BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00012885
         (3536 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   298   e-159
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   277   e-145
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       261   e-136
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   255   e-132
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   263   e-130
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   245   e-127
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   246   e-126
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           246   e-126
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   244   e-122
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   259   e-119
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   251   e-118
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   251   e-118
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   249   e-115
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   256   e-115
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   236   e-113
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   246   e-108
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   259   e-105
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   227   e-103
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               239   e-102
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                240   e-102

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  298 bits (764), Expect(2) = e-159
 Identities = 185/559 (33%), Positives = 282/559 (50%), Gaps = 11/559 (1%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLWNPINXXXXXXXXXXXVIHAR---ITCRITNSSFHLSLC--Y 3371
            W + +N+      RI + W P             + H +   + C I + S  L +   Y
Sbjct: 55   WKWLNNYSHSARERIWIGWRPA-------WVNVTLTHTQEQLMVCDIQDQSHKLKMVAVY 107

Query: 3370 GFWDYVDRRPLWDSLILYTPLDFPAVVCGDFNCVLDPSERVGIRTPLEKEYKDFVDTAVY 3191
            G     DR+ LW  L+       P ++ GDFN V   ++R+      + E +DF    + 
Sbjct: 108  GLHTIADRKSLWSGLLQCVQQQDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQ 167

Query: 3190 LSLEDAPSMGCHFTWTNSN-----TYSKIDRFLINNSWQEARFACRANFLTRGTSSDHSA 3026
             +L ++ S   +++W+NS+       S+ID+  +N  W          +L  G S DHS 
Sbjct: 168  SNLIESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGIS-DHSP 226

Query: 3025 CIASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNPRAQGQYLLSSKLKTLHKAL 2846
             + +L    PQ  K FKF N   +   F E ++  W   N R + Q +  + LK + + L
Sbjct: 227  LLFNLMTGRPQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAIWLN-LKAVKREL 285

Query: 2845 WEMKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQFLDNAERSFF 2666
             +MK ++     EKV+  R  LQ +Q   D D  N  ++    SI    +   + E S  
Sbjct: 286  KQMKTQKIGLAHEKVKNLRHQLQDLQSQDDFDH-NDIMQTDAKSIMNDLRHWSHIEDSIL 344

Query: 2665 AQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDFTMFYNNL 2486
             Q+++   L   D NSK F++ V   +A N I  L  EDG +  D + + E+   FY  L
Sbjct: 345  QQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKL 404

Query: 2485 FGVSVPR-SPLDWNAARSGPMLNCTEQSALVVPVDAKEIKDALFSIGNDKAPGPDGYPAP 2309
             G        +D N  R G  L+   + +L+  V + EI +AL  IGNDKAPG DG+ A 
Sbjct: 405  LGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAY 464

Query: 2308 FFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFRPIACTNVVY 2129
            FFKK+W  +  ++   + EFF    + R +N   ++L+PK  H   V +FRPIAC  V+Y
Sbjct: 465  FFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIY 524

Query: 2128 KTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMVKI 1949
            K I+K+LTNRM  ++ +++N AQS FI GR I DN  LA ELIR Y +K +S PRC++K+
Sbjct: 525  KIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMS-PRCIMKV 583

Query: 1948 DLQKAYDSISWDFLRDVLF 1892
            D++KAYDS+ W FL  +L+
Sbjct: 584  DIRKAYDSVEWSFLETLLY 602



 Score =  293 bits (750), Expect(2) = e-159
 Identities = 161/435 (37%), Positives = 229/435 (52%), Gaps = 18/435 (4%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            F+ W+M CV++ ++S+ +NG      + R+GLRQGDPMSP LF LCMEYLSR       +
Sbjct: 610  FVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGS 669

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
            PDF FH KC+   ITHL FADDLLMF   + +SL  +     +F   SGLA +  KS I+
Sbjct: 670  PDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIY 729

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
            F GV      E+        G LP +YLG+PL +KKL      PL++ +T+    W    
Sbjct: 730  FCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKL 789

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR +L+KS+L  ++ +W    PL   +   +  + RKFLW      TK  P+AW  
Sbjct: 790  LSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWAT 849

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTLDPHPR 984
            +  PK  GG  + ++  WN+A   K+LW I  K D LW+RW+HS +IK +D  T++   +
Sbjct: 850  IQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQ 909

Query: 983  DSPLVKNILDIRDLIIS------KCADDINQSKQLLESWFKGNGTADVYHFLRNHGEKTL 822
             + +++ I+  RD + +       C  D    K+              Y  +  +GE+  
Sbjct: 910  TTWILRKIVKARDHLSNIGDWDEICIGDKFSMKK-------------AYKKISENGERVR 956

Query: 821  WCRVIWKGFIPPKFSITLWFALHGRLKTVDRLHFNPGSLWCVLCNLH-------NESHEH 663
            W R+I   +  PK    LW  LH RL TVDR+     S W V C+L+        E+ +H
Sbjct: 957  WRRLICNNYATPKSKFILWMMLHERLPTVDRI-----SRWGVQCDLNYRLCRNDGETIQH 1011

Query: 662  LFFKCPATAAVWGGI 618
            LFF C  +A VW  I
Sbjct: 1012 LFFSCSYSAGVWSKI 1026


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  277 bits (709), Expect(2) = e-145
 Identities = 156/433 (36%), Positives = 231/433 (53%), Gaps = 7/433 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            FI W+M CV + ++S+ +NG        ++GLRQGDP+SP LF L MEYLSR       +
Sbjct: 613  FIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKD 672

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
            P+F FH KC+  K+THL FADDLLMF   +++S+  +    + F   SGL  +  KS I+
Sbjct: 673  PEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIY 732

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
            FGGVC  E  ++        G+LP +YLG+PLA+KKL      PLID++T+    W    
Sbjct: 733  FGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHL 792

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-GT----KSCPIAWKK 1164
            LS AGR +LVK++L  ++ +W Q  PLP  +   + +  RKFLW GT       P+AW  
Sbjct: 793  LSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDF 852

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTLDPHPR 984
            +  PK  GGL + ++  WNKA   K+LW I  K D LW+RWV++ +IK ++   +     
Sbjct: 853  LQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSN 912

Query: 983  DSPLVKNILDIRDLIISKCADDINQSKQLLESWFKGNGTADVYHFLRNHGEKTLWCRVIW 804
             S +++ I + R+L+      +   +                Y  L+   E  +W R+I 
Sbjct: 913  TSWILRKIFESRELLTRTGGWEAVSNHM-------NFSIKKTYKLLQEDYENVVWKRLIC 965

Query: 803  KGFIPPKFSITLWFALHGRLKTVDRL-HFNPG-SLWCVLCNLHNESHEHLFFKCPATAAV 630
                 PK    LW A+  RL T +R+  +N   S  C +C    E+ +HLFF C  +  +
Sbjct: 966  NNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCKMCGNEIETIQHLFFNCIYSKEI 1025

Query: 629  WGGIKNWLKCKGQ 591
            WG +  +L  + Q
Sbjct: 1026 WGKVLLYLNLQPQ 1038



 Score =  269 bits (688), Expect(2) = e-145
 Identities = 171/563 (30%), Positives = 283/563 (50%), Gaps = 13/563 (2%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLW--NPINXXXXXXXXXXXVIHARITCRITNS----SFHLSLC 3374
            W + +N+     GRI + W  N +N                IT  + NS     F ++  
Sbjct: 55   WSWINNYACSPRGRIWVGWLNNDVNINVLSVTEQV------ITMEVKNSYGLNMFKMAAV 108

Query: 3373 YGFWDYVDRRPLWDSLILYTPLDF-PAVVCGDFNCVLDPSERVGIRTPLEKEYKDFVDTA 3197
            YG     DR+ LW+ L  +  +   P ++ GD+N V    +R+      E E  D     
Sbjct: 109  YGLHTIADRKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFV 168

Query: 3196 VYLSLEDAPSMGCHFTWTNSNT-----YSKIDRFLINNSWQEARFACRANFLTRGTSSDH 3032
            +   L +AP+ G  ++W N +       S+ID+  +N +W          +   G S DH
Sbjct: 169  LKAQLLEAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGIS-DH 227

Query: 3031 SACIASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNPRAQGQYLLSSKLKTLHK 2852
            S  I +L  Q  +  + FKF NF  D   F E++   W   N R + + +   +L+ + +
Sbjct: 228  SPLIFNLATQHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWV-RLQAVKR 286

Query: 2851 ALWEMKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQFLDNAERS 2672
            AL     K+++    +VE  R  L  +Q + ++  ++ EL+++E  +    +     + S
Sbjct: 287  ALKSFHSKKFSKAHCQVEELRRKLAAVQALPEVSQVS-ELQEEEKDLIAQLRKWSTIDES 345

Query: 2671 FFAQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDFTMFYN 2492
               Q+++ + L+L D NSKFF++ +    ARN I  L  + G   ++   I  +   FY 
Sbjct: 346  ILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYR 405

Query: 2491 NLFGVSVPR-SPLDWNAARSGPMLNCTEQSALVVPVDAKEIKDALFSIGNDKAPGPDGYP 2315
             L G S  +   +D +  R G  L+ T  + LV P+  +EI  AL  I + KAPG DG+ 
Sbjct: 406  RLLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFN 465

Query: 2314 APFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFRPIACTNV 2135
            + FFKK+W  +  ++   + +FF  G + + +N T+++LIPK        D+RPIAC + 
Sbjct: 466  SVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCST 525

Query: 2134 VYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMV 1955
            +YK I+KILT R+  ++ ++++ AQ+ FI  R I DN  LA ELIR Y ++ +S PRC++
Sbjct: 526  LYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVS-PRCVI 584

Query: 1954 KIDLQKAYDSISWDFLRDVLFSL 1886
            K+D++KAYDS+ W FL  +L  L
Sbjct: 585  KVDIRKAYDSVEWVFLESMLKEL 607


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  261 bits (667), Expect(2) = e-136
 Identities = 176/572 (30%), Positives = 281/572 (49%), Gaps = 21/572 (3%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLWNPINXXXXXXXXXXXVIHARITCRI----TNSSFHLSLCYG 3368
            W F  N+     G+I ++W+P                  ITC +    + S   +S+ Y 
Sbjct: 57   WSFVENYAFSDLGKIWVMWDPSVQVVVVAKSLQM-----ITCEVLLPGSPSWIIVSVVYA 111

