BLASTX nr result
ID: Mentha27_contig00013810
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha27_contig00013810
(860 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CDJ82925.1| RNA-dependent RNA polymerase domain containing p... 108 3e-21
gb|EMR61648.1| putative replicase readthrough protein [Eutypa la... 108 3e-21
gb|AAA61798.1| RNA-dependent RNA polymerase [Lettuce infectious ... 102 2e-19
ref|NP_619692.2| polyprotein [Lettuce infectious yellows virus] ... 102 2e-19
ref|NP_733943.1| replicase [Lettuce infectious yellows virus] 102 2e-19
ref|YP_233102.2| 2a protein [Cassia yellow blotch virus] gi|5131... 100 5e-19
ref|YP_762617.1| putative replicase [Streptocarpus flower break ... 100 7e-19
gb|ADR82074.1| 2a protein [Tomato aspermy virus] 99 2e-18
ref|YP_008802584.1| 183k replicase [Yellow tailflower mild mottl... 99 3e-18
ref|YP_950422.1| 55 kDa replicase [Maracuja mosaic virus] gi|905... 99 3e-18
gb|AEI29173.1| putative RNA replicase, partial [Passion fruit mo... 98 4e-18
sp|P89202.2|RDRP_SHMV RecName: Full=Replicase large subunit; Alt... 98 5e-18
ref|NP_620841.1| 180K protein [Obuda pepper virus] gi|12643500|s... 98 5e-18
sp|P89659.2|RDRP_ORSVC RecName: Full=Replicase large subunit; Al... 97 6e-18
gb|AAB49498.2| 183 kDa protein, partial [Odontoglossum ringspot ... 97 6e-18
ref|NP_671718.1| 183kDa protein [Paprika mild mottle virus] gi|2... 97 8e-18
ref|YP_004956727.1| unnamed protein product [Clitoria yellow mot... 97 8e-18
ref|YP_004465358.1| unnamed protein product [Passion fruit mosai... 97 8e-18
gb|AGI44298.1| RNA dependent RNA polymerase [Blueberry necrotic ... 97 1e-17
ref|YP_004901701.1| polymerase [Blueberry necrotic ring blotch v... 97 1e-17
>emb|CDJ82925.1| RNA-dependent RNA polymerase domain containing protein [Haemonchus
contortus]
Length = 606
Score = 108 bits (269), Expect = 3e-21
Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
Frame = -2
Query: 763 ENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHVMYQR 584
E D+SK+DKSQ F E F +LGM L W GH + + G+ + YQR
Sbjct: 415 EIDFSKFDKSQLGLCFEFENYFFERLGMEKYLNSLWRLGHQKSNAIDFIAGVKALLFYQR 474
Query: 583 KSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQILAEVFN 404
KSGDA TAFGN ++++ S+ + I A ++GDDSL+ ++ + L+++FN
Sbjct: 475 KSGDAATAFGNTLISMASIARSTDIRGFICAYFVGDDSLIFYADKRGDKQLVKNLSDIFN 534
Query: 403 LGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQ-WDERFVS 233
L AKS YF S FII + + V +PDP+KRVER + D Q +RF+S
Sbjct: 535 LSAKSIQKEVGYFCSTFII--ETADGYVPIPDPLKRVERLGRDLCGVDKQGLKDRFIS 590
>gb|EMR61648.1| putative replicase readthrough protein [Eutypa lata UCREL1]
Length = 2449
Score = 108 bits (269), Expect = 3e-21
Identities = 79/279 (28%), Positives = 138/279 (49%), Gaps = 8/279 (2%)
Frame = -2
Query: 859 PNYHENLLKDGKDIAAFLQSVHPFGVKGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGM 680
P N K+ +I AFL + L +END+S +D+SQ R L+ + S LGM
