      AS        D    E E  P      D+   EV      DP+ +  +
Sbjct: 694  VIFQEN------ASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQS 747

Query: 2508 ENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMSFF 2329
              +          EG   ++ ET   D+     +YQL RDR RR ++ P +F++      
Sbjct: 748  PFNPSPATTQTYSEG---VNSET---DIIQSPLSYQLVRDRDRRTIRAPVRFDDEDYLAE 801

Query: 2328 AFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCK 2149
            A    E     EP  Y EA +S N  +W  AM  EM S   N TW +V +P    V+  +
Sbjct: 802  ALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSR 861

Query: 2148 WLFKVK---HEAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 1978
            W++K K      E  RFKARLVAKG+ Q++GIDY EIFAPVVK  ++RI++++VAQ + E
Sbjct: 862  WIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLE 921

Query: 1977 LKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKC 1798
            L+Q+DV TAFLHG+L + IYM  PEG+ +    + VCLL K+LYGLKQ+P+QWN +F+  
Sbjct: 922  LEQLDVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAY 981

Query: 1797 MQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKD 1618
            M  + F RS+YD C Y K++     ++LL+YVDDML+ +   + I  ++  L   F MKD
Sbjct: 982  MSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKD 1041

Query: 1617 LGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSP 1438
            LG A++ILGM I+RNR+++TL L+Q  Y+ KIL  ++M+ +K V  PL +H  +      
Sbjct: 1042 LGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVE 1101

Query: 1437 KNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRY 1258
            K + + + MK +PYS+A+GS+MY MI TRPD+AYPV I+SRYMS P   HW  +KW+LRY
Sbjct: 1102 KQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRY 1161

Query: 1257 LKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIV 1078
            +K ++   L + + SD  K+VGY D+++A  +D R+S T  VFTL GS ISWKS  Q +V
Sbjct: 1162 IKGSLGTKLQYKRSSD-FKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVV 1220

Query: 1077 ALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKH 898
            ALS           A KEA+W+KGLL E  +  K+  +F DSQSAI L KN V H+RTKH
Sbjct: 1221 ALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKH 1280

Query: 897  IEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            I+VR+ +IRDI+  G     KI T+ NPAD+ TK +PV K
Sbjct: 1281 IDVRYQYIRDIIANGDGDVVKIDTEKNPADIFTKIVPVNK 1320


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
            gi|7268932|emb|CAB79135.1| putative transposable element
            [Arabidopsis thaliana]
          Length = 1308

 Score =  864 bits (2233), Expect = 0.0
 Identities = 491/1241 (39%), Positives = 703/1241 (56%), Gaps = 13/1241 (1%)
 Frame = -1

Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVN 4282
            ID+N D F +++ ++ S   +  ++  A+++LN++P SY  LK  ++YG  ++++  VV+
Sbjct: 143  IDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSYIQLKHTLKYGNKTLSVQDVVS 202

Query: 4281 ALKSKERELKH----CNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXX 4114
            + KS EREL           S+      RGRP                            
Sbjct: 203  SAKSLERELSEQKETIRAPASTALYTAERGRPQTKNTQGQGKGRGRSNSKSRLT------ 256

Query: 4113 XXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXX 3934
                    C+ C + GH  KDC                 E  G+  V+T+          
Sbjct: 257  --------CWFCKKEGHVKKDCYAGKRKL--------ENEGQGKAGVITEKLVYSEALSM 300

Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASG 3754
                      +DSGC++HM+   + FS + E +   + L ++      G G + +    G
Sbjct: 301  YDQEAKDKWVIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTVESKGSGTVKVNTHGG 360

Query: 3753 NVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICH 3574
            ++  LKNVR VP+L  NL+S   L+ +G + + G G ++  K +         N LY+  
Sbjct: 361  SIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEGGDGKVRFYKENKTALCGNLVNGLYVLD 420

Query: 3573 AESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLG 3394
              +V+ N NC     ++KT LWH RLGHMS   ++IL + G+  K  +  + FC++CV+G
Sbjct: 421  GHTVV-NENCNVEGSNEKTELWHCRLGHMSLNNMKILAEKGLLEKKDIKELSFCENCVMG 479

