BLASTX nr result
ID: Mentha27_contig00011759
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha27_contig00011759
(1976 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus... 597 e-168
emb|CBI40014.3| unnamed protein product [Vitis vinifera] 545 e-152
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-... 545 e-152
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis] 535 e-149
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac... 532 e-148
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-... 527 e-147
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-... 524 e-146
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-... 524 e-146
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr... 520 e-144
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-... 508 e-141
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ... 501 e-139
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-... 498 e-138
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-... 495 e-137
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich... 493 e-136
emb|CAD20831.2| sigma factor [Spinacia oleracea] 491 e-136
ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-... 481 e-133
ref|XP_007203880.1| hypothetical protein PRUPE_ppa006657mg [Prun... 480 e-132
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps... 479 e-132
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab... 478 e-132
ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha... 474 e-131
>gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus guttatus]
Length = 589
Score = 597 bits (1538), Expect = e-168
Identities = 345/596 (57%), Positives = 388/596 (65%), Gaps = 32/596 (5%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXV--L 1544
MSCLLPQFKCSPDTFAVNF SR++INFRTQC+L L
Sbjct: 1 MSCLLPQFKCSPDTFAVNFKSQTLFTVHSSKSRESINFRTQCVLSTTSPPPTMAATTTLL 60
Query: 1543 ELEKXXXXXXXXXXXXXXXXXXXXLEKAPS----LDS-HQIPFVAERPLTYVGAVGPPSE 1379
E EK +A + LD +P + + LTYVG+VGPPSE
Sbjct: 61 EFEKLQLSPLETIPNSLPADRSWTTPRAKTSLLDLDKLTSLPVASNKTLTYVGSVGPPSE 120
Query: 1378 IRLGPNMDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGV 1199
I LG N+D+ L+TS++ VIT +MM+SLH
Sbjct: 121 INLGANLDKEALITSDEAVITAAASEALALAKAAVKVAKDAAMMVSLHRSTKPDTKS--- 177
Query: 1198 LPEVDTHPVETIFREAKVGEIGLSGNFLASDPVAEPDEVEPXXXXXXXXXXXXXXSIAVR 1019
EVDT + REA++G + L D EP SIAVR
Sbjct: 178 FLEVDTSAERVVVREAEIGSGENDDHVLGESD----DSEEPSAEELELLDLQLSSSIAVR 233
Query: 1018 SKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSSRLL 839
SKRQ +N+ QE+DYSDPLRYLR TTSS+RLL
Sbjct: 234 SKRQIERKVRRGRAAEKAAANVVSVKSGSSKKKRSPV-QEVDYSDPLRYLRATTSSTRLL 292
Query: 838 TASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGVLCK 659
TASEEQ+LSEGIQVLLK+E+LQ EL +RFG P+++QWAAAAGVDQKTLR+Q+NYG+LCK
Sbjct: 293 TASEEQVLSEGIQVLLKLERLQVELIERFGGEPSYSQWAAAAGVDQKTLREQINYGILCK 352
Query: 658 DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWWIK 479
DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG+EKFDA+KGFKFSTYAHWWIK
Sbjct: 353 DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIK 412
Query: 478 QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLSMKRLSA 299
QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL+SENG+VPNDEEVAEATGLSMKRLSA
Sbjct: 413 QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRVPNDEEVAEATGLSMKRLSA 472
Query: 298 VMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDLA----------- 152
VMLTPK PRSLDQKIG+NQDLKPS+VI+DPEAETSEELLIKQFM+QDLA
Sbjct: 473 VMLTPKPPRSLDQKIGVNQDLKPSEVISDPEAETSEELLIKQFMKQDLADVLDSLNPREK 532
Query: 151 --------------XXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 26
GELMGVSRER+RQIESCAFRKLKNKKRTK LQQYVM
Sbjct: 533 QVVKWRFGIEDGRMKTLQEIGELMGVSRERVRQIESCAFRKLKNKKRTKQLQQYVM 588
>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 545 bits (1404), Expect = e-152
Identities = 318/603 (52%), Positives = 372/603 (61%), Gaps = 38/603 (6%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXV-LE 1541
