BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00018952
         (1332 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   522   e-145
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   521   e-145
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   521   e-145
ref|XP_007042502.1| DNA-directed RNA polymerase family protein [...   518   e-144
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   518   e-144
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   517   e-144
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   516   e-144
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   515   e-143
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   504   e-140
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   503   e-140
ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phas...   503   e-139
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype...   503   e-139
ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prun...   503   e-139
gb|AFK41039.1| unknown [Medicago truncatula]                          498   e-138
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   498   e-138
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   496   e-137
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   495   e-137
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   494   e-137
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps...   492   e-136
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...   491   e-136

>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Solanum tuberosum]
          Length = 319

 Score =  522 bits (1344), Expect = e-145
 Identities = 267/319 (83%), Positives = 288/319 (90%), Gaps = 3/319 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEG +YQRFPKIKIREVKDD+M+FELRETD SIANALRR+MIAEVPTIAIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFI+HRLGLVPLTSERAM+MRFSRDCDACDGDGQCEYCSVEF+LRVKC++DQTLDV
Sbjct: 61   VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSD--ASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKW 772
            TSK+L SSDHTVVPVD+SD  +S DNT ++GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLLSSDHTVVPVDYSDTSSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 771  SPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINPSG-QVYVHDAEAYTY 595
            SPAATVTFMYEP+IYIN           K + VESSPTKVF I+P   QV V D EAYTY
Sbjct: 181  SPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTY 240

Query: 594  DDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSA 415
            DDEV+KKAEAMGKPG+VEIHAKEDSFIFTVETTG VKASQL LNAIE+LKQKLDAVRLS 
Sbjct: 241  DDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSD 300

Query: 414  DTVEADEQFGELGAHMRGG 358
            DTVEAD+QFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
            gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
            RNA polymerases II, IV and V subunit 3-like [Citrus
            sinensis] gi|557524889|gb|ESR36195.1| hypothetical
            protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  521 bits (1343), Expect = e-145
 Identities = 267/319 (83%), Positives = 291/319 (91%), Gaps = 3/319 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            M+GA+YQRFPK+KIRE+KDDY +FELR+TD S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1    MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC +DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSD-ASLDNTD-SRGIIIVKLRRGQELALRAIARKGIGKDHAKW 772
            TSK+LYSSDH+VVPVDF D A  D+TD  RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 771  SPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTY 595
            SPAATVTFMYEP+I+IN           KQ +VESSPTKVFDI+P +GQVYV DAEAYTY
Sbjct: 181  SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240

Query: 594  DDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSA 415
            DDEVIKKAEAMGKPGLVEI+AKEDSFIFTVE+TG +KASQL LNAIE+LKQKLDAVRLS 
Sbjct: 241  DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300

Query: 414  DTVEADEQFGELGAHMRGG 358
            DTVEAD+QFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Solanum lycopersicum]
          Length = 319

 Score =  521 bits (1343), Expect = e-145
 Identities = 266/319 (83%), Positives = 288/319 (90%), Gaps = 3/319 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEG +YQRFPKIK+REVKDD+M+FELR+TD SIANALRR+MIAEVPTIAIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFI+HRLGLVPLTSERAM+MRFSRDCDACDGDGQCEYCSVEF+LRVKC++DQTLDV
Sbjct: 61   VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSDA--SLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKW 772
            TSK+L SSDHTVVPVD+SDA  S DNT ++GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLLSSDHTVVPVDYSDASSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 771  SPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINPSG-QVYVHDAEAYTY 595
            SPAATVTFMYEP+IYIN           K + VESSPTKVF I+P   QV V D EAYTY
Sbjct: 181  SPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTY 240

Query: 594  DDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSA 415
            DDEV+KKAEAMGKPG+VEIHAKEDSFIFTVETTG VKASQL LNAIE+LKQKLDAVRLS 
Sbjct: 241  DDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSD 300

Query: 414  DTVEADEQFGELGAHMRGG 358
            DTVEAD+QFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|XP_007042502.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
            gi|508706437|gb|EOX98333.1| DNA-directed RNA polymerase
            family protein [Theobroma cacao]
          Length = 318

