BLASTX nr result
ID: Mentha27_contig00019657
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha27_contig00019657
(4479 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 959 0.0
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 938 0.0
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 929 0.0
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 927 0.0
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 926 0.0
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 924 0.0
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 924 0.0
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 912 0.0
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 910 0.0
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 901 0.0
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 886 0.0
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 881 0.0
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 877 0.0
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 872 0.0
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 864 0.0
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 864 0.0
emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera] 861 0.0
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 857 0.0
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 848 0.0
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 848 0.0
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 959 bits (2479), Expect = 0.0
Identities = 530/1258 (42%), Positives = 739/1258 (58%), Gaps = 18/1258 (1%)
Frame = -1
Query: 4470 SKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYG--RDSITL 4297
+K IDENID F K++ D+ D+ A++LL+++P Y+ L ++Y R+ + L
Sbjct: 105 NKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRL 164
Query: 4296 DIVVNALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXX 4117
D V+ A + KEREL N + ARGRP +
Sbjct: 165 DDVMVAARDKERELSQNN--RPVVEGHFARGRPDG-----------KNNNQGNKGKNRSR 211
Query: 4116 XXXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENF----GEMYVVTDVSDMP 3949
C+ CG+ GH+ K C + NGE+ E + V
Sbjct: 212 SKSADGKRVCWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLAT 271
Query: 3948 XXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICL 3769
+D+GCSFHM+P ++ F +++E+ GYV + N+ V G+G I +
Sbjct: 272 DETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKI 331
Query: 3768 KFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNN 3589
+ + G+ L +VR++P++ NL+S LED G K G++KI+KG + K +K++
Sbjct: 332 RNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDT 391
Query: 3588 LYICHAESVLDNVNCVNSVQ-DDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFC 3412
LYI + V + +S + D+T+LWH RLGHMS KG+EIL K G ++ + + FC
Sbjct: 392 LYIL--DGVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFC 449
Query: 3411 DSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGN-RYFLSVIDDYSR 3235
+ CV GKQH V F P L Y+H+D+WG P+ GN +YF+S +DDYSR
Sbjct: 450 EDCVYGKQHRVSF----APAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSR 505
Query: 3234 KVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRH 3055
KVW + L+ K + ++F +WK ++ENQ+ +K+K LRTDNGLE+CN + C + GI RH
Sbjct: 506 KVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRH 565
Query: 3054 KTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGK 2875
KT YTPQQNG+ ER+NRT+++KVR + G+ K+FW EA TA YL+NRSPS +
Sbjct: 566 KTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFD 625
Query: 2874 CPEHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPG 2695
PE ++G LPDLS+L+ FGC A++H KL PRS+K +F YPEGVKGY++W +
Sbjct: 626 LPEEKWTGALPDLSSLRKFGCLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVW--VLED 683
Query: 2694 FKVVVSRDVIFNESE-FPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQL--PEMDPL 2524
K V+SR+VIF E F L + S+SD+ ++ +PD+ E D
Sbjct: 684 KKCVISRNVIFREQVMFKDLKGDSQNTISESDL--EDLRVNPDMNDQEFTDQGGATQDNS 741
Query: 2523 NDVHAENDYELGVNN----HDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEK 2356
N A + +N+ DEE E D + S YQL RDR RR +K K
Sbjct: 742 NPSEATTSHNPVLNSPTHSQDEES------EEEDSDAVEDLSTYQLVRDRVRRTIKANPK 795
Query: 2355 FNEFQMSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKP 2176
+NE M FA+ E EP SY+EA+ + +W AMK EM S+ N TW LV KP
Sbjct: 796 YNESNMVGFAY-YSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKP 854
Query: 2175 DSISVVDCKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIML 2005
+ + ++ C+W+F K E+ RF ARLVAKGFTQKEG+DY EIF+PVVK ++R +L
Sbjct: 855 EKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLL 914
Query: 2004 ALVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPR 1825
++V +N EL+QMDV TAFLHG L++ IYM QPEGF + N VCLLK++LYGLKQSPR
Sbjct: 915 SMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPR 974
Query: 1824 QWNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNC 1645
QWN+RFD+ M+ +K+ RS YD C+YFK + I+LL+YVDDML+ S + ++
Sbjct: 975 QWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQL 1034
Query: 1644 LCDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASH 1465
L F+MKDLGDA+KILGM I R+R L L+Q YV+K+L F M NAKPV+ PL H
Sbjct: 1035 LSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIH 1094
Query: 1464 FVLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHW 1285
F L + + + MK VPY+N IGS+MY MI TRPD+AY + ++SR+MS P HW
Sbjct: 1095 FKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHW 1154
Query: 1284 EALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCIS 1105
+A+KW+LRY++ T L F K D L L GY DS+ ++ D R+S T YVFT+ G+ IS
Sbjct: 1155 QAVKWVLRYMRGTEKKKLCFRKQEDFL-LRGYCDSDYGSNFDTRRSITGYVFTVGGNTIS 1213
Query: 1104 WKSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKN 925
WKS+LQ +VA+S A KEA+WLKG +E+ H V SDSQSAI L KN
Sbjct: 1214 WKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAITLAKN 1273
Query: 924 PVFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKILN 751
V H+RTKHI++R HFIRDI+ G++K KI T+ NPA++ TK +P+ K F+ LN
Sbjct: 1274 SVHHERTKHIDIRLHFIRDIICAGLIKVVKIATECNPANIFTKTVPLAK---FEGALN 1328
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 938 bits (2425), Expect = 0.0
Identities = 526/1243 (42%), Positives = 745/1243 (59%), Gaps = 15/1243 (1%)
Frame = -1
Query: 4461 IDENIDVFTKLLQDIKSTGDKNI-DDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVV 4285
I ++ID F K++ D++ + I D+ A LL+++P+SY + YGR ++TL+ V
Sbjct: 120 IQDHIDTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVK 179
Query: 4284 NALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXX 4105
+L SKE + K+C + S+ + AR
Sbjct: 180 ASLSSKEIQ-KNCELETSNGEGLMARTEKKKDQK--------NKNQGKGHGKNQETADKK 230
Query: 4104 XXXXKCYSCGEPGHYAKDCSXXXXXXNEH----ANVASNGENFGEMYVVTDVSDMPXXXX 3937
KC+ C + GHY +DC ++ A VAS+ + G Y D+
Sbjct: 231 KKKRKCFYCRKEGHYIRDCFEKKKKESQEKSGDAAVASDDGSDG--YQSADL------LV 282
Query: 3936 XXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMG----EICL 3769
+DSGCSFH+ P + LF YE V G V + N CN++G+ CL
Sbjct: 283 ASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCL 342
Query: 3768 KFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNN 3589
+ +L VRH P L NL+S L+ +G K G +++ KG+ +V K +N
Sbjct: 343 MEL---LRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENG 399
Query: 3588 LYICHAESV--LDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPF 3415
LY+ SV + V+ V+ ++D+T LWH RLGHMS KGL+ L K G+ G D++ + F
Sbjct: 400 LYVLQGSSVPVQEGVSAVS--EEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEF 457
Query: 3414 CDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSR 3235
C++C+ GK H +F + +MSK VL+Y H D WG + VPS G RYF+S+IDDYSR
Sbjct: 458 CENCIFGKSHRSKF--NKGEHMSK--QVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSR 513
Query: 3234 KVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRH 3055
KVW ++LK K L++F+ WK+L+ENQ+ K+K LRTDNGLEFC+K+ ++ C K+GIKRH
Sbjct: 514 KVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRH 573
Query: 3054 KTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGK 2875
KTV +TPQQNG+ ERMNRTL++K RC+ + L + FW EA++TA+YLVNRSPS + K
Sbjct: 574 KTVRFTPQQNGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFK 633
Query: 2874 CPEHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPG 2695
PE +++GK + NL+VFGC A++H KLE R+ K VF+GYP+GVKGY++W +
Sbjct: 634 TPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG- 692
Query: 2694 FKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDV 2515
K +VSRDV+F+ES L S D + + + VE L D ++
Sbjct: 693 -KCIVSRDVVFHESVL--LKESAEHDAGLQDNPAANKRSGSETSKVNVELL--TDKSSEK 747
Query: 2514 HAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMS 2335
A +D DE E V + NYQL RDR RR V+ P ++ +
Sbjct: 748 EAASD--------DERATAESEEHEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLI 799
Query: 2334 FFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVD 2155
+A + + EP ++ EA++S + +WL AM+ EM SL N+TW L+P P + +++
Sbjct: 800 AYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLIN 859
Query: 2154 CKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFN 1984
CKW+FK + E ++KARLVA+GFTQ+EG+D+ EIF+PVVK +++RI+LA+VA +
Sbjct: 860 CKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLD 919
Query: 1983 WELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFD 1804
EL+QMDV TAFLHG+L++ I M QPEGF ++VCLL K+LYGLKQSPRQW RFD
Sbjct: 920 LELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFD 979
Query: 1803 KCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKM 1624
M S ++RS YD C+YF D +LL+YVDDML+ S I+ ++N L F+M
Sbjct: 980 DFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEM 1039
Query: 1623 KDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQ 1444
KDLG+A++ILGM+I+R+R TL L+Q Y++K+L +F M + KPV PL F LS
Sbjct: 1040 KDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAAT 1099
Query: 1443 SPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLL 1264
+ +++S+MN + PY+ A+GS+MY M+CTR DIAY VS++SRY+S PG HW A+KW++
Sbjct: 1100 TSEDESQMN---EFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIM 1156
Query: 1263 RYLKSTMNVGLHFSKC-SDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQ 1087
RYLK + GL + K SD ++++G+VDS+ A D D RKST+ Y+F L ISWKS LQ
Sbjct: 1157 RYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQ 1216
Query: 1086 GIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDR 907
ALS A KEA+WL+GLL+E+ K VF D+Q+AI L KN ++H+R
Sbjct: 1217 SGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHER 1276
Query: 906 TKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
TKHI+V+ FIRD V KG V KIHT VNPAD TK LP K
Sbjct: 1277 TKHIDVKLQFIRDEVGKGTVVVSKIHTSVNPADALTKSLPTAK 1319
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 929 bits (2400), Expect = 0.0
Identities = 511/1238 (41%), Positives = 733/1238 (59%), Gaps = 12/1238 (0%)
Frame = -1
Query: 4455 ENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNAL 4276
+++ F +++ D++S K ++ ++LL ++P SY + + I Y RD++TL V +AL
Sbjct: 326 DHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDAL 385
Query: 4275 KSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXX 4096
KE+ K S+ + A G
Sbjct: 386 HVKEKMKKMVPSEGSNSQ---AEG--LIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRY 440
Query: 4095 XKCYSCGEPGHYAKDCSXXXXXXNEHANVASNG--ENFGEMYVVTDV-SDMPXXXXXXXX 3925
C C GH +C G E G+ VVTD SD
Sbjct: 441 KSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGC 500
Query: 3924 XXXXXXXV-DSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNV 3748
+ ++ C +HM P R+ F+ YE V+ G V + ++ C V G+G + +K G +
Sbjct: 501 AQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCI 560