Query: 3367 FWDYVDRRPLWDSLILYTPL----DFPAVVCGDFNCVLDPSERVG-IRTPLEKEYKDFVD 3203
              +   R+ LW  ++         D P +V GDFN VL+P E    +   ++   +DF D
Sbjct: 112  ANEVASRKELWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRD 171

Query: 3202 TAVYLSLEDAPSMGCHFTWTNSN----TYSKIDRFLINNSWQEARFACRANFLTRGTSSD 3035
              +   L D    G  FTW N +       KIDR L+N+SW  A F            SD
Sbjct: 172  CLLAAELSDLRYKGNTFTWWNKSHTTPVAKKIDRILVNDSWN-ALFPSSLGIFGSLDFSD 230

Query: 3034 HSACIASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNPRAQGQYLLSSKLKTLH 2855
            H +C   L E   + ++ FKF N+ + N  F  ++   W   N      + +S KLK L 
Sbjct: 231  HVSCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALK 290

Query: 2854 KALWEMKIKEYNNLSEKVEASRAALQHIQQ--MCDLDPLNRELRDQEISIRKHCQFLDNA 2681
            K + +     Y+ L ++ + +   L   Q   + D  P+N      E+   +    L  A
Sbjct: 291  KPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASF---ELEAERKWHILTAA 347

Query: 2680 ERSFFAQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDFTM 2501
            E SFF Q+++       D N+K+F+   +  N+ NSIS L   +G +      I++    
Sbjct: 348  EESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCAS 407

Query: 2500 FYNNLFGVSVPRSPLDWN------AARSGPMLNCTEQSALVVPVDAKEIKDALFSIGNDK 2339
            ++ +L G  V    ++ N      + R  P   C  +S        ++I+ ALFS+  +K
Sbjct: 408  YFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTF----SNEDIRAALFSLPRNK 463

Query: 2338 APGPDGYPAPFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADF 2159
            + GPDG+ A FF  +W+ VG +V +A+ EFF+ G +L++ N T+I LIPK  +    +DF
Sbjct: 464  SCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDF 523

Query: 2158 RPIACTNVVYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKV 1979
            RPI+C N +YK I ++LT+R+  LL  +I+ AQSAF+ GRS+ +N  LA +L+  Y    
Sbjct: 524  RPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSN 583

Query: 1978 LSPPRCMVKIDLQKAYDSISWDFLRDVLFSLS 1883
            +S PR M+K+DL+KA+DS+ W+F+   L +L+
Sbjct: 584  IS-PRGMLKVDLKKAFDSVRWEFVIAALRALA 614



 Score =  255 bits (651), Expect(2) = e-136
 Identities = 129/314 (41%), Positives = 180/314 (57%), Gaps = 5/314 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            FI+W+  C+++ TF++SINGG  GF K  +GLRQGDP+SP LF+L ME  S L   R  +
Sbjct: 619  FINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYES 678

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
                +H K     I+HL FADD+++F  G S SL  + + +D+F   SGL VN  KS ++
Sbjct: 679  GLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLY 738

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G+   E       +GF  GTLP++YLGLPL  +KL    + PL++++T+    W N C
Sbjct: 739  LAGLNQLESNANA-AYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKC 797

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLWG-----TKSCPIAWKK 1164
            LS AGR +L+ SV+ G   FW+ +  LP     RI SL  +FLW       K   ++W  
Sbjct: 798  LSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAA 857

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTLDPHPR 984
            +CLPK EGGLGLR L  WNK L  +++W +    DSLW  W H   +    FW ++    
Sbjct: 858  LCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQS 917

Query: 983  DSPLVKNILDIRDL 942
            DS   K +L +R L
Sbjct: 918  DSWTWKRLLSLRPL 931


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  255 bits (652), Expect(2) = e-132
 Identities = 127/336 (37%), Positives = 196/336 (58%), Gaps = 5/336 (1%)
 Frame = -1

Query: 1874 PCFIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRT 1695
            P F++W+  C+TS +FS++++G   G+ KG +GLRQGDP+SPSLF++ ME LSRL   + 
Sbjct: 616  PRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKF 675

Query: 1694 WNPDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQ 1515
             +    +H K    +I+ LAFADDL++F  G ++SL+ +  V++ FK  SGL +N  KS 
Sbjct: 676  SDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSA 735

Query: 1514 IFFGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNN 1335
            ++  G+   ++ + L  FGF  GT P +YLGLPL  +KL    ++ LID++ +  + W  
Sbjct: 736  VYTAGLEDTDKEDTL-AFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWAT 794

Query: 1334 SCLSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLWGTK-----SCPIAW 1170
              LS AGR +L+ SV+     FW+ S  LP      I  +  +FLWG          ++W
Sbjct: 795  KTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSW 854

Query: 1169 KKVCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTLDPH 990
            +  CLPK EGGLGLR+  TWNK L+ +++W +  + DSLW+ W H+  +++ +FW  +  
Sbjct: 855  QNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAA 914

Query: 989  PRDSPLVKNILDIRDLIISKCADDINQSKQLLESWF 882
               S + K IL +R L        +    QLL  W+
Sbjct: 915  SHHSWIWKAILGLRPLAKRFLRGAVGNG-QLLSYWY 949



 Score =  247 bits (630), Expect(2) = e-132
 Identities = 164/558 (29%), Positives = 268/558 (48%), Gaps = 11/558 (1%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLWNPINXXXXXXXXXXXVIHARITCRITNSSFHLSLCYGFWDY 3356
            W    N+E    GRI ++W+P              I   +     ++ F ++  Y     
Sbjct: 56   WKSVCNYEFAALGRIWVVWDPA-VEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCR 114

Query: 3355 VDRRPLWDSLILY----TPLDFPAVVCGDFNCVLDPSERVGIRTPLEKEYKDFVDTAVYL 3188
              RR LW  L L     T  D P ++ GDFN  LDP +     + + +  ++F +  +  
Sbjct: 115  YGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTS 174

Query: 3187 SLEDAPSMGCHFTWTNSNTYS----KIDRFLINNSWQEARFACRANFLTRGTSSDHSACI 3020
            ++ D P  G H+TW N+   +    KIDR L+N+SW  A      +F      SDH    
Sbjct: 175  NISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAM-EFSDHCPSC 233

Query: 3019 ASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNPRAQGQYLLSSKLKTLHKALWE 2840
             ++  Q     K FK  NF M +P F E +   W     +    + LS K K L   +  
Sbjct: 234  VNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRT 293

Query: 2839 MKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQFLDNAERSFFAQ 2660
               + Y+ L ++V  +   L+  Q      P +  L   E    +    L  AE  F  Q
Sbjct: 294  FNREHYSGLEKRVVQAAQNLKTCQNNLLAAP-SSYLAGLEKEAHRSWAELALAEERFLCQ 352

Query: 2659 RNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDFTMFYNNLFG 2480
            +++   L   D N+ FF+  +    A N I +L  + G    + + +      F+  LFG
Sbjct: 353  KSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFG 412

Query: 2479 VSVPRSPLDW-NAARSGPMLNCTEQSALVVPVDAKE--IKDALFSIGNDKAPGPDGYPAP 2309
             S      +  +   S     C E +  ++  +  E  IK   F++ ++K+PGPDGY + 
Sbjct: 413  SSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSE 472

Query: 2308 FFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFRPIACTNVVY 2129
            FFKK W+ VG  ++ AV EFF  G +L + N T+++++PKK +   + +FRPI+C N +Y
Sbjct: 473  FFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIY 532

Query: 2128 KTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMVKI 1949
            K I+K+L  R+ ++L   I+ +QSAF+KGR +T+N  LA EL++ + +  +S  R ++K+
Sbjct: 533  KVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANIS-SRGVLKV 591

Query: 1948 DLQKAYDSISWDFLRDVL 1895
            DL+KA+DS+ W F+ + L
Sbjct: 592  DLRKAFDSVGWGFIIETL 609


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  263 bits (672), Expect(2) = e-130
 Identities = 172/514 (33%), Positives = 266/514 (51%), Gaps = 13/514 (2%)
 Frame = -2

Query: 3385 LSLCYGFWDYVDRRPLWDSLILYTP----LDFPAVVCGDFNCVLDPSER-VGIRTPLEKE 3221
            LS  Y   D V R+ LW+ ++ ++     +D P  V GDFN +L PSE        +++ 
Sbjct: 3    LSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRP 62

Query: 3220 YKDFVDTAVYLSLEDAPSMGCHFTWTNSNTYS----KIDRFLINNSWQEARFACRANFLT 3053
             + F +T +  SL D    G  FTW N  + +    K+DR L+N+ W    F        
Sbjct: 63   TRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTT-FPSSLGLFG 121

Query: 3052 RGTSSDHSACIASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNPRAQGQYLLSS 2873
                SDHS+C  SL    P+ +K F+F NF + +  F  ++   W   +      Y +S 
Sbjct: 122  EPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSV 181

Query: 2872 KLKTLHKALWEMKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQF 2693
            KLK L K + +     Y+++ ++ + +  AL   Q +    P       +  + RK  + 
Sbjct: 182  KLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEAETQRKW-RI 240

Query: 2692 LDNAERSFFAQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGS-ITSDINIII 2516
            L  AE SFF QR++   L   D NS +F+   +   + N I FL    G  I    N+  
Sbjct: 241  LAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLEN 300

Query: 2515 EDFTMFYNNLFGVSVPRSPLDWNAARSGPM-LNCT--EQSALVVPVDAKEIKDALFSIGN 2345
                 F +NL   S    PL   A  S  +   C+  +Q +L  P  +++IK+A FS+  
Sbjct: 301  HCVEYFQSNLG--SEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPR 358

Query: 2344 DKAPGPDGYPAPFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVA 2165
            +KA GPDG+   FF   W  +G +V  A+ EFFT G +L++ N T++ LIPK ++  +++
Sbjct: 359  NKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMS 418

Query: 2164 DFRPIACTNVVYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEK 1985
            DFRPI+C N VYK I+K+LT+R+   L   I+H+QSAF+ GR   +N  LA EL+  Y K
Sbjct: 419  DFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNK 478

Query: 1984 KVLSPPRCMVKIDLQKAYDSISWDFLRDVLFSLS 1883
            K ++ P  M+K+DL+KA+DS+ WDF+   L +L+
Sbjct: 479  KNIA-PSSMLKVDLRKAFDSVRWDFIVSALRALN 511



 Score =  233 bits (595), Expect(2) = e-130
 Identities = 121/313 (38%), Positives = 188/313 (60%), Gaps = 6/313 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            F  W++ C+++A+FS+ +NG + G     +GLRQGDPMSP LF+L ME  S L   R  +
Sbjct: 516  FTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTS 575