Sbjct: 2175 PEVLYNKGKNMDEIEAFLNRYYQASFGALA-IENDFSDFDRSQERVATALDLALLSMLGM 2233
Query: 679 NLGLLEHWLGGHVECSLRSVALGLSLHVMYQRKSGDATTAFGNVVLNIVSVTYAYA--GT 506
+ L+ W GH + S S +LGL +++ +QRKSGD TT+F N VLN+ ++ +
Sbjct: 2234 HPEDLDEWARGHYKHSNISFSLGLVVYLRWQRKSGDVTTSFCNTVLNMTAMAWCLGLKHE 2293
Query: 505 RVIWAVYMGDDSLV----CARQVGQVEEAPQILAEVFNLGAKSYMTNSPYFASNFIIVDD 338
V+ +++GDDS + +V++ + + +FN AK+ ++ YF +I+
Sbjct: 2294 EVLVGMFLGDDSFLQLIPSPGLKERVKQCSEKIGTLFNGTAKTSYFDTGYFCGLYIL--Q 2351
Query: 337 NNERVVLVPDPVKRVERWSMMVSAEDPQWDERFVSAKDSMRAYKNCLNVVGLESRIAER- 161
+ + L DP +R + + E ++S +DS+R Y++ L + ER
Sbjct: 2352 VGDEIKLAADPYRRAVKLGRWDMKDHDMVKENWISFQDSVRNYEDRRVQEALVGAVHERH 2411
Query: 160 -YAVSPRDVAGASGAIATVISDFKKFRGMWEEEAELSVY 47
+A P +V ++ T+ FK+FR W+ ++ Y
Sbjct: 2412 PWAHGP-NVDALVCSLYTLKKSFKEFRNFWDRNVSVTFY 2449
>gb|AAA61798.1| RNA-dependent RNA polymerase [Lettuce infectious yellows virus]
gi|1097409|prf||2113433B RNA-dependent RNA polymerase
Length = 476
Score = 102 bits (254), Expect = 2e-19
Identities = 72/255 (28%), Positives = 130/255 (50%), Gaps = 5/255 (1%)
Frame = -2
Query: 820 IAAFLQSVHPFGVKGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHV 641
+A ++S P G+ LE D+SK+DKSQG + EE+++ G + L + +
Sbjct: 220 LAELIESKLPLGLNAYHTLEIDFSKFDKSQGTCFKLYEEMMYKMFGFSPELYDRDF-KYT 278
Query: 640 ECSLRSVA-LGLSLHVMYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLV 464
E R+ A G+ L + QR++G T N ++ + + +Y + + GDDSL+
Sbjct: 279 EYFCRAKATCGVDLELGTQRRTGSPNTWLSNTLVTLGMMLSSYDIDDIDLLLVSGDDSLI 338
Query: 463 CARQVGQVEEAPQILAEVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERW 284
+R+ + Q + + F + AK +SPYF S FI+ + N ++ ++PDP++ E+
Sbjct: 339 FSRK--HLPNKTQEINKNFGMEAKYIEKSSPYFCSKFIV--ELNGKLKVIPDPIRFFEKL 394
Query: 283 SMMVSAED----PQWDERFVSAKDSMRAYKNCLNVVGLESRIAERYAVSPRDVAGASGAI 116
S+ + ED ERF+S KD M+ Y N + V+ ++ + RY++ A I
Sbjct: 395 SIPIRQEDFVNGSVVKERFISFKDLMKEYDNDVAVIRIDEAVCYRYSIPVGCSYAALCYI 454
Query: 115 ATVISDFKKFRGMWE 71
+S+F FR +++
Sbjct: 455 HCCMSNFVSFRRIYD 469
>ref|NP_619692.2| polyprotein [Lettuce infectious yellows virus]
gi|313471412|sp|Q83045.2|R1AB_LIYV9 RecName:
Full=Replicase polyprotein 1ab; Contains: RecName:
Full=Leader protease; Short=L-PRO; Contains: RecName:
Full=Methyltransferase/helicase/RNA-directed RNA
polymerase
Length = 2379
Score = 102 bits (254), Expect = 2e-19
Identities = 72/255 (28%), Positives = 130/255 (50%), Gaps = 5/255 (1%)
Frame = -2
Query: 820 IAAFLQSVHPFGVKGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHV 641
+A ++S P G+ LE D+SK+DKSQG + EE+++ G + L + +
Sbjct: 2123 LAELIESKLPLGLNAYHTLEIDFSKFDKSQGTCFKLYEEMMYKMFGFSPELYDRDF-KYT 2181
Query: 640 ECSLRSVA-LGLSLHVMYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLV 464
E R+ A G+ L + QR++G T N ++ + + +Y + + GDDSL+
Sbjct: 2182 EYFCRAKATCGVDLELGTQRRTGSPNTWLSNTLVTLGMMLSSYDIDDIDLLLVSGDDSLI 2241