Query: 3747 FTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAE-KQNNLYICHA 3571
TL +VRH+P+L +L+S L+ G + G G++K+ KGSLVV KA+ K NLY
Sbjct: 561 RTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRG 620
Query: 3570 ESVLDNVNCVNSV--QDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVL 3397
++L NV V+ D T+LWH RLGHM+ GL L K G+ + + FC+ C+
Sbjct: 621 TTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIF 680
Query: 3396 GKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFL 3217
GK V+F S+ +L+Y+H+D+WG + S GG RY ++++DDYSRKVW +
Sbjct: 681 GKHKRVKFNTST----HTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYF 736
Query: 3216 LKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYT 3037
LK+K D F++WKT++E QT +K+K LRTDNG+EFC+K+ C GI RH TVP+T
Sbjct: 737 LKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHT 796
Query: 3036 PQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVF 2857
PQQNGV ERMNRT++ K RCL GL K+FW EA+ TA YL+NRSPS + K P V+
Sbjct: 797 PQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVW 856
Query: 2856 SGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVS 2677
SG + S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY+LW KVV+S
Sbjct: 857 SGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVIS 914
Query: 2676 RDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAENDY 2497
R+V+F+E SV + S P E ++ + +VE L ++ HA
Sbjct: 915 RNVVFHE--------SVMLHDKPSTNVPVESQEKASV---QVEHL-----ISSGHAPEKE 958
Query: 2496 ELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKF-NEFQMSFFAFN 2320
++ + N DE + E + + + + +DR +R +KPP+++ E + +A +
Sbjct: 959 DVAI-NQDEPVI-----EDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALS 1012
Query: 2319 VFESLD-NSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCKWL 2143
V E ++ N+EP++Y EAI S++ W+ AM EM SL N TW LV P + CKW+
Sbjct: 1013 VAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWI 1072
Query: 2142 FKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWELK 1972
FK K ++ R+KARL+AKG++Q GID+ ++F+PVVK +++R +L++VA ++EL+
Sbjct: 1073 FKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELE 1132
Query: 1971 QMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKCMQ 1792
QMDV TAFLHG+L++ IYM+QP+GFV N VC LKK+LYGLKQSPRQW RFD M
Sbjct: 1133 QMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFML 1192
Query: 1791 SLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKDLG 1612
S KF+RS YD C+Y K VD I+LL+YVDDML+ + I ++ L F+MKDLG
Sbjct: 1193 SQKFRRSNYDSCVYLKVVDGSA-IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLG 1251
Query: 1611 DARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSPKN 1432
A+KILGM I R R L L+Q Y+EK+L +F+M +AKPV+ PLA+HF LS + P++
Sbjct: 1252 AAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQS 1311
Query: 1431 DSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRYLK 1252
D ++ M +VPYS+A+GS+MY M+C+RPD+++ +S++SRYM+NPG HW+A++W+ RYL+
Sbjct: 1312 DYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLR 1371
Query: 1251 STMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIVAL 1072
T + L F + DG LVGYVDS+ A D D +S YVFT+ G +SWK+ LQ VAL
Sbjct: 1372 GTSSACLQFGRSRDG--LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVAL 1429
Query: 1071 SXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKHIE 892
S A KEAIWL+GL + +C + +F DSQSAI L K+ +FH+RTKHI+
Sbjct: 1430 STTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHID 1489
Query: 891 VRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
VR+HFIR ++ +G VK KI NPADM TK +P K
Sbjct: 1490 VRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATK 1527
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 927 bits (2396), Expect = 0.0
Identities = 514/1248 (41%), Positives = 733/1248 (58%), Gaps = 27/1248 (2%)
Frame = -1
Query: 4440 FTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALKSKER 4261
F K++ D+ S K D+ ++LL ++P SY + + I RD +TL V +AL++KE+
Sbjct: 122 FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181
Query: 4260 -ELKHCNIGKSSER--VMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXXXK 4090
++ N G SS + +H RGR
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR----------GRSKSKPPGNKKF 231
Query: 4089 CYSCGEPGHYAKDCSXXXXXXNEH--------ANVASNGENFGEMYVVTDVSDMPXXXXX 3934
C C H +C ++ A+ A++ ++ G+ VV
Sbjct: 232 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVV----------FA 281
Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHG-YVSLANEKKCNVLGMGEICLKFAS 3757
+DS CSFH+ RN FS+Y+ V+ G V + ++ C ++G+G + +K
Sbjct: 282 GCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDD 341
Query: 3756 GNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQN-NLYI 3580
G TLKNVR++P + NL+S + L+ G + GV+K+ KGSLV K + + LY+
Sbjct: 342 GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYV 401
Query: 3579 CHAESVLDNVNCVNSVQDD---KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCD 3409
++ + + +V +D KT+LWH RLGHMS+ G+ L K + S + FC+
Sbjct: 402 LRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCE 461
Query: 3408 SCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKV 3229
C+ GK VQF S + L+Y+HAD+WG S PS GG RY L+VIDDYSRKV
Sbjct: 462 HCIFGKHKRVQFNTS----VHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKV 517
Query: 3228 WTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKT 3049
W + LK+K D F+ WK +IE QT +K+K LRTDNG EFC+ +D C + GI RH T
Sbjct: 518 WPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHT 577
Query: 3048 VPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCP 2869
+P+TPQQNGV ERMNRT++ + RC+ ++KRFW EA TA YL+NRSPS+PL K P
Sbjct: 578 IPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTP 637
Query: 2868 EHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFK 2689
V+SG D S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY+LW+ K
Sbjct: 638 IEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG--K 695
Query: 2688 VVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHA 2509
+SR V+FNE SV +NS PSE ++ + Q+ +D V
Sbjct: 696 TFMSRSVVFNE--------SVMFTNS----LPSEHVPEKELQRMHM-QVEHVDDDTGVQV 742
Query: 2508 ENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRD------RSRRVVKPPEK-FN 2350
E +E +N+D + + HDDV QL + +S+R KPP++
Sbjct: 743 EPVHEQDDHNND------VADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE 796
Query: 2349 EFQMSFFAFNVFESLDN-SEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPD 2173
E +S++A + E ++N EP +Y+EA++ +S W++AM EM SL N TW +VP P
Sbjct: 797 ECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPK 856
Query: 2172 SISVVDCKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLA 2002
+ CKW+FK K +E ++KARLVA+G++Q G+DY ++F+PVVK +++R L+
Sbjct: 857 KKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLS 916
Query: 2001 LVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQ 1822
+VA + EL+Q+DV TAFLHG+L++ IYM QPEGF+ +VC LK++LYGLKQSPRQ
Sbjct: 917 IVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQ 976
Query: 1821 WNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCL 1642
WN RFD M S FKRS YD C+Y K V+ PI+LL+YVDDML+ + I ++ L
Sbjct: 977 WNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLIAAKSKIEITKLKKLL 1035
Query: 1641 CDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHF 1462
F MKDLG A+KILGM I R+RK L L+Q +Y++K+L +F+M NAK V+ P+A HF
Sbjct: 1036 SSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHF 1095
Query: 1461 VLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWE 1282
LS Q P D+E+ M +VPYS+A+GS+MY M+C+RPD++Y +S++SRYMSNPG HW
Sbjct: 1096 KLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWR 1155
Query: 1281 ALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISW 1102
A++W+ RYL+ T L F + G L+GYVDS+ A D D R+S T YVFT+ +SW
Sbjct: 1156 AVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSW 1213
Query: 1101 KSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNP 922
++ LQ +VALS A KE IWLKGL +E+ ++ + DSQSAI L K+
Sbjct: 1214 RATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQ 1273
Query: 921 VFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
+FH+RTKHI++++HF+RD++++G +K KI T NPADM TK +PV K
Sbjct: 1274 MFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAK 1321
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 926 bits (2394), Expect = 0.0
Identities = 514/1245 (41%), Positives = 722/1245 (57%), Gaps = 20/1245 (1%)
Frame = -1
Query: 4452 NIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALK 4273
+I F K++ D+ S K D+ ++LL ++P SY + + I RD +TL V +AL+
Sbjct: 120 HIAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQ 179
Query: 4272 SKER-ELKHCNIGKSSER--VMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXX 4102
+KE+ ++ N G SS + +H RGR
Sbjct: 180 NKEKMKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRR----------GRSKSKPPG 229
Query: 4101 XXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXXXXXX 3922
C C H +C E N + V D S
Sbjct: 230 NKKFCVYCKLKNHNIDECKKVQAK--ERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVA 287
Query: 3921 XXXXXXVDSGCSFHMSPFRNLFSNYEEVKHG-YVSLANEKKCNVLGMGEICLKFASGNVF 3745
+DS CSFH+ RN FS+Y+ V+ G V + ++ C ++G+G + +K G
Sbjct: 288 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 347
Query: 3744 TLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQN-NLYICHAE 3568
TLKNVR++P + NL+S + L+ G + GV+K+ KGSLV K + + LY+
Sbjct: 348 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGC 407
Query: 3567 SVLDNVNCVNSVQDD---KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVL 3397
++ + + +V +D KT+LWH RLGHMS+ G+ L K + S + FC+ C+
Sbjct: 408 TLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIF 467
Query: 3396 GKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFL 3217
GK VQF S + L+Y+HAD+WG S PS GG RY L++IDDYSRKVW +
Sbjct: 468 GKHKRVQFNTS----VHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYF 523
Query: 3216 LKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYT 3037
LK+K D F+ WK +IE QT +K+K L TDNG EFC+ +D C + GI RH T+P+T
Sbjct: 524 LKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHT 583
Query: 3036 PQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVF 2857
PQQNGV ERMNRT++ + RC+ ++KRFW EA TA YL+NRSPS+PL K P V+
Sbjct: 584 PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 643
Query: 2856 SGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVS 2677
SG D S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY+LW+ K +S
Sbjct: 644 SGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG--KTFMS 701
Query: 2676 RDVIFNES-EFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAEND 2500
R V+FNES F S + +VE D +VE + E D N+ A++D
Sbjct: 702 RSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDD 761
Query: 2499 YELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRD------RSRRVVKPPEK-FNEFQ 2341
HDDV QL D +S+R KPP++ E
Sbjct: 762 --------------------AHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECN 801
Query: 2340 MSFFAFNVFESLDN-SEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSIS 2164
+S++A + E ++N EP +Y+EA++ +S W++AM EM SL N TW +VP P
Sbjct: 802 LSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKK 861
Query: 2163 VVDCKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVA 1993
+ CKW+FK K +E ++KARLVA+G++Q G+DY ++F+PVVK +++R L++VA
Sbjct: 862 TISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVA 921
Query: 1992 QFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNI 1813
+ EL+Q+DV TAFLHG+L++ IYM QPEGF+ +VC LK++LYGLKQSPRQWN
Sbjct: 922 SHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNK 981
Query: 1812 RFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDN 1633