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
                +H K    +I+HL FADD+++F  G S+SL  + + +++F G SGL +N +K+Q++
Sbjct: 576  GYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLY 635

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G+   E  + +  +GF  G+LPV+YLGLPL ++KL    + PLI+++T+  + W    
Sbjct: 636  HAGLSQSE-SDSMASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRL 694

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLWGTK-----SCPIAWKK 1164
            LS AGR +L+ SV+ G+  FWI S  LP     +I SL  +FLW ++        +AW +
Sbjct: 695  LSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQ 754

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFI-KNRDFWTLDPHP 987
            VCLPK EGG+GLR  A  N+ L+ +++W + + + SLW+ W     + K+  FW     P
Sbjct: 755  VCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKP 814

Query: 986  RDSPLVKNILDIR 948
             DS   K +L +R
Sbjct: 815  HDSWNWKCLLRLR 827


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  245 bits (625), Expect(2) = e-127
 Identities = 171/569 (30%), Positives = 270/569 (47%), Gaps = 23/569 (4%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLWNPINXXXXXXXXXXXVIHARITCRITNSSFHLSLCYGFWDY 3356
            W    N+E  + GRI +LW   N           ++   +        F  S  Y     
Sbjct: 55   WSILTNYEHNRRGRIWVLWRK-NVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYV 113

Query: 3355 VDRRPLWDSLILY--TPL--DFPAVVCGDFNCVLDPSERVG--IRTPLEKEYKDFVDTAV 3194
             +R+ LW  L  +  +P+    P  + GDFN  LD +E     +   +    +DF     
Sbjct: 114  EERKVLWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVIN 173

Query: 3193 YLSLEDAPSMGCHFTWTNSNTYS----KIDRFLINNSWQEARFACRANFLTRGTSSDHSA 3026
            Y SL D  + G  FTW N   +     K+DR LIN+ W +  F+   +    G  SDH  
Sbjct: 174  YCSLTDMAAQGPLFTWCNKREHGLIMKKLDRVLINDCWNQT-FSQSYSVFEAGGCSDHLR 232

Query: 3025 CIASLFEQVP---QFRKTFKFCNFWMDNPRFKEILDSVWRCNNP---RAQGQYLLSSKLK 2864
            C  SL  +     Q  K FKF N   D   FK ++ + W+   P        +  S  LK
Sbjct: 233  CRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLK 292

Query: 2863 TLHKALWEMKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQFLDN 2684
             L   +  M      NLS+K   +   L   Q +   +P +  + ++  +  +  + +  
Sbjct: 293  GLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAYSRWDR-VAI 351

Query: 2683 AERSFFAQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDFT 2504
             E  +  Q++K     + D+N+K F+       A N+I  +   DG + +  + I  +  
Sbjct: 352  LEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAE 411

Query: 2503 MFYNNLFGVSVPRSPLDWNAARSGPM-----LNCTE--QSALVVPVDAKEIKDALFSIGN 2345
             F+     +     P D+       +     + C++  Q +L+ PV A+EI+  LF + +
Sbjct: 412  RFFREFLQLI----PNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPS 467

Query: 2344 DKAPGPDGYPAPFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVA 2165
            DK+PGPDGY + FFK  W  +G++   AV  FFTKG + + +N T ++LIPKK+    + 
Sbjct: 468  DKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMK 527

Query: 2164 DFRPIACTNVVYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEK 1985
            D+RPI+C NV+YK I+KI+ NR+  +L K I   QSAF+K R + +N  LA EL+++Y K
Sbjct: 528  DYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHK 587

Query: 1984 KVLSPPRCMVKIDLQKAYDSISWDFLRDV 1898
              +S  RC +KID+ KA+DS+ W FL +V
Sbjct: 588  DTIS-TRCAIKIDISKAFDSVQWPFLINV 615



 Score =  240 bits (612), Expect(2) = e-127
 Identities = 127/355 (35%), Positives = 193/355 (54%), Gaps = 6/355 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            FIHW+  C+T+A+FS+ +NG   G+ +  RGLRQG  +SP LF++CM+ LS++       
Sbjct: 625  FIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAA 684

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
              F +H KC T  +THL+FADDL++   G   S++ +  V DEF   SGL ++  KS ++
Sbjct: 685  RHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVY 744

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G+    R E+   F FS G LPV+YLGLPL  K+L      PL++Q+   I  W +  
Sbjct: 745  LAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRF 804

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR  L+ SVL  +  FW+ +  LP      +  +   FLW      +    I+W  
Sbjct: 805  LSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHM 864

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTL-DPHP 987
            VC PKDEGGLGLR L   N     K++W I + ++SLW++WV    ++N  FW +     
Sbjct: 865  VCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVS 924

Query: 986  RDSPLVKNILDIRDLIISKCADDINQSKQLLESWFKGNGTADVYHFLRNHGEKTL 822
            + S + K +L  R++  +    ++   KQ    W+  +  +D+   L   G++ L
Sbjct: 925  QGSWIWKKLLKYREVAKTLSKVEVGNGKQ-TSFWY--DNWSDLGQLLERTGDRGL 976



 Score = 65.5 bits (158), Expect = 2e-07
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = -1

Query: 869  TADVYHFLRNHGEKTLWCRVIWKGFIPPKFSITLWFALHGRLKTVDRL--HFNPGSLWCV 696
            T D +H  R+   +  W +VIW     PK+S   W A HGRL T DR+    N  +  C+
Sbjct: 1040 TRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCI 1099

Query: 695  LCNLHNESHEHLFFKCPATAAVW 627
             C    E+ +HLFF C  T+ +W
Sbjct: 1100 FCQGTLETRDHLFFTCSFTSVIW 1122


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  246 bits (627), Expect(2) = e-126
 Identities = 122/314 (38%), Positives = 186/314 (59%), Gaps = 5/314 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            +I+W+  C+T+ +F++S+NG T GF +  +GLRQGDP+SP LF+L ME  S+L   R  +
Sbjct: 479  YINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDS 538

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
                +H K     I+HL FADD+++F  G S+S+  + + +D+F   SGL VN  KSQ+F
Sbjct: 539  GYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF 598

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G+   ER+     +GF  GT P++YLGLPL  +KL    + PL+++L++ +  W +  
Sbjct: 599  QAGLDLSERITSA-AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKA 657

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR +L+ SV+ G+  FW+ +  LP     +I SL  KFLW     G KS  ++W  
Sbjct: 658  LSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVD 717

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTLDPHPR 984
             CLPK EGGLG R    WNK L  +++W + ++  SLW +W     + +  FW ++    
Sbjct: 718  CCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQT 777

Query: 983  DSPLVKNILDIRDL 942
            D    K +L++R L
Sbjct: 778  DPWTWKMLLNLRPL 791



 Score =  236 bits (601), Expect(2) = e-126
 Identities = 152/479 (31%), Positives = 240/479 (50%), Gaps = 11/479 (2%)
 Frame = -2

Query: 3286 GDFNCVLDPSERVGIRT-PLEKEYKDFVDTAVYLSLEDAPSMGCHFTWTNSNTY----SK 3122
            GDFN VL P E     +  +++  +DF      + L D    G  FTW N ++      K
Sbjct: 3    GDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKK 62

Query: 3121 IDRFLINNSWQEARFACRANFLTRGTSSDHSACIASLFEQVPQFRKTFKFCNFWMDNPRF 2942
            +DR L N+SW    +            SDH +C   L       ++ FKF NF + N  F
Sbjct: 63   LDRILANDSWCNL-YPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDF 121

Query: 2941 KEILDSVWRCNNPRAQGQYLLSSKLKTLHKALWEMKIKEYNNLSEKVEASRAALQHIQQM 2762
              ++   W   N      Y +S KLK + K + +     Y+ +  + + +   L   Q +
Sbjct: 122  LNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQNL 181

Query: 2761 CDLDPL--NRELRDQEISIRKHCQFLDNAERSFFAQRNKTKHLTLFDKNSKFFYSKVNRA 2588
               +P   N  L   E+  ++    L  AE SFF QR++       D N+ +F+  V+  
Sbjct: 182  TLANPSVSNAAL---ELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSR 238

Query: 2587 NARNSISFLCREDGSITSDINIIIEDFTMFYNNLFGVSVPRSPLDWNAARSGPMLN--CT 2414
             + N+I+ L   +G +      I++    +Y  L G     SP          +L   C+
Sbjct: 239  KSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSI--ESPFSMEQEDMNLLLTYRCS 296

Query: 2413 EQ--SALVVPVDAKEIKDALFSIGNDKAPGPDGYPAPFFKKNWNEVGNDVLNAVSEFFTK 2240
            +   S L       EIK A  S+  +K  GPDGY   FF+  W+ +G +VL A+ EFF  
Sbjct: 297  QDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDS 356

Query: 2239 GLILRELNHTSISLIPKKSHEPTVADFRPIACTNVVYKTITKILTNRMAHLLHKLINHAQ 2060
            G +L++ N T++ LIPK S+  T+++FRPI+C N +YK I+K+LT+R+  LL  +I H+Q
Sbjct: 357  GQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQ 416

Query: 2059 SAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMVKIDLQKAYDSISWDFLRDVLFSLS 1883
            SAF+ GRS+ +N  LA E++  Y +  +S PR M+K+DL+KA+DS+ W+F+   L +L+
Sbjct: 417  SAFLPGRSLAENVLLATEMVHGYNRLNIS-PRGMLKVDLKKAFDSVKWEFVTAALRALA 474


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  246 bits (627), Expect(2) = e-126
 Identities = 122/314 (38%), Positives = 186/314 (59%), Gaps = 5/314 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            +I+W+  C+T+ +F++S+NG T GF +  +GLRQGDP+SP LF+L ME  S+L   R  +
Sbjct: 479  YINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDS 538

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
                +H K     I+HL FADD+++F  G S+S+  + + +D+F   SGL VN  KSQ+F
Sbjct: 539  GYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF 598

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G+   ER+     +GF  GT P++YLGLPL  +KL    + PL+++L++ +  W +  
Sbjct: 599  QAGLDLSERITSA-AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKA 657

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR +L+ SV+ G+  FW+ +  LP     +I SL  KFLW     G KS  ++W  
Sbjct: 658  LSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVD 717

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTLDPHPR 984
             CLPK EGGLG R    WNK L  +++W + ++  SLW +W     + +  FW ++    
Sbjct: 718  CCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQT 777