Query: 3393 KQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFLL 3214
            K   + F +           VL Y+HAD+WG          +YFLS+IDD SRKVW   L
Sbjct: 480  KSKKLSFNVGK----HITDEVLGYIHADLWG---------KQYFLSIIDDKSRKVWLMFL 526

Query: 3213 KNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTP 3034
            K K +  + F +WK L+ENQ  KK+K LRTDNGLEFCN   D+ C + GI+RH+T  YTP
Sbjct: 527  KTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNLKFDEFCKQNGIERHRTCTYTP 586

Query: 3033 QQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFS 2854
            QQNGV +RMNRTL+EKVRCL    GL + FW EA  TA YLVNRSP+  +    PE ++ 
Sbjct: 587  QQNGVAKRMNRTLMEKVRCLLNESGLEEVFWAEAAATAAYLVNRSPASAVDHNVPEELWL 646

Query: 2853 GKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVSR 2674
             K P   +L+ FGC A+VH    KL+PR+ K VFLGYP+G KGY++W   +   K V+SR
Sbjct: 647  DKKPGYKHLRRFGCIAYVHLDQGKLKPRALKGVFLGYPQGTKGYKVW--LLDEEKCVISR 704

Query: 2673 DVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAENDYE 2494
            +++FNE++               DI  S  +   DI  S++E   E       H E    
Sbjct: 705  NIVFNENQV------------YKDIRESSEQSVKDI--SDLEGYNEFQVSVKEHGECSKT 750

Query: 2493 LGVN----NHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMSFFA 2326
             GV     + + +    +  E +   +D   SNYQ  RDR RR   PP+K  ++     A
Sbjct: 751  GGVTIEEIDQESDSENSVTQEPLIASID--LSNYQSARDRERRAPNPPQKLADYTHFALA 808

Query: 2325 FNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCKW 2146
              + E +++ EP  Y +A K ++ ++W   MK E++SL  N TW +V  P    V+ C+W
Sbjct: 809  LVMAEEIESEEPQCYHDAKKDKHWIKWNGGMKEEIDSLLKNGTWDIVEWPKEQKVISCRW 868

Query: 2145 LFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWEL 1975
            LFK+K      E+ R+KARLVA+GFTQ++GIDY E+FAPVVK  ++RI+++ V + + EL
Sbjct: 869  LFKLKPGIPGVEAQRYKARLVARGFTQQKGIDYEEVFAPVVKHISIRILMSAVVKDDMEL 928

Query: 1974 KQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKCM 1795
            +QMDV T FLHG+LD+ +YM+QPEGF  +   + VCLLKK+LYGLKQ+PRQWN +F   M
Sbjct: 929  EQMDVKTTFLHGELDQVLYMEQPEGFEVNPEKDQVCLLKKSLYGLKQAPRQWNKKFHAFM 988

Query: 1794 QSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKDL 1615
             SL+F RS +D C+Y K+V+    ++LL+YVDDMLL +     I  ++  L   F+MKD+
Sbjct: 989  LSLQFARSEHDSCVYVKEVNPGEFVYLLLYVDDMLLAAKSKSEISKLKEALSLKFEMKDM 1048

Query: 1614 GDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSK--EQS 1441
            G A +ILG++I+RNRK+ TL L+Q  YV+K++ +F M++AK V+ P+ +HF L+   ++ 
Sbjct: 1049 GAASRILGIDIIRNRKEGTLRLSQTRYVDKVIQRFRMADAKVVSTPMGAHFKLTSLIDEI 1108

Query: 1440 PKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLR 1261
               D E+     VPYS+A+GSVMY MI T PD+AY + ++SR+MS PG            
Sbjct: 1109 GSVDPEV-----VPYSSAVGSVMYAMIGTIPDVAYAMGLVSRFMSRPGA----------- 1152

Query: 1260 YLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGI 1081
                              L++ GY DS++A D D R+S + YVFT+ G+ +SWKS LQ +
Sbjct: 1153 -----------------NLEVQGYCDSDHAADLDKRRSISGYVFTVGGNTVSWKSSLQHV 1195

Query: 1080 VALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTK 901
            VALS           A KEAIW++GLL ++    K A V+ DSQSAI L KN  FHDRTK
Sbjct: 1196 VALSSTQAEFIALTEAVKEAIWIRGLLEDMGLQPKPATVWCDSQSAICLSKNNAFHDRTK 1255