RFD M S FKRS YD C+Y K V+ PI+LL+YVDDML+ + I ++ L
Sbjct: 982 RFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLIAAKSKIEITKLKKLLSSE 1040
Query: 1632 FKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLS 1453
F MKDLG A+KILGM I R+RK L L+Q +Y++K+L +F+M NAK V+ P+A HF LS
Sbjct: 1041 FDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLS 1100
Query: 1452 KEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALK 1273
Q P D+E+ M +VPYS+A+GS+MY M+C+RPD++Y +S++SRYMSNPG HW AL+
Sbjct: 1101 AAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQ 1160
Query: 1272 WLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQ 1093
W+ RYL+ T L F + G L+GYVDS+ A D D R+S T YVFT+ +SW++
Sbjct: 1161 WIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRAT 1218
Query: 1092 LQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFH 913
LQ +VALS A KE IWLKGL +E+ ++ + DSQSAI L K+ +FH
Sbjct: 1219 LQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFH 1278
Query: 912 DRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
+RTKHI++++HF+RD++++G +K KI T NPADM TK +PV K
Sbjct: 1279 ERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAK 1323
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 924 bits (2388), Expect = 0.0
Identities = 511/1248 (40%), Positives = 731/1248 (58%), Gaps = 27/1248 (2%)
Frame = -1
Query: 4440 FTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALKSKER 4261
F K++ D+ S K D+ ++LL ++P SY + + I RD +TL V +AL++KE+
Sbjct: 122 FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181
Query: 4260 -ELKHCNIGKSSER--VMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXXXK 4090
++ N G SS + +H RGR
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR----------GRSKSKPPGNKKF 231
Query: 4089 CYSCGEPGHYAKDCSXXXXXXNEH--------ANVASNGENFGEMYVVTDVSDMPXXXXX 3934
C C H +C ++ A+ A++ ++ G+ VV
Sbjct: 232 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVV----------FA 281
Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHG-YVSLANEKKCNVLGMGEICLKFAS 3757
+DS CSFH+ RN FS+Y+ V+ G V + ++ C ++G+G + +K
Sbjct: 282 GCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDD 341
Query: 3756 GNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQN-NLYI 3580
G TLKNVR++P + NL+S + L+ G + GV+K+ KGSLV K + + LY+
Sbjct: 342 GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYV 401
Query: 3579 CHAESVLDNVNCVNSVQDD---KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCD 3409
++ + + +V +D KT+LWH RLGHMS+ G+ L K + S + FC+
Sbjct: 402 LRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCE 461
Query: 3408 SCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKV 3229
C+ GK VQF S + L+Y+HAD+WG S PS GG RY L++IDDYSRKV
Sbjct: 462 HCIFGKHKRVQFNTS----VHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKV 517
Query: 3228 WTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKT 3049
W + LK+K D F+ WK +IE QT +K+K LRTDNG EFC+ +D C + GI RH T
Sbjct: 518 WPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHT 577
Query: 3048 VPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCP 2869
+P+TPQQNGV ERMNRT++ + RC+ ++KRFW EA TA YL+NRSPS+PL K P
Sbjct: 578 IPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTP 637
Query: 2868 EHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFK 2689
V+SG D S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY+LW+ K
Sbjct: 638 IEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG--K 695
Query: 2688 VVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHA 2509
+SR V+FNE SV +NS PSE ++ + Q+ +D V
Sbjct: 696 TFMSRSVVFNE--------SVMFTNS----LPSEHVPEKELQRMHM-QVEHVDDYTGVQV 742
Query: 2508 ENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRD------RSRRVVKPPEK-FN 2350
E +E +N+D + + HDDV QL + +S+R KPP++
Sbjct: 743 EPVHEQDDHNND------VADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE 796
Query: 2349 EFQMSFFAFNVFESLDN-SEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPD 2173
E +S++A + E ++N EP +Y+EA++ +S W++AM EM SL N TW +VP P
Sbjct: 797 ECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPK 856
Query: 2172 SISVVDCKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLA 2002
+ CKW+FK K +E ++KARLVA+G++Q G+DY ++F+PVVK +++R L+
Sbjct: 857 KKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLS 916
Query: 2001 LVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQ 1822
+VA + EL+Q+DV TAFLHG+L++ IYM QPEGF+ +VC LK++LYGLKQSPRQ
Sbjct: 917 IVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQ 976
Query: 1821 WNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCL 1642
WN RFD M S FKRS YD C+Y K V+ PI+LL+YVDDML+ + I ++ L
Sbjct: 977 WNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLIAAKSKIEITKLKKLL 1035
Query: 1641 CDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHF 1462
F MKDLG A+KIL M I R+RK L L+Q +Y++K+L +F+M NAK V+ P+A HF
Sbjct: 1036 SSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHF 1095
Query: 1461 VLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWE 1282
LS Q P D+E+ M +VPYS+A+GS+MY M+C+RPD++Y +S++SRYMSNPG HW
Sbjct: 1096 KLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWR 1155
Query: 1281 ALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISW 1102
++W+ RYL+ T L F + G L+GYVDS+ A D D R+S T YVFT+ +SW
Sbjct: 1156 VVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSW 1213
Query: 1101 KSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNP 922
++ LQ +VALS A KE IWLKGL +E+ ++ + DSQSAI L K+
Sbjct: 1214 RATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQ 1273
Query: 921 VFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
+FH+RTKHI++++HF+RD++++G +K KI T NPADM TK +PV K
Sbjct: 1274 MFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAK 1321
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 924 bits (2387), Expect = 0.0
Identities = 510/1252 (40%), Positives = 732/1252 (58%), Gaps = 16/1252 (1%)
Frame = -1
Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVN 4282
ID+N+D F +++ ++ S + ++ A+++LN++P S+ LK ++YG ++T+ V +
Sbjct: 141 IDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNKTLTVQDVTS 200
Query: 4281 ALKSKERELKHC-NIGKSSERVMHA--RGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXX 4111
+ KS EREL ++ K V++ RGRP
Sbjct: 201 SAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTKVP----- 255
Query: 4110 XXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXXX 3931
C+ C + GH KDC + + S G+ GE V+T+
Sbjct: 256 -------CWYCKKEGHVKKDC------YSRKKKMESEGQ--GEAGVITEKLVFSEALSVN 300
Query: 3930 XXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGN 3751
+DSGC+ HM+ R+ F +++E + + L ++ G G I + G
Sbjct: 301 EQMVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGT 360
Query: 3750 VFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHA 3571
+ L+NV++VP L NL+S L+ +G + G+G ++ K + + N LY+
Sbjct: 361 IKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDG 420
Query: 3570 ESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGK 3391
+V+ + C KT+LWH RLGHMS L++L G+ + +++ + FC+ CV+GK
Sbjct: 421 STVMSEL-CNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGK 479
Query: 3390 QHHVQFPISSVPNMSKCTS--VLEYLHADVWGHSSV-PSHGGNRYFLSVIDDYSRKVWTF 3220
V F N+ K TS L Y+HAD+WG +V PS G +YFLS+IDD +RKVW +
Sbjct: 480 SKKVSF------NVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLY 533
Query: 3219 LLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPY 3040
LK+K + D+F +WK+L+ENQ KK+K LRTDNGLEFCN D C ++GI+RH+T Y
Sbjct: 534 FLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTY 593
Query: 3039 TPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHV 2860
TPQQNGV ERMNRT++EKVRCL G+ + FW EA TA YL+NRSP+ + PE +
Sbjct: 594 TPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEM 653
Query: 2859 FSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVV 2680
+ + P +L+ FG A+VHQ KL+PR+ K FLGYP G KGY++W + K V+
Sbjct: 654 WLNRKPGYKHLRKFGSIAYVHQDQGKLKPRALKGFFLGYPAGTKGYKVW--LLEEEKCVI 711
Query: 2679 SRDVIFNESEF--PCLTASVSTSN-SKSDIAPSEVEQSPDIAPSE----VEQLPEMDPLN 2521
SR+V+F ES T N ++ + SEVEQ+ S ++ + +P+
Sbjct: 712 SRNVVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPIT 771
Query: 2520 DVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQ 2341
+ G + D E +E +T G + Y+L RDR RR + PP +F E
Sbjct: 772 E---------GEQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEES 822
Query: 2340 MSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISV 2161
FA V E+ EP SY+EA++S++ +W A EM+SL N TW LV KP +
Sbjct: 823 SVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKI 882
Query: 2160 VDCKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQ 1990
+ C+WLFK+K E TRFKARLVAKG+TQ+EG+DY EIFAPVVK ++RI+++LV
Sbjct: 883 IGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVD 942
Query: 1989 FNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIR 1810
+ EL+QMDV T FLHGDL++ +YM+QPEGFV + N VC LKK+LYGLKQSPRQWN R
Sbjct: 943 KDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKR 1002
Query: 1809 FDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNF 1630
FD+ M S +F RS +D C+Y K V I+LL+YVDDML+ I V+ L F
Sbjct: 1003 FDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEF 1062
Query: 1629 KMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSK 1450
+MKD+G A +ILG++I R+RK L L+Q Y+ K+L +F+MS AK N P+ +HF L+
Sbjct: 1063 EMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLA- 1121
Query: 1449 EQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKW 1270
+ + + E VPYS+A+GS+MY M+ TRPD+AY + ++SRYMS PG HWEA+KW
Sbjct: 1122 --AVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKW 1179
Query: 1269 LLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQL 1090
++RYLK ++ L F+K D + GY DSN A D D R+S + YVFT+ G+ +SWK+ L
Sbjct: 1180 VMRYLKGAQDLNLVFTKEKD-FTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASL 1238
Query: 1089 QGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHD 910
Q +VA+S A KEA+W+KGLL ++ ++ DSQSAI L KN V+H+
Sbjct: 1239 QPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHE 1298
Query: 909 RTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKIL 754
RTKHI+VRF++IRD+V+ G V KIHT NP D TKC+PV K S +L
Sbjct: 1299 RTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVL 1350
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 912 bits (2358), Expect = 0.0
Identities = 505/1242 (40%), Positives = 735/1242 (59%), Gaps = 7/1242 (0%)
Frame = -1
Query: 4455 ENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNAL 4276
E+++ LL ++++ K D+ +A++LL ++P S+ + + G+D+++L+ V +AL
Sbjct: 117 EHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSAL 176
Query: 4275 KSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXX 4096
S REL+H G S++ +
Sbjct: 177 HS--RELRHKANGTSTD------------IQPSGLFTSSRKGRKNGGKKNKPMSKGAKPD 222
Query: 4095 XKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXXXXXXXX 3916
C C E GH+ DC + + A+ E T+ +
Sbjct: 223 DVCNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEED------TNSEEDIALVADEHTHHS 276
Query: 3915 XXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNVFTLK 3736
+DSG S+H+ P R F+ YE+V G +S+AN C V+G G I ++ G+ TL
Sbjct: 277 DVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLN 336
Query: 3735 NVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHAESVLD 3556
VRHVP + NL+S + L+ G GV+++ KGS ++ K + LY +V
Sbjct: 337 EVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTG 396
Query: 3555 NVNCVNSV--QDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGKQHH 3382
+ + +S Q D T LWH RLGHM +G++IL K + K+ S+ FC+ CV GK H