Query: 463 CARQVGQVEEAPQILAEVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERW 284
+R+ + Q + + F + AK +SPYF S FI+ + N ++ ++PDP++ E+
Sbjct: 2242 FSRK--HLPNKTQEINKNFGMEAKYIEKSSPYFCSKFIV--ELNGKLKVIPDPIRFFEKL 2297
Query: 283 SMMVSAED----PQWDERFVSAKDSMRAYKNCLNVVGLESRIAERYAVSPRDVAGASGAI 116
S+ + ED ERF+S KD M+ Y N + V+ ++ + RY++ A I
Sbjct: 2298 SIPIRQEDFVNGSVVKERFISFKDLMKEYDNDVAVIRIDEAVCYRYSIPVGCSYAALCYI 2357
Query: 115 ATVISDFKKFRGMWE 71
+S+F FR +++
Sbjct: 2358 HCCMSNFVSFRRIYD 2372
>ref|NP_733943.1| replicase [Lettuce infectious yellows virus]
Length = 1967
Score = 102 bits (254), Expect = 2e-19
Identities = 72/255 (28%), Positives = 130/255 (50%), Gaps = 5/255 (1%)
Frame = -2
Query: 820 IAAFLQSVHPFGVKGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHV 641
+A ++S P G+ LE D+SK+DKSQG + EE+++ G + L + +
Sbjct: 1711 LAELIESKLPLGLNAYHTLEIDFSKFDKSQGTCFKLYEEMMYKMFGFSPELYDRDF-KYT 1769
Query: 640 ECSLRSVA-LGLSLHVMYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLV 464
E R+ A G+ L + QR++G T N ++ + + +Y + + GDDSL+
Sbjct: 1770 EYFCRAKATCGVDLELGTQRRTGSPNTWLSNTLVTLGMMLSSYDIDDIDLLLVSGDDSLI 1829
Query: 463 CARQVGQVEEAPQILAEVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERW 284
+R+ + Q + + F + AK +SPYF S FI+ + N ++ ++PDP++ E+
Sbjct: 1830 FSRK--HLPNKTQEINKNFGMEAKYIEKSSPYFCSKFIV--ELNGKLKVIPDPIRFFEKL 1885
Query: 283 SMMVSAED----PQWDERFVSAKDSMRAYKNCLNVVGLESRIAERYAVSPRDVAGASGAI 116
S+ + ED ERF+S KD M+ Y N + V+ ++ + RY++ A I
Sbjct: 1886 SIPIRQEDFVNGSVVKERFISFKDLMKEYDNDVAVIRIDEAVCYRYSIPVGCSYAALCYI 1945
Query: 115 ATVISDFKKFRGMWE 71
+S+F FR +++
Sbjct: 1946 HCCMSNFVSFRRIYD 1960
>ref|YP_233102.2| 2a protein [Cassia yellow blotch virus] gi|513125397|dbj|BAD98317.2|
2a protein [Cassia yellow blotch virus]
Length = 799
Score = 100 bits (250), Expect = 5e-19
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 1/189 (0%)
Frame = -2
Query: 769 YLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHVMY 590
+LE D SK+DKSQG + + +LG L W H + L G+ + V +
Sbjct: 466 FLEADLSKFDKSQGELHLEFQREILLKLGFPAPLANWWSDFHRQSYLSDKNAGVGIPVSF 525
Query: 589 QRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQILAEV 410
QR++GDA T FGN ++ + + Y Y +++ + + GDDSL+ +R+ E P + +
Sbjct: 526 QRRTGDAFTYFGNTLVTMSMMAYCYDLSKMEYCFFSGDDSLLISREKHSFE--PLLFQSL 583
Query: 409 FNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQ-WDERFVS 233
FN+ K + PY S +++ + RVV VPDPV+ ++R S +DP +VS
Sbjct: 584 FNMEIKVMEPSLPYICSKYLL-ETTGGRVVSVPDPVREIQRMSKRKIVKDPSVLRAHYVS 642
Query: 232 AKDSMRAYK 206
D M+ K
Sbjct: 643 FCDRMKFLK 651
>ref|YP_762617.1| putative replicase [Streptocarpus flower break virus]
gi|90855256|emb|CAJ13997.1| putative replicase
[Streptocarpus flower break virus]
Length = 1606
Score = 100 bits (249), Expect = 7e-19
Identities = 73/238 (30%), Positives = 110/238 (46%), Gaps = 2/238 (0%)
Frame = -2
Query: 781 KGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSL 602