MSCLLPQFKC PDTF+ + +R+ I FR QC L L+
Sbjct: 1 MSCLLPQFKCPPDTFSTH-----PKLHILSKNREAIYFRVQCALSTTSPPLSTSTTAVLD 55
Query: 1540 LEKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPN 1361
+EK + PSL+SH A RP TY+G VGPP+E
Sbjct: 56 IEKL---------------------RLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEAT 94
Query: 1360 MDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGVLPEVDT 1181
+ LLTSE+ VI + ++ + L DT
Sbjct: 95 LARETLLTSEEAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDT 154
Query: 1180 HPVETI-FREAKVGEIGLSGNFLAS-----------DPVAEPDEVEPXXXXXXXXXXXXX 1037
I F E + IG+ G+ + + D + D++EP
Sbjct: 155 SQFRRIQFTETE--RIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFS 212
Query: 1036 XSIAVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTT 857
SI VRS RQ + + +QE+DYSDPLRYLRGTT
Sbjct: 213 KSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTT 272
Query: 856 SSSRLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLN 677
S+SRLLTA+EE LSEGIQ LLK+EKLQ++L +RFG PTFAQWAAAAGVDQKTLR++ N
Sbjct: 273 STSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTN 332
Query: 676 YGVLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTY 497
YG+ CKDKMIKSNIRLVISIAKNYQGAGMN+QDLVQEGCRGLVRG+EKFDASKGFKFSTY
Sbjct: 333 YGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTY 392
Query: 496 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLS 317
AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL+SENG+ PN+EEVAEATGLS
Sbjct: 393 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 452
Query: 316 MKRLSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL------ 155
MKRL+AV+LTPKAPRSLDQKIG+NQ+LKPS+VIADP+AET+EELLIKQFMR+DL
Sbjct: 453 MKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNS 512
Query: 154 -------------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 32
GELMGVSRERIRQIESCAFRKLKNK+RTKHLQQY
Sbjct: 513 LNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQY 572
Query: 31 VMA 23
+++
Sbjct: 573 LVS 575
>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 545 bits (1404), Expect = e-152
Identities = 318/603 (52%), Positives = 372/603 (61%), Gaps = 38/603 (6%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXV-LE 1541
MSCLLPQFKC PDTF+ + +R+ I FR QC L L+
Sbjct: 1 MSCLLPQFKCPPDTFSTH--PKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLD 58
Query: 1540 LEKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPN 1361
+EK + PSL+SH A RP TY+G VGPP+E
Sbjct: 59 IEKL---------------------RLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEAT 97
Query: 1360 MDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGVLPEVDT 1181
+ LLTSE+ VI + ++ + L DT
Sbjct: 98 LARETLLTSEEAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDT 157
Query: 1180 HPVETI-FREAKVGEIGLSGNFLAS-----------DPVAEPDEVEPXXXXXXXXXXXXX 1037
I F E + IG+ G+ + + D + D++EP
Sbjct: 158 SQFRRIQFTETE--RIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFS 215
Query: 1036 XSIAVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTT 857
SI VRS RQ + + +QE+DYSDPLRYLRGTT
Sbjct: 216 KSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTT 275
Query: 856 SSSRLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLN 677
S+SRLLTA+EE LSEGIQ LLK+EKLQ++L +RFG PTFAQWAAAAGVDQKTLR++ N
Sbjct: 276 STSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTN 335
Query: 676 YGVLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTY 497
YG+ CKDKMIKSNIRLVISIAKNYQGAGMN+QDLVQEGCRGLVRG+EKFDASKGFKFSTY
Sbjct: 336 YGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTY 395
Query: 496 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLS 317
AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL+SENG+ PN+EEVAEATGLS
Sbjct: 396 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 455
Query: 316 MKRLSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL------ 155
MKRL+AV+LTPKAPRSLDQKIG+NQ+LKPS+VIADP+AET+EELLIKQFMR+DL
