BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00012395
         (3587 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus...  1485   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1408   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1407   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1391   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1385   0.0  
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]      1362   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1310   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1303   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1297   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...  1287   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1287   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1284   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1283   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1274   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1263   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1254   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1254   0.0  
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...  1248   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]             1233   0.0  
ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Caps...  1223   0.0  

>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus guttatus]
          Length = 941

 Score = 1485 bits (3845), Expect = 0.0
 Identities = 739/934 (79%), Positives = 811/934 (86%), Gaps = 1/934 (0%)
 Frame = -3

Query: 3312 FPQTXXXXXXXXXXXXXXXPVSDATDHNYTGNAENMSNLQVIPNGFPSKLPSESGGRVFI 3133
            FPQ                PVSD++D N+ GN + ++ LQ            ES  RVFI
Sbjct: 20   FPQNLKLPSLHNPALLLPPPVSDSSDDNFRGNLDKVATLQ------------ESKDRVFI 67

Query: 3132 RDPPWISALFMKNLLFRSKKSSGIKLEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXX 2953
            +DPPWIS+LFMKNLLFRS+   G+K+EFQEMERRKYY LRRRQVKAETEAW+N V     
Sbjct: 68   QDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRRRQVKAETEAWENKVEEYRE 127

Query: 2952 XXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALPADKI 2773
                   +KLAPNLPY KKL+LGWF+P REAIEKEQN +RS+KNKAAFAPFIDALPADK+
Sbjct: 128  LEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRSKKNKAAFAPFIDALPADKM 187

Query: 2772 AIIVMHKLMSLLMMGGKEAKSVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEG 2593
            A+IVMHK+M LLMMGGKE + VRVVEAAVQIGVA+E EVRI +FL+K K ++K+E+  E 
Sbjct: 188  AVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRIHSFLEKMKKNEKREIGDES 247

Query: 2592 EEDSSKEVTILRQRVKRLIKRNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAY 2413
            + DSS E  I+R+RVK LIKRNRV EV KL+RSEEF+SWGRD QAKLGCCL+ELLTQSAY
Sbjct: 248  QVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGRDIQAKLGCCLIELLTQSAY 307

Query: 2412 VQPPIDQTADSPPDVRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMII 2233
            VQPP++Q+ADSPPDVRPAFRHIFKIA R PGQ+IVK+YG IECDPLVL GLDKTV+HMII
Sbjct: 308  VQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTVKHMII 367

Query: 2232 PYVPMLVPPKRWKGYDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGN 2053
            PYVPMLVPPK+WKGYD+GGYLFLPSYLMRTHGSR QQDAV+ V  KQMQKVYEALDTLGN
Sbjct: 368  PYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEALDTLGN 427

Query: 2052 TKWRVNRRILNVVENLWAAGGDVAGLVNRENVPIPELL-SDDEKEIXXXXXXXXXXXKIN 1876
            TKWRVN+RIL VVEN+WAAGG++AGLVNRE++PIPELL S+D KE            KIN
Sbjct: 428  TKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRKVKKIN 487

Query: 1875 QERHSQRCDVELKLSVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1696
            QERHSQRCD ELKLSVAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA
Sbjct: 488  QERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 547

Query: 1695 DGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLK 1516
            +GRPLGKSGLRWLKIH+ANLYGGGVEKLSYD RV+FVENNI+EI DSADNSLNGNRWWLK
Sbjct: 548  EGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGNRWWLK 607

Query: 1515 AEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLV 1336
            AEDPFQCLAACINL EALKS SPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLV
Sbjct: 608  AEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLV 667

Query: 1335 AGDQPSDVYSEIAERVHIIMKRDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGV 1156
            AGD+PSDVYSEIAERVH IMKRDSEKDPETD +AL+AK+LIGQVDRKLVKQTVMTSVYGV
Sbjct: 668  AGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQVDRKLVKQTVMTSVYGV 727

Query: 1155 TYVGAREQIKRRLEEKGLISDDKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKI 976
            TYVGAREQIKRRLEEKGLI+DDKLLFSA+CYAA+VT+AAL ELFQAARAIM WLG+CAKI
Sbjct: 728  TYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELFQAARAIMAWLGDCAKI 787

Query: 975  IGQENHPVRWTTPLGLPVVQPYFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFV 796
            I  EN PVRWTTPLGLPVVQPYFKSQRHVI+TSLQVLALQREGD VEVRKQRTAFPPNFV
Sbjct: 788  IASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFV 847

Query: 795  HSLDGTHMMMTAIACRNAGLRFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLL 616
            HSLDG+HMMMTAIACR+AGLRFAGVHDSFWTHACDVDRMNQILRQKFV+LYSMP+LENLL
Sbjct: 848  HSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYSMPILENLL 907

Query: 615  ESFQXXXXXXXXXXXPERGDFDLEKVLESPYFFN 514
            ESF+           P RGDF LE+V+ESPYFFN
Sbjct: 908  ESFETSYPTLKFPPLPNRGDFLLEQVIESPYFFN 941


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1408 bits (3645), Expect = 0.0
 Identities = 688/934 (73%), Positives = 796/934 (85%), Gaps = 1/934 (0%)
 Frame = -3

Query: 3312 FPQTXXXXXXXXXXXXXXXPVSDATDHNYTGNAENMSNLQVIPNGFPSKLPSESGGRVFI 3133
            FP+T                V  +TD N T N E + NLQ IPNG+P  L  ES  RVFI
Sbjct: 82   FPKTLKLPVIQLPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKRVFI 141

Query: 3132 RDPPWISALFMKNLLFRSKKSSGIKLEFQEMERRKYYS-LRRRQVKAETEAWQNMVXXXX 2956
            +DPPW+S+LFM +L  R+K+  G++ EF+E+ERR+ Y+ LRRRQ+KAETEAW+ MV    
Sbjct: 142  QDPPWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYR 201

Query: 2955 XXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALPADK 2776
                    +KLAPNLPY KKL+LGWF+P R+AIEKEQN   +QK++ A+AP ID+LPADK
Sbjct: 202  ELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSLPADK 261

Query: 2775 IAIIVMHKLMSLLMMGGKEAKSVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAE 2596
            +A+IVMHKLM LLMMGGKE + V+VV+AAVQIG+A+E EVRI NF++K K  QK    A+
Sbjct: 262  MAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMSGAQ 321

Query: 2595 GEEDSSKEVTILRQRVKRLIKRNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSA 2416
            G+ED S+E  ILR+RVK LIKRNRV EV+KL++SEE ESWGRDTQAKLGC LLELLT++A
Sbjct: 322  GQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETA 381

Query: 2415 YVQPPIDQTADSPPDVRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMI 2236
            YVQPP+DQ+AD+PPD+RPAFRH+F+IA R+PG++IVKKYG IECDPLV+ G+D+TV+ M+
Sbjct: 382  YVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMM 441

Query: 2235 IPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLG 2056
            IPYVPMLVPPK+W+GYDKGGYLFLPSYLMRTHGSRRQQDAVR+VP KQMQ+VYEALDTLG
Sbjct: 442  IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLG 501

Query: 2055 NTKWRVNRRILNVVENLWAAGGDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXKIN 1876
            +TKWRVN+RIL+VVE++WA GG++AGLV+R++VPIPEL SDD  E+           KIN
Sbjct: 502  STKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKIN 561

Query: 1875 QERHSQRCDVELKLSVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1696
            QE HSQRCD ELKLSVAR +KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA
Sbjct: 562  QELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 621

Query: 1695 DGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLK 1516
            +GRPLGKSGLRWLK+HLA+LY GG+EKL YDAR++FVEN+I +ILDSA N LNGNRWWL 
Sbjct: 622  EGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLN 681

Query: 1515 AEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLV 1336
            AEDP QCLAACINLSEALKS SPHTVISHLPIHQDGSCNGLQHYAALGRDS EAAAVNLV
Sbjct: 682  AEDPLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLV 741

Query: 1335 AGDQPSDVYSEIAERVHIIMKRDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGV 1156
            AG++P+DVY+EIA RV  I++ DS KDP TDPNALLAKLLI QVDRKLVKQTVMTSVYGV
Sbjct: 742  AGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGV 801

Query: 1155 TYVGAREQIKRRLEEKGLISDDKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKI 976
            TYVGAREQIKRRLEEKGLI DD+LLF+ASCYAA+VT+AAL ELFQAAR  M WLG+CAK+
Sbjct: 802  TYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKV 861

Query: 975  IGQENHPVRWTTPLGLPVVQPYFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFV 796
            I  EN PVRWTTPLGLPVVQPYFK+QRHVI+TSLQVLALQREGD VEVRKQRTAFPPNFV
Sbjct: 862  IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFV 921

Query: 795  HSLDGTHMMMTAIACRNAGLRFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLL 616
            HSLDG+HMMMTA+ACR+AGL FAGVHDSFWTHACDVD+MN+ILR+KFVELYSMP+LE+LL
Sbjct: 922  HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLL 981

Query: 615  ESFQXXXXXXXXXXXPERGDFDLEKVLESPYFFN 514
            ESFQ           P+RGDFDL++VLESPYFFN
Sbjct: 982  ESFQESYPALTFPPLPKRGDFDLQEVLESPYFFN 1015


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score = 1407 bits (3642), Expect = 0.0
 Identities = 687/934 (73%), Positives = 794/934 (85%), Gaps = 1/934 (0%)
 Frame = -3

Query: 3312 FPQTXXXXXXXXXXXXXXXPVSDATDHNYTGNAENMSNLQVIPNGFPSKLPSESGGRVFI 3133
            FP+T                V  +TD N T N E + NLQ IPNG+P  L  ES  RVFI
Sbjct: 74   FPKTLKLPIIQLPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKRVFI 133

Query: 3132 RDPPWISALFMKNLLFRSKKSSGIKLEFQEMERRKYYS-LRRRQVKAETEAWQNMVXXXX 2956
            +DPPW+S+LFM NL  R+K+  G++ EF+E+ERR+ Y+ LRRRQ+KAETEAW+ MV    
Sbjct: 134  QDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYR 193

Query: 2955 XXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALPADK 2776
                    +KLAPNLPY KKLMLGWF+P R+AIE+EQN   +QK++ A+AP ID+LPADK
Sbjct: 194  ELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKHRTAYAPHIDSLPADK 253

Query: 2775 IAIIVMHKLMSLLMMGGKEAKSVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAE 2596
            +A+IVMHKLM LLMMGGKE + V+VV+AAVQIG+A+E EVRI NF++K K  QK    A+
Sbjct: 254  MAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMTGAQ 313