 Score =  518 bits (1335), Expect = e-144
 Identities = 262/318 (82%), Positives = 288/318 (90%), Gaps = 2/318 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEG +YQRFPK+KIRE+KDDY +FELR+TD S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSD-ASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKWS 769
            TSK+LYSSDHTVVPVDF+D A  D+++ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLYSSDHTVVPVDFTDSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 768  PAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTYD 592
            PAATVTFMYEP+I+IN           KQ FVESSPT+VFDI+P + QV V D EAYTYD
Sbjct: 181  PAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYTYD 240

Query: 591  DEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSAD 412
            DEV+KKAEAMGKPGLVEI+AKEDSFIFTVE+TG +KASQL LNAIE+LKQKLDAVRLS D
Sbjct: 241  DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 300

Query: 411  TVEADEQFGELGAHMRGG 358
            TVEAD+QFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  518 bits (1335), Expect = e-144
 Identities = 264/318 (83%), Positives = 288/318 (90%), Gaps = 2/318 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEGA+YQRFP+IKIRE+KDDY +FELR+TD S+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQC+YCSVEFHLR KCI DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSDAS-LDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKWS 769
            TSK+LYSSDHTVVPVDFSD+S  D+++ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLYSSDHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 768  PAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTYD 592
            PAATVTFMYEPDI+IN           KQ +VESSPTKVFDI+P + QV V D EAYTYD
Sbjct: 181  PAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYD 240

Query: 591  DEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSAD 412
            +EVIKKAE+MGKPGLV I AKEDSFIFTVE+TG +KASQL LNAIEILKQKLDAVRLS D
Sbjct: 241  EEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSED 300

Query: 411  TVEADEQFGELGAHMRGG 358
            TVEAD+QFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like [Cicer
            arietinum]
          Length = 319

 Score =  517 bits (1332), Expect = e-144
 Identities = 264/319 (82%), Positives = 290/319 (90%), Gaps = 3/319 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEGA+Y R P++KIRE+KDDYM+FELR+TD S+ANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCI DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFS--DASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKW 772
            TSK+LYSSDHTVVPVDFS   +SL+++D RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLYSSDHTVVPVDFSADPSSLESSDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 771  SPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTY 595
            SPAATVTFMYEPDI+IN           K+++V+SSPT+VFDI+P + QV V D EAY+Y
Sbjct: 181  SPAATVTFMYEPDIHINEDLMESLTLEEKREWVDSSPTRVFDIDPVTQQVMVVDPEAYSY 240

Query: 594  DDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSA 415
            DDEVIKKAEAMGKPGLVEI AK+DSFIFTVE+TG VKASQL LNAIEILKQKLDAVRLS 
Sbjct: 241  DDEVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSE 300

Query: 414  DTVEADEQFGELGAHMRGG 358
            DTVEAD+QFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  516 bits (1329), Expect = e-144
 Identities = 263/318 (82%), Positives = 286/318 (89%), Gaps = 2/318 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEG +YQRFPKIKIREVKDDY +FELRETD S+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAMAMRFSRDCDACDGDGQCE+CSVEFHLR KC+ D+TLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 945  TSKELYSSDHTVVPVDFSDAS-LDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKWS 769
            TSK+L SSDHTVVPVDFSD+S  D+ D +GIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 768  PAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINPSG-QVYVHDAEAYTYD 592
            PAATVTFMYEP+I+IN           K  +VESSPTKVFDI+ S  QV V DAEAYTYD
Sbjct: 181  PAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYD 240

Query: 591  DEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSAD 412
            DEV+KKAEAMGKPGLVEI+AKEDSFIFTVE+TG +KASQL LNAI++LKQKLDAVRLS D
Sbjct: 241  DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSED 300