+ + LE D SKYDKSQG F +E ++ LG++ L E W GH+ SL+ G+
Sbjct: 1367 EAMDILELDISKYDKSQGEFHCAVEYKIWELLGIDAYLEEVWKRGHMRTSLKDYTAGIKT 1426
Query: 601 HVMYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQI 422
+ YQRKSGD TT GN ++ + RVI A + GDDS++ + + +
Sbjct: 1427 VLWYQRKSGDVTTFIGNTIIIAACLATLVPMDRVIKAAFCGDDSIIYLPKGLDLPDIQIG 1486
Query: 421 LAEVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDER 242
++N AK + N YF +II D ++ DP+K + + + +E
Sbjct: 1487 ANLMWNFEAKLFRKNYGYFCGRYIIHHDRG--AIVYYDPLKLISKLGCKHIKDFEHLEEF 1544
Query: 241 FVSAKDSMRAYKNCLNVVGLESRIAERYAVSPRDVAG--ASGAIATVISDFKKFRGMW 74
+S D + NC L IAE Y P V G A I+ +SD FR ++
Sbjct: 1545 RISLSDVCSSLSNCAYFGQLNDAIAEVY---PTAVNGSFAFCCISKFLSDKTLFRRLF 1599
>gb|ADR82074.1| 2a protein [Tomato aspermy virus]
Length = 828
Score = 99.4 bits (246), Expect = 2e-18
Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 5/252 (1%)
Frame = -2
Query: 799 VHPFGVKGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSV 620
+ F V LE D SK+DKSQG +++E + ++LG + + + W H ++
Sbjct: 507 IKDFSVLNKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDK 566
Query: 619 ALGLSLHVMYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQV 440
G+S+ + +QR++GDA T FGN ++ + + Y ++ ++ GDDSL +
Sbjct: 567 RAGVSMPISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSL--GFSIKAP 624
Query: 439 EEAPQILAEVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERW---SMMVS 269
P + +FN+ AK + PY S F++ DD VPDP++ ++R + +
Sbjct: 625 VGDPSLFTSLFNMEAKVMEPSVPYICSKFLLTDDFG-NTFSVPDPLREIQRLGSKKIPLD 683
Query: 268 AEDPQWDERFVSAKDSMR--AYKNCLNVVGLESRIAERYAVSPRDVAGASGAIATVISDF 95
+D F+S D ++ + N ++ L +Y S D+ GA ++F
Sbjct: 684 EDDRSLHAHFMSFVDRLKFLNHMNQTSMTQLSLFYETKYRKSGDDILLVLGAFNKYTANF 743
Query: 94 KKFRGMWEEEAE 59
++G++ E +
Sbjct: 744 NAYKGLYYSEKQ 755
>ref|YP_008802584.1| 183k replicase [Yellow tailflower mild mottle virus]
gi|556571614|gb|AGZ63345.1| 183k replicase [Yellow
tailflower mild mottle virus] gi|556571619|gb|AGZ63349.1|
183k replicase [Yellow tailflower mild mottle virus]
Length = 1614
Score = 98.6 bits (244), Expect = 3e-18
Identities = 62/207 (29%), Positives = 100/207 (48%)
Frame = -2
Query: 766 LENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHVMYQ 587
LE D SKYDKSQ F +E ++ +LG++ L E W GH + +L+ G+ + YQ
Sbjct: 1385 LELDVSKYDKSQNEFHCAVEYEIWRRLGIDEFLAEVWKQGHRKTTLKDYVAGIRTCLWYQ 1444
Query: 586 RKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQILAEVF 407
RKSGD TT GN V+ ++ +VI A + GDDSL+ + Q+ + ++
Sbjct: 1445 RKSGDVTTFIGNTVIIAACISSMVPMDKVIKAAFCGDDSLIYIPKGTQMPDIQAGANLMW 1504
Query: 406 NLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDERFVSAK 227
N AK + YF ++I D ++ DP+K + + + +E VS
Sbjct: 1505 NFEAKLFKKRYGYFCGRYVIHHDRG--AIVYVDPLKIISKLGAKHIKDKEHLEEFRVSLM 1562
Query: 226 DSMRAYKNCLNVVGLESRIAERYAVSP 146
D ++ NC + L+ I E + +P
Sbjct: 1563 DVCKSLNNCSYYLQLDEAIGEVHKTAP 1589
>ref|YP_950422.1| 55 kDa replicase [Maracuja mosaic virus] gi|90568377|gb|ABD94119.1|