Query: 2595 GEEDSSKEVTILRQRVKRLIKRNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSA 2416
            G+ED S+E  ILR+RVK LIKRNRV EV+KL++SEE ESWGRDTQAKLGC LLELLT++A
Sbjct: 314  GQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETA 373

Query: 2415 YVQPPIDQTADSPPDVRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMI 2236
            YVQPP+DQ+AD+PPD+RPAFRH+F+IA R+PG++IVKKYG IECDPLV+ G+D+TV+ M+
Sbjct: 374  YVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMM 433

Query: 2235 IPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLG 2056
            IPYVPMLVPPK+W+GYDKGGYLFLPSYLMRTHGSRRQQDAVR+VP KQMQ+VYEALDTLG
Sbjct: 434  IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLG 493

Query: 2055 NTKWRVNRRILNVVENLWAAGGDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXKIN 1876
            +TKWRVN+RIL+VVE +WA GG++AGLV+R++VPIPEL SDD  E+           KIN
Sbjct: 494  STKWRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKIN 553

Query: 1875 QERHSQRCDVELKLSVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 1696
            QE HSQRCD ELKLSVAR ++DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA
Sbjct: 554  QELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFA 613

Query: 1695 DGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLK 1516
            +GRPLGKSGLRWLK+HLA+LY GG+EKL YDAR++FVEN+I +ILDSA N LNGNRWWL 
Sbjct: 614  EGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLN 673

Query: 1515 AEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLV 1336
            AEDP QCLAACINLSEA+KS SPHTVISHLPIHQDGSCNGLQHYAALGRDS EAAAVNLV
Sbjct: 674  AEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLV 733

Query: 1335 AGDQPSDVYSEIAERVHIIMKRDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGV 1156
            AG++P+DVY+EIA RV  I++ DS KDP TDPNALLAKLLI QVDRKLVKQTVMTSVYGV
Sbjct: 734  AGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGV 793

Query: 1155 TYVGAREQIKRRLEEKGLISDDKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKI 976
            TYVGAREQIKRRLEEKGLI DD+LLF+ASCYAA+VT+AAL ELFQAAR  M WLG+CAK+
Sbjct: 794  TYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKV 853

Query: 975  IGQENHPVRWTTPLGLPVVQPYFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFV 796
            I  EN PVRWTTPLGLPVVQPYFK+QRHVI+TSLQVLALQREGD VEVRKQRTAFPPNFV
Sbjct: 854  IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFV 913

Query: 795  HSLDGTHMMMTAIACRNAGLRFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLL 616
            HSLDG+HMMMTA+ACR+AGL FAGVHDSFWTHACDVD+MN+ILR+KFVELYSMP+LE+LL
Sbjct: 914  HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLL 973

Query: 615  ESFQXXXXXXXXXXXPERGDFDLEKVLESPYFFN 514
            ESFQ           P+RGDFDL +VLESPYFFN
Sbjct: 974  ESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 1007


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1391 bits (3601), Expect = 0.0
 Identities = 683/903 (75%), Positives = 785/903 (86%), Gaps = 1/903 (0%)
 Frame = -3

Query: 3219 NAENMSNLQVIPNGFPSKLPSESGGRVFIRDPPWISALFMKNLLFRSKKSSGIKLEFQEM 3040
            N E + NLQ I NG  +K   ES  RVFI+DPPW+S+LFM +L  R+K+  G++ EF+E+
Sbjct: 78   NLEELVNLQKIANGVLTK---ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREI 134

Query: 3039 ERRKYYS-LRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFRE 2863
            ERR+ Y+ LRRRQ+KAETEAW+ MV            +KLAPNLPY KKL+LGWF+P R+
Sbjct: 135  ERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQ 194

Query: 2862 AIEKEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAKSVRVVEAAVQ 2683
            AIEKEQN   + K++AAFAP ID+LPADK+A+IVMHKLM LLMMGGKE + V+VV+AAVQ
Sbjct: 195  AIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQ 254

Query: 2682 IGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIKRNRVAEVQKL 2503
            IG+A+E EVRI NFL+K K  QK    A+ +ED S+E  ILR+RVK LIKRNRV EV+KL
Sbjct: 255  IGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKL 314

Query: 2502 LRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFRHIFKIAAREP 2323
            ++SEE ESWGRDTQAKLGC LLELLT++AYVQPP+DQ+AD+PPD+RPAFRH+F+IA R+P
Sbjct: 315  MKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDP 374

Query: 2322 GQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRT 2143
            G+SIVKKYG IECDPLV+ G+D+TV+ M+IPYVPMLVPPK+W+GYDKGGYLFLPSYLMRT
Sbjct: 375  GKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRT 434

Query: 2142 HGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAGGDVAGLVNRE 1963
            HGSRRQQDAVR+VP KQMQ+VYEALDTLG+TKWRVN+RIL+VVE++WA GG++AGLV+R+
Sbjct: 435  HGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRK 494

Query: 1962 NVPIPELLSDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNMKDEEGFYYPHN 1783
            +VPIPEL SDD  E+           KINQE HSQRCD ELKLSVAR +KDEEGFYYPHN
Sbjct: 495  DVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHN 554

Query: 1782 LDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYD 1603
            LDFRGRAYPMHPHLNHLSSDLCRGILEFA+GRPLGKSGLRWLKIHLA+LY GG+EKL YD
Sbjct: 555  LDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYD 614

Query: 1602 ARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLP 1423
            AR++FVEN+I +ILDSA+N LNGNRWWL AEDPFQCLAACINLSEALKSSSPHTV SHLP
Sbjct: 615  ARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLP 674

Query: 1422 IHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIMKRDSEKDPETD 1243
            IHQDGSCNGLQHYAALGRDS EAAAVNLVAGD+P+DVY+EIA RV  I++ DS KDP TD
Sbjct: 675  IHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATD 734

Query: 1242 PNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLISDDKLLFSASCY 1063
            PNALLAKLLI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DD+LLF+ASCY
Sbjct: 735  PNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCY 794

Query: 1062 AARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQPYFKSQRHVIK 883
            AA+VT+AAL ELFQAAR  M WLG+CAK+I  EN PVRWTTPLGLPVVQPYFK+QRHVI+
Sbjct: 795  AAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIR 854

Query: 882  TSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGLRFAGVHDSFWT 703
            TSLQVLALQREGD VEVRKQRTAFPPNFVHSLDG+HMMMTA+ACR+AGL+FAGVHDSFWT
Sbjct: 855  TSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWT 914

Query: 702  HACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGDFDLEKVLESPY 523
            HACDVD+MN+ILR+KFVELYSMP+LE+LLESFQ           P+RGDFDL +VLESPY
Sbjct: 915  HACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPY 974

Query: 522  FFN 514
            FFN
Sbjct: 975  FFN 977


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1385 bits (3586), Expect = 0.0
 Identities = 682/904 (75%), Positives = 785/904 (86%), Gaps = 2/904 (0%)
 Frame = -3

Query: 3219 NAENMSNLQVIPNGFPSKLPSESGGRVFIRDPPWISALFMKNLLFRSKKSSGIKLEFQEM 3040
            N E + NLQ IPNGF +K   ES  RVFI+DPPW+S+LFM +L  R+K+  G++ EF+E+
Sbjct: 77   NLEELVNLQKIPNGFLNK---ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREI 133

Query: 3039 ERRKYYS-LRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFRE 2863
            ERR+ Y+ LRRRQ+KAETEAW+ MV            +KLAPNLPY KKL+LGWF+P R+
Sbjct: 134  ERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQ 193

Query: 2862 AIEKEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAKSVRVVEAAVQ 2683
            AIEKEQN   + K++AAFAP ID+LPADK+A+IVMHKLM LLMMGGKE + V+VV+AAVQ
Sbjct: 194  AIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQ 253

Query: 2682 IGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIKRNRVAEVQKL 2503
            IG+A+E EVRI NFL+K K  QK    A+ +ED SKE  ILR+RVK LIKRNRV EV+KL
Sbjct: 254  IGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKL 313

Query: 2502 LRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFRHIFKIAAREP 2323
            ++SEE ESWGRDTQAKLGC LLELLT++AYVQ P+DQ+AD+PPD+RPAFRH+FKIA R+P
Sbjct: 314  MKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDP 373

Query: 2322 GQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRT 2143
            G++IVKKYG IECDPLV+ G+D+TV+ M+IPYVPMLVPPK+W+GYDKGGYLFLPSYLMRT
Sbjct: 374  GKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRT 433

Query: 2142 HGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAGGDVAGLVNRE 1963
            HGSRRQQDAVR VP KQMQ+VYEALDTLG+TKWRVN+RILNVVE++WA GG++AGLV+R+
Sbjct: 434  HGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRK 493

Query: 1962 NVPIPELL-SDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNMKDEEGFYYPH 1786
            +VPIPEL  SDD  E+           KINQE HSQRCD ELKLSVAR +KDEEGFYYPH
Sbjct: 494  DVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPH 553

Query: 1785 NLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSY 1606
            NLDFRGRAYPMHPHLNHLSSDLCRGILEFA+GRPLGKSGLRWLKIHLA+LY GGVEKL Y
Sbjct: 554  NLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCY 613

Query: 1605 DARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHL 1426
            DAR++FVEN+I +ILDSA+N LNGNRWWL AEDPFQCLAACINLSEALKSSSPHTVISHL
Sbjct: 614  DARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHL 673

Query: 1425 PIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIMKRDSEKDPET 1246
            PIHQDGSCNGLQHYAALGRDS EAAAVNLVAG++P+DVY+EIA RV  I++ DS KDP  
Sbjct: 674  PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAI 733

Query: 1245 DPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLISDDKLLFSASC 1066
            DPNALLAKLLI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DD+LLF+ASC
Sbjct: 734  DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASC 793

Query: 1065 YAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQPYFKSQRHVI 886
            YAA+VT+AAL ELFQAAR  M WLG+CAK+I  EN PVRWTTPLGLPVVQPYFK+QRHVI
Sbjct: 794  YAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVI 853

Query: 885  KTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGLRFAGVHDSFW 706
            +TSLQ+LALQREGD VEVRKQRTAFPPNFVHSLDG+HMMMTA+ACR+AGL+FAGVHDSFW
Sbjct: 854  RTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFW 913