Query: 983  DSPLVKNILDIRDL 942
            D    K +L++R L
Sbjct: 778  DPWTWKMLLNLRPL 791



 Score =  236 bits (601), Expect(2) = e-126
 Identities = 152/479 (31%), Positives = 240/479 (50%), Gaps = 11/479 (2%)
 Frame = -2

Query: 3286 GDFNCVLDPSERVGIRT-PLEKEYKDFVDTAVYLSLEDAPSMGCHFTWTNSNTY----SK 3122
            GDFN VL P E     +  +++  +DF      + L D    G  FTW N ++      K
Sbjct: 3    GDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKK 62

Query: 3121 IDRFLINNSWQEARFACRANFLTRGTSSDHSACIASLFEQVPQFRKTFKFCNFWMDNPRF 2942
            +DR L N+SW    +            SDH +C   L       ++ FKF NF + N  F
Sbjct: 63   LDRILANDSWCNL-YPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDF 121

Query: 2941 KEILDSVWRCNNPRAQGQYLLSSKLKTLHKALWEMKIKEYNNLSEKVEASRAALQHIQQM 2762
              ++   W   N      Y +S KLK + K + +     Y+ +  + + +   L   Q +
Sbjct: 122  LNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQNL 181

Query: 2761 CDLDPL--NRELRDQEISIRKHCQFLDNAERSFFAQRNKTKHLTLFDKNSKFFYSKVNRA 2588
               +P   N  L   E+  ++    L  AE SFF QR++       D N+ +F+  V+  
Sbjct: 182  TLANPSVSNAAL---ELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSR 238

Query: 2587 NARNSISFLCREDGSITSDINIIIEDFTMFYNNLFGVSVPRSPLDWNAARSGPMLN--CT 2414
             + N+I+ L   +G +      I++    +Y  L G     SP          +L   C+
Sbjct: 239  KSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSI--ESPFSMEQEDMNLLLTYRCS 296

Query: 2413 EQ--SALVVPVDAKEIKDALFSIGNDKAPGPDGYPAPFFKKNWNEVGNDVLNAVSEFFTK 2240
            +   S L       EIK A  S+  +K  GPDGY   FF+  W+ +G +VL A+ EFF  
Sbjct: 297  QDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDS 356

Query: 2239 GLILRELNHTSISLIPKKSHEPTVADFRPIACTNVVYKTITKILTNRMAHLLHKLINHAQ 2060
            G +L++ N T++ LIPK S+  T+++FRPI+C N +YK I+K+LT+R+  LL  +I H+Q
Sbjct: 357  GQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQ 416

Query: 2059 SAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMVKIDLQKAYDSISWDFLRDVLFSLS 1883
            SAF+ GRS+ +N  LA E++  Y +  +S PR M+K+DL+KA+DS+ W+F+   L +L+
Sbjct: 417  SAFLPGRSLAENVLLATEMVHGYNRLNIS-PRGMLKVDLKKAFDSVKWEFVTAALRALA 474


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  244 bits (622), Expect(2) = e-122
 Identities = 168/563 (29%), Positives = 269/563 (47%), Gaps = 13/563 (2%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLWNPINXXXXXXXXXXXVIHARITCRITNSSFHLSLCYGFWDY 3356
            W    N+   + GRI ++W+P +           ++   I       SF ++  YG    
Sbjct: 55   WRMDSNYCCSELGRIWIVWDP-SISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSE 113

Query: 3355 VDRRPLWDSLILYT---PLDF-PAVVCGDFNCVLDPSERVGIRTPLE--KEYKDFVDTAV 3194
            +DRR LW+ +++ +   PL   P ++ GDFN +   SE   I   L   +  +D      
Sbjct: 114  LDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLR 173

Query: 3193 YLSLEDAPSMGCHFTWTNSNTYS----KIDRFLINNSWQEARFACRANFLTRGTSSDHSA 3026
               L D PS G  FTW+N    +    K+DR L N  W     +  A F   G  SDH+ 
Sbjct: 174  DSQLSDLPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPG-DSDHAP 232

Query: 3025 CIASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNPRAQGQYLLSSKLKTLHKAL 2846
            CI  +  Q P  +K+FK+ +F   +P +   L + W  N       + L   LK      
Sbjct: 233  CIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCC 292

Query: 2845 WEMKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQFLDNAERSFF 2666
              +    ++N+ ++   S   L+ IQ      P +   R + ++ RK   F   A  SFF
Sbjct: 293  RTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVA-RKQWIFFAAALESFF 351

Query: 2665 AQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDFTMFYNNL 2486
             Q+++ + L   D N++FF+  V    A N I FL  +DG    +++ I      +Y++L
Sbjct: 352  RQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHL 411

Query: 2485 FGV-SVPRSPLDWNAARSGPMLNCTE--QSALVVPVDAKEIKDALFSIGNDKAPGPDGYP 2315
             G+ S   +P      +      C     S L      +EI   LFS+  +KAPGPDG+P
Sbjct: 412  LGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFP 471

Query: 2314 APFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFRPIACTNV 2135
              FF + W  V + V+ A+ EFF  G + R  N T+I+LIPK +    +  FRP+AC   
Sbjct: 472  VEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTT 531

Query: 2134 VYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMV 1955
            +YK IT+I++ R+   + + +   Q  FIKGR + +N  LA EL+ N+E    +   C+ 
Sbjct: 532  IYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCL- 590

Query: 1954 KIDLQKAYDSISWDFLRDVLFSL 1886
            ++D+ KAYD+++W+FL ++L +L
Sbjct: 591  QVDISKAYDNVNWEFLINILKAL 613



 Score =  224 bits (572), Expect(2) = e-122
 Identities = 107/292 (36%), Positives = 167/292 (57%), Gaps = 5/292 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            FIHW+  C++SA++S++ NG   GF +G++G+RQGDPMS  LF+L M+ LS+   +   N
Sbjct: 619  FIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALN 678

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
              F  H  C    ITHL+FADD+L+F  G ++S+  +  ++D+F+  SGL +N  K+++ 
Sbjct: 679  GLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREKTELL 738

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G        +    G + G+LPV+YLG+PL ++K+    + PL+D++ S    W    
Sbjct: 739  LDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARH 798

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR +L+KSV+     FW      P     ++  +   FLW       +   I+W  
Sbjct: 799  LSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQKLEQMCNAFLWSGAPNSARGAKISWNI 858

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDF 1008
            VC PK+ GGLGL+ L++WN+ L  K++W +     SLW+ WV    I  R+F
Sbjct: 859  VCSPKEAGGLGLKRLSSWNRILALKLIWLLFTSAGSLWVSWVRLHLIGRRNF 910


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  259 bits (662), Expect(2) = e-119
 Identities = 158/462 (34%), Positives = 235/462 (50%), Gaps = 14/462 (3%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            FIHW+  C+++A+FS+ +NG           LRQG  +SP LF++CM  LS +       
Sbjct: 891  FIHWINLCISTASFSVQVNG-----------LRQGCSLSPYLFVICMNVLSAMLDKGAVE 939

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
              F +H +C    +THL FADD+++F  G++ SL+ +  +  +F   SGL ++  KS +F
Sbjct: 940  KRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLF 999

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
               +       IL  F F  G+LPV+YLGLPL  K++      PL++++ S I  W N  
Sbjct: 1000 MASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRF 1059

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-GTKSCP----IAWKK 1164
            LS AGR +L+ SV+  +  FWI +  LP +    I  +   FLW GT   P    +AW  
Sbjct: 1060 LSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWHD 1119

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTLDPHPR 984
            VC PK EGGLGLR L   NK    K++W + +   SLW+ W+ +  I+      L  H R
Sbjct: 1120 VCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWIQNNLIRT-VAEALSSHRR 1178

Query: 983  DSPLVKNILDIRD-----LIISKCADDINQSKQLLESWFKGN-GTADVYHFLRNHGEKTL 822
             S     + DI +     L    C +      + +   FK    + +++H +R  G    
Sbjct: 1179 RSHRDDILNDIEEELEKLLCRGICTEQDRSLCRSIGGQFKAKFFSPEIWHQIREQGLVKQ 1238

Query: 821  WCRVIWKGFIPPKFSITLWFALHGRLKTVDRL-HFNPG-SLWCVLCNLHNESHEHLFFKC 648
            W + IW     PKF+   W A H RL T D++  +N G S  CVLCN+  ES +HLFF C
Sbjct: 1239 WHKAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISAESRDHLFFSC 1298

Query: 647  PATAAVWGGI-KNWLKCKGQLTTISSAIRLFQRDKAGSGIRR 525
              ++ +W  + +  L C+   TT   A+ L    +  SG +R
Sbjct: 1299 NFSSHIWDRLTRRLLLCR--YTTNFPALLLLLSGQDFSGTKR 1338



 Score =  200 bits (509), Expect(2) = e-119
 Identities = 162/570 (28%), Positives = 255/570 (44%), Gaps = 20/570 (3%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLWNPINXXXXXXXXXXXVIHARITCRITNSSFHLSLCYGFWDY 3356
            W    N+E  + GRI ++W+  +           +I   +     +  F  S  Y     
Sbjct: 357  WQMVSNYEFNRLGRIWVVWSS-SVQLQVIFKSSQMIVCLVRVEHYDVEFICSFIYASNFV 415

Query: 3355 VDRRPLWDSLI-LYTPLDF---PAVVCGDFNCVLDPSER--VGIRTPLEKEYKDFVDTAV 3194
             +R+ LW  L  L   + F   P ++ GDFN  L   E     +   +    +DF     
Sbjct: 416  EERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPMVTPGMRDFQIVVR 475

Query: 3193 YLSLEDAPSMGCHFTWTNSNTYS----KIDRFLINNSWQEARFACRANFLTRGTSSDHSA 3026
            Y SLED  + G  FTW N         K+DR L+N  +  A +      +  G  SDH  
Sbjct: 476  YCSLEDMRTHGPLFTWGNKRNEGLICKKLDRVLLNPEYNSA-YPHSYCIMDSGGCSDHLR 534

Query: 3025 CIASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNN---PRAQGQYLLSSKLKTLH 2855
                L   + + +  FKF N    +P F   ++  W+      P     +  S KLK L 
Sbjct: 535  GRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKVEDFWKNTTELFPSTSTLFRFSKKLKELK 594

Query: 2854 KALWEMKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQFLDNAER 2675
              L ++     NNLS+    +R A    +++C         + + ++       +D  E 
Sbjct: 595  PILKDLS---RNNLSD---LTRRATYAYEELC-------RCQTKSLTTLNPHDIVD--ES 639