Query: 411  TVEADEQFGELGAHMRGG 358
            TVEAD+QFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  515 bits (1326), Expect = e-143
 Identities = 262/318 (82%), Positives = 286/318 (89%), Gaps = 2/318 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEG +YQRFPKIKIREVKDDY +FELRETD S+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC+ D+TLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 945  TSKELYSSDHTVVPVDFSDAS-LDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKWS 769
            TSK+L SSDHTVVPVDFSD+S  D+ D +GIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 768  PAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINPSG-QVYVHDAEAYTYD 592
            PAATVTFMYEP+I+IN           K  +VESSPTKVFDI+ S  QV V DAEAYTYD
Sbjct: 181  PAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYD 240

Query: 591  DEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSAD 412
            DEV+KKAEAMGKPGLVEI+AKEDSFIFTVE+TG +KASQL LNAI++LKQKLDAVRLS D
Sbjct: 241  DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSED 300

Query: 411  TVEADEQFGELGAHMRGG 358
            TVEAD+QFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  504 bits (1298), Expect = e-140
 Identities = 256/318 (80%), Positives = 285/318 (89%), Gaps = 2/318 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEG +YQRFP++KIRE++ DY++FELR+TD S+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1    MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLR +C +DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSDAS-LDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKWS 769
            TSKEL SSDHTVVPVDFSDAS  + ++ RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKELLSSDHTVVPVDFSDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 768  PAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTYD 592
            PAATVTFMYEPDI IN           K  +V+SSPTKVF+I+P +G+V V D EAYTYD
Sbjct: 181  PAATVTFMYEPDIRINEEMMDTLSLEDKAAWVDSSPTKVFEIDPNTGKVVVVDPEAYTYD 240

Query: 591  DEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSAD 412
            DEVIKKAEAMGKPGLV+I AKEDSFIFTVE+TG +KASQL LNAIEILKQKLDAVRLS D
Sbjct: 241  DEVIKKAEAMGKPGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEILKQKLDAVRLSED 300

Query: 411  TVEADEQFGELGAHMRGG 358
            TVEAD+QFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
            gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
            [Medicago truncatula] gi|355508950|gb|AES90092.1|
            DNA-directed RNA polymerase II subunit RPB3-A [Medicago
            truncatula]
          Length = 318

 Score =  503 bits (1295), Expect = e-140
 Identities = 257/319 (80%), Positives = 286/319 (89%), Gaps = 3/319 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEGA+Y R P++KIRE+KDDYM+FELR+TD S+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCI DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDF--SDASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKW 772
            +SK+L SSDHTV PVD    DAS++ +D RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  SSKDLISSDHTVTPVDVPGGDASIE-SDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 771  SPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTY 595
            SPAATVTFMYEPDI+IN           K+++V+SSPT+VFDI+P + QV V D EAY+Y
Sbjct: 180  SPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSY 239

Query: 594  DDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSA 415
            DDEVIKKAEAMGKPGL+EI AK+DSFIFTVE+TG VKASQL LN+IEILKQKLDAVRLS 
Sbjct: 240  DDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSE 299

Query: 414  DTVEADEQFGELGAHMRGG 358
            DTVEAD+QFGELGAHMRGG
Sbjct: 300  DTVEADDQFGELGAHMRGG 318


>ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
            gi|561031186|gb|ESW29765.1| hypothetical protein
            PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  503 bits (1294), Expect = e-139
 Identities = 254/318 (79%), Positives = 290/318 (91%), Gaps = 2/318 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEGA+Y R P++KIRE+KDDY +FELR+TD SIANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRVKC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSD-ASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKWS 769
            +SK+LYSSD +VVPVDFSD AS D+++SRG+IIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  SSKDLYSSDPSVVPVDFSDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 768  PAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTYD 592
            PAATVTFMYEP+I++N           K+++V+SSPT+VF+I+P + QV V D+EAY+YD
Sbjct: 181  PAATVTFMYEPEIHLNEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDSEAYSYD 240

Query: 591  DEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSAD 412
            DEVIKKAEAMGKPGLVEI A++DSFIFTVE+TG +K+SQL LNAIEILKQKLDAVRLS D
Sbjct: 241  DEVIKKAEAMGKPGLVEIIARQDSFIFTVESTGAIKSSQLVLNAIEILKQKLDAVRLSED 300