Query: 705  THACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGDFDLEKVLESP 526
            THACDVD+MN+ILR+KFVELYS+P+LE+LLE+FQ           P+RGDF+L +VLESP
Sbjct: 914  THACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESP 973

Query: 525  YFFN 514
            YFFN
Sbjct: 974  YFFN 977


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score = 1362 bits (3526), Expect = 0.0
 Identities = 661/915 (72%), Positives = 778/915 (85%), Gaps = 2/915 (0%)
 Frame = -3

Query: 3252 VSDATDHNYTGNAENMSNLQVIPNG-FPSKLPSESGGRV-FIRDPPWISALFMKNLLFRS 3079
            VSD++D N+T N  N++ + V PNG   S+   E   RV  I+DPPWIS+L++K+LLFR+
Sbjct: 39   VSDSSDDNFTENPGNLATMLVTPNGGISSEFSKELRDRVVIIQDPPWISSLYIKSLLFRN 98

Query: 3078 KKSSGIKLEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFK 2899
            +    +K+EF+EMER KYY LRRRQ+KAETEAW+NMV            +K+APNLPYFK
Sbjct: 99   RNRCDVKIEFKEMERHKYYELRRRQIKAETEAWENMVKEYKELEKEMCEKKMAPNLPYFK 158

Query: 2898 KLMLGWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKE 2719
            KLMLGWF+P  EAI  EQ++++ +KN+ AFAP+ID+LP + +A+IVMHK+M LLMMGGK+
Sbjct: 159  KLMLGWFEPLTEAIRTEQSLQKPKKNRIAFAPYIDSLPPESMAVIVMHKIMGLLMMGGKQ 218

Query: 2718 AKSVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRL 2539
             + +RVVEAA+QIG AIEQEVRI  FL+K K+ QK+ V +E +E+S ++   LR+RVK L
Sbjct: 219  DRCIRVVEAALQIGKAIEQEVRIHAFLEKTKH-QKEAVASESQENSCEKAANLRKRVKNL 277

Query: 2538 IKRNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPA 2359
            ++R R  EVQKL++SE  E W R+ QAKLGCCL+ LLTQSAYVQPP+ Q+ADSPPDVRPA
Sbjct: 278  VRRGRGVEVQKLVKSENHEPWTREIQAKLGCCLINLLTQSAYVQPPVSQSADSPPDVRPA 337

Query: 2358 FRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKG 2179
            FRH FKIA REP Q++V++YG IECDPL+L G +  V+HM++P++PML+PPK+WKGYDKG
Sbjct: 338  FRHFFKIATREPRQTVVRRYGVIECDPLILDGFESNVKHMMVPHIPMLIPPKKWKGYDKG 397

Query: 2178 GYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWA 1999
            GYLFLPSY+MRTHGSRRQQDAV+ V  ++MQKV+EALDTLGNTKWRVN+ IL+VVE++WA
Sbjct: 398  GYLFLPSYVMRTHGSRRQQDAVKTVSPRKMQKVFEALDTLGNTKWRVNKSILSVVEDIWA 457

Query: 1998 AGGDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARN 1819
            AGG++AGLVNRE+VP+PEL SDD  EI           K N E HS RCD ELKLSVAR 
Sbjct: 458  AGGNIAGLVNREDVPLPELHSDDPIEIKKWKFSIRKAKKNNMEMHSLRCDTELKLSVARA 517

Query: 1818 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLAN 1639
            MKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGILEF++GRPLGKSGL WLK+HLAN
Sbjct: 518  MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGILEFSEGRPLGKSGLYWLKLHLAN 577

Query: 1638 LYGGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALK 1459
            L+GGGV+KL YD R+SFVENNI E+ DSADN L+GNRWWLKAEDPFQ LAACIN+SEAL+
Sbjct: 578  LFGGGVQKLPYDERLSFVENNITEVFDSADNPLSGNRWWLKAEDPFQFLAACINISEALR 637

Query: 1458 SSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHII 1279
            SSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAG +P+DVYSEIAERV  I
Sbjct: 638  SSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGHKPTDVYSEIAERVLDI 697

Query: 1278 MKRDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI 1099
            MK DSEKDP  DPNA+LAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQI++RL EKG I
Sbjct: 698  MKSDSEKDPADDPNAVLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIRKRLAEKGFI 757

Query: 1098 SDDKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVV 919
            +DDK+LF A+CYAA+VTMAAL +LFQAARAIM WLG+CAKII  EN PVRWTTPLGLPVV
Sbjct: 758  NDDKVLFMAACYAAKVTMAALGQLFQAARAIMSWLGDCAKIIASENQPVRWTTPLGLPVV 817

Query: 918  QPYFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAG 739
            QPYFK++RHVI+TSLQVLALQREGD VEVRKQ+TAFPPNFVHSLDG+HMMMTA+ACR+AG
Sbjct: 818  QPYFKTKRHVIRTSLQVLALQREGDSVEVRKQKTAFPPNFVHSLDGSHMMMTAVACRDAG 877

Query: 738  LRFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERG 559
            LRFAGVHDSFWTHACDVD+MNQILR+KFV+LYSMP+LE+LLESFQ           P+RG
Sbjct: 878  LRFAGVHDSFWTHACDVDKMNQILREKFVDLYSMPILEDLLESFQSSYPTLRFPPLPKRG 937

Query: 558  DFDLEKVLESPYFFN 514
            DFDL  VL+SPYFFN
Sbjct: 938  DFDLRNVLDSPYFFN 952


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1310 bits (3390), Expect = 0.0
 Identities = 645/901 (71%), Positives = 751/901 (83%), Gaps = 1/901 (0%)
 Frame = -3

Query: 3213 ENMSNLQVIPNGFPSKLPSESGGRVFIRDPPWISALFMKNLLFRSKKSSGIKLEFQEMER 3034
            EN  N Q+  + F    P ES  R+FI+DPPWI++LF+K +  R+ +   +KLE +E+ER
Sbjct: 79   ENSMNFQIPMSEFHLITPQESAPRIFIQDPPWIASLFLKGIYKRANQE--LKLESKEIER 136

Query: 3033 RKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIE 2854
            R Y  LRRRQ+KAETEAW+ MV            +KLAPNLPY K L LGWF+P REAI 
Sbjct: 137  RNYNVLRRRQIKAETEAWERMVDEYKDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIA 196

Query: 2853 KEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAKSVRVVEAAVQIGV 2674
            +EQ  ++++K+KAAFAP ID LPADK+A+IVMHK+M L+M+G ++   V+VV+AAV IG+
Sbjct: 197  REQKTQQTKKHKAAFAPHIDLLPADKMALIVMHKMMGLVMVGNQDG-CVQVVQAAVHIGM 255

Query: 2673 AIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIKRNRVAEVQKLLRS 2494
            AIEQEVRI +FL+K KN QKK+     E+  SKE  ILR+RV  LI+R R+ EVQKLL  
Sbjct: 256  AIEQEVRIHSFLEKTKNLQKKKTGVADEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIK 315

Query: 2493 EEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFRHIFKIAAREPGQS 2314
            EE + WGRD QAKLG  L+ELLT++AYVQPP+ Q ADSPPDVRPAFRH FK  A+ PGQ 
Sbjct: 316  EEMKPWGRDKQAKLGSRLIELLTETAYVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQK 375

Query: 2313 IVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTHGS 2134
            IVK YG IECDPLVL GLDKT +HM+IPYVPMLVPPKRWKGYDKGG+LFLPSY+MRTHGS
Sbjct: 376  IVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGS 435

Query: 2133 RRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAGGDVAGLVNRENVP 1954
            R+Q DA+R +   QMQKV+EALD LG+TKWRVN+++L+VVE++WA GG++AGLVNRE+VP
Sbjct: 436  RKQVDAMRNISRNQMQKVFEALDMLGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVP 495

Query: 1953 IPELL-SDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNMKDEEGFYYPHNLD 1777
            +P+   S+D KEI           KINQERHSQRCD ELKLSVAR MKDEEGFYYPHNLD
Sbjct: 496  VPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLD 555

Query: 1776 FRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDAR 1597
            FRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGKSGLRWLKIHLANLY GGVEKLSY+ R
Sbjct: 556  FRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGR 615

Query: 1596 VSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIH 1417
            ++FV+N+I +I DSA N +NGNRWWL AEDP QCLAACINLSEAL S SPHTVISHLPIH
Sbjct: 616  LAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIH 675

Query: 1416 QDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIMKRDSEKDPETDPN 1237
            QDGSCNGLQHYAALGRDS EAAAVNLV GD+P+DVYSEIA RVH IMKRDS KDP T PN
Sbjct: 676  QDGSCNGLQHYAALGRDSLEAAAVNLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPN 735

Query: 1236 ALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLISDDKLLFSASCYAA 1057
            ALLA++L+ Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI+DD+LLF+A+CYAA
Sbjct: 736  ALLARILVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAA 795

Query: 1056 RVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQPYFKSQRHVIKTS 877
            +VT+AAL E+FQAAR IM WLG+CAK+I  EN PVRWTTPLGLPVVQPY KS+RH+I+TS
Sbjct: 796  KVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTS 855

Query: 876  LQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGLRFAGVHDSFWTHA 697
            LQVLALQRE + V++RKQRTAFPPNFVHSLDG+HMMMTA+ACR+AGLRFAGVHDSFWTH 
Sbjct: 856  LQVLALQRESNSVDIRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHP 915

Query: 696  CDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGDFDLEKVLESPYFF 517
            CDVD+MN+ILR+KFVELYSMP+LE+LLESFQ           PERGDFDL +VLESPYFF
Sbjct: 916  CDVDQMNEILREKFVELYSMPILESLLESFQASYPALTFPPLPERGDFDLLQVLESPYFF 975

Query: 516  N 514
            N
Sbjct: 976  N 976


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1303 bits (3373), Expect = 0.0
 Identities = 641/914 (70%), Positives = 756/914 (82%), Gaps = 1/914 (0%)
 Frame = -3

Query: 3252 VSDATDHNYTGNAENMSNLQVIPNGFPSKLPSESGGRVFIRDPPWISALFMKNLLFRSKK 3073
            ++D+   N   N EN    QV     P   P     R+FI+DPPWI++LF+K +  +  K
Sbjct: 73   LNDSVQDNLVENLENSIKFQV-----PISEP-----RIFIQDPPWIASLFLKGMFKKVNK 122

Query: 3072 SSGIKLEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKL 2893
               +K+E +E++RRKY  LRRRQ+KAETEAW+ MV            +KLAP+LPY K L
Sbjct: 123  E--LKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDLERVMREKKLAPSLPYVKAL 180