Query: 2674 SFFAQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDFTMFY 2495
              F +  K +HL                    N+I  +    G+   + + I  +   F+
Sbjct: 640  LAFERWEKERHLL-------------------NAIHEVMDPQGTRPPNQDDIKIEAVRFF 680

Query: 2494 NNLFGVSVPRSPLDWNAARSGPM-------LNCTEQSALVVPVDAKEIKDALFSIGNDKA 2336
            ++L        P D+       +        +  EQ+ LV  +   E+    FSI  +K+
Sbjct: 681  SDLLS----SQPSDFTGISVDELKGILQYRYSLHEQNLLVAEITEAEVMKVFFSIPLNKS 736

Query: 2335 PGPDGYPAPFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFR 2156
            PGPDGY   FF++ W+ +G +V  A+  FFT G + + LN T ++LIPK+++   + D+R
Sbjct: 737  PGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYR 796

Query: 2155 PIACTNVVYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVL 1976
            PI+C NV+YK I+K+L NR+  LL + I   QSAFI  R + +N  LA EL+++Y K  L
Sbjct: 797  PISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGL 856

Query: 1975 SPPRCMVKIDLQKAYDSISWDFLRDVLFSL 1886
            S PRC +KIDL KA+DS+ W FL + L +L
Sbjct: 857  S-PRCAMKIDLSKAFDSVQWPFLLNTLAAL 885


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  251 bits (642), Expect(2) = e-118
 Identities = 174/560 (31%), Positives = 282/560 (50%), Gaps = 17/560 (3%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLWNPINXXXXXXXXXXXVIHARITCRITNSSFHLSLCYGFWDY 3356
            W F  N+E    G+I +LW+P +           +I   +    + S F +S+ Y   + 
Sbjct: 57   WSFVENYEFSVLGKIWVLWDP-SVKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEE 115

Query: 3355 VDRRPLWDSLI--LYTPLDFPA--VVCGDFNCVLDPSERVGIRTPLEKEYKDFVDTAVYL 3188
              R+ LW+ L+    +P+      +V GDFN +L+P     I   + ++ + F    +  
Sbjct: 116  GTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPES--AINANIGRKIRAFRSCLLDS 173

Query: 3187 SLEDAPSMGCHFTWTNSNTY----SKIDRFLINNSWQEARFACRANFLTRGTSSDHSACI 3020
             L D    G  +TW N  +      KIDR L+N+ W     +  ANF      SDHS+C 
Sbjct: 174  DLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANF-GEPDFSDHSSCE 232

Query: 3019 ASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNPRAQGQYLLSSKLKTLHKALWE 2840
              L   V + ++ F+F N+++ NP F +++   W   N      Y +S KLK L   +  
Sbjct: 233  VVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICC 292

Query: 2839 MKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQFLDNAERSFFAQ 2660
               + Y+++ ++V  + A + H Q++   +P +      E+   +  Q L  AE SFF Q
Sbjct: 293  FSRENYSDIEKRVSEAHAIVLHRQRITLTNP-SVVHATLELEATRKWQILAKAEESFFCQ 351

Query: 2659 RNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDF-----TMFY 2495
            ++    L   D N+ +F+   +   + N+I+FL  + G        I E         F 
Sbjct: 352  KSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFE 411

Query: 2494 NNLFGVSVPRS--PLDWNAARSGPMLNCT--EQSALVVPVDAKEIKDALFSIGNDKAPGP 2327
            + L GV    S    D N   S     C+  + + L       +I++A FS+  +KA GP
Sbjct: 412  SLLCGVEGENSLAQSDMNLLLS---FRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGP 468

Query: 2326 DGYPAPFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFRPIA 2147
            DGY + FFK  W  VG +V  AV EFF  G +L++ N T++ LIPK ++   + DFRPI+
Sbjct: 469  DGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPIS 528

Query: 2146 CTNVVYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVLSPP 1967
            C N +YK I K+LT+R+  LL+++I+ +QSAF+ GR +++N  LA E++  Y  K +S  
Sbjct: 529  CLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNIS-S 587

Query: 1966 RCMVKIDLQKAYDSISWDFL 1907
            R M+K+DL+KA+DS+ WDF+
Sbjct: 588  RGMLKVDLRKAFDSVRWDFI 607



 Score =  204 bits (520), Expect(2) = e-118
 Identities = 107/278 (38%), Positives = 155/278 (55%), Gaps = 5/278 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            F+ W+  C+++  FS+ +NG + GF K  +GLRQGDP+SP LF+L ME  S L   R   
Sbjct: 620  FVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDA 679

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
                +H K     I+HL FADD+++F  G S+SL  +++ +D+F   SGL VN  K+ ++
Sbjct: 680  GYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLY 739

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G    E + I   +GF   TLP++YLGLPL ++KL    +     +L      W    
Sbjct: 740  LAGTDEVEALAIS-HYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAVKS 793

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR +L+ SV+ G+  FW+ +  L      +I SL  +FLW      +K   IAW  
Sbjct: 794  LSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSG 853

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLW 1050
            VCLPK+EGG+GLR    WNK  + + +W +    D LW
Sbjct: 854  VCLPKNEGGVGLRRFTPWNKTFYLRFIWPLFADNDVLW 891


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  251 bits (642), Expect(2) = e-118
 Identities = 174/560 (31%), Positives = 282/560 (50%), Gaps = 17/560 (3%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLWNPINXXXXXXXXXXXVIHARITCRITNSSFHLSLCYGFWDY 3356
            W F  N+E    G+I +LW+P +           +I   +    + S F +S+ Y   + 
Sbjct: 57   WSFVENYEFSVLGKIWVLWDP-SVKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEE 115

Query: 3355 VDRRPLWDSLI--LYTPLDFPA--VVCGDFNCVLDPSERVGIRTPLEKEYKDFVDTAVYL 3188
              R+ LW+ L+    +P+      +V GDFN +L+P     I   + ++ + F    +  
Sbjct: 116  GTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPES--AINANIGRKIRAFRSCLLDS 173

Query: 3187 SLEDAPSMGCHFTWTNSNTY----SKIDRFLINNSWQEARFACRANFLTRGTSSDHSACI 3020
             L D    G  +TW N  +      KIDR L+N+ W     +  ANF      SDHS+C 
Sbjct: 174  DLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANF-GEPDFSDHSSCE 232

Query: 3019 ASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNPRAQGQYLLSSKLKTLHKALWE 2840
              L   V + ++ F+F N+++ NP F +++   W   N      Y +S KLK L   +  
Sbjct: 233  VVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICC 292

Query: 2839 MKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQFLDNAERSFFAQ 2660
               + Y+++ ++V  + A + H Q++   +P +      E+   +  Q L  AE SFF Q
Sbjct: 293  FSRENYSDIEKRVSEAHAIVLHRQRITLTNP-SVVHATLELEATRKWQILAKAEESFFCQ 351

Query: 2659 RNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDF-----TMFY 2495
            ++    L   D N+ +F+   +   + N+I+FL  + G        I E         F 
Sbjct: 352  KSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFE 411

Query: 2494 NNLFGVSVPRS--PLDWNAARSGPMLNCT--EQSALVVPVDAKEIKDALFSIGNDKAPGP 2327
            + L GV    S    D N   S     C+  + + L       +I++A FS+  +KA GP
Sbjct: 412  SLLCGVEGENSLAQSDMNLLLS---FRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGP 468

Query: 2326 DGYPAPFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFRPIA 2147
            DGY + FFK  W  VG +V  AV EFF  G +L++ N T++ LIPK ++   + DFRPI+
Sbjct: 469  DGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPIS 528

Query: 2146 CTNVVYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVLSPP 1967
            C N +YK I K+LT+R+  LL+++I+ +QSAF+ GR +++N  LA E++  Y  K +S  
Sbjct: 529  CLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNIS-S 587

Query: 1966 RCMVKIDLQKAYDSISWDFL 1907
            R M+K+DL+KA+DS+ WDF+
Sbjct: 588  RGMLKVDLRKAFDSVRWDFI 607



 Score =  203 bits (516), Expect(2) = e-118
 Identities = 106/278 (38%), Positives = 155/278 (55%), Gaps = 5/278 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            F+ W+  C+++  FS+ +NG + GF K  +GLRQGDP+SP LF+L ME  S L   R   
Sbjct: 620  FVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDA 679

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
               ++H K     I+HL FADD+++F  G S+SL  +++ +D+F   SGL VN  K+ ++
Sbjct: 680  GYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLY 739

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G    E + I   +GF   TLP++YLGLPL ++KL    +     +L      W    
Sbjct: 740  LAGTDEVEALAIS-HYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAVKS 793

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR +L+ SV+ G+  FW+ +  L      +I SL  +FLW      +K   IAW  
Sbjct: 794  LSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSG 853

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLW 1050
            VCLPK+EGG+ LR    WNK  + + +W +    D LW
Sbjct: 854  VCLPKNEGGVALRRFTPWNKTFYLRFIWPLFADNDVLW 891


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  249 bits (636), Expect(2) = e-115
 Identities = 161/520 (30%), Positives = 271/520 (52%), Gaps = 18/520 (3%)
 Frame = -2

Query: 3400 NSSFHLSLCYGFWDYVDRRPLWDSLILYTPL----DFPAVVCGDFNCVLDPSERVGIRT- 3236
            + S  +S+ Y   + + R+ LW+ L+L +        P ++ GDFN VL P+E     + 
Sbjct: 50   DDSVVVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSL 109

Query: 3235 PLEKEYKDFVDTAVYLSLEDAPSMGCHFTWTNSNTY----SKIDRFLINNSWQEARFACR 3068
             + +  K F D      L D    G  FTW N +       K+DR L+N SW  +RF   
Sbjct: 110  NVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWC-SRFPSA 168

Query: 3067 ANFLTRGTSSDHSACIASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNPRAQGQ 2888
                     SDH++C   +   + + ++ F+F NF + NP F  ++  +W   N      
Sbjct: 169  YAVFGEPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSM 228

Query: 2887 YLLSSKLKTLHKALWEMKIKEYNNLSEKVEASRAALQHIQQMCDLDPL--NRELRDQEIS 2714
            + +S KLK L   +    ++ ++NL ++V+ +   + + Q     DP   N  L   E+ 
Sbjct: 229  FKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAAL---EME 285

Query: 2713 IRKHCQFLDNAERSFFAQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITS 2534
             ++    L  AE SFF QR++   +   D N+ +F+   +   A N+I  +  +D  +  
Sbjct: 286  AQRKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIII-DDNGVKI 344