Sbjct: 456 MKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNS 515
Query: 154 -------------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 32
GELMGVSRERIRQIESCAFRKLKNK+RTKHLQQY
Sbjct: 516 LNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQY 575
Query: 31 VMA 23
+++
Sbjct: 576 LVS 578
>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 574
Score = 535 bits (1377), Expect = e-149
Identities = 308/595 (51%), Positives = 366/595 (61%), Gaps = 30/595 (5%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXS----RDTINFRTQCILXXXXXXXXXXXX 1550
MSCLLPQF C PDTF+ F RD IN QC+L
Sbjct: 1 MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARD-INSLAQCVLSTTSPSTSVGAT 59
Query: 1549 V-LELEKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIR 1373
L +EK + PSLD++ + RP TY GA GPP E
Sbjct: 60 YVLSVEKL---------------------RFPSLDANSESVTSNRPWTYTGATGPPVEAN 98
Query: 1372 LGPNMDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGVLP 1193
+ LLTSE+ VI ++++ +
Sbjct: 99 FEATLATETLLTSEEAVIAAAAAEAVTLAKAAVKVAKDAALLVRPSTRAESISLVSSEAR 158
Query: 1192 EVDTHPVETIFREAKVGEIGLSGNFLASDPVAEPDEVEPXXXXXXXXXXXXXXSIAVRSK 1013
+ T + R++ E+ L + D E ++++P SIAVRS+
Sbjct: 159 NIKTAQAASRVRDSLRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSR 218
Query: 1012 RQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSSRLLTA 833
RQ +N+ VQ++D+SDPLRYLR TTS+SRLLTA
Sbjct: 219 RQSERKAKRDRAAEKAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTA 278
Query: 832 SEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGVLCKDK 653
+EE LSEGIQ LLK+EKLQ+EL +R G PPTFAQWAAAAGVDQKTLR+++NYG+LCKDK
Sbjct: 279 TEEIELSEGIQDLLKLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDK 338
Query: 652 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWWIKQA 473
MIKSN+RLVISIAKNYQGAGMNLQDLVQEGCRGLVRG+EKFDASKGFKFSTYAHWWIKQA
Sbjct: 339 MIKSNVRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 398
Query: 472 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLSMKRLSAVM 293
VRKSLSDQSRTIRLPFHMVEATYRVKEARKQL+SENG+ PNDEEVAEATGLSMKRL+AV+
Sbjct: 399 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVL 458
Query: 292 LTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL-------------- 155
LTPKAPRSL+QKIG+NQ+LKPS++IADP+AET E++L +QFM+QDL
Sbjct: 459 LTPKAPRSLEQKIGINQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQV 518
Query: 154 -----------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMA 23
GELMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+++
Sbjct: 519 IRWRFGMDDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573
>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
[Theobroma cacao]
Length = 623
Score = 532 bits (1371), Expect = e-148
Identities = 323/642 (50%), Positives = 381/642 (59%), Gaps = 77/642 (11%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXS---------------------------- 1622
MSCLLPQFKC PDTF++ F +
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60
Query: 1621 -----RDTINFRTQCILXXXXXXXXXXXXV-LELEKXXXXXXXXXXXXXXXXXXXXLEKA 1460
++ I FRTQC+L L++EK +
Sbjct: 61 VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKL---------------------RL 99
Query: 1459 PSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPNMDETNLLTSEDTVITXXXXXXXXXXXX 1280
PS ++H +RP TY+GA GPPSE LG + NLLTS++ VI
Sbjct: 100 PSFEAHPNSVAVDRPWTYIGATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARA 159
Query: 1279 XXXXXXXXSMMISLHXXXXXXXXXTGVLPEVDTHPVE-TIFREA-KVGEIG--------L 1130
++M + +GV D+ + +F EA + G IG +
Sbjct: 160 AVKVAKDAALMAE-NYNYAKTEMKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEM 218
Query: 1129 SGNFLASDPVAEPDEVEPXXXXXXXXXXXXXXSIAVRSKRQPXXXXXXXXXXXXXXSNIX 950
+ + E DE+EP SIAVRS+RQ +N+
Sbjct: 219 EEDDSEQNSTTESDELEPTNEELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVV 278
Query: 949 XXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSSRLLTASEEQLLSEGIQVLLKMEKLQD 770
+Q++DYSDPLRYLRGTTS+SRLLTA+EE LSEGIQ LLK+E+LQ+