Query: 411  TVEADEQFGELGAHMRGG 358
            TVEAD+QFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
            [Populus trichocarpa] gi|550331423|gb|EEE87820.2|
            DNA-directed RNA polymerase II 36 kDa polypeptide B
            family protein [Populus trichocarpa]
          Length = 323

 Score =  503 bits (1294), Expect = e-139
 Identities = 261/323 (80%), Positives = 282/323 (87%), Gaps = 7/323 (2%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            ME  +YQRFPKIKIRE+KDDY++FELRETD S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1    MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLR KCI DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSDAS-----LDNTDS-RGIIIVKLRRGQELALRAIARKGIGKD 784
            TSK+LYSSDH V+PVDFSD S      D+T++ RGIIIVKLRRGQEL LRAIARKGIGKD
Sbjct: 121  TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKD 180

Query: 783  HAKWSPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAE 607
            HAKWSPAATVTFMYEP+I+IN           K  ++ESSPTKVFDI+  + QV V D E
Sbjct: 181  HAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPE 240

Query: 606  AYTYDDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAV 427
            AYTYDDEVIKKAEAMGK GL++I AKEDSFIFTVE+TG VKASQL LNAIEILKQKLDAV
Sbjct: 241  AYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAV 300

Query: 426  RLSADTVEADEQFGELGAHMRGG 358
            RLS DTVEAD+QFGELG HMRGG
Sbjct: 301  RLSDDTVEADDQFGELGVHMRGG 323


>ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
            gi|462397216|gb|EMJ03015.1| hypothetical protein
            PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  503 bits (1294), Expect = e-139
 Identities = 255/318 (80%), Positives = 285/318 (89%), Gaps = 2/318 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEG +YQR P++KIRE++DDYM+FELR+TD S+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1    MEGKSYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTS+RAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC +DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSD-ASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKWS 769
            TSK+L SSDHTVVPVDFSD A +++++ +GIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121  TSKDLLSSDHTVVPVDFSDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180

Query: 768  PAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTYD 592
            PAATVTFMYEPDI IN           K+ +VESSPTKVFD +P + +V V D EAYTYD
Sbjct: 181  PAATVTFMYEPDIRINEELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVMVVDPEAYTYD 240

Query: 591  DEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSAD 412
            DEVIKKAEAMGKPGLV+I AKEDSFIFTVE+TG VKASQL LNAIEILKQKLDAVRLS D
Sbjct: 241  DEVIKKAEAMGKPGLVDIIAKEDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSED 300

Query: 411  TVEADEQFGELGAHMRGG 358
            TVEAD+QFGELGAHMRGG
Sbjct: 301  TVEADDQFGELGAHMRGG 318


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score =  498 bits (1283), Expect = e-138
 Identities = 256/319 (80%), Positives = 285/319 (89%), Gaps = 3/319 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEGA+Y R P++KIRE+KDDYM+FELR+TD S+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVK I DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKRITDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDF--SDASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKW 772
            +SK+L SSDHTV PVD    DAS++ +D RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  SSKDLISSDHTVTPVDVPGGDASIE-SDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 771  SPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTY 595
            SPAATVTFMYEPDI+IN           K+++V+SSPT+VFDI+P + QV V D EAY+Y
Sbjct: 180  SPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSY 239

Query: 594  DDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSA 415
            DDEVIKKAEAMGKPGL+EI AK+DSFIFTVE+TG VKASQL LN+IEILKQKLDAVRLS 
Sbjct: 240  DDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSE 299

Query: 414  DTVEADEQFGELGAHMRGG 358
            DTVEAD+QFGELGAHMRGG
Sbjct: 300  DTVEADDQFGELGAHMRGG 318


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
            [Glycine max]
          Length = 319

 Score =  498 bits (1282), Expect = e-138
 Identities = 254/316 (80%), Positives = 284/316 (89%), Gaps = 2/316 (0%)
 Frame = -1