Query: 2892 MLGWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAK 2713
             LGWF+P REAI KEQ  ++++K+K AFAP ID LPADK+A+IVMHKLM L+MMG ++  
Sbjct: 181  FLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMALIVMHKLMGLVMMGNQDG- 239

Query: 2712 SVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIK 2533
             V+VV+AAV IG+AIEQEVRI +FL+K K+ Q+K+     E+  SKE  ILR+RV  LI+
Sbjct: 240  CVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKKTSVADEDGLSKEKEILRKRVNGLIR 299

Query: 2532 RNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFR 2353
            R R+ EVQKLL+ E+ + WGRDTQAKLG  L+ELLT++A+VQPP+DQ AD PPDVRPAFR
Sbjct: 300  RKRLVEVQKLLKKEDMKPWGRDTQAKLGSRLIELLTETAHVQPPLDQLADGPPDVRPAFR 359

Query: 2352 HIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGY 2173
            H  K AA+ PGQ +VK YG IECDPLVL GLDKT +HM+IPYVPMLVPPKRWKGYDKGG+
Sbjct: 360  HRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGH 419

Query: 2172 LFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAG 1993
            LFLPSY+MRTHGSR+Q D +R +  +QMQKV+EALD LG+TKWR+N+++LNVVE++WA G
Sbjct: 420  LFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGSTKWRINKKVLNVVESIWARG 479

Query: 1992 GDVAGLVNRENVPIPELL-SDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNM 1816
            G++AGLV+RE+VP+PE   S+D  EI           K+NQERHSQRCD ELKLSVAR M
Sbjct: 480  GNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELKLSVARRM 539

Query: 1815 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANL 1636
            KDE+GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGKSGLRWLKIHLANL
Sbjct: 540  KDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANL 599

Query: 1635 YGGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKS 1456
            Y GGVEKLSYD R+SFV+N+I +I DSA N +NGNRWWL AEDP QCLAACINLSEAL S
Sbjct: 600  YSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNS 659

Query: 1455 SSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIM 1276
             SPHTVISHLPIHQDGSCNGLQHYAALGRD+ EAAAVNLVAG++P+DVYSEIA RVH IM
Sbjct: 660  PSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAVRVHDIM 719

Query: 1275 KRDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIS 1096
            KRDS KDP T+PNALLAK+L+ Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI+
Sbjct: 720  KRDSNKDPTTNPNALLAKVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIT 779

Query: 1095 DDKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQ 916
            DD+LLF+A+CYAA+VT+AAL E+FQAAR IM WLG+CAK+I  EN PVRWTTPLGLPVVQ
Sbjct: 780  DDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQ 839

Query: 915  PYFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGL 736
            PY KS+RH+I+TSLQVLALQRE +LV+VRKQRTAFPPNFVHSLDG+HMMMTA+ACR+AG+
Sbjct: 840  PYCKSERHLIRTSLQVLALQRESNLVDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGI 899

Query: 735  RFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGD 556
            RFAGVHDSFWTHACDVD+MNQILR+ FVELYS P+LENLLESFQ           PERGD
Sbjct: 900  RFAGVHDSFWTHACDVDQMNQILRENFVELYSKPILENLLESFQAAYPELTFPPLPERGD 959

Query: 555  FDLEKVLESPYFFN 514
            FDL++VL+SPYFFN
Sbjct: 960  FDLQEVLKSPYFFN 973


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1297 bits (3356), Expect = 0.0
 Identities = 636/909 (69%), Positives = 755/909 (83%), Gaps = 2/909 (0%)
 Frame = -3

Query: 3234 HNYTGNAENMSNLQVIPNGFPSKLPSESGGRVFIRDPPWISALFMKNLLFRSKKSS-GIK 3058
            +N     ++ SN+QV           ES  R+F++DPPWIS+    +   R++++   +K
Sbjct: 83   NNSIETLQDSSNIQV----------KESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVK 132

Query: 3057 LEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKLMLGWF 2878
            LEF+E ERR Y  LRRRQVKAETEAW+ MV            +KLAPNLPY K L LGWF
Sbjct: 133  LEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWF 192

Query: 2877 QPFREAIEKEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAKSVRVV 2698
            +P REAI+KEQ  +R++K KAA+AP I+ LPADK+A+IVMHK+M L+MMG +E   VRVV
Sbjct: 193  EPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEG-CVRVV 251

Query: 2697 EAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIKRNRVA 2518
            +AAVQIG+AIEQEVRI +FL+K KN ++ + V   +E   +E  ILR+RVK  I++ ++ 
Sbjct: 252  QAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQE-GLREKEILRKRVKSFIRKKKII 310

Query: 2517 EVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFRHIFKI 2338
            EVQKL+++EE   WGRDTQAKLG  L+ELLT++AYVQ P++Q+AD PPDVRPAFRH FK 
Sbjct: 311  EVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKT 370

Query: 2337 AAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGYLFLPS 2158
              +E GQ   +KYG IECDPLVL GLD+T +HM+IPYVPML+PPK+WKGYDKGGYLFLPS
Sbjct: 371  VTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPS 430

Query: 2157 YLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAGGDVAG 1978
            Y+MRTHGSR+QQDAV++VP +Q+QKV+EALDTLGNTKWR+NRR+L+VVE++WA GG++ G
Sbjct: 431  YVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGG 490

Query: 1977 LVNRENVPIPELLS-DDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNMKDEEG 1801
            LV+RENVP+PE  S +D  EI           KINQERHS RCD E+KLSVAR MKDEEG
Sbjct: 491  LVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEG 550

Query: 1800 FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGV 1621
            FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGKSGLRWLKI LANLY GGV
Sbjct: 551  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGV 610

Query: 1620 EKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHT 1441
            EKLSYD R++FV+N++ ++ DSADN LNGNRWWL AEDPFQCLAACINLSEAL+SSSPHT
Sbjct: 611  EKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHT 670

Query: 1440 VISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIMKRDSE 1261
            VISHLPIHQDGSCNGLQHYAALGR+S EA+AVNLVAG++P+DVYSEIA RVH IMKRDS 
Sbjct: 671  VISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSN 730

Query: 1260 KDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLISDDKLL 1081
            KDP TDP ALLAK+LIGQVDRKLVKQTVMTSVYGVTY+GAREQIKRRL EKGLI+D++LL
Sbjct: 731  KDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLL 790

Query: 1080 FSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQPYFKS 901
            F+A+CYAA+VT+AAL E+FQAAR IM WLG CAK+I  EN PV+WTTPLGLPV+QPY KS
Sbjct: 791  FTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKS 850

Query: 900  QRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGLRFAGV 721
            +RH+I+TSLQVLALQREG +V +RKQRTAFPPNFVHSLDG+HMMMTA+ACR+AGL FAGV
Sbjct: 851  ERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGV 910

Query: 720  HDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGDFDLEK 541
            HDSFWTHACDVD+MNQILR+KFVELYSMP+LENLLESFQ           P+RG+FDL +
Sbjct: 911  HDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLRE 970

Query: 540  VLESPYFFN 514
            VLESPYFFN
Sbjct: 971  VLESPYFFN 979


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1287 bits (3330), Expect = 0.0
 Identities = 635/914 (69%), Positives = 763/914 (83%), Gaps = 3/914 (0%)
 Frame = -3

Query: 3246 DATDHNYTGNAENMSNLQVIPNGFPSKLPSESGGRVFIRDPPWISALFMKNLLFRSKKSS 3067
            D+   N+  N EN SN  +        L  ES  R+FI+DPPWISALF+K L   + ++ 
Sbjct: 69   DSLHDNFVENIENPSNFLLPKAQSHQILSPESTPRLFIQDPPWISALFLKGLYKMTNQT- 127

Query: 3066 GIKLEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKLML 2887
             +K+E +E+E+RKY  LRRRQVK ETEAW+ MV            +KLAPNLPY K L L
Sbjct: 128  -VKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFL 186

Query: 2886 GWFQPFREAIEKEQNVRR--SQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAK 2713
            GWF+P REAI +EQ V++  S+K +AA+AP I+ LPADK+A+IVMHK+M L+M G +E  
Sbjct: 187  GWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVM-GAQENG 245

Query: 2712 SVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIK 2533
             V+VV+AAV IGVAIEQEVRI NFL+K KN Q+K+   E  +  SKE  IL++RV  LI+
Sbjct: 246  FVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDE-VQGLSKEKEILKKRVNSLIR 304

Query: 2532 RNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFR 2353
            R R+ EVQKL+++EE + WGRD QAKLG  LLELLT++AYVQPPIDQ+ DSPPDV+PAFR
Sbjct: 305  RRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFR 364

Query: 2352 HIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGY 2173
            H FK  +++PG+ ++K+YG IECDPL+L GLD++ +HM+IPYVPMLVPPK+WKGYDKGGY
Sbjct: 365  HKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGY 424

Query: 2172 LFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAG 1993
            LFLPSY+MRTHGSR+QQDA++ V VK+MQKV+EALDTLG+TKWRVN+++L VVE++WA+G
Sbjct: 425  LFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASG 484

Query: 1992 GDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNM 1816
            G++AGLV+R ++PIPE   S+D  E            KIN+ERHSQRCD ELKLSVAR M
Sbjct: 485  GNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKM 544

Query: 1815 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANL 1636
            ++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLG+SGL WLKIHLANL
Sbjct: 545  ENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANL 604

Query: 1635 YGGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKS 1456
            + GGVEKLS+D R++FV+N++ +I DSA+N +NGNRWWL AEDPFQCLAACINLSE+LKS
Sbjct: 605  FAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKS 664

Query: 1455 SSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIM 1276
            SSPH+V+S+LPIHQDGSCNGLQHYAALGRDS EAAAVNLVAG++P+DVYSEIA RVH IM
Sbjct: 665  SSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIM 724

Query: 1275 KRDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIS 1096
            KRDS+KDP T+PNA LAKLLI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I+
Sbjct: 725  KRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 784

Query: 1095 DDKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQ 916
            DD++LF+A+CY A+VT+AAL ELFQAAR IMGWLG+CAK+I  EN PV+WTTPLGLPVVQ
Sbjct: 785  DDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQ 844

Query: 915  PYFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGL 736
            PY+KS+RH+I+TSLQVLALQREGD VEVRKQRTAFPPNFVHSLDG+HMMMTA+ACR+AGL
Sbjct: 845  PYYKSERHLIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 904