Query: 2533 DINIIIEDFTM-FYNNLFGVSVPRSPLDWNAARSGPMLNCT--EQSALVVPVDAKEIKDA 2363
            D  + I++  + +++NL G  V    L            C+  ++  L +    ++IK A
Sbjct: 345  DTQLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSA 404

Query: 2362 LFSIGNDKAPGPDGYPAPFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKS 2183
             FS  ++K  GPDG+P  FFK+ W+ +G +V +AVSEFFT  ++L++ N T++ LIPK +
Sbjct: 405  FFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKIT 464

Query: 2182 HEPTVADFRPIACTN----VVYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFL 2015
            +   + DFRPI+C +     +YK I ++LTNR+  LL ++I+  QSAF+ GR + +N  L
Sbjct: 465  NASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLL 524

Query: 2014 AQELIRNYEKKVLSPPRCMVKIDLQKAYDSISWDFLRDVL 1895
            A EL++ Y ++ +  PR M+K+DL+KA+DSI WDF+   L
Sbjct: 525  ATELVQGYNRQNID-PRGMLKVDLRKAFDSIRWDFIISAL 563



 Score =  197 bits (502), Expect(2) = e-115
 Identities = 137/452 (30%), Positives = 201/452 (44%), Gaps = 38/452 (8%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            F++W+  C+++ TFS+ +NG T GF K  RGLRQG+P+SP LF+L ME  S L   R   
Sbjct: 572  FVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQA 631

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
                +H K     I+HL FADD+++F  G S+SL  +++ +++F   SGL +N  K+ ++
Sbjct: 632  GYIHYHPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLY 691

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G+   E   I                     A+KL    + PL+++L      W+  C
Sbjct: 692  LAGLDRIEASTI---------------------ARKLRIAEYGPLLEKLAKRFRSWSVKC 730

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLWG-----TKSCPIAWKK 1164
            LS AGR +L+ SV+ G+  FWI +  LP     RI +L  +FLW       K   +AW +
Sbjct: 731  LSFAGRVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSE 790

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWI-RW-----VHSEF-------- 1026
            VCLPK+EGG+GLR     N       LW+   K  S W   W     +   F        
Sbjct: 791  VCLPKEEGGVGLRRFTVLNTT-----LWD--GKKISFWFDNWSPLGPLFKLFGSSGPRAL 843

Query: 1025 -----IKNRDF-----WTLDPHPRDSPLVKNILDIRDLIISKCADDINQSKQLLESWFKG 876
                  K  D      W + P   D  L   +L     I   C D    +   +   F  
Sbjct: 844  CIPIQAKVADACSDVGWLISPPRTDQALA--LLIHLTTIALPCFDSSPDTFVWIVDDFTC 901

Query: 875  NG--TADVYHFLRNHGEKTLWCRVIWKGFIPPKFSITLWFALHGRLKTVDRLHFNPGSLW 702
            +G   A  +  +R       W + +W     PK +  +W +   RL T  RL     + W
Sbjct: 902  HGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRL-----AAW 956

Query: 701  -------CVLCNLHNESHEHLFFKCPATAAVW 627
                   C LC+   ES +HL   C  +A +W
Sbjct: 957  GVTTTTDCCLCSSRPESRDHLLLYCVFSAVIW 988


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  256 bits (653), Expect(2) = e-115
 Identities = 156/499 (31%), Positives = 235/499 (47%), Gaps = 85/499 (17%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            FIHW+  C+ +A+FS+ +NG   GF +  RGLRQG  +SP L+++CM  LS +       
Sbjct: 772  FIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVE 831

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
                +H +C    +THL FADD+++F  G S S+Q    + ++F   S L ++  KS IF
Sbjct: 832  KKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIF 891

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              G+    +  IL  F F  GTLPVKYLGLPL  K++    + PL++++ + I  W N  
Sbjct: 892  MAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRF 951

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLWG-----TKSCPIAWKK 1164
            LS AGR +L+KSVL  +  FW+    LP +    I  +   FLW      TK   IAW +
Sbjct: 952  LSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSE 1011

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIR-------------------- 1044
            VC  K+EGGLGL+ L   N+    K++W I +  DSLW++                    
Sbjct: 1012 VCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTG 1071

Query: 1043 ---WVHSEFIKNRD-----------------FW------------------TLDPHPRDS 978
               W+  + +K RD                 FW                  T+D    ++
Sbjct: 1072 LGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNN 1131

Query: 977  PLVKNILDIRDLIISKCADDINQSKQLLES-------------W------FKGN-GTADV 858
              V  +++       + AD +NQ K  +E              W      FK +  ++  
Sbjct: 1132 ATVAEVMNTHRRKRHR-ADFLNQIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKT 1190

Query: 857  YHFLRNHGEKTLWCRVIWKGFIPPKFSITLWFALHGRLKTVDRL-HFNPGSLW-CVLCNL 684
            +  +R+   +  W R +W     PK+S   W A H RL T D++  +N G+ + CV C  
Sbjct: 1191 WQQIRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGE 1250

Query: 683  HNESHEHLFFKCPATAAVW 627
              E+ +HLFF CP ++ VW
Sbjct: 1251 ELETRDHLFFSCPYSSHVW 1269



 Score =  189 bits (480), Expect(2) = e-115
 Identities = 161/568 (28%), Positives = 239/568 (42%), Gaps = 21/568 (3%)
 Frame = -2

Query: 3535 WDFCHNFELVKNGRILLLWNPINXXXXXXXXXXXVIHARITCRITNSS----FHLSLCYG 3368
            W    N+E  + GRI ++W   N            +   ITC +        F +S  Y 
Sbjct: 292  WSSMTNYEHHRLGRIWVVWK--NTVRVTPVYKSGQL---ITCSVLTEENAEDFFVSFIYA 346

Query: 3367 FWDYVD-RRPLWDSLILYTPLDFPA------VVCGDFNCVLDPSERVG-IRTP-LEKEYK 3215
              +YVD RR LW+ L  +   D P       ++ GDFN +LD  +    + +P + +  +
Sbjct: 347  S-NYVDERRELWEDLRNH--YDLPMFRNKGWMILGDFNEILDGEDHSNFVNSPFIPQGMR 403

Query: 3214 DFVDTAVYLSLEDAPSMGCHFTWTNSN----TYSKIDRFLINNSWQEARFACRANFLTRG 3047
            DF D   Y SL D    G  FTW N         K+DR L+N  W   +F    +    G
Sbjct: 404  DFQDVVRYCSLADMSYHGPVFTWCNKREEGLVNKKLDRVLVNEVWTR-KFPAVYSIFEAG 462

Query: 3046 TSSDHSACIASLFEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCN----NPRAQGQYLL 2879
              SDH  C         Q +  FKF N     P F +I+   W       +P +   +  
Sbjct: 463  GISDHLRCRIKFASGNTQPKGPFKFNNVLTTLPEFLQIVKDFWDGTLALFHPTS-AMFRF 521

Query: 2878 SSKLKTLHKALWEMKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHC 2699
            S KLK L   L  +     +NLS +V  +  +L                           
Sbjct: 522  SKKLKGLKPILKSLGRSTLHNLSVRVAEAYTSLY-------------------------- 555

Query: 2698 QFLDNAERSFFAQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINII 2519
                  E  +  Q++K   L + DKN+K+F++ V    A NSI  +   DG +       
Sbjct: 556  -----LEEGYLQQKSKLHWLDVGDKNNKYFHNSVKARVAMNSIREIQCTDGRV------- 603

Query: 2518 IEDFTMFYNNLFGVSVPRSPLDWNAARSGPMLNCTEQSALVVPVDAKEIKDALFSIGNDK 2339
                                             CT            +IK+        K
Sbjct: 604  ---------------------------------CTSHD---------DIKEEAH-----K 616

Query: 2338 APGPDGYPAPFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADF 2159
            +PGPDGY   FFK  W  +G D++ A+  FF KG + + +N T ++LI KK     + D+
Sbjct: 617  SPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDY 676

Query: 2158 RPIACTNVVYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKV 1979
            RPI+C NV+YK ++K++ NR+  +L   I   QSAFIK R + +N  LA EL+++Y K+ 
Sbjct: 677  RPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKES 736

Query: 1978 LSPPRCMVKIDLQKAYDSISWDFLRDVL 1895
            +S  R  +KID+ KA+D + W FL +VL
Sbjct: 737  IS-SRSALKIDISKAFDFVQWPFLINVL 763


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  236 bits (602), Expect(2) = e-113
 Identities = 120/315 (38%), Positives = 178/315 (56%), Gaps = 6/315 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            F HW+  C+++ATFS+ +NG   GF    RGLRQG  +SP LF++CM  LS +      +
Sbjct: 922  FRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVH 981

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
             +  +H KC+   +THL FADDL++F  G+  S++ + +V  EF G SGL ++  KS I+
Sbjct: 982  RNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIY 1041

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              GV   +R++ L  F F+ G LPV+YLGLPL  K++    ++PLI+ + + I  W    
Sbjct: 1042 LAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARS 1101

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR  L+ SV+  +  FW+ +  LPA     I  L   FLW       K   IAW  
Sbjct: 1102 LSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSS 1161

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTLDPHPR 984
            +C PK EGGLG++ LA  NK    K++W + +   SLW+ W+ +  I+   FW+ +    
Sbjct: 1162 ICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSS 1221

Query: 983  -DSPLVKNILDIRDL 942
              S + K +L  R+L
Sbjct: 1222 LGSWMWKKLLKYREL 1236



 Score =  203 bits (516), Expect(2) = e-113
 Identities = 125/379 (32%), Positives = 194/379 (51%), Gaps = 10/379 (2%)
 Frame = -2

Query: 2989 RKTFKFCNFWMDNPRFKEILDSVWRCNNP---RAQGQYLLSSKLKTLHKALWEMKIKEYN 2819
            RK FKF N     P+F  +++S W  + P        Y  S KLKTL   L E+  ++  
Sbjct: 545  RKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLG 604

Query: 2818 NLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRKHCQFLDNAERSFFAQRNKTKHL 2639
            +L ++   +   L   Q     +P ++E   +E+        L   E  F  Q++K   +
Sbjct: 605  DLPKRTREAHILLCEKQATTLANP-SQETIAEELKAYTDWTHLSELEEGFLKQKSKLHWM 663

Query: 2638 TLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIIIEDFTMFYNNLFGVSVPRSP 2459
             + D N+ +F+        RNSI  +   +         I  +   F+N        R  
Sbjct: 664  NVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLN----RQS 719