Query: 900  HIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            H+EV+F+FIRDI++ G VK  KIHT VNPADM TKC+PVKK
Sbjct: 1256 HVEVKFYFIRDIIEAGEVKVRKIHTSVNPADMLTKCIPVKK 1296


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  864 bits (2232), Expect = 0.0
 Identities = 498/1255 (39%), Positives = 717/1255 (57%), Gaps = 19/1255 (1%)
 Frame = -1

Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVN 4282
            ++EN++ F KL+ D+++      D+  A+VLL ++P+ ++ LK  ++Y + ++ L+ + +
Sbjct: 138  MEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKTTLHLEEITS 197

Query: 4281 ALKSKERELKHCNI---GKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXX 4111
            A++SK  EL          S    +  RGR                              
Sbjct: 198  AIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKNKSRSKSKGAGKT------- 250

Query: 4110 XXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDM--PXXXX 3937
                   C+ CG+ GH+ K C       N+  + +  GE       VTD + +       
Sbjct: 251  -------CWICGKEGHFKKQC-YVWKERNKQGSTSERGEASTVTARVTDAAALVVSRALL 302

Query: 3936 XXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFAS 3757
                       +D+GCSFHM+  ++   +++E   G V + N+    V G+G++ +K   
Sbjct: 303  GFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNED 362

Query: 3756 GNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYIC 3577
            G+   L +VR++P++  NL+S   LED G   +  KG++ I K  L V   +K++ LY  
Sbjct: 363  GSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFL 422

Query: 3576 HAESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVL 3397
               ++    N ++  + D+TSLWH RLGH+  KGL++L   G   K+ + S         
Sbjct: 423  QGTTLAGEANVIDK-EKDETSLWHSRLGHIGAKGLQVLVSKGHLDKNIMIS--------F 473

Query: 3396 GKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVP-SHGGNRYFLSVIDDYSRKVWTF 3220
            G   HV                L+Y+H+D+WG ++VP S G  +YF++ IDD++R+ W +
Sbjct: 474  GAAKHVT------------KDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIY 521

Query: 3219 LLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPY 3040
             ++ K +   +F +WKT IENQ  KK+K L TDNGLEFCN+  D  C K G+ RH+T  Y
Sbjct: 522  FIRTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAY 581

Query: 3039 TPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHV 2860
            TPQQNGV ERMNRT++ KVRC+    GL K+FW EA  TA +L+N+SPS  ++   PE  
Sbjct: 582  TPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEK 641

Query: 2859 FSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVV 2680
            ++G  PD   LK FG  A++H    KL PR++K +FLGYP+GVK +++W   +   K VV
Sbjct: 642  WTGHPPDYKILKKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVW--LLEDRKCVV 699

Query: 2679 SRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAEND 2500
            SRD++F E++            S+ D   +EVE++      E++ L   D       EN 
Sbjct: 700  SRDIVFQENQM--YKELQKNDMSEEDKQLTEVERTL----IELKNLSADD-------ENQ 746

Query: 2499 YELGVNNHDEEGLL------EIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQM 2338
             E G N++ E+         +   E    D DD   NY L RDR RR ++ P++F E   
Sbjct: 747  SEGGDNSNQEQASTTRSASKDKQVEETDSD-DDCLENYLLARDRIRRQIRAPQRFVEEDD 805

Query: 2337 SF--FAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSIS 2164
            S   FA  + E  +  EP +Y EA++S    +W  A   EM+S+  N TW ++ KP+   
Sbjct: 806  SLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKR 865

Query: 2163 VVDCKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVA 1993
            V+ CKW+FK K      E  R+KARLVAKGF+Q+EGIDY EIF+PVVK  ++R +L++V 
Sbjct: 866  VIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVV 925

Query: 1992 QFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNI 1813
            QF+ EL+Q+DV TAFLHG+LD+ I M QPEG+ D  +   VCLLKK+LYGLKQSPRQWN 
Sbjct: 926  QFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQ 985

Query: 1812 RFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDN 1633
            RFD  M +  ++RS Y+ C+Y + ++    I+LL+YVDDML+ S     I+ ++  L   
Sbjct: 986  RFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNRE 1045

Query: 1632 FKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVL- 1456
            F+MKDLG ARKILGM I RNR+Q  L L+Q  YV  +L  F M  +K    PL +HF L 
Sbjct: 1046 FEMKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLR 1105