Query: 735  RFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGD 556
             FAGVHDSFWTHACDV++MNQILR+KFVELYSMPVLENL ES Q           PERG+
Sbjct: 905  HFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGN 964

Query: 555  FDLEKVLESPYFFN 514
            FDL +VL+SPYFFN
Sbjct: 965  FDLREVLKSPYFFN 978


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1287 bits (3330), Expect = 0.0
 Identities = 631/913 (69%), Positives = 759/913 (83%)
 Frame = -3

Query: 3252 VSDATDHNYTGNAENMSNLQVIPNGFPSKLPSESGGRVFIRDPPWISALFMKNLLFRSKK 3073
            ++D+   N+T   +N  NLQ+  +        ES  R+FI+DPPWI++LF+K L    +K
Sbjct: 67   LADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGLYKCVQK 126

Query: 3072 SSGIKLEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKL 2893
               +KLEF E+E+RKY  LRRRQ+KAETEAW+ MV            +KLAPNLPY KKL
Sbjct: 127  E--VKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKL 184

Query: 2892 MLGWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAK 2713
             LGWF+P + AIE+EQ  +RS+K KAAFAP I+ L ADK+A+IVM+K+M LLMM  ++  
Sbjct: 185  FLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAAQDG- 243

Query: 2712 SVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIK 2533
             V+VV+AAVQIG AIEQEVRIQ+ L+K +++Q+ +V A+  E  +KE  +LR++V  LI+
Sbjct: 244  CVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRAD-TECLTKEKEVLRKQVNGLIR 302

Query: 2532 RNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFR 2353
            R ++ EVQKLL+ EEF++WGRDTQAKLG  L+ELL +SA++QPP+ Q+ADSPPD+RPAF 
Sbjct: 303  RRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFW 362

Query: 2352 HIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGY 2173
            H FK  A+ PGQ+ VKKYG +ECDP+VL GLD+T +HM+IPY+PMLVPPK+WKGYDKGG+
Sbjct: 363  HGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGH 422

Query: 2172 LFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAG 1993
             FLPSY+MRTHGS RQQDA++ +  KQMQKV+EALD LG+TKWRVNR +L+VVE+LWA G
Sbjct: 423  FFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQG 482

Query: 1992 GDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNMK 1813
            G+ AGLV+R++VPIPE    D  E+           KINQE HSQRCDVELKLSVAR MK
Sbjct: 483  GNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMK 542

Query: 1812 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLY 1633
            DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGKSGL WLKIHLANLY
Sbjct: 543  DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLY 602

Query: 1632 GGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSS 1453
             GGVEKLSYD R++FV++++  I DSA N +NG+RWWL AEDPFQCLAAC+NLSEALKSS
Sbjct: 603  AGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSS 662

Query: 1452 SPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIMK 1273
            +PHTVIS+LPIHQDGSCNGLQHYAALGRD+ EAAAVNLVAG++P+DVYSEIA RVH IM 
Sbjct: 663  APHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMI 722

Query: 1272 RDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLISD 1093
            RD+ KDP T+PNA LAKLLI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKGLISD
Sbjct: 723  RDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISD 782

Query: 1092 DKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQP 913
            D+L F ASCYAA+VT++AL E+F+AAR IMGWLG+CAK+I ++N PVRWTTPLGLPVVQP
Sbjct: 783  DRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQP 842

Query: 912  YFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGLR 733
            Y+KS+RH+I+TSLQVLALQREG+LV+VRKQRTAFPPNFVHSLDG+HMM+TA+ACR+AGLR
Sbjct: 843  YYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 902

Query: 732  FAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGDF 553
            FAGVHDSFWTHACDVDRMN ILR+KFVELYSMPVLE+LLE F+           P RGDF
Sbjct: 903  FAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDF 962

Query: 552  DLEKVLESPYFFN 514
            DL++VL+SPYFFN
Sbjct: 963  DLQEVLKSPYFFN 975


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1284 bits (3323), Expect = 0.0
 Identities = 631/913 (69%), Positives = 758/913 (83%)
 Frame = -3

Query: 3252 VSDATDHNYTGNAENMSNLQVIPNGFPSKLPSESGGRVFIRDPPWISALFMKNLLFRSKK 3073
            ++D+   N+T   +N  NLQ+  +        ES  R+FI+DPPWI++LF+K L    +K
Sbjct: 67   LADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGLYKCVQK 126

Query: 3072 SSGIKLEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKL 2893
               +KLEF E+E+RKY  LRRRQ+KAETEAW+ MV            +KLAPNLPY KKL
Sbjct: 127  E--VKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKL 184

Query: 2892 MLGWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAK 2713
             LGWF+P + AIE+EQ  +RS+K KAAFAP I+ L ADK+A IVM+K+M LLMM  ++  
Sbjct: 185  FLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMGLLMMAAQDG- 243

Query: 2712 SVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIK 2533
             V+VV+AAVQIG AIEQEVRIQ+ L+K +++Q+ +V A+  E  +KE  +LR++V  LI+
Sbjct: 244  CVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRAD-TECLTKEKEVLRKQVNGLIR 302

Query: 2532 RNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFR 2353
            R ++ EVQKLL+ EEF++WGRDTQAKLG  L+ELL +SA++QPP+ Q+ADSPPD+RPAF 
Sbjct: 303  RRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFW 362

Query: 2352 HIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGY 2173
            H FK  A+ PGQ+ VKKYG +ECDP+VL GLD+T +HM+IPY+PMLVPPK+WKGYDKGG+
Sbjct: 363  HGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGH 422

Query: 2172 LFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAG 1993
             FLPSY+MRTHGS RQQDA++ +  KQMQKV+EALD LG+TKWRVNR +L+VVE+LWA G
Sbjct: 423  FFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQG 482

Query: 1992 GDVAGLVNRENVPIPELLSDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNMK 1813
            G+ AGLV+R++VPIPE    D  E+           KINQE HSQRCDVELKLSVAR MK
Sbjct: 483  GNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMK 542

Query: 1812 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLY 1633
            DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGKSGL WLKIHLANLY
Sbjct: 543  DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLY 602

Query: 1632 GGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSS 1453
             GGVEKLSYD R++FV++++  I DSA N +NG+RWWL AEDPFQCLAAC+NLSEALKSS
Sbjct: 603  AGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSS 662

Query: 1452 SPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIMK 1273
            +PHTVIS+LPIHQDGSCNGLQHYAALGRD+ EAAAVNLVAG++P+DVYSEIA RVH IM 
Sbjct: 663  APHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMI 722

Query: 1272 RDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLISD 1093
            RD+ KDP T+PNA LAKLLI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKGLISD
Sbjct: 723  RDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISD 782

Query: 1092 DKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQP 913
            D+L F ASCYAA+VT++AL E+F+AAR IMGWLG+CAK+I ++N PVRWTTPLGLPVVQP
Sbjct: 783  DRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQP 842

Query: 912  YFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGLR 733
            Y+KS+RH+I+TSLQVLALQREG+LV+VRKQRTAFPPNFVHSLDG+HMM+TA+ACR+AGLR
Sbjct: 843  YYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLR 902

Query: 732  FAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGDF 553
            FAGVHDSFWTHACDVDRMN ILR+KFVELYSMPVLE+LLE F+           P RGDF
Sbjct: 903  FAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDF 962

Query: 552  DLEKVLESPYFFN 514
            DL++VL+SPYFFN
Sbjct: 963  DLQEVLKSPYFFN 975


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1283 bits (3321), Expect = 0.0
 Identities = 629/882 (71%), Positives = 740/882 (83%), Gaps = 1/882 (0%)
 Frame = -3

Query: 3156 ESGGRVFIRDPPWISALFMKNLLFRSKKSSGIKLEFQEMERRKYYSLRRRQVKAETEAWQ 2977
            ES  +VFI+DPPWISA F K +   + K   +K+EF+++E+RKY  LRRRQ++ ETEAW+
Sbjct: 4    ESSKKVFIQDPPWISAHFWKGMYKLANKK--VKVEFKDIEKRKYNLLRRRQIREETEAWE 61

Query: 2976 NMVXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNVRRSQKNKAAFAPFI 2797
             M             RKLAPNLPY K L+LGWF+P +EAIEKEQ + +S+K K+AF+P I
Sbjct: 62   RMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNI 121

Query: 2796 DALPADKIAIIVMHKLMSLLMMGGKEAKSVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQ 2617
            + LPADK+A+IVMHK+M LLM+G ++   VRVV+AAVQIG+AIEQEVRI NFL+K KN Q
Sbjct: 122  ELLPADKMAVIVMHKMMGLLMVGHEDG-CVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQ 180

Query: 2616 KKEVVAEGEEDSSKEVTILRQRVKRLIKRNRVAEVQKLLRSEEFESWGRDTQAKLGCCLL 2437
            +K+ + E +E   KE  +LR+RV  LI+R R+ EVQ L++ +E + W R TQAKLG  L+
Sbjct: 181  RKKTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLI 240

Query: 2436 ELLTQSAYVQPPIDQTADSPPDVRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLD 2257
            ELLT++AYVQPP++Q+ D PPDVRPAFRHIFK   + PGQ IVKKYG IECDPL+L GLD
Sbjct: 241  ELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLD 300

Query: 2256 KTVRHMIIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVY 2077
             T +HM+IPY PMLVPPK+WKGYDKGG+LFLPSY+MRTHGSR+QQ AVR+VP KQMQKV+
Sbjct: 301  GTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVF 360

Query: 2076 EALDTLGNTKWRVNRRILNVVENLWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXX 1900
            EALDTLGNTKWRVNRR+L+VVE +W +GG++AGLV+RE++PIPE   SDD  EI      
Sbjct: 361  EALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWS 420

Query: 1899 XXXXXKINQERHSQRCDVELKLSVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDL 1720
                 KINQERHSQRCD ELKLSVAR +KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDL
Sbjct: 421  VRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDL 480

Query: 1719 CRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENNIAEILDSADNSL 1540
            CRG+LEF +GRPLGKSGLRWLKIHLANLY GGVEKLS+D R++FVEN+++EI DSA N +
Sbjct: 481  CRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPV 540

Query: 1539 NGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSF 1360
            NG RWWLKAEDPFQCLAACINLSEAL S+SPHTVISHLPIHQDGSCNGLQHYAALGRD+ 
Sbjct: 541  NGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTL 600