Sbjct: 279 SVKSGSTNRKRRGALQDVDYSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQE 338
Query: 769 ELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGVLCKDKMIKSNIRLVISIAKNYQGAGM 590
EL +R G PTFAQWAAAAGVDQKTLR +LNYGV CKDKMIKSNIRLVISIAKNYQGAGM
Sbjct: 339 ELAERCGGQPTFAQWAAAAGVDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGM 398
Query: 589 NLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 410
NLQDLVQEGCRGLVRG+EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA
Sbjct: 399 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 458
Query: 409 TYRVKEARKQLFSENGKVPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGMNQDLKP 230
TYRVKEARKQL+SENG+ P++EEVAEATGLSMKRL+AV+LTPKAPRSLDQKIG+NQ+LKP
Sbjct: 459 TYRVKEARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKP 518
Query: 229 S--------DVIADPEAETSEELLIKQFMRQDL-------------------------AX 149
S +VIADPEAET+E++LIKQFMR+DL
Sbjct: 519 SVCPVSSLAEVIADPEAETAEDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMK 578
Query: 148 XXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMA 23
GELMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+++
Sbjct: 579 TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLLS 620
>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
lycopersicum]
Length = 613
Score = 527 bits (1358), Expect = e-147
Identities = 312/617 (50%), Positives = 360/617 (58%), Gaps = 52/617 (8%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXV-LE 1541
MS LLPQF PD F + SRD+I+ RTQCIL L
Sbjct: 1 MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDSIHLRTQCILSTTSAVTSTATSTVLG 60
Query: 1540 LEKXXXXXXXXXXXXXXXXXXXXLEKA-------------PSLDSHQIPFVAERPLTYVG 1400
+EK A PS +++ +RP TY G
Sbjct: 61 IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPGIQKLKLPSFEANPDSVAPDRPWTYTG 120
Query: 1399 AVGPPSEIRLGPNMDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXX 1220
AVGPP+E P + L SE+ ++ M++ +
Sbjct: 121 AVGPPAEANTKPE----DSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLKDS 176
Query: 1219 XXXXTGVLPEVDTHPVETIF-------------REAKVGEIGLSGNFLASDPVAEPDEVE 1079
G L E T P E++ E E+ +G+ L D + + D++E
Sbjct: 177 DNVGRGTLSEARTAPFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDLE 236
Query: 1078 PXXXXXXXXXXXXXXSIAVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQE 899
P IAV+S RQ +N+ VQ+
Sbjct: 237 PSHEELEILQSQLSNVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQD 296
Query: 898 IDYSDPLRYLRGTTSSSRLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAA 719
+DYSDPLRYLRGTT SSRLLTASEEQ LS GIQ LLK+E+LQ ELT+R G PTF QWAA
Sbjct: 297 VDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAA 356
Query: 718 AAGVDQKTLRKQLNYGVLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGS 539
AAGVDQ TLRK+LNYG+LCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRG+
Sbjct: 357 AAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGA 416
Query: 538 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGK 359
EKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL +ENG+
Sbjct: 417 EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGR 476
Query: 358 VPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLI 179
PND EVAEATGLSMKRL+AVMLTPKAPRSLDQK+G N+ LKPS+V+ADP+AETSEE+L
Sbjct: 477 HPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILT 536
Query: 178 KQFMRQDL-------------------------AXXXXXXGELMGVSRERIRQIESCAFR 74
KQFMRQDL GELMGVSRERIRQIESCAFR
Sbjct: 537 KQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 596
Query: 73 KLKNKKRTKHLQQYVMA 23
KLKNKKRTK LQQY+ A
Sbjct: 597 KLKNKKRTKFLQQYINA 613
>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
sinensis]
Length = 605
Score = 524 bits (1349), Expect = e-146
Identities = 308/607 (50%), Positives = 369/607 (60%), Gaps = 39/607 (6%)
Frame = -2
Query: 1729 YRRRMSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXS---RDTINFRTQCILXXXXXXXXX 1559
+ + MSCLLPQFKC PDTF+++F ++ I FRT C+L
Sbjct: 20 FNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTST 79