Query: 1299 GATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 1120
            G +Y R P++KIRE+KDDY +FELR+TD SIANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4    GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 1119 NDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDVTS 940
            NDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRVKC+ DQTLDVTS
Sbjct: 64   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 939  KELYSSDHTVVPVDFSDAS-LDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKWSPA 763
            K+LYSSD TV PVDFSD S  D+ ++RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSPA
Sbjct: 124  KDLYSSDPTVSPVDFSDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183

Query: 762  ATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTYDDE 586
            ATVTFMYEP+I+IN           K+++V+SSPT+VF+I+P + QV V DAEAYTYDDE
Sbjct: 184  ATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDE 243

Query: 585  VIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSADTV 406
            V+KKAEAMGKPGLVEI A++DSFIFTVE+TG VKASQL LNAIEILKQKLDAVRLS DTV
Sbjct: 244  VLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTV 303

Query: 405  EADEQFGELGAHMRGG 358
            EAD+QFGELGAHMRGG
Sbjct: 304  EADDQFGELGAHMRGG 319


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Glycine max]
          Length = 320

 Score =  496 bits (1276), Expect = e-137
 Identities = 253/317 (79%), Positives = 284/317 (89%), Gaps = 3/317 (0%)
 Frame = -1

Query: 1299 GATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSSVL 1120
            G +Y R P++KIRE+KDDY +FELR+TD SIANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4    GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 1119 NDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDVTS 940
            NDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRVKC+ DQTLDVTS
Sbjct: 64   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 939  KELYSSDHTVVPVDFSDASLDNT--DSRGIIIVKLRRGQELALRAIARKGIGKDHAKWSP 766
            K+LYSSD TV PVDFSD S  ++  ++RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSP
Sbjct: 124  KDLYSSDPTVSPVDFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 183

Query: 765  AATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTYDD 589
            AATVTFMYEP+I+IN           K+++V+SSPT+VF+I+P + QV V DAEAYTYDD
Sbjct: 184  AATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDD 243

Query: 588  EVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSADT 409
            EV+KKAEAMGKPGLVEI A++DSFIFTVE+TG VKASQL LNAIEILKQKLDAVRLS DT
Sbjct: 244  EVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT 303

Query: 408  VEADEQFGELGAHMRGG 358
            VEAD+QFGELGAHMRGG
Sbjct: 304  VEADDQFGELGAHMRGG 320


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi|297329735|gb|EFH60154.1|
            RBP36A [Arabidopsis lyrata subsp. lyrata]
          Length = 319

 Score =  495 bits (1274), Expect = e-137
 Identities = 252/319 (78%), Positives = 281/319 (88%), Gaps = 3/319 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            M+GATYQRFPKI IRE+KDDY +FELRETDVS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1    MDGATYQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEF L  KC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFS--DASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKW 772
            TS++LYS+D TV PVDF+   ++ D+++ +GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSRDLYSADPTVTPVDFTIDSSASDSSEQKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 771  SPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTY 595
            SPAATVTFMYEPDI IN           K D +ESSPTKVF I+P + QV V D EAYTY
Sbjct: 181  SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGIDPVTRQVVVVDPEAYTY 240

Query: 594  DDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSA 415
            D+EVIKKAEAMGKPGL+EIH K+DSFIFTVE+TG VKASQL LNAI+ILKQKLDAVRLS 
Sbjct: 241  DEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVRLSD 300

Query: 414  DTVEADEQFGELGAHMRGG 358
            DTVEAD+QFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Cucumis sativus]
          Length = 320

 Score =  494 bits (1273), Expect = e-137
 Identities = 253/320 (79%), Positives = 284/320 (88%), Gaps = 4/320 (1%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            MEG++YQRFPK+KIRE++DDY +FELR+TD S+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1    MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC +DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFSD---ASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAK 775
            TSK+LYSSDHTVVPVDFSD   A+ +  D++GIIIVKLRRGQEL LRAIARKGIGKDHAK
Sbjct: 121  TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 774  WSPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYT 598
            WSPAATVTFMYEP I+IN           K+ +VES PT+VF+++  + QV V D EAYT
Sbjct: 181  WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 597  YDDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLS 418
            YDDEVIKKAEAMGK GLV+I A+EDSFIFTVE+TG +KASQL LNAI+ILKQKLDAVRLS
Sbjct: 241  YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 417  ADTVEADEQFGELGAHMRGG 358
             DTVEAD+QFGELGAHMRGG
Sbjct: 301  DDTVEADDQFGELGAHMRGG 320