Query: 1455 -SKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEA 1279
             + E++   D+E   MK VPY NAIGS+MY MI +RPD+AYPV ++SR+MS P   HW+A
Sbjct: 1106 AANEKTLARDAEY--MKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQA 1163

Query: 1278 LKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWK 1099
            +KW++RY+K T +  L F K  D  ++ GY DS+ A D D R+S T +VFT  G+ ISWK
Sbjct: 1164 VKWVMRYMKGTQDTCLRFKK-DDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWK 1222

Query: 1098 SQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPV 919
            S LQ +VALS           A KEAIWL+GL +E+        V  DSQSAI L KN V
Sbjct: 1223 SGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSV 1282

Query: 918  FHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKIL 754
             H+RTKHI+VR+HFIR+ +  G ++  KI T  NPAD+ TK +PV KL    K+L
Sbjct: 1283 HHERTKHIDVRYHFIREKIADGEIQVVKISTTWNPADIFTKTVPVSKLQEALKLL 1337


>emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]
          Length = 1261

 Score =  861 bits (2225), Expect = 0.0
 Identities = 471/1047 (44%), Positives = 648/1047 (61%), Gaps = 5/1047 (0%)
 Frame = -1

Query: 3900 DSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNVFTLKNVRHV 3721
            DSG SFH +P R +  NY     G V LA+    +V+G+G++ +   +G+V+ L+ VR++
Sbjct: 252  DSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRYI 311

Query: 3720 PDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHAESVLDNVNCV 3541
            PDL  NL+S   L+D G    +  G  K+ KG+ V+ + +K + LY+       D +   
Sbjct: 312  PDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTDTLYMTSCPR--DTIAVA 369

Query: 3540 NSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGKQHHVQF-PIS 3364
            ++  D  TSLWHRRLGHMS K +++L   G   + K      C+SC+LGKQ  V F    
Sbjct: 370  DASTD--TSLWHRRLGHMSEKWMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTG 427

Query: 3363 SVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFLLKNKSDVLDEF 3184
              P   K    LE +H D+WG S V S GG+RY+++ I+D SRKVW + LKNKSDV   F
Sbjct: 428  RTPKAEK----LELVHTDLWGPSPVASLGGSRYYITFINDSSRKVWVYFLKNKSDVFVTF 483

Query: 3183 QKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTPQQNGVTERMN 3004
            +KWK ++E +TG K+K LR+DNG E+ +    + C   GI+  KT+P TPQQNGV ERMN
Sbjct: 484  KKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCXAQGIRMEKTIPGTPQQNGVAERMN 543

Query: 3003 RTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFSGKLPDLSNLK 2824
            RTL E+ R +R+  GL K FW +A+ TA YL+NR PSVP++ + PE V+SGK    S+LK
Sbjct: 544  RTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLK 603

Query: 2823 VFGCAAFVHQKGD---KLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVSRDVIFNES 2653
            VFGC ++VH   D   KL+ +S+ C F+GY +   GYR WD      K++ SR+VIFNE 
Sbjct: 604  VFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQ--NRKIIRSRNVIFNEQ 661

Query: 2652 EFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAENDYELGVNNHD 2473
                  ++V++  ++ D   SE     ++  S V++  E D                   
Sbjct: 662  VMYKDRSTVTSDVTEIDQKKSEFVNLDELTESTVQKGGEEDK------------------ 703

Query: 2472 EEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMSFFAFNVFESLDNSE 2293
                     E V+  VD      ++   RS R  +PP++++         N     D  E
Sbjct: 704  ---------ENVNSQVDLSTPIVEVR--RSSRNTRPPQRYSP------VLNYLLLTDGGE 746

Query: 2292 PNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCKWLFKVKHEAE-S 2116
            P  Y EA++ ENS +W  AMK EM+SL  N+TW L   P     +  KW++++K+E + S
Sbjct: 747  PECYDEALQDENSSKWELAMKDEMDSLLGNQTWZLTELPVGKKALHNKWVYRIKNEHDGS 806

Query: 2115 TRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWELKQMDVTTAFLHGD 1936
             R+KARLV KGF QKEGIDYTEIF+PVVK +T+R++L +VA  N  L+Q+DV TAFLHGD
Sbjct: 807  KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGD 866