55 kDa replicase [Maracuja mosaic virus]
Length = 480
Score = 98.6 bits (244), Expect = 3e-18
Identities = 76/226 (33%), Positives = 101/226 (44%), Gaps = 4/226 (1%)
Frame = -2
Query: 823 DIAAFLQSVHPFGVKGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGH 644
DI F SV G + LE D SKYDKSQ F F LE ++ +LG++ + W GH
Sbjct: 233 DIEEFFNSVT--GKNDMDILELDVSKYDKSQDDFHFALEMKIWERLGLDNFIKTLWSNGH 290
Query: 643 VECSLRSVALGLSLHVMYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLV 464
L+ G+ + YQRKSGD TT GN V+ V+ R I A + GDDSLV
Sbjct: 291 KRTILKDYTAGIKTVLYYQRKSGDVTTFIGNTVIIAACVSNILPIERCIKASFCGDDSLV 350
Query: 463 C---ARQVGQVEEAPQILAEVFNLGAKSYM-TNSPYFASNFIIVDDNNERVVLVPDPVKR 296
G V+ + V+N AK +M YF +I+ DN V+ PDP+K
Sbjct: 351 LMPKGLNYGDVQSKANL---VWNFEAKLFMKQRHAYFCGKYIVFHDNG--AVVFPDPLKL 405
Query: 295 VERWSMMVSAEDPQWDERFVSAKDSMRAYKNCLNVVGLESRIAERY 158
V + +E S D + NC L+ I E Y
Sbjct: 406 VGKLGCKNLQSREHCEELRRSLCDVAGNFGNCAYFSLLDEAIQETY 451
>gb|AEI29173.1| putative RNA replicase, partial [Passion fruit mosaic virus-TGP]
Length = 1600
Score = 98.2 bits (243), Expect = 4e-18
Identities = 77/230 (33%), Positives = 104/230 (45%), Gaps = 4/230 (1%)
Frame = -2
Query: 835 KDGKDIAAFLQSVHPFGVKGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHW 656
K DI F SV+ G + LE D SKYDKSQ F F LE ++ +LG++ + W
Sbjct: 1349 KTPADIEEFFSSVN--GKNEMDILELDVSKYDKSQDDFHFTLEMKIWERLGLDDYIKVLW 1406
Query: 655 LGGHVECSLRSVALGLSLHVMYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGD 476
GH L G+ + YQRKSGD TT GN V+ V + I A + GD
Sbjct: 1407 QNGHKRTILSDYTAGIKTVLYYQRKSGDVTTFIGNTVIIAACVCNILPIEKCIKASFCGD 1466
Query: 475 DSLVCARQVGQVEEAPQILAEVFNLGAKSYM-TNSPYFASNFIIVDDNNERVVLVPDPVK 299
DSLV + E Q V+N AK +M YF +++ DN V+ PDP+K
Sbjct: 1467 DSLVLMPKGLDYSEVQQKANLVWNFEAKLFMKKRHAYFCGKYVVFHDNG--AVVFPDPLK 1524
Query: 298 RVERWSMMVSAEDPQWD--ERF-VSAKDSMRAYKNCLNVVGLESRIAERY 158
+ + + S WD E F S D + NC L+ + E Y
Sbjct: 1525 LIGK---LGSKNIQSWDHCEDFRRSLCDVATNFGNCAYFSLLDEAVQENY 1571
>sp|P89202.2|RDRP_SHMV RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein;
AltName: Full=RNA-directed RNA polymerase; Contains:
RecName: Full=Replicase small subunit; AltName: Full=126
kDa protein; AltName: Full=Methyltransferase/RNA
helicase; Short=MT/HEL
Length = 1629
Score = 97.8 bits (242), Expect = 5e-18
Identities = 61/209 (29%), Positives = 99/209 (47%)
Frame = -2
Query: 784 VKGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLS 605
V ++ LE D SKYDKSQ +F F +E ++ LG++ + + W GH + LR G+
Sbjct: 1393 VGDMEILELDISKYDKSQNKFHFEVEMRIWEMLGIDKYIEKVWENGHRKTHLRDYTAGIK 1452
Query: 604 LHVMYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQ 425
+ YQRKSGD TT GN ++ + +V A + GDDS++ + +
Sbjct: 1453 TVIEYQRKSGDVTTFIGNTIIIAACLCSILPMEKVFKAGFCGDDSIIYLPRNLLYPDIQS 1512
Query: 424 ILAEVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDE 245