>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
            gi|482566867|gb|EOA31056.1| hypothetical protein
            CARUB_v10014208mg [Capsella rubella]
          Length = 319

 Score =  492 bits (1266), Expect = e-136
 Identities = 250/319 (78%), Positives = 280/319 (87%), Gaps = 3/319 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            M+GATYQRFPK+KIRE+KDDY +FELRETDVS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1    MDGATYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEF L  KC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFS--DASLDNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKW 772
            TS++LYS+D TV PVDF+   ++ D+++ +GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSRDLYSADPTVTPVDFTIDSSASDSSEHKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 771  SPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTY 595
            SPAATVTFMYEPDI IN           K D +ES PTKVF I+P + QV V D EAYTY
Sbjct: 181  SPAATVTFMYEPDIIINEDMMDTLTEDEKIDLIESCPTKVFGIDPVTRQVVVVDPEAYTY 240

Query: 594  DDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSA 415
            D+EVIKKAEAMGKPGL+EIH K+DSFIFTVE+TG VKASQL LNAI+ILKQKLDAVRLS 
Sbjct: 241  DEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVRLSD 300

Query: 414  DTVEADEQFGELGAHMRGG 358
            DTVEAD+QFGELGAHM GG
Sbjct: 301  DTVEADDQFGELGAHMHGG 319


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis thaliana]
            gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
            Full=DNA-directed RNA polymerases II, IV and V subunit 3;
            AltName: Full=DNA-directed RNA polymerase II 36 kDa
            polypeptide A; AltName: Full=DNA-directed RNA polymerase
            II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
            Short=RNA polymerase II subunit B3-A
            gi|514318|gb|AAB03741.1| RNA polymerase II third largest
            subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
            DNA-directed RNA polymerase II, third largest subunit
            [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
            putative DNA-directed RNA polymerase II third largest
            subunit [Arabidopsis thaliana] gi|20465883|gb|AAM20046.1|
            putative DNA-directed RNA polymerase II [Arabidopsis
            thaliana] gi|330251306|gb|AEC06400.1| DNA-directed RNA
            polymerase II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score =  491 bits (1264), Expect = e-136
 Identities = 252/319 (78%), Positives = 283/319 (88%), Gaps = 3/319 (0%)
 Frame = -1

Query: 1305 MEGATYQRFPKIKIREVKDDYMRFELRETDVSIANALRRVMIAEVPTIAIDLVEIEVNSS 1126
            M+GATYQRFPKIKIRE+KDDY +FELRETDVS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1    MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 1125 VLNDEFIAHRLGLVPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCINDQTLDV 946
            VLNDEFIAHRLGL+PLTSERAM+MRFSRDCDACDGDGQCE+CSVEF L  KC+ DQTLDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 945  TSKELYSSDHTVVPVDFS-DASL-DNTDSRGIIIVKLRRGQELALRAIARKGIGKDHAKW 772
            TS++LYS+D TV PVDF+ D+S+ D+++ +GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121  TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 771  SPAATVTFMYEPDIYINXXXXXXXXXXXKQDFVESSPTKVFDINP-SGQVYVHDAEAYTY 595
            SPAATVTFMYEPDI IN           K D +ESSPTKVF ++P + QV V D EAYTY
Sbjct: 181  SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240

Query: 594  DDEVIKKAEAMGKPGLVEIHAKEDSFIFTVETTGGVKASQLFLNAIEILKQKLDAVRLSA 415
            D+EVIKKAEAMGKPGL+EI  K+DSFIFTVE+TG VKASQL LNAI++LKQKLDAVRLS 
Sbjct: 241  DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300

Query: 414  DTVEADEQFGELGAHMRGG 358
            DTVEAD+QFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319