Query: 1558 XXXV-LELEKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPS 1382
L++EK + PSL++H A R TY GAVGP +
Sbjct: 80 AMTTVLDVEKL---------------------RLPSLEAHSNAVAANRQWTYFGAVGPST 118
Query: 1381 EIRLGPNMDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTG 1202
E LG ++ T LTS++ VI ++M++ H
Sbjct: 119 EENLGTSL-ATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMVN-HHNSAKPKSKPA 176
Query: 1201 VLPEVDTHPV----------ETIFREAKVGEIGLSGNFLASDPVAEPDEVEPXXXXXXXX 1052
+ DT+ +I ++ + E + P+ + ++EP
Sbjct: 177 ISLSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLL 236
Query: 1051 XXXXXXSIAVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRY 872
SIAVRS+RQ +N+ VQE+DYSDPLRY
Sbjct: 237 EEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRY 296
Query: 871 LRGTTSSSRLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTL 692
LR TTSSSRLLTA+EE LS GIQ LLK+E L++ L++R G PTFAQWAAAAGVDQ+ L
Sbjct: 297 LRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQREL 356
Query: 691 RKQLNYGVLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGF 512
R++LNYG+LCKDKMI SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG+EKFDASKGF
Sbjct: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
Query: 511 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAE 332
KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL+SENG+ PN+EEVAE
Sbjct: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 476
Query: 331 ATGLSMKRLSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL- 155
ATGLSMKRL AV+LTPKAPRSLDQK G+NQ+LKPS+VIADPEAET+E+LLIK+FM++DL
Sbjct: 477 ATGLSMKRLHAVLLTPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLE 536
Query: 154 ------------------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTK 47
GELMGVSRERIRQIES AFRKLKNKKRTK
Sbjct: 537 KVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 596
Query: 46 HLQQYVM 26
HL QY +
Sbjct: 597 HLMQYAI 603
>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
Length = 613
Score = 524 bits (1349), Expect = e-146
Identities = 312/617 (50%), Positives = 357/617 (57%), Gaps = 52/617 (8%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXV-LE 1541
MS LLPQF PD F + SRD I+ RTQCIL L
Sbjct: 1 MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDHIHLRTQCILSTTSAVTSTATSTVLG 60
Query: 1540 LEKXXXXXXXXXXXXXXXXXXXXLEKA-------------PSLDSHQIPFVAERPLTYVG 1400
+EK A PS +++ +RP TY G
Sbjct: 61 IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPDIQKLKLPSFEANPDSVAPDRPWTYTG 120
Query: 1399 AVGPPSEIRLGPNMDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXX 1220
AVGPP+E P N L SE+ ++ M++ +
Sbjct: 121 AVGPPAEANTKPE----NSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLNDS 176
Query: 1219 XXXXTGVLPEVDTHPVETIF-------------REAKVGEIGLSGNFLASDPVAEPDEVE 1079
G L E T P E++ E E+ +G+ L + + + D++E
Sbjct: 177 DNVGRGTLSEARTAPFESVHLAQPGETRRVGVCAELNGSEMKWTGSSLFRETLTDSDDLE 236
Query: 1078 PXXXXXXXXXXXXXXSIAVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQE 899
P IAV+S RQ +N+ VQ+
Sbjct: 237 PSPEELEILQSQLSNVIAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSRKKRASVQD 296
Query: 898 IDYSDPLRYLRGTTSSSRLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAA 719
+DYSDPLRYLRGTT SSRLLTASEEQ LS GIQ LLK+E+LQ ELT+R G PTF QWAA
Sbjct: 297 VDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAA 356
Query: 718 AAGVDQKTLRKQLNYGVLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGS 539
AAGVDQ TLRK+LNYG+LCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRG+
Sbjct: 357 AAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGA 416
Query: 538 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGK 359
EKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQL +ENG+
Sbjct: 417 EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTENGR 476
Query: 358 VPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLI 179
PND EVAEA GLSMKRL+AVMLTPKAPRSLDQKIG N+ LKPS+V+ADPEAETSEE+L