Query: 1935 LDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKCMQSLKFKRSVYDHC 1756
            L++ +YM QPEGF+     N VC L+K+LYGLKQ+PRQW  +FD  M  + FKR   DHC
Sbjct: 867  LEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHC 926

Query: 1755 LYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKDLGDARKILGMNIVR 1576
             YFK  D+   I LL+YVDDML+    ++ I +++  L   F MKDLG A++ILGM I+R
Sbjct: 927  CYFKSFDNSY-IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIR 985

Query: 1575 NRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSPKNDSEMNAMKKVPY 1396
            ++   TL L+Q  YV+K+L +F+M+ AKPV+ PL SHF LSKEQSPK + E + M KVPY
Sbjct: 986  DKANGTLKLSQSEYVKKVLXRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDXMSKVPY 1045

Query: 1395 SNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRYLKSTMNVGLHFSKC 1216
            ++AIGS+MY M+CTR DIA+ V ++SR+MS PG  HWEA+KW+LRYLK +++  L F+  
Sbjct: 1046 ASAIGSLMYAMVCTRLDIAHAVGVVSRFMSXPGKQHWEAVKWILRYLKGSLDTCLCFTGA 1105

Query: 1215 SDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIVALSXXXXXXXXXXX 1036
            S  LKL GYVD++ A D D+RKSTT +VFTL G+ ISW S LQ IV LS           
Sbjct: 1106 S--LKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATE 1163

Query: 1035 AFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKHIEVRFHFIRDIVDK 856
            A KE IWL G L E+    +  I+ SDSQSAI L KN  FH ++KHI+ ++HFIR +V+ 
Sbjct: 1164 AGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVED 1223

Query: 855  GIVKFEKIHTDVNPADMGTKCLPVKKL 775
             +V  EKI    NPADM TK + ++KL
Sbjct: 1224 KLVILEKICGSKNPADMLTKGVTIEKL 1250


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  857 bits (2215), Expect = 0.0
 Identities = 498/1241 (40%), Positives = 704/1241 (56%), Gaps = 16/1241 (1%)
 Frame = -1

Query: 4452 NIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALK 4273
            +++VF  L+  + + G K  ++  A++LLN++P SY++L   I +G+ +I L  V +AL 
Sbjct: 121  HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALL 180

Query: 4272 SKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXXX 4093
              E+  K     +    +   RGR                                    
Sbjct: 181  LNEKMRKKPE-NQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRN-------- 231

Query: 4092 KCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMY-----VVTDVSDMPXXXXXXX 3928
             CY+C +PGH+ +DC        E +    N +N   M      VV  +++         
Sbjct: 232  -CYNCNQPGHFKRDCPNPRKGKGETSG-QKNDDNTAAMVQNNDNVVLFINE--EEECMHL 287

Query: 3927 XXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNV 3748
                    VD+  S H +P R+LF  Y     G V + N     + G+G+IC+K   G  
Sbjct: 288  SGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCT 347

Query: 3747 FTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHAE 3568
              LK+VRHVPDL  NL+S  AL+  G E  +     ++ KGSLV+ K   +  LY  +AE
Sbjct: 348  LVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAE 407

Query: 3567 SVLDNVNCVNSVQDD-KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGK 3391
                 +N   + QD+    LWH+R+GHMS KGL+IL K  +    K ++V  CD C+ GK
Sbjct: 408  ICQGELN---AAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGK 464

Query: 3390 QHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFLLK 3211
            QH V F  SS   ++    +L+ +++DV G   + S GGN+YF++ IDD SRK+W ++LK
Sbjct: 465  QHRVSFQTSSERKLN----ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 520

Query: 3210 NKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTPQ 3031
             K  V   FQK+  L+E +TG+K+K LR+DNG E+ ++  ++ C+ +GI+  KTVP TPQ
Sbjct: 521  TKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 580

Query: 3030 QNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFSG 2851
             NGV ERMNRT++EKVR +     L K FWGEA+ TA YL+NRSPSVPL  + PE V++ 
Sbjct: 581  HNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTN 640

Query: 2850 KLPDLSNLKVFGCAAFVH---QKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVV 2680
            K    S+LKVFGC AF H   ++  KL+ +S  C+F+GY +   GYRLWD      KV+ 
Sbjct: 641  KEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKK--KVIR 698