Sbjct: 397 SAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHR 456
Query: 3381 VQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFLLKNKS 3202
+FP + + + L+Y+H+D WG V S GG R+F+S+IDDYSR W +++K+KS
Sbjct: 457 NKFPKA----IHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKS 512
Query: 3201 DVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTPQQNG 3022
+ +F++WK L+ENQTGKKIK LRTDNGLEFC D C GI RH+TV TPQQNG
Sbjct: 513 EAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNG 572
Query: 3021 VTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFSGKLP 2842
V ERMN+TLLE+ RC+ GL +RFW EA+ TA YL+NR P +Q K P ++SGK
Sbjct: 573 VAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAA 632
Query: 2841 DLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVSRDVIF 2662
D SNLK FGC A+ H KLEPR++K VF+GY +GVKG+R+W + +V++SR+V+F
Sbjct: 633 DYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMSRNVVF 690
Query: 2661 NESEFPCLTASVS-TSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAENDYELGV 2485
+ES P L V T+ S++ +VE S++++ E D + E D
Sbjct: 691 DES--PLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEED--QEPQTETDIP--- 743
Query: 2484 NNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRV-VKPPEKFNEFQMSFFAFNVFES 2308
E++ D+ + + +DR RRV V+PP ++ M +A V E
Sbjct: 744 -------------ESMPSDI-----HQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEE 785
Query: 2307 LDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCKWLFKVKH 2128
+D SEP++Y+EAI S +S +W AM EM SLH N+TW LV +P ++ CKW+FK K
Sbjct: 786 VDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKE 845
Query: 2127 ---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWELKQMDVT 1957
AE ++KAR+VA+GF Q+EG+DY EIF+PVV+ T++R++LA+VA N EL+Q+DV
Sbjct: 846 GISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVK 905
Query: 1956 TAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKCMQSLKFK 1777
TAFLHG+L++ IYM QP+GF NHVC LKK+LYGLKQSPRQW RFD M L +
Sbjct: 906 TAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYT 965
Query: 1776 RSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKDLGDARKI 1597
RS YD C+Y+ ++ I+L++YVDDML+ + I+ ++ L F+MKDLG ARKI
Sbjct: 966 RSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKI 1025
Query: 1596 LGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSPKNDSEMN 1417
LGM I+R+R++ L L+Q SY++K+L++F MS++KP++ P A++ L+ +P+++ E
Sbjct: 1026 LGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKE 1085
Query: 1416 AMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRYLKSTMNV 1237
M +VPY++A+GS+MY M+CTRPD+A+ VS++SR+M PG HW+A+K + RYL+ T +V
Sbjct: 1086 YMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDV 1145
Query: 1236 GLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIVALSXXXX 1057
GL + + L + GY DS+ A D D R+S T YVFTL GS +SWK+ LQ V LS
Sbjct: 1146 GLIYGGDTQCL-VTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEA 1204
Query: 1056 XXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKHIEVRFHF 877
A KE IWLKGL+S++ A V+ DS SAI L K+ V H+RTKHI+VR+HF
Sbjct: 1205 EYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHF 1264
Query: 876 IRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKILN 751
+R + +K +K+ T NPADM TK +P K +LN
Sbjct: 1265 LR---SEKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLN 1303
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 910 bits (2352), Expect = 0.0
Identities = 504/1240 (40%), Positives = 726/1240 (58%), Gaps = 14/1240 (1%)
Frame = -1
Query: 4455 ENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNAL 4276
+++ F +++ D++S K ++ ++LL ++P SY + + I Y RD++TL V +AL
Sbjct: 28 DHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDAL 87
Query: 4275 KSKERELKHCNIGKSSERV--MHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXX 4102
+KE+ K S+ + + RGR +
Sbjct: 88 HAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYKS--- 144
Query: 4101 XXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNG--ENFGEMYVVTDV-SDMPXXXXXX 3931
C C GH +C G E G+ VVTD SD
Sbjct: 145 ----CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYA 200
Query: 3930 XXXXXXXXXV-DSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASG 3754
+ D+ C++HM P R+ F+ YE V+ G V + ++ C V G+G + +K G
Sbjct: 201 GCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDG 260
Query: 3753 NVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAE-KQNNLYIC 3577
+ TL +VRH+P+L +L+S L+ G + G G++K+ KGSLVV KA+ K NLY
Sbjct: 261 CIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHL 320
Query: 3576 HAESVLDNVNCVNSV--QDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSC 3403
++L NV V+ D T+LWH RLGHMS GL L K G+ + + FC+ C
Sbjct: 321 RGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHC 380
Query: 3402 VLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWT 3223
+ GK V+F S+ +L+Y+H+D+WG + S GG RY ++++DDYSRKVW
Sbjct: 381 IFGKHKRVKFNTST----HTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWP 436
Query: 3222 FLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVP 3043
+ LK+K D F++WKT++E QT +K+K LRTDNG+E C+K+ C GI RH TVP
Sbjct: 437 YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVP 496
Query: 3042 YTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEH 2863
+TPQQNGV ERMNRT++ K RC+ L K+FW EA+ TA YL+NRSPS + K P
Sbjct: 497 HTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 556
Query: 2862 VFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVV 2683
V+SG + S+L+VFGC A+ H KLEPR KC+FLGY GVKGY+LW KVV
Sbjct: 557 VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETK--KVV 614
Query: 2682 VSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAEN 2503
+SR+V+F+E S+ + S P E ++ + +VE L ++ HA
Sbjct: 615 ISRNVVFHE--------SIMLHDKPSTNVPVESQEKVSV---QVEHL-----ISSGHAPE 658
Query: 2502 DYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKF-NEFQMSFFA 2326
++ +N E + + + +DR +R KPP ++ E + +A
Sbjct: 659 KEDVAINQDAPV------IEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYA 712
Query: 2325 FNVFESLD-NSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCK 2149
+V E ++ N+EP++Y +AI S++ W+ AM EM SL N +W L P + CK
Sbjct: 713 LSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCK 772
Query: 2148 WLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 1978
W+FK K ++ R+KARLVAKG++Q GID+ ++F+PVVK +++R +L++VA ++E
Sbjct: 773 WIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYE 832
Query: 1977 LKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKC 1798
L+QMDV TAFLHG+L++ IYM+QPEGFV N VC LKK+LYGLKQSPRQW RFD
Sbjct: 833 LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 892
Query: 1797 MQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKD 1618
M S KF+RS YD C+Y K VD I+LL+YVDDML+ + I ++ L F+MKD
Sbjct: 893 MLSQKFRRSNYDSCVYLKVVDGSA-IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKD 951
Query: 1617 LGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSP 1438
LG A+KILGM I R R L L+Q Y+EK+L +F+M +AK V+ LA+HF LS + P
Sbjct: 952 LGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCP 1011
Query: 1437 KNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRY 1258
++ ++ M +VPYS+A+ S+MY M+C+RPD+++ +S++SRYM+NPG HW+A++W+ RY
Sbjct: 1012 QSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRY 1071
Query: 1257 LKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIV 1078
L+ T + L F + SDG LVGYVDS+ A D D R+S T YVFT+ G +SWK+ LQ V
Sbjct: 1072 LRGTSSACLQFGRSSDG--LVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATV 1129
Query: 1077 ALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKH 898
ALS A KE IWL+GL +E+C + +F DSQSAI L K+ +FH+RTKH
Sbjct: 1130 ALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKH 1189
Query: 897 IEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
I++R+HFIR ++ +G VK KI T NP DM TK +P K
Sbjct: 1190 IDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATK 1229
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 901 bits (2329), Expect = 0.0
Identities = 496/1222 (40%), Positives = 716/1222 (58%), Gaps = 27/1222 (2%)
Frame = -1
Query: 4440 FTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALKSKER 4261
F K++ D+ S K D+ ++LL ++P SY + + I RD +TL V +AL++KE+
Sbjct: 122 FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181
Query: 4260 -ELKHCNIGKSSER--VMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXXXK 4090
++ N G SS + +H RGR
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR----------GRSKSKPPGNKKF 231
Query: 4089 CYSCGEPGHYAKDCSXXXXXXNEH--------ANVASNGENFGEMYVVTDVSDMPXXXXX 3934
C C H +C ++ A+ A++ ++ G+ VV
Sbjct: 232 CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVV----------FA 281
Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHG-YVSLANEKKCNVLGMGEICLKFAS 3757
+DS CSFH+ RN FS+Y+ V+ G V + ++ C ++G+G + +K
Sbjct: 282 GCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDD 341
Query: 3756 GNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQN-NLYI 3580
G TLKNVR++P + NL+S + L+ G + GV+K+ KGSLV K + + LY+
Sbjct: 342 GMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYV 401
Query: 3579 CHAESVLDNVNCVNSVQDD---KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCD 3409
++ + + ++ +D KT+LWH RLGHMS+ G+ L K + S + FC+
Sbjct: 402 LRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCE 461
Query: 3408 SCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKV 3229
C+ GK VQF S + L+Y+HAD+WG S PS GG RY L++IDDYSRKV
Sbjct: 462 HCIFGKHKRVQFNTS----VHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKV 517
Query: 3228 WTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKT 3049
W + LK+K D F+ WK +IE QT +K+K LRTDNG EFC+ +D C + GI RH T
Sbjct: 518 WPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHT 577
Query: 3048 VPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCP 2869
+P+TPQQNGV ERMNRT++ + RC+ ++KRFW EA TA YL+NRSPS+PL K P
Sbjct: 578 IPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTP 637
Query: 2868 EHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFK 2689
V+SG D S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY+LW+ K
Sbjct: 638 IEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG--K 695
Query: 2688 VVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHA 2509
+SR V+FNE SV +NS PSE ++ + Q+ +D V
Sbjct: 696 TFMSRSVVFNE--------SVMFTNS----LPSEHVPEKELQRMHM-QVEHVDDDTGVQV 742
Query: 2508 ENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRD------RSRRVVKPPEK-FN 2350
E +E +N+D + + HDDV QL + +S+R KPP++
Sbjct: 743 EPVHEQDDHNND------VADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE 796
Query: 2349 EFQMSFFAFNVFESLDN-SEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPD 2173
E +S++A + E ++N EP +Y+EA++ +S W++AM EM SL N TW +VP P
Sbjct: 797 ECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPK 856
Query: 2172 SISVVDCKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLA 2002
+ CKW+FK K +E ++KARLVA+G++Q G+DY ++F+PVVK +++R L+
Sbjct: 857 KKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLS 916
Query: 2001 LVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQ 1822
+VA + EL+Q+DV TAFLHG+L++ IYM QPEGF+ +VC LK++LYGLKQSPRQ
Sbjct: 917 IVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQ 976
Query: 1821 WNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCL 1642
WN RFD M S FKRS YD C+Y K V+ PI+LL+YVDDML+ + I ++ L
Sbjct: 977 WNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLIAAKSKIEITKLKKLL 1035
Query: 1641 CDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHF 1462
F MKDLG A+KILGM I R+RK L L+Q +Y++K+L +F+M NAK V+ P+A HF