+ ++N AK + YF + + N + L+PDP+K + + + +E
Sbjct: 1513 VSNNMWNFEAKLFKKLHGYFCGRYXL--RNGRYLRLLPDPLKIITKLGCKAIKDWDHLEE 1570
Query: 244 RFVSAKDSMRAYKNCLNVVGLESRIAERY 158
+S D YKNC LES + E +
Sbjct: 1571 FRISMFDMACEYKNCFGFDVLESAVKESF 1599
>ref|NP_620841.1| 180K protein [Obuda pepper virus] gi|12643500|sp|P90211.1|RDRP_TMOB
RecName: Full=Replicase large subunit; AltName: Full=183
kDa protein; AltName: Full=RNA-directed RNA polymerase;
Contains: RecName: Full=Replicase small subunit; AltName:
Full=126 kDa protein; AltName: Full=Methyltransferase/RNA
helicase; Short=MT/HEL gi|436231|dbj|BAA02700.1| 180K
protein [Obuda pepper virus]
Length = 1616
Score = 97.8 bits (242), Expect = 5e-18
Identities = 60/210 (28%), Positives = 99/210 (47%)
Frame = -2
Query: 775 LKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHV 596
++ LE D SKYDKSQ F +E ++ +LG++ L E W GH + +L+ G+ +
Sbjct: 1385 MEVLELDVSKYDKSQNEFHCAVEYEIWKRLGIDEFLAEVWKQGHRKTTLKDYTAGIKTCL 1444
Query: 595 MYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQILA 416
YQRKSGD TT GN V+ + +VI A + GDDSLV + ++
Sbjct: 1445 WYQRKSGDVTTFIGNTVIIAACMASMLPMEKVIKAAFCGDDSLVYLPKGCELPNIQSCAN 1504
Query: 415 EVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDERFV 236
++N AK + YF ++I D ++ DP+K + + + +E +
Sbjct: 1505 LMWNFEAKLFKKTYGYFCGRYVIHHDRG--AIVYVDPLKIISKLGAKHITDKEHLEEFRI 1562
Query: 235 SAKDSMRAYKNCLNVVGLESRIAERYAVSP 146
S D ++ NC L+ + E + +P
Sbjct: 1563 SLADVSKSLNNCAYYAQLDEAVREVHKTAP 1592
>sp|P89659.2|RDRP_ORSVC RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein;
AltName: Full=RNA-directed RNA polymerase; Contains:
RecName: Full=Replicase small subunit; AltName: Full=126
kDa protein; AltName: Full=Methyltransferase/RNA
helicase; Short=MT/HEL gi|2339961|dbj|BAA21828.1| 180k
protein [Odontoglossum ringspot virus]
Length = 1612
Score = 97.4 bits (241), Expect = 6e-18
Identities = 71/234 (30%), Positives = 108/234 (46%)
Frame = -2
Query: 775 LKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHV 596
++ LE D SKYDKSQ F +E L++ +LG+N L E W GH + SL+ G+ +
Sbjct: 1374 MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLNGFLEEVWKQGHRKTSLKDYTAGIKTCL 1433
Query: 595 MYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQILA 416
YQRKSGD TT GN V+ + +VI A + GDDS++ + + +
Sbjct: 1434 WYQRKSGDVTTFIGNTVIIAACLASMIPMDKVIKAAFCGDDSMLYIPKGLDLPDIQSGAN 1493
Query: 415 EVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDERFV 236
++N AK Y YF +II D ++ DPVK + + +E +
Sbjct: 1494 LMWNFEAKLYRKRYGYFCGRYIIHHDRG--AIVYYDPVKLISKLGCKHIKSLDHLEEFRI 1551
Query: 235 SAKDSMRAYKNCLNVVGLESRIAERYAVSPRDVAGASGAIATVISDFKKFRGMW 74
S D + NC L IAE + + + A +I +SD FR ++
Sbjct: 1552 SLCDVSASLNNCAYYGQLNDAIAEVHKTAVNG-SFAFCSIVKYLSDKNLFRTLF 1604
>gb|AAB49498.2| 183 kDa protein, partial [Odontoglossum ringspot virus]
Length = 1611
Score = 97.4 bits (241), Expect = 6e-18
Identities = 71/234 (30%), Positives = 108/234 (46%)
Frame = -2