Query: 1359 EAAAVNLVAGDQPSDVYSEIAERVHIIMKRDSEKDPETDPNALLAKLLIGQVDRKLVKQT 1180
            EAAAVNLVA ++PSDVYSEIA RVH I++RDS KDP T+P+ALLAK+L+ QVDRKLVKQT
Sbjct: 601  EAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQT 660

Query: 1179 VMTSVYGVTYVGAREQIKRRLEEKGLISDDKLLFSASCYAARVTMAALEELFQAARAIMG 1000
            VMTSVYGVTYVGAREQIKRRLEEKG I+DD+LLFSA+CY A+VT+ AL ELFQAAR IM 
Sbjct: 661  VMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMS 720

Query: 999  WLGNCAKIIGQENHPVRWTTPLGLPVVQPYFKSQRHVIKTSLQVLALQREGDLVEVRKQR 820
            WLG+CAKII  E+ PV+WTTPLGLPVVQPY+K++RH+IKTSLQ+LALQREG  V+VRKQR
Sbjct: 721  WLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQR 780

Query: 819  TAFPPNFVHSLDGTHMMMTAIACRNAGLRFAGVHDSFWTHACDVDRMNQILRQKFVELYS 640
            TAFPPNFVHSLDG+HMMMTA+ACR+AGL FAGVHDSFWTHA DVD MN+ILR+KFVELY+
Sbjct: 781  TAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYN 840

Query: 639  MPVLENLLESFQXXXXXXXXXXXPERGDFDLEKVLESPYFFN 514
            MP+LENLLE FQ           PERG+FDL+KVL SPYFFN
Sbjct: 841  MPILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1275 bits (3298), Expect = 0.0
 Identities = 628/889 (70%), Positives = 738/889 (83%), Gaps = 1/889 (0%)
 Frame = -3

Query: 3177 FPSKLPSESGGRVFIRDPPWISALFMKNLLFRSKKSSGIKLEFQEMERRKYYSLRRRQVK 2998
            F   +  ES  RVFIRD PWISAL+ K     + K   +KLE +++E+RKY  LRRRQ++
Sbjct: 97   FDQIVHGESSKRVFIRDSPWISALYWKGTHKIANKK--VKLELKDIEKRKYNLLRRRQIR 154

Query: 2997 AETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNVRRSQKNK 2818
             ETEAW+ M             RKLAPNLPY K L LGWF+P +EAIE+EQ + +S+K K
Sbjct: 155  EETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQK 214

Query: 2817 AAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAKSVRVVEAAVQIGVAIEQEVRIQNFL 2638
            +AF+P I+ LPADK+A+IVMHK+M L+M+G ++   VRVV+AAVQIG+AIEQEVRI NFL
Sbjct: 215  SAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDG-CVRVVQAAVQIGIAIEQEVRIHNFL 273

Query: 2637 KKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIKRNRVAEVQKLLRSEEFESWGRDTQA 2458
            +K KN Q+K+ + + +E   KE  +LR+RV  LI+R R+ EVQ L+  +E + W RD QA
Sbjct: 274  EKTKNHQRKKTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDETKPWNRDKQA 333

Query: 2457 KLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFRHIFKIAAREPGQSIVKKYGAIECDP 2278
            KLG  L+ELLT++AYVQPP+DQ+   PPDVRPAFRHIFK   + PGQ  VKKYG IECDP
Sbjct: 334  KLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDP 393

Query: 2277 LVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTHGSRRQQDAVRAVPV 2098
            L+L GLD T +HM+IPY PMLVPPK+W+GYDKGG+LFLPSY+MRTHGSR+QQDAVR+VP 
Sbjct: 394  LILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPG 453

Query: 2097 KQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAGGDVAGLVNRENVPIPELLS-DDEKE 1921
            KQMQKV+EALDTLGNTKWRVN ++L+VVE +WA+GG+ AGLVNR ++PIPE LS DD  E
Sbjct: 454  KQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTE 513

Query: 1920 IXXXXXXXXXXXKINQERHSQRCDVELKLSVARNMKDEEGFYYPHNLDFRGRAYPMHPHL 1741
            I           KINQERHSQRCD ELKLSVAR +KDEEGFYYPHNLDFRGRAYPMHPHL
Sbjct: 514  IQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHL 573

Query: 1740 NHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENNIAEIL 1561
             HLSSDLCRG+LEFA+GRPLGKSGL WLKIHLANLY GGVEKLS+D R++FVEN+++EI 
Sbjct: 574  THLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIF 633

Query: 1560 DSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYA 1381
            DSA+N +NG RWWL AEDPFQCLAACINLSEALKS+SPHTVISHLPIHQDGSCNGLQHYA
Sbjct: 634  DSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYA 693

Query: 1380 ALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIMKRDSEKDPETDPNALLAKLLIGQVD 1201
            ALGRDS EAAAVNLVA ++PSDVYSEIA RVH I++RDS KDP T+P+ALLAK+LI +VD
Sbjct: 694  ALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVD 753

Query: 1200 RKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLISDDKLLFSASCYAARVTMAALEELFQ 1021
            RKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I+DD++LFSA+CYAA+VT+ AL ELFQ
Sbjct: 754  RKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQ 813

Query: 1020 AARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQPYFKSQRHVIKTSLQVLALQREGDL 841
            AAR IMGWLG+CAK+I  E+ PVRWTTPLGLPVVQPY+K+QRH+I+TSLQVLALQREG  
Sbjct: 814  AARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSS 873

Query: 840  VEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGLRFAGVHDSFWTHACDVDRMNQILRQ 661
            V+VRKQRTAFPPNFVHSLDG+HMMMTA+ACR+A LRFAGVHDSFWTHA D D MN+ILR+
Sbjct: 874  VQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILRE 933

Query: 660  KFVELYSMPVLENLLESFQXXXXXXXXXXXPERGDFDLEKVLESPYFFN 514
            KFVELY+MP+LENLLE FQ           PERG+FDL++VL SPYFFN
Sbjct: 934  KFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1263 bits (3269), Expect = 0.0
 Identities = 622/912 (68%), Positives = 750/912 (82%), Gaps = 5/912 (0%)
 Frame = -3

Query: 3234 HNYTGNAENMSNLQVIPNGFPSK----LPSESGGRVFIRDPPWISALFMKNLLFRSKKSS 3067
            H    N E  ++L VIP    S     +  E   R+F++DPPW S++F+K L  R K   
Sbjct: 105  HQRVENTETCADL-VIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQ- 162

Query: 3066 GIKLEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKLML 2887
                E++EM++RK+  LRRRQVK ETEAW+ MV            ++LAPNLP+ K L L
Sbjct: 163  ----EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFL 218

Query: 2886 GWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAKSV 2707
            GWF P REAIE+EQ ++R++K KAA+AP I+ LPADK+A+IVMHK+M L+M  G E + V
Sbjct: 219  GWFGPLREAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVM-AGHEDRCV 277

Query: 2706 RVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIKRN 2527
            +VV+AAV IG+AIEQE+RI +FL+K KN ++K+++A+ EE  SKE  +LR+RV  LIK  
Sbjct: 278  QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK 337

Query: 2526 RVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFRHI 2347
            RV E QKLL++EE + WGRDTQAKLG  L+ELL ++AYVQ P++    SPPDVRPAFRH 
Sbjct: 338  RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 397

Query: 2346 FKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGYLF 2167
            FK   + PGQ   K+YG +ECDPLVL GLD++ +HM+IPYVPMLVPPK+WKGY+KGGYLF
Sbjct: 398  FKTILKHPGQKTTKRYGVVECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 457

Query: 2166 LPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAGGD 1987
            LPSY+MRTHGSR+QQ+A+++V    M+KV+EALDTLG+TKWRVN+++L+V+E++W +GG+
Sbjct: 458  LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 517

Query: 1986 VAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNMKD 1810
            +AGLV+R +VPIPE  LS+D  E+           KINQERHSQRCD ELKLSVAR MKD
Sbjct: 518  IAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 577

Query: 1809 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLYG 1630
            EEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFA+GRPLGKSGLRWLKIHLANL+ 
Sbjct: 578  EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 637

Query: 1629 GGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSS 1450
            GGVEKLS+D R++FVEN++ EI DSA+N +NG+RWWL AEDPFQCLAACINLSEALKSSS
Sbjct: 638  GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 697

Query: 1449 PHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIMKR 1270
            PH+VISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAG++P+DVYSEIA RVH IMKR
Sbjct: 698  PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 757

Query: 1269 DSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLISDD 1090
            DS KDP   P ALLAK+LI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I+DD
Sbjct: 758  DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 817

Query: 1089 KLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQPY 910
            + LF+A+CYAA+VT+ AL E+F+AAR+IMGWLG+CAK+I  EN PVRWTTPLGLPVVQPY
Sbjct: 818  RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY 877

Query: 909  FKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGLRF 730
             K++RH+I+TSLQVLALQREG  VE+RKQRTAFPPNFVHSLDG+HMMMTA+ACR+AGL F
Sbjct: 878  CKNERHLIRTSLQVLALQREGKSVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 937

Query: 729  AGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGDFD 550
            AGVHDSFWTHACDVD MNQILR+KFVELY+MP+LENLLESFQ           PERG+FD
Sbjct: 938  AGVHDSFWTHACDVDEMNQILRKKFVELYNMPILENLLESFQTSYPTLSFPPLPERGNFD 997

Query: 549  LEKVLESPYFFN 514
            LE+VLESPYFFN
Sbjct: 998  LEEVLESPYFFN 1009


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1254 bits (3245), Expect = 0.0
 Identities = 611/882 (69%), Positives = 738/882 (83%), Gaps = 1/882 (0%)
 Frame = -3

Query: 3156 ESGGRVFIRDPPWISALFMKNLLFRSKKSSGIKLEFQEMERRKYYSLRRRQVKAETEAWQ 2977
            +   R+F++DPPW++ LFMK L+     ++G++LEF+E+ER KY  LRRRQ+KAETEAW+
Sbjct: 114  KGSSRIFMQDPPWVNTLFMKGLV---DSNTGLRLEFKEIEREKYNLLRRRQIKAETEAWE 170

Query: 2976 NMVXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNVRRSQKNKAAFAPFI 2797
            +MV            +KLAPNLP  K L LGWF+P ++AIEKEQ  +RS+K KA +   I
Sbjct: 171  SMVEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHI 230

Query: 2796 DALPADKIAIIVMHKLMSLLMMGGKEAKSVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQ 2617
            D LPADK+A+IVMHK+MSLLM+G  +A  VR+V+AA+QIG AIEQE++I +FL+K KN +
Sbjct: 231  DMLPADKMAVIVMHKMMSLLMVGN-DAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIR 289