Sbjct: 1036 SSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHF 1095
Query: 1461 VLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWE 1282
LS Q P D+E+ M +VPYS+A+GS+MY M+C+RPD++Y +S++SRYMSNPG HW
Sbjct: 1096 KLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWR 1155
Query: 1281 ALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISW 1102
A++W+ RYL+ T L F + G L+GYVDS+ A D D R+S T YVFT+ +SW
Sbjct: 1156 AVQWIFRYLRGTTYSCLKFGRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSW 1213
Query: 1101 KSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNP 922
++ LQ +VALS A KE IWLKGL +E+ ++ + DS+SAI L K+
Sbjct: 1214 RATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQ 1273
Query: 921 VFHDRTKHIEVRFHFIRDIVDK 856
+FH+RTKHI++++HF+RD++++
Sbjct: 1274 MFHERTKHIDIKYHFVRDVIEE 1295
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 886 bits (2289), Expect = 0.0
Identities = 506/1255 (40%), Positives = 721/1255 (57%), Gaps = 21/1255 (1%)
Frame = -1
Query: 4479 LDMSKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSIT 4300
++ D++++I F + +++ G K D+ +AV+LL+++P + K + + ++ IT
Sbjct: 86 MEEGDDLNDHICKFQNCIANLEKVGAKMDDEDTAVMLLHSLPPLFKHFKTTMIF-KELIT 144
Query: 4299 LDIVVNALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXX 4120
L V KS R + + S R ++ RG+
Sbjct: 145 LSKVCENPKSYIRLEREED--SSQARGLYVRGKERGRSRNRGGGFQGRGMSKSKGKGKGK 202
Query: 4119 XXXXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENF--------GEMYVVTD 3964
C+ G P H+ ++C + + +S N GE+ ++
Sbjct: 203 KDG-------CFIYGSPDHWKRNCKQWKEKKAQMSGESSQLANVVIGYNDEDGELLAIST 255
Query: 3963 VSDMPXXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGM 3784
S P D+ C+FH R+ F Y+E V + N+ ++G+
Sbjct: 256 SSGAPRHWTL-----------DTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGI 304
Query: 3783 GEICLKFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKA 3604
G + ++ G V L NVRH P L NL+S + ++ VG K GV+K+ KG +V K
Sbjct: 305 GMVKIRMHDGIVRALGNVRHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKG 364
Query: 3603 EKQ-NNLYICHAESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLS 3427
Q +N+Y +V ++DKT LW RRLGHMS +GL+ L K +
Sbjct: 365 AIQPDNMYKLTGSTVEGGAGVCT--EEDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSA 422
Query: 3426 SVPFCDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVID 3247
++ FC C LGKQ V F +SS N SK VL+Y+H DVWG S+ S GG RYF+S ID
Sbjct: 423 ALEFCRYCTLGKQTRVSFNLSSSENKSK--GVLDYIHTDVWGPSATISKGGARYFVSFID 480
Query: 3246 DYSRKVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYG 3067
D+SRKVW F +K K++V +F++WK + NQTG+KIK LR+DNG E+ +K +C G
Sbjct: 481 DFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEG 540
Query: 3066 IKRHKTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVP 2887
I RH TV +PQQNGV ERMNRTL+EK R +R GL + FW EA + A YL+NRSPS
Sbjct: 541 ITRHFTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRA 600
Query: 2886 LQGKCPEHVFSGKLPDLSNLKVFGCAAFVHQKGD---KLEPRSRKCVFLGYPEGVKGYRL 2716
+ KC E V+SGK D SNL+VFGC+A+ H D KLEP+S +C+F+G+ +GVKGY+L
Sbjct: 601 INFKCAEEVWSGKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKL 660
Query: 2715 WDRSVPGFKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSE--VEQSP----DIAPSE 2554
WD + K V+SRDV+F+E E ++S S +K +A SE VEQ+ ++A E
Sbjct: 661 WD--IVNEKKVISRDVVFDERE------AISISLAKPSVADSEAQVEQNEQGNDEVAIEE 712
Query: 2553 VEQLPEMDPLNDVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRV 2374
E + P E + G N+ + + + D+ +R
Sbjct: 713 PEH--QQQPTVMAQVEQSPQRGQNSPIPQA--------------PESFKRSIALDKPKRN 756
Query: 2373 VKPPEKFNEFQMSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTW 2194
KP ++F F+ S+ +P +Y +AI+S S W+ AM EM SLH N W
Sbjct: 757 RKPIQRFG-FEPEEDVSRAL-SISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKNSVW 814
Query: 2193 MLVPKPDSISVVDCKWLFKVK---HEAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFT 2023
LVPKP +V CKW+F+ K HE ++ +KARLVAKG++QKEG+DY EIF+PVVK T
Sbjct: 815 ELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHT 874
Query: 2022 TVRIMLALVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYG 1843
++R++L++ AQ++ E++QMDV TAFLHGDL++ IYM QPEGFV++ N VC LKK+LYG
Sbjct: 875 SIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYG 934
Query: 1842 LKQSPRQWNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSI 1663
LKQSPRQW FD M + + R YD C+Y+ + I LL+YVDDML+ + I
Sbjct: 935 LKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQI 994
Query: 1662 KHVQNCLCDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVN 1483
+ ++ L F MKDLG A+KILG+ I R+R + L+Q Y+ KIL +F+M+ AK V+
Sbjct: 995 QKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAEAKVVS 1054
Query: 1482 VPLASHFVLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSN 1303
+PLA+HF LS EQ P + E++ MK VPY++A+G +MY MICTRPD+A +S++S+YMSN
Sbjct: 1055 IPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSN 1114
Query: 1302 PGMPHWEALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTL 1123
PG HWEA+KW+ +YLK+T +G+ F + + G+VDS+ A D D R+ST YVFT
Sbjct: 1115 PGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEACVAGFVDSDFAGDLDRRRSTAGYVFTC 1174
Query: 1122 CGSCISWKSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSA 943
G +SWK+ LQ + ALS A KEAIWL GL ++ + +V DSQSA
Sbjct: 1175 GGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSA 1234
Query: 942 IQLCKNPVFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
I L KN VFH RTKHI+ R+H IRD V+ G++ EK+HTD N AD TK + V+K
Sbjct: 1235 IHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVEK 1289
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 881 bits (2276), Expect = 0.0
Identities = 500/1251 (39%), Positives = 713/1251 (56%), Gaps = 14/1251 (1%)
Frame = -1
Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEY--GRDSITLDIV 4288
++ NID F +++ D+++ D+ A++LL A+P++++ LK ++Y G+ +TLD V
Sbjct: 133 VEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSILTLDEV 192
Query: 4287 VNALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXX 4108
A+ SKE EL ++ KS + + A G
Sbjct: 193 AAAIYSKELELG--SVKKSIK--VQAEG-------LYVKDKNENKGKGEQKGKGKGKKGK 241
Query: 4107 XXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSD--MPXXXXX 3934
C++CGE GH+ C + + V GE+ G + + + +
Sbjct: 242 SKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVK-GESSGGKGNLAEAAGYYVSEALSS 300
Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASG 3754
+D+GCS+HM+ R F + E G V + N+ V G+G I +K + G
Sbjct: 301 TEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDG 360
Query: 3753 NVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICH 3574
L NVR++PD+ NLLS E G + + G+++I G+ V+ + + LY+ +
Sbjct: 361 LTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTGRRYDTLYLLN 420
Query: 3573 AESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLG 3394
+ V V DD T LWH+RL HMS K +EIL + G K K+SS+ C+ C+ G
Sbjct: 421 WKPVASESLAVVKRADD-TVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYG 479
Query: 3393 KQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVP-SHGGNRYFLSVIDDYSRKVWTFL 3217
K F ++ K LEY+H+D+WG VP S G +YF+S+IDD++RKVW +
Sbjct: 480 KAKRKSFSLAHHDTKEK----LEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYF 535
Query: 3216 LKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYT 3037
+K K + ++F +W L+ENQT +++K LRTDNGLEFCNKL D C GI RH+T YT
Sbjct: 536 MKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYT 595
Query: 3036 PQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVF 2857
PQQNGV ERMNRT++EKVR + GL KRFW EA HT L+N++PS L + P+ +
Sbjct: 596 PQQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKW 655
Query: 2856 SGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVS 2677
SG P S L+ +GC AFVH KLEPR++K V +GYP GVKGY++W + K VVS
Sbjct: 656 SGNPPVYSYLRRYGCVAFVHTDDGKLEPRAKKGVLIGYPVGVKGYKVW--ILDERKCVVS 713
Query: 2676 RDVIFNESEF--PCLTASVSTSNSKSDIAPS----EVEQSPDIAPSEVEQLPEMDPLNDV 2515
R++IF E+ + + S + D S ++E D+ +++ P +
Sbjct: 714 RNIIFQENAVYKDLMQRQENVSTEEDDQTGSYLEFDLEAERDVISGGDQEMVNTIPAPES 773
Query: 2514 HAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMS 2335
+ N DE+ DV+ +Y L RDR +R ++ P +F++
Sbjct: 774 PVVSTPTTQDTNDDEDS-----------DVNQSPLSYHLVRDRDKREIRAPRRFDDEDYY 822
Query: 2334 FFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVD 2155
A E + EP +YR+A N +W AM E++S N TW +V +P++ ++
Sbjct: 823 AEALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIG 882
Query: 2154 CKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFN 1984
C+W+FK K E RFKARLVAKG+ QKEGIDY EIFAPVVK ++R++L++VAQ +
Sbjct: 883 CRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQED 942
Query: 1983 WELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFD 1804
EL+Q+DV TAFLHG+L + IYM PEG+ N VCLL KALYGLKQ+P+QWN +FD
Sbjct: 943 LELEQLDVKTAFLHGELKEKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFD 1002
Query: 1803 KCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKM 1624
M+ + F +S YD C Y K + ++LLIYVDD+L+ S ++I ++ L F+M
Sbjct: 1003 NFMKEICFVKSAYDSCAYTKVLPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRFEM 1062
Query: 1623 KDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQ 1444
KDLG A+KILGM I+R+R L L+Q Y+ KIL ++M+ AKP PL +HF
Sbjct: 1063 KDLGAAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQAAT 1122
Query: 1443 SPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLL 1264
K + + MK VPYS+A+GS+MY M+ TRPD+AYPV I+SR+MS P HW +KW+L
Sbjct: 1123 EQKLIRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWVL 1182
Query: 1263 RYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQG 1084
RY+K T+ L + K S +VGY D++ A D D R+S T VFTL G+ ISWKS LQ
Sbjct: 1183 RYIKGTLKTRLCYKK-SSSFSIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQR 1241
Query: 1083 IVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRT 904
+VA S A KEAIWLKGLL + + K+ +F DSQSAI L KN V H+RT
Sbjct: 1242 VVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERT 1301
Query: 903 KHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKILN 751
KHI+V++HFIR+I+ G V+ KI T+ NPAD+ TK L V K FQ LN
Sbjct: 1302 KHIDVKYHFIREIISDGTVEVLKISTEKNPADIFTKVLAVSK---FQAALN 1349
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 877 bits (2266), Expect = 0.0
Identities = 495/1250 (39%), Positives = 720/1250 (57%), Gaps = 16/1250 (1%)
Frame = -1
Query: 4479 LDMSKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSIT 4300
L S + +I VF +++ D+ S + D+ ++LL ++P SY + + I RD +T
Sbjct: 113 LHESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELT 172
Query: 4299 LDIVVNALKSKERE--LKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXX 4126
L V AL+++E+ + S + RGR
Sbjct: 173 LAEVYEALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRG 232
Query: 4125 XXXXXXXXXXXKCYSCGEPGHYAKDC----SXXXXXXNEHANVASNGENF--GEMYVVTD 3964
C C + H+ ++C + + A+V ++ EN G+ VV
Sbjct: 233 KKF---------CKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVV-- 281
Query: 3963 VSDMPXXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKH-GYVSLANEKKCNVLG 3787
+D+ CSFH+ R+ FS+Y+ V++ V + ++ ++G
Sbjct: 282 --------FAGYVASHDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVG 333
Query: 3786 MGEICLKFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFK 3607
+G + +K G TLK+VRH+P + NL+S + L+ G + GV+K+ KGSLV
Sbjct: 334 IGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMI 393
Query: 3606 AEKQN-NLYICHAESVLDNVNCVNSVQDD--KTSLWHRRLGHMSNKGLEILEKNGMFGKD 3436
+ + NLY+ ++ +V +D+ KT+LWH RLGHMS G+ L K +
Sbjct: 394 GDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGC 453