Query: 775 LKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHV 596
++ LE D SKYDKSQ F +E L++ +LG+N L E W GH + SL+ G+ +
Sbjct: 1373 MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLNGFLEEVWKQGHRKTSLKDYTAGIKTCL 1432
Query: 595 MYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQILA 416
YQRKSGD TT GN V+ + +VI A + GDDS++ + + +
Sbjct: 1433 WYQRKSGDVTTFIGNTVIIAACLASMIPMDKVIKAAFCGDDSMLYIPKGLDLPDIQSGAN 1492
Query: 415 EVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDERFV 236
++N AK Y YF +II D ++ DPVK + + +E +
Sbjct: 1493 LMWNFEAKLYRKRYGYFCGRYIIHHDRG--AIVYYDPVKLISKLGCKHIKSLDHLEEFRI 1550
Query: 235 SAKDSMRAYKNCLNVVGLESRIAERYAVSPRDVAGASGAIATVISDFKKFRGMW 74
S D + NC L IAE + + + A +I +SD FR ++
Sbjct: 1551 SLCDVSASLNNCAYYGQLNDAIAEVHKTAVNG-SFAFCSIVKYLSDKNLFRTLF 1603
>ref|NP_671718.1| 183kDa protein [Paprika mild mottle virus]
gi|22138834|dbj|BAC07266.1| 183kDa protein [Paprika mild
mottle virus]
Length = 1616
Score = 97.1 bits (240), Expect = 8e-18
Identities = 61/210 (29%), Positives = 99/210 (47%)
Frame = -2
Query: 775 LKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHV 596
++ LE D SKYDKSQ F +E ++ +LG++ L E W GH +L+ G+ +
Sbjct: 1385 MEVLELDISKYDKSQNEFHCAVEYEIWRRLGIDDFLAEVWKQGHRRTTLKDFTSGIKTCL 1444
Query: 595 MYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQILA 416
YQRKSGD TT GN V+ + +VI A + GDDSLV + ++ +
Sbjct: 1445 WYQRKSGDVTTFIGNTVIIAACLASMLPMEKVIKAAFCGDDSLVYLPKGCELPDIQSCAN 1504
Query: 415 EVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDERFV 236
++N AK + YF ++I D ++ DP+K + + + +E V
Sbjct: 1505 LMWNFEAKLFKKTYGYFCGRYVIHHDRG--AIVYVDPLKIISKLGAKHITDREHLEEFRV 1562
Query: 235 SAKDSMRAYKNCLNVVGLESRIAERYAVSP 146
S D ++ NC L+ + E + +P
Sbjct: 1563 SLADVSKSLNNCAYYTQLDEAVREVHRTAP 1592
>ref|YP_004956727.1| unnamed protein product [Clitoria yellow mottle virus]
gi|364506294|gb|AEW50165.1| replicase readthrough
component [Clitoria yellow mottle virus]
Length = 1633
Score = 97.1 bits (240), Expect = 8e-18
Identities = 60/206 (29%), Positives = 99/206 (48%)
Frame = -2
Query: 775 LKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHV 596
L+ LE D SKYDKSQ +F F +E ++ +LG++ + + W GH L+ G+ +
Sbjct: 1400 LEILELDISKYDKSQNQFHFEVEMRIWERLGIDCYIAKLWENGHRRTFLKDYTAGIKTVI 1459
Query: 595 MYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLVCARQVGQVEEAPQILA 416
YQ+KSGD TT GN ++ + + A + GDDS++ + + Q +
Sbjct: 1460 EYQKKSGDVTTFIGNTIVIAACLCSILPLEKCYKAAFCGDDSIIYLPRNILYPDIQQTAS 1519
Query: 415 EVFNLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDERFV 236
++N AK + YF FI+ +N + ++PDP+K V + + +E +
Sbjct: 1520 HLWNFEAKLFRKLHGYFCGRFIL--RSNGHIRMIPDPLKIVTKLGCKSIRDRAHLEEFRI 1577
Query: 235 SAKDSMRAYKNCLNVVGLESRIAERY 158
S D YKN LE+ + E Y
Sbjct: 1578 SLFDMASEYKNMFMFDLLEAAVKESY 1603
>ref|YP_004465358.1| unnamed protein product [Passion fruit mosaic virus]
gi|332980602|gb|AEF01559.1| 184 kDa protein [Passion