Query: 2679 SRDVIFNESEFPCLTASVSTSNSKSDIAPSEV-----EQSPDIAPSEVEQLPEMDPLNDV 2515
            SRDV+F ESE    TA+  +   K+ I P+ V       +P  A S  +++ E       
Sbjct: 699  SRDVVFRESEVR--TAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGE 756

Query: 2514 HAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMS 2335
              E   +L      +EG+ E+ + T  ++        +  R  SRR   P  ++      
Sbjct: 757  VIEQGEQL------DEGVEEVEHPTQGEEQHQPLRRSERPRVESRRY--PSTEYVLIS-- 806

Query: 2334 FFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVD 2155
                      D+ EP S +E +      + + AM+ EM SL  N T+ LV  P     + 
Sbjct: 807  ----------DDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLK 856

Query: 2154 CKWLFKVKHEAES--TRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNW 1981
            CKW+FK+K + +    R+KARLV KGF QK+GID+ EIF+PVVK T++R +L+L A  + 
Sbjct: 857  CKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDL 916

Query: 1980 ELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDK 1801
            E++Q+DV TAFLHGDL++ IYM+QPEGF  +   + VC L K+LYGLKQ+PRQW ++FD 
Sbjct: 917  EVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDS 976

Query: 1800 CMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMK 1621
             M+S  + ++  D C+YFK       I LL+YVDDML++      I  ++  L  +F MK
Sbjct: 977  FMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMK 1036

Query: 1620 DLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQS 1441
            DLG A++ILGM IVR R    L L+Q  Y+E++L +F+M NAKPV+ PLA H  LSK+  
Sbjct: 1037 DLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMC 1096

Query: 1440 PKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLR 1261
            P    E   M KVPYS+A+GS+MY M+CTRPDIA+ V ++SR++ NPG  HWEA+KW+LR
Sbjct: 1097 PTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILR 1156

Query: 1260 YLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGI 1081
            YL+ T    L F      LK  GY D++ A D DNRKS+T Y+FT  G  ISW+S+LQ  
Sbjct: 1157 YLRGTTGDCLCFGGSDPILK--GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214

Query: 1080 VALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTK 901
            VALS             KE IWLK  L E+    K  +V+ DSQSAI L KN ++H RTK
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTK 1274

Query: 900  HIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            HI+VR+H+IR++VD   +K  KI T+ NPADM TK +P  K
Sbjct: 1275 HIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNK 1315


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  848 bits (2192), Expect = 0.0
 Identities = 485/1253 (38%), Positives = 710/1253 (56%), Gaps = 20/1253 (1%)
 Frame = -1

Query: 4470 SKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGR--DSITL 4297
            S  + ++I+    L   + ++  K  ++  A +LL ++P SY+ L   I      D++  
Sbjct: 110  STSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHF 169

Query: 4296 DIVVNALKSKERELKH----CNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXX 4129
            D V  A+  +E   K+        K +E +   RGR                        
Sbjct: 170  DDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIK 229

Query: 4128 XXXXXXXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHAN-------VASNGENFGEMYVV 3970
                         CY CG  GH  K+C        +++        VAS  ++   +Y  
Sbjct: 230  -------------CYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSE 276

Query: 3969 TDVSDMPXXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVL 3790
               S                  +DSG ++HM+P R+ F +YE +  G V + N+    + 
Sbjct: 277  AATSS------EGERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIA 330

Query: 3789 GMGEICLKFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVF 3610
            G+G I LK   G V  ++ VRHV  L  NLLS   L+D+G +     G++K++KG+LVV 
Sbjct: 331  GVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVM 390

Query: 3609 KAEK-QNNLYICHAESVLD-NVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKD 3436
            KAEK  +NLY+   +++ + + +   + Q++ T +WH+RLGHMS +GL++L +  +    
Sbjct: 391  KAEKITSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGL 450

Query: 3435 KLSSVPFCDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLS 3256
            K  ++PFC+ CV+ KQH ++F  + V   SK   +L+ +H+DVW  S   S GG RYF+S
Sbjct: 451  KTVNLPFCEHCVISKQHRLKF--ARVTTRSK--HILDLIHSDVW-ESPKLSLGGARYFVS 505

Query: 3255 VIDDYSRKVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCA 3076
             IDDYSR++W + +K KSDV   F+ +K  IE +TGKKIK LRTDNG E+ +      C 
Sbjct: 506  FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCK 565