Query: 3435 KLSSVPFCDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLS 3256
++ FC+ CV GK V+F S + + +L+Y+HAD+WG S PS GG RY L+
Sbjct: 454 TQGNMKFCEHCVFGKHKRVKFNTS----VHRTKGILDYVHADLWGPSRKPSLGGARYMLT 509
Query: 3255 VIDDYSRKVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCA 3076
+IDDYSRK W + LK+K D F++ K +IE QT K++K L TDNG EFC+ DD C
Sbjct: 510 IIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCR 569
Query: 3075 KYGIKRHKTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSP 2896
K GI RH T+PYTPQQNGV ERMNRT++ K RC+ ++KRFW EA +TA YL+NRSP
Sbjct: 570 KEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSP 629
Query: 2895 SVPLQGKCPEHVFSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRL 2716
S+PL K P ++SG D S L+VFGC A+ H KLEPR+ KC+FLGY GVKGY+L
Sbjct: 630 SIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKL 689
Query: 2715 WDRSVPGFKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPE 2536
W+ K +SR+VIFN EF S+ T D+ P ++ +VE +
Sbjct: 690 WNPETN--KTFMSRNVIFN--EFVMFNDSLPT-----DVIPGGSDEEQQYVSVQVEHV-- 738
Query: 2535 MDPLNDVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEK 2356
+D E + +D ++ H +V D+ ++ R R P
Sbjct: 739 ----------DDQETEIVGNDVNDTVQ-HSPSVLQPQDEPIAH----RRTKRSCGAPVRL 783
Query: 2355 FNEFQMSFFAFNVFESLDNS-EPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPK 2179
E M ++AF+ E ++N+ EP +Y EA+ S + +W++A++ EM SL N TW LV
Sbjct: 784 IEECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHL 843
Query: 2178 PDSISVVDCKWLFKVKH---EAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIM 2008
P V CKW+FK K +E RFK RLVAKGF+Q G+DY ++F+PVVK +++R
Sbjct: 844 PKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTF 903
Query: 2007 LALVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSP 1828
++V + EL+Q+DV T FLHG+L++ IYM QPEGF+ ++VC LK++LYGLKQSP
Sbjct: 904 FSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSP 963
Query: 1827 RQWNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQN 1648
RQW RFD M S FKRS +D C+Y K V+ PI+LL+YVDDML+ + + I ++
Sbjct: 964 RQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGS-PIYLLLYVDDMLIAAKSKEQITTLKK 1022
Query: 1647 CLCDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLAS 1468
L F MKDLG A+KILGM I R+R L L+Q SY++K+L +F+M +AKPV+ P+A
Sbjct: 1023 QLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAP 1082
Query: 1467 HFVLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPH 1288
HF LS Q D ++ M +VPYS+A+GS+MY M+C+ PD+++ +S++SRYM+NPG H
Sbjct: 1083 HFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEH 1142
Query: 1287 WEALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCI 1108
W+A++W+ RYL+ T + L F + G LVGYVDS+ A D D R+S T YVFT+ +
Sbjct: 1143 WKAVQWIFRYLRGTADACLKFGRIDKG--LVGYVDSDFAADLDKRRSLTGYVFTIGSCAV 1200
Query: 1107 SWKSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCK 928
SWK+ LQ +VA S A KE++WLKGL +E+C +D +F DSQSAI L K
Sbjct: 1201 SWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTK 1260
Query: 927 NPVFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
+ +FH+RTKHI++++H++RDIV +G +K KI NPADM TK +PV K
Sbjct: 1261 DQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAK 1310
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 872 bits (2253), Expect = 0.0
Identities = 500/1240 (40%), Positives = 706/1240 (56%), Gaps = 12/1240 (0%)
Frame = -1
Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYG--RDSITLDIV 4288
I+ NID F +++ D+++T D+ A++LL ++P+ ++ L+ ++YG R +++LD V
Sbjct: 133 IEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEV 192
Query: 4287 VNALKSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXX 4108
V A+ SKE EL G + + + +G+
Sbjct: 193 VAAIYSKELEL-----GSNKKSI---KGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSK 244
Query: 4107 XXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXXXX 3928
C+ CGE + + + S +NG E TD+
Sbjct: 245 SRSKKGCWICGESSNGSSNYSE------------ANGLYVSEALSSTDIH---------- 282
Query: 3927 XXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNV 3748
+D+GCS+HM+ R F + E G V + N+ V G+G I +K +G V
Sbjct: 283 --LEDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMV 340
Query: 3747 FTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHAE 3568
L NVR++P++ NLLS E G K G + I+ G V+ + LY+
Sbjct: 341 VRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWR 400
Query: 3567 SVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGKQ 3388
V + V QDD T LWHRRLGHMS K +++L K G+ K K+S + C+ C+ GK
Sbjct: 401 PVTEESLSVVKRQDD-TILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKA 459
Query: 3387 HHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVP-SHGGNRYFLSVIDDYSRKVWTFLLK 3211
+ F ++ K LEY+H+D+WG SVP S G +YF+S IDDY+RKV + LK
Sbjct: 460 KRIGFNLAQHDTREK----LEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLK 515
Query: 3210 NKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTPQ 3031
K + D+F +W L+ENQT K+IK LRTDNGLEFCN+ D+ C++ GI H+T YTPQ
Sbjct: 516 TKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQ 575
Query: 3030 QNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFSG 2851
QNGV ERMNRTL+EKVR + GL K+FW EA HT L+N++PS L + P+ +SG
Sbjct: 576 QNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSG 635
Query: 2850 KLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVSRD 2671
K P S L+ FGC AFVH KL PR++K + +GYP GVKGY++W + K VVSR+
Sbjct: 636 KSPIYSYLRRFGCIAFVHTDDGKLNPRAKKGILVGYPIGVKGYKIW--LLEEKKCVVSRN 693
Query: 2670 VIFNESEFPCLTASVSTSNSKSDIAPSEVEQSP------DIAPSEVEQLPEMDPLNDVHA 2509
VIF E+ AS D E E P D+ EV DP+ + +
Sbjct: 694 VIFQEN------ASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQS 747
Query: 2508 ENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMSFF 2329
+ EG ++ ET D+ +YQL RDR RR ++ P +F++
Sbjct: 748 PFNPSPATTQTYSEG---VNSET---DIIQSPLSYQLVRDRDRRTIRAPVRFDDEDYLAE 801
Query: 2328 AFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCK 2149
A E EP Y EA +S N +W AM EM S N TW +V +P V+ +
Sbjct: 802 ALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSR 861
Query: 2148 WLFKVK---HEAESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 1978
W++K K E RFKARLVAKG+ Q++GIDY EIFAPVVK ++RI++++VAQ + E
Sbjct: 862 WIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLE 921
Query: 1977 LKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKC 1798
L+Q+DV TAFLHG+L + IYM PEG+ + + VCLL K+LYGLKQ+P+QWN +F+
Sbjct: 922 LEQLDVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAY 981
Query: 1797 MQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKD 1618
M + F RS+YD C Y K++ ++LL+YVDDML+ + + I ++ L F MKD
Sbjct: 982 MSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKD 1041
Query: 1617 LGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSP 1438
LG A++ILGM I+RNR+++TL L+Q Y+ KIL ++M+ +K V PL +H +
Sbjct: 1042 LGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVE 1101
Query: 1437 KNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRY 1258
K + + + MK +PYS+A+GS+MY MI TRPD+AYPV I+SRYMS P HW +KW+LRY
Sbjct: 1102 KQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRY 1161
Query: 1257 LKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIV 1078
+K ++ L + + SD K+VGY D+++A +D R+S T VFTL GS ISWKS Q +V
Sbjct: 1162 IKGSLGTKLQYKRSSD-FKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVV 1220
Query: 1077 ALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKH 898
ALS A KEA+W+KGLL E + K+ +F DSQSAI L KN V H+RTKH
Sbjct: 1221 ALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKH 1280
Query: 897 IEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
I+VR+ +IRDI+ G KI T+ NPAD+ TK +PV K
Sbjct: 1281 IDVRYQYIRDIIANGDGDVVKIDTEKNPADIFTKIVPVNK 1320
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 864 bits (2233), Expect = 0.0
Identities = 491/1241 (39%), Positives = 703/1241 (56%), Gaps = 13/1241 (1%)
Frame = -1
Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVN 4282
ID+N D F +++ ++ S + ++ A+++LN++P SY LK ++YG ++++ VV+
Sbjct: 143 IDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSYIQLKHTLKYGNKTLSVQDVVS 202
Query: 4281 ALKSKERELKH----CNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXX 4114
+ KS EREL S+ RGRP
Sbjct: 203 SAKSLERELSEQKETIRAPASTALYTAERGRPQTKNTQGQGKGRGRSNSKSRLT------ 256
Query: 4113 XXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDMPXXXXX 3934
C+ C + GH KDC E G+ V+T+
Sbjct: 257 --------CWFCKKEGHVKKDCYAGKRKL--------ENEGQGKAGVITEKLVYSEALSM 300
Query: 3933 XXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASG 3754
+DSGC++HM+ + FS + E + + L ++ G G + + G
Sbjct: 301 YDQEAKDKWVIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTVESKGSGTVKVNTHGG 360
Query: 3753 NVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICH 3574
++ LKNVR VP+L NL+S L+ +G + + G G ++ K + N LY+
Sbjct: 361 SIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEGGDGKVRFYKENKTALCGNLVNGLYVLD 420
Query: 3573 AESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLG 3394
+V+ N NC ++KT LWH RLGHMS ++IL + G+ K + + FC++CV+G
Sbjct: 421 GHTVV-NENCNVEGSNEKTELWHCRLGHMSLNNMKILAEKGLLEKKDIKELSFCENCVMG 479
Query: 3393 KQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFLL 3214
K + F + VL Y+HAD+WG +YFLS+IDD SRKVW L
Sbjct: 480 KSKKLSFNVGK----HITDEVLGYIHADLWG---------KQYFLSIIDDKSRKVWLMFL 526
Query: 3213 KNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTP 3034
K K + + F +WK L+ENQ KK+K LRTDNGLEFCN D+ C + GI+RH+T YTP
Sbjct: 527 KTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNLKFDEFCKQNGIERHRTCTYTP 586
Query: 3033 QQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFS 2854
QQNGV +RMNRTL+EKVRCL GL + FW EA TA YLVNRSP+ + PE ++
Sbjct: 587 QQNGVAKRMNRTLMEKVRCLLNESGLEEVFWAEAAATAAYLVNRSPASAVDHNVPEELWL 646
Query: 2853 GKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVSR 2674
K P +L+ FGC A+VH KL+PR+ K VFLGYP+G KGY++W + K V+SR
Sbjct: 647 DKKPGYKHLRRFGCIAYVHLDQGKLKPRALKGVFLGYPQGTKGYKVW--LLDEEKCVISR 704
Query: 2673 DVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAENDYE 2494
+++FNE++ DI S + DI S++E E H E
Sbjct: 705 NIVFNENQV------------YKDIRESSEQSVKDI--SDLEGYNEFQVSVKEHGECSKT 750
Query: 2493 LGVN----NHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMSFFA 2326
GV + + + + E + +D SNYQ RDR RR PP+K ++ A
Sbjct: 751 GGVTIEEIDQESDSENSVTQEPLIASID--LSNYQSARDRERRAPNPPQKLADYTHFALA 808
Query: 2325 FNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCKW 2146
+ E +++ EP Y +A K ++ ++W MK E++SL N TW +V P V+ C+W
Sbjct: 809 LVMAEEIESEEPQCYHDAKKDKHWIKWNGGMKEEIDSLLKNGTWDIVEWPKEQKVISCRW 868
Query: 2145 LFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWEL 1975
LFK+K E+ R+KARLVA+GFTQ++GIDY E+FAPVVK ++RI+++ V + + EL
Sbjct: 869 LFKLKPGIPGVEAQRYKARLVARGFTQQKGIDYEEVFAPVVKHISIRILMSAVVKDDMEL 928
Query: 1974 KQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKCM 1795
+QMDV T FLHG+LD+ +YM+QPEGF + + VCLLKK+LYGLKQ+PRQWN +F M
Sbjct: 929 EQMDVKTTFLHGELDQVLYMEQPEGFEVNPEKDQVCLLKKSLYGLKQAPRQWNKKFHAFM 988
Query: 1794 QSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKDL 1615
SL+F RS +D C+Y K+V+ ++LL+YVDDMLL + I ++ L F+MKD+
Sbjct: 989 LSLQFARSEHDSCVYVKEVNPGEFVYLLLYVDDMLLAAKSKSEISKLKEALSLKFEMKDM 1048
Query: 1614 GDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSK--EQS 1441
G A +ILG++I+RNRK+ TL L+Q YV+K++ +F M++AK V+ P+ +HF L+ ++
Sbjct: 1049 GAASRILGIDIIRNRKEGTLRLSQTRYVDKVIQRFRMADAKVVSTPMGAHFKLTSLIDEI 1108
Query: 1440 PKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLR 1261
D E+ VPYS+A+GSVMY MI T PD+AY + ++SR+MS PG
Sbjct: 1109 GSVDPEV-----VPYSSAVGSVMYAMIGTIPDVAYAMGLVSRFMSRPGA----------- 1152