fruit mosaic virus]
Length = 1611
Score = 97.1 bits (240), Expect = 8e-18
Identities = 77/230 (33%), Positives = 103/230 (44%), Gaps = 4/230 (1%)
Frame = -2
Query: 835 KDGKDIAAFLQSVHPFGVKGLKYLENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHW 656
K DI F SV G + LE D SKYDKSQ F F LE ++ +LG++ + W
Sbjct: 1360 KTPADIEEFFNSVT--GKNEMDILELDVSKYDKSQDDFHFTLEMKIWERLGLDDYIKVLW 1417
Query: 655 LGGHVECSLRSVALGLSLHVMYQRKSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGD 476
GH L G+ + YQRKSGD TT GN V+ V + I A + GD
Sbjct: 1418 QNGHKRTILSDYTAGIKTVLYYQRKSGDVTTFIGNTVIIAACVCNILPIEKCIKASFCGD 1477
Query: 475 DSLVCARQVGQVEEAPQILAEVFNLGAKSYM-TNSPYFASNFIIVDDNNERVVLVPDPVK 299
DSLV + E Q V+N AK +M YF +++ DN V+ PDP+K
Sbjct: 1478 DSLVLMPKGLDYSEVQQKANLVWNFEAKLFMKKRHAYFCGKYVVFHDNG--AVVFPDPLK 1535
Query: 298 RVERWSMMVSAEDPQWD--ERF-VSAKDSMRAYKNCLNVVGLESRIAERY 158
+ + + S WD E F S D + NC L+ + E Y
Sbjct: 1536 LIGK---LGSKNIQSWDHCEDFRRSLCDVATNFGNCAYFSLLDEAVQENY 1582
>gb|AGI44298.1| RNA dependent RNA polymerase [Blueberry necrotic ring blotch virus]
Length = 1145
Score = 96.7 bits (239), Expect = 1e-17
Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 1/203 (0%)
Frame = -2
Query: 763 ENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHVMYQR 584
E D SKYDKSQG+ V E + +LG+ ++ W H R + +S ++QR
Sbjct: 903 EFDMSKYDKSQGQLVLDFECALMRRLGVPEYIVGCWRVAHTRTRARDLTNKISFETVFQR 962
Query: 583 KSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLV-CARQVGQVEEAPQILAEVF 407
KSGDA+T FGN V+ ++++ V++ + GDDSL+ R +++ +IL+ +
Sbjct: 963 KSGDASTYFGNTVILMIALLDVLPDEDVVFGAFSGDDSLIFSTRPPDKIDF--KILSTRY 1020
Query: 406 NLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDERFVSAK 227
N K + YF S F++ + N R V+ PDP+KR + +E VS
Sbjct: 1021 NFEVKLFDFQYHYFCSKFVL--NVNGRWVVTPDPLKRAVKLGRADLRNFEHVEEYRVSFI 1078
Query: 226 DSMRAYKNCLNVVGLESRIAERY 158
D+++ Y N V L + ERY
Sbjct: 1079 DNVKTYNNSAVVEKLSLAVMERY 1101
>ref|YP_004901701.1| polymerase [Blueberry necrotic ring blotch virus]
gi|351630291|gb|AEQ55300.1| polymerase [Blueberry
necrotic ring blotch virus]
Length = 1144
Score = 96.7 bits (239), Expect = 1e-17
Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 1/203 (0%)
Frame = -2
Query: 763 ENDYSKYDKSQGRFVFVLEELVFSQLGMNLGLLEHWLGGHVECSLRSVALGLSLHVMYQR 584
E D SKYDKSQG+ V E + +LG+ ++ W H R + +S ++QR
Sbjct: 902 EFDMSKYDKSQGQLVLDFECALMRRLGVPEYIVGCWRVAHTRTRARDLTNKISFETVFQR 961
Query: 583 KSGDATTAFGNVVLNIVSVTYAYAGTRVIWAVYMGDDSLV-CARQVGQVEEAPQILAEVF 407
KSGDA+T FGN V+ ++++ V++ + GDDSL+ R +++ +IL+ +
Sbjct: 962 KSGDASTYFGNTVILMIALLDVLPDEDVVFGAFSGDDSLIFSTRPPDKIDF--KILSTRY 1019
Query: 406 NLGAKSYMTNSPYFASNFIIVDDNNERVVLVPDPVKRVERWSMMVSAEDPQWDERFVSAK 227
N K + YF S F++ + N R V+ PDP+KR + +E VS
Sbjct: 1020 NFEVKLFDFQYHYFCSKFVL--NVNGRWVVTPDPLKRAVKLGRADLRNFDHVEEYRVSFI 1077
Query: 226 DSMRAYKNCLNVVGLESRIAERY 158
D+++ Y N V L + ERY
Sbjct: 1078 DNVKTYNNSAVVEKLSLAVMERY 1100