Query: 3075 KYGIKRHKTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSP 2896
            + GI R  TV +TPQQNGV ERMNRTLLE+ R +  T  ++K FW EA+ TA Y++NRSP
Sbjct: 566  QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSP 625

Query: 2895 SVPLQGKCPEHVFSGKLPDLSNLKVFGCAAFV---HQKGDKLEPRSRKCVFLGYPEGVKG 2725
            S  +  K P  ++ GK  D S+L VFGC  +V    Q+  KL+P+SRKC+FLGY + VKG
Sbjct: 626  STTIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKG 685

Query: 2724 YRLWDRSVPGFKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQ 2545
            YRLWD +    KVVVSRDV+F E+E      + ST    + +   E  +  D + +E   
Sbjct: 686  YRLWDPTAR--KVVVSRDVVFAENELQSEQKNDSTFKETAILQIEEKSKESDSSEAE--- 740

Query: 2544 LPEMDPLNDVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKP 2365
                                          +H E   DDV++G       R  +R+  KP
Sbjct: 741  -----------------------------SVHEEQEPDDVNNG------VRRSTRQTQKP 765

Query: 2364 PEKFNEFQMSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLV 2185
              + +       A+ +    +  EP+++ EA+   ++ +W+ A+  EM +L  NKTW LV
Sbjct: 766  SWQSDYVMTGHDAYCLI--AEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELV 823

Query: 2184 PKPDSISVVDCKWLFKVKHEA--ESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRI 2011
              P     +  KW++K+K +   +  R++ARLV KG+ QKEGID+ EIF+PVV+ TT+R+
Sbjct: 824  ELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRV 883

Query: 2010 MLALVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQS 1831
            +LA+ A  +  L+Q+DV TAFLHG+L++ IYM QPEGF +    N VC L K+LYGLKQ+
Sbjct: 884  VLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQA 943

Query: 1830 PRQWNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQ 1651
            PR W  RFD  + SL + R   DHC Y+K  D    I LL+YVDD+L++ P    ++ ++
Sbjct: 944  PRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDILVVGPNKDRVQELK 1003

Query: 1650 NCLCDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLA 1471
              L   F MKDLG A KILGM I R+RK   + L+Q +Y+ K+L +F+M + KP++ PL 
Sbjct: 1004 AQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLP 1063

Query: 1470 SHFVLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMP 1291
             +F LS   SP N++E   M +VPY++A+GS+MY MICTRPDIA  V ++SR+M++PG  
Sbjct: 1064 VNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKE 1123

Query: 1290 HWEALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSC 1111
            HW A+K ++RY+K T  V + F      L + GYVDS+ A D D RKSTT YVFTL G  
Sbjct: 1124 HWNAVKRIMRYIKGTSGVAVCFG--GSELTVRGYVDSDFAGDHDKRKSTTGYVFTLTGGA 1181

Query: 1110 ISWKSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLC 931
            +SW S+LQ +VALS           A KEAIW++ L+ E+ H  +   V+ DSQSA+ + 
Sbjct: 1182 VSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIA 1241

Query: 930  KNPVFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLV 772
            +NP FH RTKHI V++HF+R++V++G V  +KIHT+ N AD+ TK +   K V
Sbjct: 1242 RNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFV 1294


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  848 bits (2190), Expect = 0.0
 Identities = 496/1246 (39%), Positives = 694/1246 (55%), Gaps = 15/1246 (1%)
 Frame = -1

Query: 4470 SKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYG--RDSITL 4297
            S  + E+++    L   + S   K      A +LL ++P SY+ L   +      D +  
Sbjct: 111  STSVTEHLNTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVF 170

Query: 4296 DIVVNAL-----KSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXX 4132
            D V  A+     + K +E +  N+ + +E +   RGR                       
Sbjct: 171  DDVAAAVLEEESRRKNKEDRQVNL-QQAEALTVMRGRSTERGQSSGRGRSKSSKKNLT-- 227

Query: 4131 XXXXXXXXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDM 3952
                          CY+CG+ GH  KDC       N   NVAS  ++   +     ++  
Sbjct: 228  --------------CYNCGKKGHLKKDCWNLAQNSNPQGNVASTSDDGSALCCEASIA-- 271