Query: 1260 YLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGI 1081
L++ GY DS++A D D R+S + YVFT+ G+ +SWKS LQ +
Sbjct: 1153 -----------------NLEVQGYCDSDHAADLDKRRSISGYVFTVGGNTVSWKSSLQHV 1195
Query: 1080 VALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTK 901
VALS A KEAIW++GLL ++ K A V+ DSQSAI L KN FHDRTK
Sbjct: 1196 VALSSTQAEFIALTEAVKEAIWIRGLLEDMGLQPKPATVWCDSQSAICLSKNNAFHDRTK 1255
Query: 900 HIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
H+EV+F+FIRDI++ G VK KIHT VNPADM TKC+PVKK
Sbjct: 1256 HVEVKFYFIRDIIEAGEVKVRKIHTSVNPADMLTKCIPVKK 1296
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 864 bits (2232), Expect = 0.0
Identities = 498/1255 (39%), Positives = 717/1255 (57%), Gaps = 19/1255 (1%)
Frame = -1
Query: 4461 IDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVN 4282
++EN++ F KL+ D+++ D+ A+VLL ++P+ ++ LK ++Y + ++ L+ + +
Sbjct: 138 MEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKTTLHLEEITS 197
Query: 4281 ALKSKERELKHCNI---GKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXX 4111
A++SK EL S + RGR
Sbjct: 198 AIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKNKSRSKSKGAGKT------- 250
Query: 4110 XXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDM--PXXXX 3937
C+ CG+ GH+ K C N+ + + GE VTD + +
Sbjct: 251 -------CWICGKEGHFKKQC-YVWKERNKQGSTSERGEASTVTARVTDAAALVVSRALL 302
Query: 3936 XXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFAS 3757
+D+GCSFHM+ ++ +++E G V + N+ V G+G++ +K
Sbjct: 303 GFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNED 362
Query: 3756 GNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYIC 3577
G+ L +VR++P++ NL+S LED G + KG++ I K L V +K++ LY
Sbjct: 363 GSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFL 422
Query: 3576 HAESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVL 3397
++ N ++ + D+TSLWH RLGH+ KGL++L G K+ + S
Sbjct: 423 QGTTLAGEANVIDK-EKDETSLWHSRLGHIGAKGLQVLVSKGHLDKNIMIS--------F 473
Query: 3396 GKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVP-SHGGNRYFLSVIDDYSRKVWTF 3220
G HV L+Y+H+D+WG ++VP S G +YF++ IDD++R+ W +
Sbjct: 474 GAAKHVT------------KDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIY 521
Query: 3219 LLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPY 3040
++ K + +F +WKT IENQ KK+K L TDNGLEFCN+ D C K G+ RH+T Y
Sbjct: 522 FIRTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAY 581
Query: 3039 TPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHV 2860
TPQQNGV ERMNRT++ KVRC+ GL K+FW EA TA +L+N+SPS ++ PE
Sbjct: 582 TPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEK 641
Query: 2859 FSGKLPDLSNLKVFGCAAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVV 2680
++G PD LK FG A++H KL PR++K +FLGYP+GVK +++W + K VV
Sbjct: 642 WTGHPPDYKILKKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVW--LLEDRKCVV 699
Query: 2679 SRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAEND 2500
SRD++F E++ S+ D +EVE++ E++ L D EN
Sbjct: 700 SRDIVFQENQM--YKELQKNDMSEEDKQLTEVERTL----IELKNLSADD-------ENQ 746
Query: 2499 YELGVNNHDEEGLL------EIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQM 2338
E G N++ E+ + E D DD NY L RDR RR ++ P++F E
Sbjct: 747 SEGGDNSNQEQASTTRSASKDKQVEETDSD-DDCLENYLLARDRIRRQIRAPQRFVEEDD 805
Query: 2337 SF--FAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSIS 2164
S FA + E + EP +Y EA++S +W A EM+S+ N TW ++ KP+
Sbjct: 806 SLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKR 865
Query: 2163 VVDCKWLFKVKHE---AESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVA 1993
V+ CKW+FK K E R+KARLVAKGF+Q+EGIDY EIF+PVVK ++R +L++V
Sbjct: 866 VIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVV 925
Query: 1992 QFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNI 1813
QF+ EL+Q+DV TAFLHG+LD+ I M QPEG+ D + VCLLKK+LYGLKQSPRQWN
Sbjct: 926 QFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQ 985
Query: 1812 RFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDN 1633
RFD M + ++RS Y+ C+Y + ++ I+LL+YVDDML+ S I+ ++ L
Sbjct: 986 RFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNRE 1045
Query: 1632 FKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVL- 1456
F+MKDLG ARKILGM I RNR+Q L L+Q YV +L F M +K PL +HF L
Sbjct: 1046 FEMKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLR 1105
Query: 1455 -SKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEA 1279
+ E++ D+E MK VPY NAIGS+MY MI +RPD+AYPV ++SR+MS P HW+A
Sbjct: 1106 AANEKTLARDAEY--MKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQA 1163
Query: 1278 LKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWK 1099
+KW++RY+K T + L F K D ++ GY DS+ A D D R+S T +VFT G+ ISWK
Sbjct: 1164 VKWVMRYMKGTQDTCLRFKK-DDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWK 1222
Query: 1098 SQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPV 919
S LQ +VALS A KEAIWL+GL +E+ V DSQSAI L KN V
Sbjct: 1223 SGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSV 1282
Query: 918 FHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLVSFQKIL 754
H+RTKHI+VR+HFIR+ + G ++ KI T NPAD+ TK +PV KL K+L
Sbjct: 1283 HHERTKHIDVRYHFIREKIADGEIQVVKISTTWNPADIFTKTVPVSKLQEALKLL 1337
>emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]
Length = 1261
Score = 861 bits (2225), Expect = 0.0
Identities = 471/1047 (44%), Positives = 648/1047 (61%), Gaps = 5/1047 (0%)
Frame = -1
Query: 3900 DSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNVFTLKNVRHV 3721
DSG SFH +P R + NY G V LA+ +V+G+G++ + +G+V+ L+ VR++
Sbjct: 252 DSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRYI 311
Query: 3720 PDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHAESVLDNVNCV 3541
PDL NL+S L+D G + G K+ KG+ V+ + +K + LY+ D +
Sbjct: 312 PDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTDTLYMTSCPR--DTIAVA 369
Query: 3540 NSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGKQHHVQF-PIS 3364
++ D TSLWHRRLGHMS K +++L G + K C+SC+LGKQ V F
Sbjct: 370 DASTD--TSLWHRRLGHMSEKWMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTG 427
Query: 3363 SVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFLLKNKSDVLDEF 3184
P K LE +H D+WG S V S GG+RY+++ I+D SRKVW + LKNKSDV F
Sbjct: 428 RTPKAEK----LELVHTDLWGPSPVASLGGSRYYITFINDSSRKVWVYFLKNKSDVFVTF 483
Query: 3183 QKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTPQQNGVTERMN 3004
+KWK ++E +TG K+K LR+DNG E+ + + C GI+ KT+P TPQQNGV ERMN
Sbjct: 484 KKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCXAQGIRMEKTIPGTPQQNGVAERMN 543
Query: 3003 RTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFSGKLPDLSNLK 2824
RTL E+ R +R+ GL K FW +A+ TA YL+NR PSVP++ + PE V+SGK S+LK
Sbjct: 544 RTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLK 603
Query: 2823 VFGCAAFVHQKGD---KLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVVSRDVIFNES 2653
VFGC ++VH D KL+ +S+ C F+GY + GYR WD K++ SR+VIFNE
Sbjct: 604 VFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQ--NRKIIRSRNVIFNEQ 661
Query: 2652 EFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPLNDVHAENDYELGVNNHD 2473
++V++ ++ D SE ++ S V++ E D
Sbjct: 662 VMYKDRSTVTSDVTEIDQKKSEFVNLDELTESTVQKGGEEDK------------------ 703
Query: 2472 EEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMSFFAFNVFESLDNSE 2293
E V+ VD ++ RS R +PP++++ N D E
Sbjct: 704 ---------ENVNSQVDLSTPIVEVR--RSSRNTRPPQRYSP------VLNYLLLTDGGE 746
Query: 2292 PNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVDCKWLFKVKHEAE-S 2116
P Y EA++ ENS +W AMK EM+SL N+TW L P + KW++++K+E + S
Sbjct: 747 PECYDEALQDENSSKWELAMKDEMDSLLGNQTWZLTELPVGKKALHNKWVYRIKNEHDGS 806
Query: 2115 TRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWELKQMDVTTAFLHGD 1936
R+KARLV KGF QKEGIDYTEIF+PVVK +T+R++L +VA N L+Q+DV TAFLHGD
Sbjct: 807 KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGD 866
Query: 1935 LDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDKCMQSLKFKRSVYDHC 1756
L++ +YM QPEGF+ N VC L+K+LYGLKQ+PRQW +FD M + FKR DHC
Sbjct: 867 LEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHC 926
Query: 1755 LYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMKDLGDARKILGMNIVR 1576
YFK D+ I LL+YVDDML+ ++ I +++ L F MKDLG A++ILGM I+R
Sbjct: 927 CYFKSFDNSY-IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIR 985
Query: 1575 NRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQSPKNDSEMNAMKKVPY 1396
++ TL L+Q YV+K+L +F+M+ AKPV+ PL SHF LSKEQSPK + E + M KVPY
Sbjct: 986 DKANGTLKLSQSEYVKKVLXRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDXMSKVPY 1045
Query: 1395 SNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLRYLKSTMNVGLHFSKC 1216
++AIGS+MY M+CTR DIA+ V ++SR+MS PG HWEA+KW+LRYLK +++ L F+
Sbjct: 1046 ASAIGSLMYAMVCTRLDIAHAVGVVSRFMSXPGKQHWEAVKWILRYLKGSLDTCLCFTGA 1105
Query: 1215 SDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGIVALSXXXXXXXXXXX 1036
S LKL GYVD++ A D D+RKSTT +VFTL G+ ISW S LQ IV LS
Sbjct: 1106 S--LKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATE 1163
Query: 1035 AFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTKHIEVRFHFIRDIVDK 856
A KE IWL G L E+ + I+ SDSQSAI L KN FH ++KHI+ ++HFIR +V+
Sbjct: 1164 AGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVED 1223
Query: 855 GIVKFEKIHTDVNPADMGTKCLPVKKL 775
+V EKI NPADM TK + ++KL
Sbjct: 1224 KLVILEKICGSKNPADMLTKGVTIEKL 1250
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 857 bits (2215), Expect = 0.0
Identities = 498/1241 (40%), Positives = 704/1241 (56%), Gaps = 16/1241 (1%)
Frame = -1
Query: 4452 NIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGRDSITLDIVVNALK 4273
+++VF L+ + + G K ++ A++LLN++P SY++L I +G+ +I L V +AL
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALL 180
Query: 4272 SKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXXXXXXXXXXXXXX 4093
E+ K + + RGR
Sbjct: 181 LNEKMRKKPE-NQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRN-------- 231
Query: 4092 KCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMY-----VVTDVSDMPXXXXXXX 3928
CY+C +PGH+ +DC E + N +N M VV +++
Sbjct: 232 -CYNCNQPGHFKRDCPNPRKGKGETSG-QKNDDNTAAMVQNNDNVVLFINE--EEECMHL 287
Query: 3927 XXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEICLKFASGNV 3748
VD+ S H +P R+LF Y G V + N + G+G+IC+K G
Sbjct: 288 SGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCT 347
Query: 3747 FTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEKQNNLYICHAE 3568
LK+VRHVPDL NL+S AL+ G E + ++ KGSLV+ K + LY +AE
Sbjct: 348 LVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAE 407
Query: 3567 SVLDNVNCVNSVQDD-KTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPFCDSCVLGK 3391
+N + QD+ LWH+R+GHMS KGL+IL K + K ++V CD C+ GK
Sbjct: 408 ICQGELN---AAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGK 464
Query: 3390 QHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSRKVWTFLLK 3211
QH V F SS ++ +L+ +++DV G + S GGN+YF++ IDD SRK+W ++LK
Sbjct: 465 QHRVSFQTSSERKLN----ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 520
Query: 3210 NKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRHKTVPYTPQ 3031
K V FQK+ L+E +TG+K+K LR+DNG E+ ++ ++ C+ +GI+ KTVP TPQ
Sbjct: 521 TKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 580
Query: 3030 QNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGKCPEHVFSG 2851
NGV ERMNRT++EKVR + L K FWGEA+ TA YL+NRSPSVPL + PE V++
Sbjct: 581 HNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTN 640
Query: 2850 KLPDLSNLKVFGCAAFVH---QKGDKLEPRSRKCVFLGYPEGVKGYRLWDRSVPGFKVVV 2680
K S+LKVFGC AF H ++ KL+ +S C+F+GY + GYRLWD KV+