Query: 2616 KKEVVAEGEEDSSKEVTILRQRVKRLIKRNRVAEVQKLLRSEEFESWGRDTQAKLGCCLL 2437
            K    ++  ED  KE  I R RVK LIKR R+ E  KL+ SE+ +SW +DTQAKLG  L+
Sbjct: 290  KN--ASDLPEDLLKEKEIQRNRVKSLIKRKRLFEAAKLVTSEDSKSWSQDTQAKLGSRLI 347

Query: 2436 ELLTQSAYVQPPIDQTADSPPDVRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLD 2257
            ELL  +AY+Q P  Q+AD+PPDVRPAFRH FKI   E GQ +VK+YG IECDPLVL G+D
Sbjct: 348  ELLIDTAYIQHPTSQSADTPPDVRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGID 407

Query: 2256 KTVRHMIIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVY 2077
            ++ R+MIIPYVPML+PPK WKGYDKGGYLFLPSY+MRTHGSR+QQDA+R  P +QMQKV+
Sbjct: 408  RSARYMIIPYVPMLIPPKNWKGYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVF 467

Query: 2076 EALDTLGNTKWRVNRRILNVVENLWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXX 1900
            EAL+TLG+TKWR+NR++L VVENLWA+GG++ GLVN ++VP+PE  L++D  EI      
Sbjct: 468  EALNTLGHTKWRINRKVLGVVENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWS 527

Query: 1899 XXXXXKINQERHSQRCDVELKLSVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDL 1720
                 KIN+ERH+ RCDVELK+SVA+ MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDL
Sbjct: 528  VRKAKKINRERHALRCDVELKISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDL 587

Query: 1719 CRGILEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENNIAEILDSADNSL 1540
            CRG+LEFA GRPLGK+GL WLKIHLAN+Y GGV+KLSY+AR +FVEN++ E+ DSA N +
Sbjct: 588  CRGVLEFASGRPLGKTGLHWLKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPI 647

Query: 1539 NGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSF 1360
            NGNRWWL AEDPFQCLAACI+L+ AL SSSPH+ IS+LPIHQDGSCNGLQHYAALGRDS 
Sbjct: 648  NGNRWWLSAEDPFQCLAACIDLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSK 707

Query: 1359 EAAAVNLVAGDQPSDVYSEIAERVHIIMKRDSEKDPETDPNALLAKLLIGQVDRKLVKQT 1180
            EAAAVNLVAG++P+DVYSEIA RV  IM++DS KDP+TDP+A+LAK+L+ QVDRKLVKQT
Sbjct: 708  EAAAVNLVAGEEPADVYSEIAVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQT 767

Query: 1179 VMTSVYGVTYVGAREQIKRRLEEKGLISDDKLLFSASCYAARVTMAALEELFQAARAIMG 1000
            VMTSVYGVT+VGAREQIKRRLEEKG+I+DD+LLFSA+CY+A+VTM+AL +LFQAAR IM 
Sbjct: 768  VMTSVYGVTFVGAREQIKRRLEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMD 827

Query: 999  WLGNCAKIIGQENHPVRWTTPLGLPVVQPYFKSQRHVIKTSLQVLALQREGDLVEVRKQR 820
            WLG+CAK+I  EN PVRWTTPLGLPVVQPY KS+RH+IKTSLQVLALQ+EG+ +EV+KQR
Sbjct: 828  WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQR 887

Query: 819  TAFPPNFVHSLDGTHMMMTAIACRNAGLRFAGVHDSFWTHACDVDRMNQILRQKFVELYS 640
            TAFPPN+VHSLDGTHMMMTA+ACR+AGL+FAGVHDSFWTHACDV++MNQILR KFVELY+
Sbjct: 888  TAFPPNYVHSLDGTHMMMTAVACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKFVELYN 947

Query: 639  MPVLENLLESFQXXXXXXXXXXXPERGDFDLEKVLESPYFFN 514
            MP+LENLLESFQ           PERGDFDLE+VLESPYFFN
Sbjct: 948  MPILENLLESFQTAYPASTFPPLPERGDFDLEEVLESPYFFN 989


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1254 bits (3244), Expect = 0.0
 Identities = 610/878 (69%), Positives = 737/878 (83%), Gaps = 1/878 (0%)
 Frame = -3

Query: 3144 RVFIRDPPWISALFMKNLLFRSKKSSGIKLEFQEMERRKYYSLRRRQVKAETEAWQNMVX 2965
            R+F++DPPW S++F+K L  R K       E++EM++RK+  LRRRQVK ETEAW+ MV 
Sbjct: 141  RIFVQDPPWFSSIFLKGLYKRIKLQ-----EYREMKKRKFNLLRRRQVKQETEAWERMVD 195

Query: 2964 XXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALP 2785
                       ++LAPNLP+ K L LGWF P  EAIE+EQ ++R++K KAA+AP I+ LP
Sbjct: 196  EYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLP 255

Query: 2784 ADKIAIIVMHKLMSLLMMGGKEAKSVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEV 2605
            ADK+A+IVMHK+M L+M  G E + V+VV+AAV IG+AIEQE+RI +FL+K KN ++K++
Sbjct: 256  ADKMAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKI 314

Query: 2604 VAEGEEDSSKEVTILRQRVKRLIKRNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLT 2425
            +A+ EE  SKE  +LR+RV  LIK  RV E QKLL++EE + WGRDTQAKLG  L+ELL 
Sbjct: 315  IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLI 374

Query: 2424 QSAYVQPPIDQTADSPPDVRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVR 2245
            ++AYVQ P++    SPPDVRPAFRH FK   + PGQ   K+YG +ECDPLVL GLD++ +
Sbjct: 375  ETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK 434

Query: 2244 HMIIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALD 2065
            HM+IPYVPMLVPPK+WKGY+KGGYLFLPSY+MRTHGSR+QQ+A+++V    M+KV+EALD
Sbjct: 435  HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALD 494

Query: 2064 TLGNTKWRVNRRILNVVENLWAAGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXX 1888
            TLG+TKWRVN+++L+V+E++W +GG++AGLV+R +V IPE  LS+D  E+          
Sbjct: 495  TLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKA 554

Query: 1887 XKINQERHSQRCDVELKLSVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1708
             KINQERHSQRCD ELKLSVAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+
Sbjct: 555  KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614

Query: 1707 LEFADGRPLGKSGLRWLKIHLANLYGGGVEKLSYDARVSFVENNIAEILDSADNSLNGNR 1528
            LEFA+GRPLGKSGLRWLKIHLANL+ GGVEKLS+D R++FVEN++ EI DSA+N +NG+R
Sbjct: 615  LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674

Query: 1527 WWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 1348
            WWL AEDPFQCLAACINL+EALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR++ EAAA
Sbjct: 675  WWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734

Query: 1347 VNLVAGDQPSDVYSEIAERVHIIMKRDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTS 1168
            VNLVAG++P+DVYSEIA RVH IMKRDS KD    P ALLAK+LI QVDRKLVKQTVMTS
Sbjct: 735  VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTVMTS 794

Query: 1167 VYGVTYVGAREQIKRRLEEKGLISDDKLLFSASCYAARVTMAALEELFQAARAIMGWLGN 988
            VYGVT+VGAREQIKRRLEEKG I+DD+ LF+A+CYAA+VT+ AL E+F+AAR+IMGWLG+
Sbjct: 795  VYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD 854

Query: 987  CAKIIGQENHPVRWTTPLGLPVVQPYFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFP 808
            CAK+I  EN PVRWTTPLGLPVVQPY K++RH+I+TSLQVLALQREG+LVE+RKQRTAFP
Sbjct: 855  CAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFP 914

Query: 807  PNFVHSLDGTHMMMTAIACRNAGLRFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVL 628
            PNFVHSLDG+HMMMTA+ACR+AGL FAGVHDSFWTHACDVD MNQILR+KFVELY+MP+L
Sbjct: 915  PNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPML 974

Query: 627  ENLLESFQXXXXXXXXXXXPERGDFDLEKVLESPYFFN 514
            ENLLESFQ           PERG+FDLE+VLESPYFFN
Sbjct: 975  ENLLESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 1012


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
            gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
            superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1248 bits (3229), Expect = 0.0
 Identities = 611/854 (71%), Positives = 731/854 (85%), Gaps = 4/854 (0%)
 Frame = -3

Query: 3063 IKLEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKLMLG 2884
            +K+E +E+E+RKY  LRRRQVK ETEAW+ MV            +KLAPNLPY K L LG
Sbjct: 6    VKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLG 65

Query: 2883 WFQPFREAIEKEQNVRR--SQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKEAKS 2710
            WF+P REAI +EQ V++  S+K +AA+AP I+ LPADK+A+IVMHK+M L+M G +E   
Sbjct: 66   WFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVM-GAQENGF 124

Query: 2709 VRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRLIKR 2530
            V+VV+AAV IGVAIEQEVRI NFL+K KN Q+K+   E  +  SKE  IL++RV  LI+R
Sbjct: 125  VQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDE-VQGLSKEKEILKKRVNSLIRR 183

Query: 2529 NRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPAFRH 2350
             R+ EVQKL+++EE + WGRD QAKLG  LLELLT++AYVQPPIDQ+ DSPPDV+PAFRH
Sbjct: 184  RRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRH 243

Query: 2349 IFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKGGYL 2170
             FK  +++PG+ ++K+YG IECDPL+L GLD++ +HM+IPYVPMLVPPK+WKGYDKGGYL
Sbjct: 244  KFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYL 303

Query: 2169 FLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWAAGG 1990
            FLPSY+MRTHGSR+QQDA++ V VK+MQKV+EALDTLG+TKWRVN+++L VVE++WA+GG
Sbjct: 304  FLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGG 363

Query: 1989 DVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVARNMK 1813
            ++AGLV+R ++PIPE   S+D  E            KIN+ERHSQRCD ELKLSVAR M+
Sbjct: 364  NIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKME 423

Query: 1812 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLANLY 1633
            +EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLG+SGL WLKIHLANL+
Sbjct: 424  NEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLF 483

Query: 1632 GGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSS 1453
             GGVEKLS+D R++FV+N++ +I DSA+N +NGNRWWL AEDPFQCLAACINLSE+LKSS
Sbjct: 484  AGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSS 543