Query: 3951 PXXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEIC 3772
                            +DSG ++HM+  +  F +YE +  G V   ++    ++G+G I 
Sbjct: 272  ----REGRKRFADIWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIK 327

Query: 3771 LKFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEK-Q 3595
            LK   G V T+++VRHV  L  NLLS   L++   + +  KGVMKI +G+LVV K EK  
Sbjct: 328  LKMYDGTVQTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIA 387

Query: 3594 NNLYICHAESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPF 3415
             NLY+   E++ +    V +   D T LWH++LGHMS++G++IL +  +       S+P 
Sbjct: 388  ANLYMLKGETLQEAEASVAACSPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPL 447

Query: 3414 CDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSR 3235
            C+ C+  KQH ++F  S+    S+   VLE +H+DVW  + VPS GG +YF+S IDDYSR
Sbjct: 448  CEHCITSKQHRLKFSTSN----SRGKVVLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSR 502

Query: 3234 KVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRH 3055
            + W + +K KSDV   F+ +K  +E  +GKKIK  RTDNG E+ ++  DD C K GIKR 
Sbjct: 503  RCWVYPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQ 562

Query: 3054 KTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGK 2875
             TV YTPQQNGV ERMNRTLLE+ R +    GL K FW EA++TA YLVNR+PS  ++ K
Sbjct: 563  FTVAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELK 622

Query: 2874 CPEHVFSGKLPDLSNLKVFGC---AAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRS 2704
             P  +++GK  D SNL +FG    A +  Q+  KL+P+SRKC FLGY +GVKGYRLWD +
Sbjct: 623  TPMEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLWDPT 682

Query: 2703 VPGFKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPL 2524
                KVV+SRDVIF E               + ++  S  ++ P+    +VE+  E D  
Sbjct: 683  --AHKVVISRDVIFVEDRL-----------QRGEVDDSTEKEKPETTQIQVEEEFEQD-- 727

Query: 2523 NDVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEF 2344
                                      E  H++ +  +S    TR   R   +P    +  
Sbjct: 728  ----------------------SSEAEPAHEEPEPESSGAPTTRQSDREKRRPTWHSDYV 765

Query: 2343 QMSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSIS 2164
                 A+ +    ++ EP++++EAI S +  +W  AM+ E+ +LH N TW LVP P    
Sbjct: 766  MEGNVAYCLL--TEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRK 823

Query: 2163 VVDCKWLFKVKHEAES--TRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQ 1990
             +  KW+FK+K   +    R++ARLV KG+ QKEGID+ EIF+PVV+ TTVR++LA+ A 
Sbjct: 824  PIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCAT 883

Query: 1989 FNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIR 1810
            FN  L+Q+DV TAFLHGDL++ IYM QPEGF D +N N VC L K+LYGLKQ+PR W  R
Sbjct: 884  FNLHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKR 943

Query: 1809 FDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNF 1630
            FD  +  L + R   D C YFK       + LL+YVDDML+  P    I  ++  L   F
Sbjct: 944  FDSFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREF 1003

Query: 1629 KMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSK 1450
            +MKDLG A KILGM I R+R    + L+Q +Y++KILS+FSM + K ++ PL  +  +S 
Sbjct: 1004 EMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPLPINLKVSS 1063

Query: 1449 EQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKW 1270
              SP N+     M +VPY++A+GS+M+ MICTRPDIA  V ++SRYM+NPG  HW  +K 
Sbjct: 1064 SMSPSNEEGRMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKR 1123

Query: 1269 LLRYLKSTMNVGLHFSKCSDGLKLV--GYVDSNNANDRDNRKSTTSYVFTLCGSCISWKS 1096
            +LRY+K T +V L    C  G   +  GYVDS+ A D D  KSTT YVF + G  +SW S
Sbjct: 1124 ILRYIKGTSDVAL----CYGGSDFIINGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVS 1179

Query: 1095 QLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVF 916
            +LQ +VA S           A KEAIWLK LL E+ H  +   +F DSQSA+ L +NP F
Sbjct: 1180 KLQAVVATSTTEAEYVAATQASKEAIWLKMLLEELGHKQEFVSLFCDSQSALHLARNPAF 1239

Query: 915  HDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
            H RTKHI V++HFIR+ V +G V  +KIHT  N AD  TK + V K
Sbjct: 1240 HSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVADFLTKIINVDK 1285


Top