Sbjct: 641 KEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKK--KVIR 698
Query: 2679 SRDVIFNESEFPCLTASVSTSNSKSDIAPSEV-----EQSPDIAPSEVEQLPEMDPLNDV 2515
SRDV+F ESE TA+ + K+ I P+ V +P A S +++ E
Sbjct: 699 SRDVVFRESEVR--TAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGE 756
Query: 2514 HAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEFQMS 2335
E +L +EG+ E+ + T ++ + R SRR P ++
Sbjct: 757 VIEQGEQL------DEGVEEVEHPTQGEEQHQPLRRSERPRVESRRY--PSTEYVLIS-- 806
Query: 2334 FFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSISVVD 2155
D+ EP S +E + + + AM+ EM SL N T+ LV P +
Sbjct: 807 ----------DDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLK 856
Query: 2154 CKWLFKVKHEAES--TRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNW 1981
CKW+FK+K + + R+KARLV KGF QK+GID+ EIF+PVVK T++R +L+L A +
Sbjct: 857 CKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDL 916
Query: 1980 ELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIRFDK 1801
E++Q+DV TAFLHGDL++ IYM+QPEGF + + VC L K+LYGLKQ+PRQW ++FD
Sbjct: 917 EVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDS 976
Query: 1800 CMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNFKMK 1621
M+S + ++ D C+YFK I LL+YVDDML++ I ++ L +F MK
Sbjct: 977 FMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMK 1036
Query: 1620 DLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSKEQS 1441
DLG A++ILGM IVR R L L+Q Y+E++L +F+M NAKPV+ PLA H LSK+
Sbjct: 1037 DLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMC 1096
Query: 1440 PKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKWLLR 1261
P E M KVPYS+A+GS+MY M+CTRPDIA+ V ++SR++ NPG HWEA+KW+LR
Sbjct: 1097 PTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILR 1156
Query: 1260 YLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSCISWKSQLQGI 1081
YL+ T L F LK GY D++ A D DNRKS+T Y+FT G ISW+S+LQ
Sbjct: 1157 YLRGTTGDCLCFGGSDPILK--GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214
Query: 1080 VALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVFHDRTK 901
VALS KE IWLK L E+ K +V+ DSQSAI L KN ++H RTK
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTK 1274
Query: 900 HIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
HI+VR+H+IR++VD +K KI T+ NPADM TK +P K
Sbjct: 1275 HIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNK 1315
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 848 bits (2192), Expect = 0.0
Identities = 485/1253 (38%), Positives = 710/1253 (56%), Gaps = 20/1253 (1%)
Frame = -1
Query: 4470 SKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYGR--DSITL 4297
S + ++I+ L + ++ K ++ A +LL ++P SY+ L I D++
Sbjct: 110 STSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHF 169
Query: 4296 DIVVNALKSKERELKH----CNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXXX 4129
D V A+ +E K+ K +E + RGR
Sbjct: 170 DDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIK 229
Query: 4128 XXXXXXXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHAN-------VASNGENFGEMYVV 3970
CY CG GH K+C +++ VAS ++ +Y
Sbjct: 230 -------------CYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSE 276
Query: 3969 TDVSDMPXXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVL 3790
S +DSG ++HM+P R+ F +YE + G V + N+ +
Sbjct: 277 AATSS------EGERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIA 330
Query: 3789 GMGEICLKFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVF 3610
G+G I LK G V ++ VRHV L NLLS L+D+G + G++K++KG+LVV
Sbjct: 331 GVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVM 390
Query: 3609 KAEK-QNNLYICHAESVLD-NVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKD 3436
KAEK +NLY+ +++ + + + + Q++ T +WH+RLGHMS +GL++L + +
Sbjct: 391 KAEKITSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGL 450
Query: 3435 KLSSVPFCDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLS 3256
K ++PFC+ CV+ KQH ++F + V SK +L+ +H+DVW S S GG RYF+S
Sbjct: 451 KTVNLPFCEHCVISKQHRLKF--ARVTTRSK--HILDLIHSDVW-ESPKLSLGGARYFVS 505
Query: 3255 VIDDYSRKVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCA 3076
IDDYSR++W + +K KSDV F+ +K IE +TGKKIK LRTDNG E+ + C
Sbjct: 506 FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCK 565
Query: 3075 KYGIKRHKTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSP 2896
+ GI R TV +TPQQNGV ERMNRTLLE+ R + T ++K FW EA+ TA Y++NRSP
Sbjct: 566 QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSP 625
Query: 2895 SVPLQGKCPEHVFSGKLPDLSNLKVFGCAAFV---HQKGDKLEPRSRKCVFLGYPEGVKG 2725
S + K P ++ GK D S+L VFGC +V Q+ KL+P+SRKC+FLGY + VKG
Sbjct: 626 STTIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKG 685
Query: 2724 YRLWDRSVPGFKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQ 2545
YRLWD + KVVVSRDV+F E+E + ST + + E + D + +E
Sbjct: 686 YRLWDPTAR--KVVVSRDVVFAENELQSEQKNDSTFKETAILQIEEKSKESDSSEAE--- 740
Query: 2544 LPEMDPLNDVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKP 2365
+H E DDV++G R +R+ KP
Sbjct: 741 -----------------------------SVHEEQEPDDVNNG------VRRSTRQTQKP 765
Query: 2364 PEKFNEFQMSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLV 2185
+ + A+ + + EP+++ EA+ ++ +W+ A+ EM +L NKTW LV
Sbjct: 766 SWQSDYVMTGHDAYCLI--AEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELV 823
Query: 2184 PKPDSISVVDCKWLFKVKHEA--ESTRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRI 2011
P + KW++K+K + + R++ARLV KG+ QKEGID+ EIF+PVV+ TT+R+
Sbjct: 824 ELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRV 883
Query: 2010 MLALVAQFNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQS 1831
+LA+ A + L+Q+DV TAFLHG+L++ IYM QPEGF + N VC L K+LYGLKQ+
Sbjct: 884 VLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQA 943
Query: 1830 PRQWNIRFDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQ 1651
PR W RFD + SL + R DHC Y+K D I LL+YVDD+L++ P ++ ++
Sbjct: 944 PRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDILVVGPNKDRVQELK 1003
Query: 1650 NCLCDNFKMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLA 1471
L F MKDLG A KILGM I R+RK + L+Q +Y+ K+L +F+M + KP++ PL
Sbjct: 1004 AQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLP 1063
Query: 1470 SHFVLSKEQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMP 1291
+F LS SP N++E M +VPY++A+GS+MY MICTRPDIA V ++SR+M++PG
Sbjct: 1064 VNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKE 1123
Query: 1290 HWEALKWLLRYLKSTMNVGLHFSKCSDGLKLVGYVDSNNANDRDNRKSTTSYVFTLCGSC 1111
HW A+K ++RY+K T V + F L + GYVDS+ A D D RKSTT YVFTL G
Sbjct: 1124 HWNAVKRIMRYIKGTSGVAVCFG--GSELTVRGYVDSDFAGDHDKRKSTTGYVFTLTGGA 1181
Query: 1110 ISWKSQLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLC 931
+SW S+LQ +VALS A KEAIW++ L+ E+ H + V+ DSQSA+ +
Sbjct: 1182 VSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIA 1241
Query: 930 KNPVFHDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKKLV 772
+NP FH RTKHI V++HF+R++V++G V +KIHT+ N AD+ TK + K V
Sbjct: 1242 RNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFV 1294
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 848 bits (2190), Expect = 0.0
Identities = 496/1246 (39%), Positives = 694/1246 (55%), Gaps = 15/1246 (1%)
Frame = -1
Query: 4470 SKDIDENIDVFTKLLQDIKSTGDKNIDDYSAVVLLNAIPQSYNDLKAAIEYG--RDSITL 4297
S + E+++ L + S K A +LL ++P SY+ L + D +
Sbjct: 111 STSVTEHLNTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVF 170
Query: 4296 DIVVNAL-----KSKERELKHCNIGKSSERVMHARGRPXXXXXXXXXXXXNEXXXXXXXX 4132
D V A+ + K +E + N+ + +E + RGR
Sbjct: 171 DDVAAAVLEEESRRKNKEDRQVNL-QQAEALTVMRGRSTERGQSSGRGRSKSSKKNLT-- 227
Query: 4131 XXXXXXXXXXXXXKCYSCGEPGHYAKDCSXXXXXXNEHANVASNGENFGEMYVVTDVSDM 3952
CY+CG+ GH KDC N NVAS ++ + ++
Sbjct: 228 --------------CYNCGKKGHLKKDCWNLAQNSNPQGNVASTSDDGSALCCEASIA-- 271
Query: 3951 PXXXXXXXXXXXXXXXVDSGCSFHMSPFRNLFSNYEEVKHGYVSLANEKKCNVLGMGEIC 3772
+DSG ++HM+ + F +YE + G V ++ ++G+G I
Sbjct: 272 ----REGRKRFADIWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIK 327
Query: 3771 LKFASGNVFTLKNVRHVPDLCYNLLSCAALEDVGLEGKWGKGVMKIMKGSLVVFKAEK-Q 3595
LK G V T+++VRHV L NLLS L++ + + KGVMKI +G+LVV K EK
Sbjct: 328 LKMYDGTVQTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIA 387
Query: 3594 NNLYICHAESVLDNVNCVNSVQDDKTSLWHRRLGHMSNKGLEILEKNGMFGKDKLSSVPF 3415
NLY+ E++ + V + D T LWH++LGHMS++G++IL + + S+P
Sbjct: 388 ANLYMLKGETLQEAEASVAACSPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPL 447
Query: 3414 CDSCVLGKQHHVQFPISSVPNMSKCTSVLEYLHADVWGHSSVPSHGGNRYFLSVIDDYSR 3235
C+ C+ KQH ++F S+ S+ VLE +H+DVW + VPS GG +YF+S IDDYSR
Sbjct: 448 CEHCITSKQHRLKFSTSN----SRGKVVLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSR 502
Query: 3234 KVWTFLLKNKSDVLDEFQKWKTLIENQTGKKIKALRTDNGLEFCNKLLDDMCAKYGIKRH 3055
+ W + +K KSDV F+ +K +E +GKKIK RTDNG E+ ++ DD C K GIKR
Sbjct: 503 RCWVYPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQ 562
Query: 3054 KTVPYTPQQNGVTERMNRTLLEKVRCLRVTGGLSKRFWGEALHTATYLVNRSPSVPLQGK 2875
TV YTPQQNGV ERMNRTLLE+ R + GL K FW EA++TA YLVNR+PS ++ K
Sbjct: 563 FTVAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELK 622
Query: 2874 CPEHVFSGKLPDLSNLKVFGC---AAFVHQKGDKLEPRSRKCVFLGYPEGVKGYRLWDRS 2704
P +++GK D SNL +FG A + Q+ KL+P+SRKC FLGY +GVKGYRLWD +
Sbjct: 623 TPMEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLWDPT 682
Query: 2703 VPGFKVVVSRDVIFNESEFPCLTASVSTSNSKSDIAPSEVEQSPDIAPSEVEQLPEMDPL 2524
KVV+SRDVIF E + ++ S ++ P+ +VE+ E D
Sbjct: 683 --AHKVVISRDVIFVEDRL-----------QRGEVDDSTEKEKPETTQIQVEEEFEQD-- 727
Query: 2523 NDVHAENDYELGVNNHDEEGLLEIHYETVHDDVDDGASNYQLTRDRSRRVVKPPEKFNEF 2344
E H++ + +S TR R +P +
Sbjct: 728 ----------------------SSEAEPAHEEPEPESSGAPTTRQSDREKRRPTWHSDYV 765
Query: 2343 QMSFFAFNVFESLDNSEPNSYREAIKSENSVEWLNAMKSEMNSLHANKTWMLVPKPDSIS 2164
A+ + ++ EP++++EAI S + +W AM+ E+ +LH N TW LVP P
Sbjct: 766 MEGNVAYCLL--TEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRK 823
Query: 2163 VVDCKWLFKVKHEAES--TRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQ 1990
+ KW+FK+K + R++ARLV KG+ QKEGID+ EIF+PVV+ TTVR++LA+ A
Sbjct: 824 PIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCAT 883
Query: 1989 FNWELKQMDVTTAFLHGDLDKPIYMKQPEGFVDSKNPNHVCLLKKALYGLKQSPRQWNIR 1810
FN L+Q+DV TAFLHGDL++ IYM QPEGF D +N N VC L K+LYGLKQ+PR W R
Sbjct: 884 FNLHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKR 943
Query: 1809 FDKCMQSLKFKRSVYDHCLYFKDVDSPVPIFLLIYVDDMLLISPCVKSIKHVQNCLCDNF 1630
FD + L + R D C YFK + LL+YVDDML+ P I ++ L F
Sbjct: 944 FDSFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREF 1003
Query: 1629 KMKDLGDARKILGMNIVRNRKQSTLVLNQISYVEKILSKFSMSNAKPVNVPLASHFVLSK 1450
+MKDLG A KILGM I R+R + L+Q +Y++KILS+FSM + K ++ PL + +S
Sbjct: 1004 EMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPLPINLKVSS 1063
Query: 1449 EQSPKNDSEMNAMKKVPYSNAIGSVMYLMICTRPDIAYPVSILSRYMSNPGMPHWEALKW 1270
SP N+ M +VPY++A+GS+M+ MICTRPDIA V ++SRYM+NPG HW +K
Sbjct: 1064 SMSPSNEEGRMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKR 1123
Query: 1269 LLRYLKSTMNVGLHFSKCSDGLKLV--GYVDSNNANDRDNRKSTTSYVFTLCGSCISWKS 1096
+LRY+K T +V L C G + GYVDS+ A D D KSTT YVF + G +SW S
Sbjct: 1124 ILRYIKGTSDVAL----CYGGSDFIINGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVS 1179
Query: 1095 QLQGIVALSXXXXXXXXXXXAFKEAIWLKGLLSEVCHLDKNAIVFSDSQSAIQLCKNPVF 916
+LQ +VA S A KEAIWLK LL E+ H + +F DSQSA+ L +NP F
Sbjct: 1180 KLQAVVATSTTEAEYVAATQASKEAIWLKMLLEELGHKQEFVSLFCDSQSALHLARNPAF 1239
Query: 915 HDRTKHIEVRFHFIRDIVDKGIVKFEKIHTDVNPADMGTKCLPVKK 778
H RTKHI V++HFIR+ V +G V +KIHT N AD TK + V K
Sbjct: 1240 HSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVADFLTKIINVDK 1285