Query: 1452 SPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHIIMK 1273
            SPH+V+S+LPIHQDGSCNGLQHYAALGRDS EAAAVNLVAG++P+DVYSEIA RVH IMK
Sbjct: 544  SPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMK 603

Query: 1272 RDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLISD 1093
            RDS+KDP T+PNA LAKLLI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I+D
Sbjct: 604  RDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 663

Query: 1092 DKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPVVQP 913
            D++LF+A+CY A+VT+AAL ELFQAAR IMGWLG+CAK+I  EN PV+WTTPLGLPVVQP
Sbjct: 664  DRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQP 723

Query: 912  YFKSQRHVIKTSLQVLALQREGD-LVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNAGL 736
            Y+KS+RH+I+TSLQVLALQREGD +VEVRKQRTAFPPNFVHSLDG+HMMMTA+ACR+AGL
Sbjct: 724  YYKSERHLIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 783

Query: 735  RFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPERGD 556
             FAGVHDSFWTHACDV++MNQILR+KFVELYSMPVLENL ES Q           PERG+
Sbjct: 784  HFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGN 843

Query: 555  FDLEKVLESPYFFN 514
            FDL +VL+SPYFFN
Sbjct: 844  FDLREVLKSPYFFN 857


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 1233 bits (3189), Expect = 0.0
 Identities = 596/806 (73%), Positives = 698/806 (86%), Gaps = 1/806 (0%)
 Frame = -3

Query: 2928 KLAPNLPYFKKLMLGWFQPFREAIEKEQNVRRSQKNKAAFAPFIDALPADKIAIIVMHKL 2749
            KLAPNLPY K L LGWF+P REAI+KEQ  +R++K KAA+AP I+ LPADK+A+IVMHK+
Sbjct: 5    KLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKM 64

Query: 2748 MSLLMMGGKEAKSVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEV 2569
            M L+MMG +E   VRVV+AAVQIG+AIEQEVRI +FL+K KN ++ + V   +E   +E 
Sbjct: 65   MGLVMMGHEEG-CVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQE-GLREK 122

Query: 2568 TILRQRVKRLIKRNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQT 2389
             ILR+RVK  I++ ++ EVQKL+++EE   WGRDTQAKLG  L+ELLT++AYVQ P++Q+
Sbjct: 123  EILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQS 182

Query: 2388 ADSPPDVRPAFRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVP 2209
            AD PPDVRPAFRH FK   +E GQ   +KYG IECDPLVL GLD+T +HM+IPYVPML+P
Sbjct: 183  ADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIP 242

Query: 2208 PKRWKGYDKGGYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRR 2029
            PK+WKGYDKGGYLFLPSY+MRTHGSR+QQDAV++VP +Q+QKV+EALDTLGNTKWR+NRR
Sbjct: 243  PKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRR 302

Query: 2028 ILNVVENLWAAGGDVAGLVNRENVPIPELLS-DDEKEIXXXXXXXXXXXKINQERHSQRC 1852
            +L+VVE++WA GG++ GLV+RENVP+PE  S +D  EI           KINQERHS RC
Sbjct: 303  VLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRC 362

Query: 1851 DVELKLSVARNMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKS 1672
            D E+KLSVAR MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFA+GRPLGKS
Sbjct: 363  DTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKS 422

Query: 1671 GLRWLKIHLANLYGGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCL 1492
            GLRWLKI LANLY GGVEKLSYD R++FV+N++ ++ DSADN LNGNRWWL AEDPFQCL
Sbjct: 423  GLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCL 482

Query: 1491 AACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDV 1312
            AACINLSEAL+SSSPHTVISHLPIHQDGSCNGLQHYAALGR+S EA+AVNLVAG++P+DV
Sbjct: 483  AACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADV 542

Query: 1311 YSEIAERVHIIMKRDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQ 1132
            YSEIA RVH IMKRDS KDP TDP ALLAK+LIGQVDRKLVKQTVMTSVYGVTY+GAREQ
Sbjct: 543  YSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQ 602

Query: 1131 IKRRLEEKGLISDDKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPV 952
            IKRRL EKGLI+D++LLF+A+CYAA+VT+AAL E+FQAAR IM WLG CAK+I  EN PV
Sbjct: 603  IKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPV 662

Query: 951  RWTTPLGLPVVQPYFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHM 772
            +WTTPLGLPV+QPY KS+RH+I+TSLQVLALQREG +V +RKQRTAFPPNFVHSLDG+HM
Sbjct: 663  QWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHM 722

Query: 771  MMTAIACRNAGLRFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXX 592
            MMTA+ACR+AGL FAGVHDSFWTHACDVD+MNQILR+KFVELYSMP+LENLLESFQ    
Sbjct: 723  MMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHP 782

Query: 591  XXXXXXXPERGDFDLEKVLESPYFFN 514
                   P+RG+FDL +VLESPYFFN
Sbjct: 783  TLTFPPLPDRGNFDLREVLESPYFFN 808


>ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Capsella rubella]
            gi|482564829|gb|EOA29019.1| hypothetical protein
            CARUB_v10025273mg [Capsella rubella]
          Length = 991

 Score = 1223 bits (3165), Expect = 0.0
 Identities = 602/916 (65%), Positives = 740/916 (80%), Gaps = 8/916 (0%)
 Frame = -3

Query: 3237 DHNYTGNAENMSNLQVIPNGFPSKLPSESGG-----RVFIRDPPWISALFMKNLLFRSKK 3073
            D +Y G  +  S ++ + N      P E  G     R+F++DPPWISALF+K L      
Sbjct: 90   DSSYAGTIKGASLIEELEN------PVERNGLSGRRRLFMQDPPWISALFLKGL--SKMV 141

Query: 3072 SSGIKLEFQEMERRKYYSLRRRQVKAETEAWQNMVXXXXXXXXXXXXRKLAPNLPYFKKL 2893
               +K+E + +++RK+ SLRRRQVK ETEAW+ MV            + LAPNLPY K +
Sbjct: 142  DQTVKIEHKYIDKRKFDSLRRRQVKEETEAWEKMVDEYRDLEKEMCEKNLAPNLPYVKHM 201

Query: 2892 MLGWFQPFREAIEKEQNVRR--SQKNKAAFAPFIDALPADKIAIIVMHKLMSLLMMGGKE 2719
             LGWFQP ++ IE+EQ +++  S+K +AA+AP I+ LPADK+A+IVMHK+M L+M G ++
Sbjct: 202  FLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHED 261

Query: 2718 AKSVRVVEAAVQIGVAIEQEVRIQNFLKKEKNDQKKEVVAEGEEDSSKEVTILRQRVKRL 2539
               ++VV+AAV IG+AIEQEVRI NFLK+ + +      A   ++  KE  +LR+RV  L
Sbjct: 262  G-CIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNN-----AGDSQEELKEKQLLRKRVNSL 315

Query: 2538 IKRNRVAEVQKLLRSEEFESWGRDTQAKLGCCLLELLTQSAYVQPPIDQTADSPPDVRPA 2359
            I+R R+ +  K+++SE  + WGR TQAKLG  LLELL ++AYVQPP+ Q+ DS P+ RPA
Sbjct: 316  IRRKRIIDALKVVKSEGIKPWGRATQAKLGSRLLELLIETAYVQPPLTQSGDSIPEFRPA 375

Query: 2358 FRHIFKIAAREPGQSIVKKYGAIECDPLVLHGLDKTVRHMIIPYVPMLVPPKRWKGYDKG 2179
            FRH FK   + PG  +V++YG IECD L+L GLDK+ +HMIIPYVPMLVPPKRWKGYDKG
Sbjct: 376  FRHKFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMIIPYVPMLVPPKRWKGYDKG 435

Query: 2178 GYLFLPSYLMRTHGSRRQQDAVRAVPVKQMQKVYEALDTLGNTKWRVNRRILNVVENLWA 1999
            GYLFLPSY+MRTHGS++QQDA+R +  K   +V+EALDTLGNTKWRVNR+IL+VVE LWA
Sbjct: 436  GYLFLPSYIMRTHGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRVNRKILDVVERLWA 495

Query: 1998 AGGDVAGLVNRENVPIPEL-LSDDEKEIXXXXXXXXXXXKINQERHSQRCDVELKLSVAR 1822
             GG++AGLVNRE+VPIPE   S+D +E+           KIN+ERHS RCDVELKLSVAR
Sbjct: 496  DGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSVRKANKINRERHSLRCDVELKLSVAR 555

Query: 1821 NMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFADGRPLGKSGLRWLKIHLA 1642
             MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFA+GRPLGKSGL WLKIHLA
Sbjct: 556  KMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLA 615

Query: 1641 NLYGGGVEKLSYDARVSFVENNIAEILDSADNSLNGNRWWLKAEDPFQCLAACINLSEAL 1462
            NLY GGVEKLS+DAR++FVE ++ +++DSA+N ++G RWWLKAEDPFQCLAAC+ L++AL
Sbjct: 616  NLYAGGVEKLSHDARLAFVETHLDDVMDSAENPIHGKRWWLKAEDPFQCLAACVILTQAL 675

Query: 1461 KSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDQPSDVYSEIAERVHI 1282
            KS SP++VISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAG++P+DVYSEI+ RVH 
Sbjct: 676  KSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHE 735

Query: 1281 IMKRDSEKDPETDPNALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGL 1102
            IMK+DS KDPE++P A LAK+LI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG+
Sbjct: 736  IMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGV 795

Query: 1101 ISDDKLLFSASCYAARVTMAALEELFQAARAIMGWLGNCAKIIGQENHPVRWTTPLGLPV 922
            I+D+++LF+A+CY+A+VT+AAL E+F+AARAIM WLG+CAKII  +NHPVRW TPLGLPV
Sbjct: 796  ITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPV 855

Query: 921  VQPYFKSQRHVIKTSLQVLALQREGDLVEVRKQRTAFPPNFVHSLDGTHMMMTAIACRNA 742
            VQPY +S+RH+I+TSLQVLALQREG+ V+VRKQRTAFPPNFVHSLDGTHMMMTA+ACR A
Sbjct: 856  VQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREA 915

Query: 741  GLRFAGVHDSFWTHACDVDRMNQILRQKFVELYSMPVLENLLESFQXXXXXXXXXXXPER 562
            GL FAGVHDS+WTHACDVD MN+ILR+KFVELY+ P+LE+LL+SFQ           P+R
Sbjct: 916  GLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKR 975

Query: 561  GDFDLEKVLESPYFFN 514
            GDFDL++VL+S YFFN
Sbjct: 976  GDFDLKEVLKSQYFFN 991