Query: 2458 LDWNAARSGPMLNC-------TEQSALVVPVDAKEIKDALFSIGNDKAPGPDGYPAPFFK 2300
             D++      + N        T+Q+ L   V  +EI+  LF++ N+K+PGPDGY + FFK
Sbjct: 720  GDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFK 779

Query: 2299 KNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFRPIACTNVVYKTI 2120
              W+  G D + A+  FF KG + + LN T ++LIPKK     + D+RPI+C NV+YK I
Sbjct: 780  ATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVI 839

Query: 2119 TKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMVKIDLQ 1940
            +KIL NR+  LL   I   QSAF+K R + +N  LA EL+++Y K+ ++ PRC +KID+ 
Sbjct: 840  SKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVT-PRCAMKIDIS 898

Query: 1939 KAYDSISWDFLRDVLFSLS 1883
            KA+DS+ W FL + L +L+
Sbjct: 899  KAFDSVQWQFLLNTLEALN 917



 Score = 65.1 bits (157), Expect = 2e-07
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
 Frame = -1

Query: 920  DINQSKQLLESWFKGNGTADVYHFLRNHGEKTLWCRVIWKGFIPPKFSITLWFALHGRLK 741
            DI+  + L   + K   T   ++ +R H  +  W + +W  +  PK+S  LW  +  RL 
Sbjct: 1321 DISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLS 1380

Query: 740  TVDRLH-FNPGSL-WCVLCNLHNESHEHLFFKCPATAAVW 627
            T DR+  +N G L  C LCN   E+ +HLFF C  T+ VW
Sbjct: 1381 TGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVW 1420


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  246 bits (629), Expect(2) = e-108
 Identities = 151/504 (29%), Positives = 237/504 (47%), Gaps = 87/504 (17%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            FIHW+  C+++A+FS+ +NG   G+ +  RGLRQG  +SP LF++ M+ LSR+       
Sbjct: 346  FIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGA 405

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
             +F +H +C T  +THL FADDL++   G   S+  +  V+++F    GL +   K+ ++
Sbjct: 406  REFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLY 465

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              GV  + R  +   + F  G LPV+YLGLPL  K+L    ++PLIDQ+   I  W +  
Sbjct: 466  LAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRY 525

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLWG-----TKSCPIAWKK 1164
            LS AGR  L+ SVL  +  FW+ +  LP    + IN +    LW       K   ++W +
Sbjct: 526  LSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDE 585

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIR-------------------- 1044
            +C PK EGGLGL+ L   NK    K++W + +  DSLW++                    
Sbjct: 586  ICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHST 645

Query: 1043 ---WVHSEFIKNRD-----------------FWTLDPHPRDSPLVKNILDIR---DLIIS 933
               W+    +K+R+                 FW  D      PL+ N+   R   D+ IS
Sbjct: 646  LGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFW-FDNWSEKGPLI-NLTGARGAIDMGIS 703

Query: 932  KC----------------ADDINQSKQLL--------------------ESWFKGN-GTA 864
            +                  + +N+ +++L                    E  FK    T 
Sbjct: 704  RHMTLAEAWSRRRRKRHRVEILNEFEEILLQKYQHRNIELEDAILWRGKEDVFKARFSTK 763

Query: 863  DVYHFLRNHGEKTLWCRVIWKGFIPPKFSITLWFALHGRLKTVDR-LHFNPGS-LWCVLC 690
            D ++ +R    +  W + +W     PKFS   W A+  RL T DR + +N G+   CV C
Sbjct: 764  DTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFC 823

Query: 689  NLHNESHEHLFFKCPATAAVWGGI 618
            +   E+ +HLFF+C  ++ +W  I
Sbjct: 824  SSPMETRDHLFFQCCYSSEIWTSI 847



 Score =  176 bits (447), Expect(2) = e-108
 Identities = 96/252 (38%), Positives = 146/252 (57%), Gaps = 3/252 (1%)
 Frame = -2

Query: 2629 DKNSKFFYSKVNRANARNSISFLCREDGSI-TSDINIIIEDFTMFYNNLFGVSVPRSPLD 2453
            D+N+K F+  +    A NSI  +   DG + TS  +I  E    F + L  +      + 
Sbjct: 91   DRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEGMC 150

Query: 2452 WNAARSGPMLNCTEQS--ALVVPVDAKEIKDALFSIGNDKAPGPDGYPAPFFKKNWNEVG 2279
                 +     C+E     L   V  +EIK  +FS+  DK+PGPDGY + F+K +W  +G
Sbjct: 151  VEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIG 210

Query: 2278 NDVLNAVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFRPIACTNVVYKTITKILTNR 2099
            ++V+ A+  FF KG + + +N T ++LIPKK     + D+RPI+C NV+YK I+KIL NR
Sbjct: 211  DEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANR 270

Query: 2098 MAHLLHKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMVKIDLQKAYDSIS 1919
            +  +L K I   QSAF+K R + +N  LA EL+++Y K  +S  RC +KID+ KA+DS+ 
Sbjct: 271  LKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSIS-TRCAMKIDISKAFDSLQ 329

Query: 1918 WDFLRDVLFSLS 1883
            W FL  VL +++
Sbjct: 330  WSFLTHVLAAMN 341


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  259 bits (661), Expect(2) = e-105
 Identities = 155/423 (36%), Positives = 221/423 (52%), Gaps = 10/423 (2%)
 Frame = -1

Query: 1865 IHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVR-TWN 1689
            I W+ +C++SA FS+ +NG   GF   RRGLRQGDP+SP LF++ ME LS     R   +
Sbjct: 447  IGWIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCS 506

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
            P F++H +CD   ++HL FADDLLMF  G+  S++ L D    F+  S L  N S+S+IF
Sbjct: 507  PCFRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIF 566

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              GV G     +L +  FS GT PV+YLG+PL   KL     +PL+D++ + I  W N  
Sbjct: 567  LAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKV 626

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR +L++SVL  ++ +W   L LP  +   I   LR FLW     G  +  +AW +
Sbjct: 627  LSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSE 686

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTLDPHPR 984
            +CLPK EGGLG++DL  WNKAL    +WN+ + + + W  WV    +K   FW       
Sbjct: 687  ICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSI 746

Query: 983  DSPLVKNILDIRDLIISKCADDINQSKQLLESWFKGNGTADVYHFLRNHGEKTL-W-CRV 810
             S   + +L IR+L  S   + I   +     WF      D +H L   G  TL W   +
Sbjct: 747  CSWNWRKLLKIRELCCSFFVNIIGDGR-ATSLWF------DNWHPL---GPLTLRWSSNI 796

Query: 809  IWKGFIPPKFSITL--WFALHGRLKTVDRLHFNPGSLWCVLCNLHNESHEHLFFKCPATA 636
            I +  +     +T   +++      T+    F     W  L     E+H HLFF C  + 
Sbjct: 797  IGESGLSKSAMLTPNGFYSTSSAWNTLRPSRFIVP--WYRLVWFVAETHNHLFFDCAYSF 854

Query: 635  AVW 627
             +W
Sbjct: 855  GIW 857



 Score =  154 bits (390), Expect(2) = e-105
 Identities = 119/413 (28%), Positives = 185/413 (44%), Gaps = 2/413 (0%)
 Frame = -2

Query: 3139 SNTYSKIDRFLINNSWQEARFACRANFLTRGTSSDHSACIASLFEQVPQFRKTFKFCNFW 2960
            +N   + +  L N+   +  ++   +FL  G S DH+A +  +       +  FKF NF 
Sbjct: 116  TNAMDEFNSCLHNSKLDDLNYSV-LSFLPPGIS-DHAAMVVKVGLPFRIRKAPFKFFNFL 173

Query: 2959 MDNPRFKEILDSVWRCNNPRAQGQYLLSSKLKTLHKALWEMKIKEYN-NLSEKVEASRAA 2783
             D   F  I+ +VW   N     Q+ +  KLK     L + + K  N N+ EK+   ++ 
Sbjct: 174  ADREDFIPIVSAVW-ATNVWGSKQFQVWRKLK-----LVKNQFKLLNCNVVEKLLKKKSR 227

Query: 2782 LQHIQQMCDLDPLNRELRDQEISIRKHCQFLDNAERSFFAQRNKTKHLTLFDKNSKFFYS 2603
            +Q +++                                             DKNS FF+ 
Sbjct: 228  VQWLKKG--------------------------------------------DKNSTFFFK 243

Query: 2602 KVNRANARNSISFLCREDGSITSDINIIIEDFTMFYNNLFGVSVPRSPLDWNAARSGPML 2423
             + +   RN I+ + R DG   +    +  +FT                           
Sbjct: 244  TMTKHRNRNRIATINRSDGPDLA--KSLCNEFTH-------------------------- 275

Query: 2422 NCTEQSALVVPVDAKEIKDALFSIGNDKAPGPDGYPAPFFKKNWNEVGNDVLNA-VSEFF 2246
                           +I+   FS+  +K+PGPDG+   FF+K W  +G++V+ A V EFF
Sbjct: 276  --------------DDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFF 321

Query: 2245 TKGLILRELNHTSISLIPKKSHEPTVADFRPIACTNVVYKTITKILTNRMAHLLHKLINH 2066
            + G +L ELN T I+L+PK ++  T++DFRPI+C N  YK I K+L NR+   LH ++  
Sbjct: 322  SYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGP 381

Query: 2065 AQSAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMVKIDLQKAYDSISWDFL 1907
            +QS FI GR I DN  LAQE+I +Y  K    PRC   +D+ KA D++ WDF+
Sbjct: 382  SQSTFIPGRRIGDNILLAQEIICDYH-KADGQPRCTFMVDMMKANDTVEWDFI 433


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  227 bits (579), Expect(2) = e-103
 Identities = 163/518 (31%), Positives = 257/518 (49%), Gaps = 28/518 (5%)
 Frame = -2

Query: 3352 DRRPLWDSLILYTPLDF----PAVVCGDFNCVLDPSERVGIR-TPLEKE-YKDFVDTAVY 3191
            +R+ LW+ L  ++        P ++ GDFN +LD  E    R  P+     +DF     +
Sbjct: 3    ERKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNH 62

Query: 3190 LSLEDAPSMGCHFTWTNSNTYS----KIDRFLINNSWQEARFACRANFLTRGTSSDHSAC 3023
             S+ D    G  FTW+N         K+DR L+N+ W ++ F    +    G  SDH  C
Sbjct: 63   CSITDLAYHGPLFTWSNKRENDLIAKKLDRVLVNDVWLQS-FPRSYSVFEAGGCSDHLRC 121

Query: 3022 IASL---FEQVPQFRKTFKFCNFWMDNPRFKEILDSVWRCNNP---RAQGQYLLSSKLKT 2861
              +L      V + ++ FKF N   +   F   ++S W             +  S KLK 
Sbjct: 122  RINLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKG 181

Query: 2860 LHKALWEMKIKEYNNLSEKVEASRAALQHIQQMCDLDPLNRELRDQEISIRK--HCQFLD 2687
            L   L  +  +   NL ++ + +   L   Q M   +P    ++++  +  K  H   L 
Sbjct: 182  LKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSMQEENEAYAKWDHIAVL- 240

Query: 2686 NAERSFFAQRNKTKHLTLFDKNSKFFYSKVNRANARNSISFLCREDGSITSDINIII--- 2516
              E  F  QR+K   L + D+N+K F+  V    A+NSI  +   DGS+ S    I    
Sbjct: 241  --EEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEA 298

Query: 2515 -----EDFTMFYNNLFGVSVP--RSPLDWNAARSGPMLNCTEQSALVVPVDAKEIKDALF 2357
                 E   +  N+  G++V   +  L +  + S       ++  L   V A+EI   +F
Sbjct: 299  EHHFREFLQLIPNDFEGIAVEELQDLLPYRCSDS-------DKEMLTNHVSAEEIHKVVF 351

Query: 2356 SIGNDKAPGPDGYPAPFFKKNWNEVGNDVLNAVSEFFTKGLILRELNHTSISLIPKKSHE 2177
            S+ NDK+PGPDGY A F+K  WN +G + + A+  FF KG + + +N T ++LIPKK   
Sbjct: 352  SMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEA 411

Query: 2176 PTVADFRPIACTNVVYKTITKILTNRMAHLLHKLINHAQSAFIKGRSITDNFFLAQELIR 1997
              + D+RPI+C NV+YK I+KI+ NR+  +L K I   QSAF+K R + +N  LA E+++
Sbjct: 412  KEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVK 471

Query: 1996 NYEKKVLSPPRCMVKIDLQKAYDSISWDFLRDVLFSLS 1883
            +Y K  +S  RC +KID+ KA+DS+ W FL +VL +++
Sbjct: 472  DYHKDSVS-SRCALKIDISKAFDSVQWKFLINVLEAMN 508



 Score =  177 bits (450), Expect(2) = e-103
 Identities = 108/326 (33%), Positives = 157/326 (48%), Gaps = 9/326 (2%)
 Frame = -1

Query: 1874 PCFIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRT 1695
            P F HW+  C+T+A+FS+ +NG   G     R LRQG  +SP LF++ M+ LS++     
Sbjct: 511  PEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAV 570

Query: 1694 WNPDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQ 1515
                F +H KC    +THL+FADDL++   G   S+  +  V+ EF   SGL ++  KS 
Sbjct: 571  GARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKST 630

Query: 1514 IFFGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNN 1335
            ++  GV      EI+  F F  G LPV+YLGLPL +K+L      PLI+QL   I  W +
Sbjct: 631  MYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTS 690

Query: 1334 SCLSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAW 1170
              LS AGR  L+ S L  +  FW+ +  LP +    I+ L   FLW      +    ++W
Sbjct: 691  RFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLWSGTELSSNKAKVSW 750

Query: 1169 KKVCLPKDEGGLGLRDLATWNKALHTKILWNIH---NKTDSLWIR-WVHSEFIKNRDFWT 1002
            + +C PK E          W+K      +W  H     +  +W+  W      +    W 
Sbjct: 751  EAICKPKKE---------AWHKG-----VWFAHETPKHSFCVWLAIWNKLSTGQRMQHWN 796

Query: 1001 LDPHPRDSPLVKNILDIRDLIISKCA 924
            L        L  N L+ RD +   CA
Sbjct: 797  LQSSV-GCVLCNNNLETRDHLFFSCA 821


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  239 bits (609), Expect(2) = e-102
 Identities = 124/317 (39%), Positives = 181/317 (57%), Gaps = 6/317 (1%)
 Frame = -1

Query: 1874 PCFIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRT 1695
            P FIHW+  C+T+A+FS+ +NG   G+ + +RGLRQG  +SP LF++CM+ LS++     
Sbjct: 270  PTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAA 329

Query: 1694 WNPDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQ 1515
                F FH KC    +THL+FADDL++   G + S++ + +V DEF   SGL ++  KS 
Sbjct: 330  GVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKST 389

Query: 1514 IFFGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNN 1335
            ++  GV    + EI   F F  G LPV+YLGLPL  K+L +  ++PL++Q+   I  W  
Sbjct: 390  LYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTF 449

Query: 1334 SCLSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAW 1170
               S AGR  L+KSVL  +  FW+ +  LP      I+ L   FLW      +    I+W
Sbjct: 450  RFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISW 509

Query: 1169 KKVCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTL-DP 993
              VC PK EGGLGLR+L   N     K++W I + ++SLW +WV    I+ +  W+L   
Sbjct: 510  DIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQS 569

Query: 992  HPRDSPLVKNILDIRDL 942
                S + + IL IRD+
Sbjct: 570  TSMGSWIWRKILKIRDV 586



 Score =  164 bits (414), Expect(2) = e-102
 Identities = 89/249 (35%), Positives = 138/249 (55%), Gaps = 2/249 (0%)
 Frame = -2

Query: 2617 KFFYSKVNRANARNSISFLCREDGSITSDINIIIEDFTMFYNNLFGVSVPRSPLDWNAAR 2438
            K F+  V     +N I  +   DG +    +I++E    F   L  +      ++    +
Sbjct: 22   KTFHRAVIERETKNMIKEIYCTDGRVVQGDDIMVEAEKFFKEFLQLIPEDFVGVEVRELQ 81

Query: 2437 SGPMLNCT--EQSALVVPVDAKEIKDALFSIGNDKAPGPDGYPAPFFKKNWNEVGNDVLN 2264
                  CT  +   L   V ++EIK  LFS+  DK+PGPDGY + F+K  W+ +G +   
Sbjct: 82   DLLQFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTL 141

Query: 2263 AVSEFFTKGLILRELNHTSISLIPKKSHEPTVADFRPIACTNVVYKTITKILTNRMAHLL 2084
             V  FF KG + + +N   ++LIPKK     + D+RPI+C NV+YK I+KI+ NR+  LL
Sbjct: 142  PVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLL 201

Query: 2083 HKLINHAQSAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMVKIDLQKAYDSISWDFLR 1904
             + I   QSAF+K R + +N  LA EL+++Y K  +S  RC +KID+ KA+DS+ W FL 
Sbjct: 202  PRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSIS-ARCAIKIDISKAFDSVQWSFLT 260

Query: 1903 DVLFSLSTS 1877
            + L +++ S
Sbjct: 261  NTLVAMNFS 269



 Score = 62.0 bits (149), Expect = 2e-06
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
 Frame = -1

Query: 869 TADVYHFLRNHGEKTLWCRVIWKGFIPPKFSITLWFALHGRLKTVDR-LHFN-PGSLW-- 702
           T D +H ++       W + +W     PK+++  W A+H RL T DR L +N  GS+   
Sbjct: 687 TRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGN 746

Query: 701 CVLCNLHNESHEHLFFKCPATAAVWGGI 618
           CVLC  ++++ EHLFF C   + VW  +
Sbjct: 747 CVLCTNNSKTLEHLFFSCSYASTVWAAL 774


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  240 bits (613), Expect(2) = e-102
 Identities = 123/324 (37%), Positives = 179/324 (55%), Gaps = 6/324 (1%)
 Frame = -1

Query: 1868 FIHWVMTCVTSATFSLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTWN 1689
            F HW+  C+++ATFS+ +NG   GF   +RGLRQG  +SP LF++CM  LS +  V   +
Sbjct: 198  FCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVH 257

Query: 1688 PDFKFHAKCDTNKITHLAFADDLLMFGYGNSTSLQVLADVIDEFKGTSGLAVNCSKSQIF 1509
             +  +H KC    +THL FADDL++F  G   S++ + ++  EF G SGL ++  KS ++
Sbjct: 258  RNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLY 317

Query: 1508 FGGVCGYERMEIL*IFGFSEGTLPVKYLGLPLAAKKLLNIHFNPLIDQLTSFIHRWNNSC 1329
              GV    R  IL  F F+ G LPV+YLGLPL  K++    ++PL+D++ S I  W    
Sbjct: 318  LAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARS 377

Query: 1328 LSLAGRAELVKSVLQGVECFWIQSLPLPASISDRINSLLRKFLW-----GTKSCPIAWKK 1164
            LS AGR  L+ SV+  +  FW+ +  LPA     I  L   FLW       K   I W  
Sbjct: 378  LSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTS 437

Query: 1163 VCLPKDEGGLGLRDLATWNKALHTKILWNIHNKTDSLWIRWVHSEFIKNRDFWTL-DPHP 987
            +C  K EGGLG++ L   NK    K++W + ++  SLW+ WV +  I+   FW+  D   
Sbjct: 438  LCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSS 497

Query: 986  RDSPLVKNILDIRDLIISKCADDI 915
              S + K +L  RD+  S C  +I
Sbjct: 498  LGSWMWKKLLKYRDVAKSMCKVEI 521



 Score =  160 bits (406), Expect(2) = e-102
 Identities = 77/180 (42%), Positives = 117/180 (65%)
 Frame = -2

Query: 2422 NCTEQSALVVPVDAKEIKDALFSIGNDKAPGPDGYPAPFFKKNWNEVGNDVLNAVSEFFT 2243
            + T+Q  L   V ++E +  LF++ ++K PGPDGY + FFK  W+  G D + A+  FF 
Sbjct: 15   SATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFI 74

Query: 2242 KGLILRELNHTSISLIPKKSHEPTVADFRPIACTNVVYKTITKILTNRMAHLLHKLINHA 2063
            KG + + LN T ++LIPKK     + D+RPI+C NV+YK I+KI+ NR+  +L   I   
Sbjct: 75   KGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQN 134

Query: 2062 QSAFIKGRSITDNFFLAQELIRNYEKKVLSPPRCMVKIDLQKAYDSISWDFLRDVLFSLS 1883
            QSAF++ R + +N  LA EL+++Y K  +S PRC +KID+ KA+DS+ W FL + L +L+
Sbjct: 135  QSAFVRERLLIENVLLATELVKDYHKDSIS-PRCAMKIDISKAFDSVQWQFLLNTLEALN 193