Sbjct: 477 HPNDAEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEILT 536
Query: 178 KQFMRQDL-------------------------AXXXXXXGELMGVSRERIRQIESCAFR 74
KQFMRQDL GELMGVSRERIRQIESCAFR
Sbjct: 537 KQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 596
Query: 73 KLKNKKRTKHLQQYVMA 23
KLKNKKRTK LQQY+ A
Sbjct: 597 KLKNKKRTKFLQQYINA 613
>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
gi|557539534|gb|ESR50578.1| hypothetical protein
CICLE_v10030998mg [Citrus clementina]
Length = 605
Score = 520 bits (1338), Expect = e-144
Identities = 304/606 (50%), Positives = 367/606 (60%), Gaps = 38/606 (6%)
Frame = -2
Query: 1729 YRRRMSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXS---RDTINFRTQCILXXXXXXXXX 1559
+ + MSCLLPQFKC PDTF+++F ++ I FRT C+L
Sbjct: 20 FNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTST 79
Query: 1558 XXXV-LELEKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPS 1382
L++EK + PSL++H A R TY GAVGP +
Sbjct: 80 AMTTVLDVEKL---------------------RLPSLEAHSNAVAANRQWTYFGAVGPST 118
Query: 1381 EIRLGPNMDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXT- 1205
E LG ++ T LTS++ VI ++M++ H
Sbjct: 119 EENLGTSL-ATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAI 177
Query: 1204 --------GVLPEVDTHPVETIFREAKVGEIGLSGNFLASDPVAEPDEVEPXXXXXXXXX 1049
+ ++ +I ++ + E + P+ + ++EP
Sbjct: 178 SLSADTSTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLE 237
Query: 1048 XXXXXSIAVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYL 869
SIAVRS+RQ +N+ VQE+DYSDPLRYL
Sbjct: 238 EQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYL 297
Query: 868 RGTTSSSRLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLR 689
R TTSSSRLLTA+EE LS GIQ LLK+E L++ L++R G PTFAQWAAAAGVDQ+ LR
Sbjct: 298 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 357
Query: 688 KQLNYGVLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFK 509
++LNYG+LCKDKMI SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG+EKFDASKGFK
Sbjct: 358 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 417
Query: 508 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEA 329
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL+SENG+ PN+EEVA+A
Sbjct: 418 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKA 477
Query: 328 TGLSMKRLSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL-- 155
TGLSMKRL AV+L PKAPRSLDQK G+NQ+LKPS+VIADPEAET+E+LLIK+FM++DL
Sbjct: 478 TGLSMKRLHAVLLAPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEK 537
Query: 154 -----------------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKH 44
GELMGVSRERIRQIES AFRKLKNKKRTKH
Sbjct: 538 VLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKH 597
Query: 43 LQQYVM 26
L QY +
Sbjct: 598 LMQYAI 603
>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
subsp. vesca]
Length = 616
Score = 508 bits (1309), Expect = e-141
Identities = 284/514 (55%), Positives = 336/514 (65%), Gaps = 35/514 (6%)
Frame = -2
Query: 1459 PSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPNMDETNLLTSEDTVITXXXXXXXXXXXX 1280
PSL + + RP TY GA+GPP+E G + LLTSE+ VI
Sbjct: 104 PSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSEEAVIAAAAAEAVTLAKA 163
Query: 1279 XXXXXXXXSMMISLHXXXXXXXXXT----------GVLPEVDTHPVETIFREAKVGEIGL 1130
++++S + ++T P I ++ E L
Sbjct: 164 ALKVAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQHLETEPTLRI-GDSMASETAL 222
Query: 1129 SGNFLASDPVAEPDEVEPXXXXXXXXXXXXXXSIAVRSKRQPXXXXXXXXXXXXXXSNIX 950
+ + E + VEP IA RS RQ ++I
Sbjct: 223 VEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTERKARRTRAAEKAAASIV 282
Query: 949 XXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSSRLLTASEEQLLSEGIQVLLKMEKLQD 770
+Q++D+SDPLRYLR TT +SRLLTA+EE LSEGIQ LLK+EKLQ+
Sbjct: 283 SVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELLKLEKLQE 342
Query: 769 ELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGVLCKDKMIKSNIRLVISIAKNYQGAGM 590
+L QR G+ PTFAQWAAAAGVDQKTLRK++NYG++CKDKMIKSNIRLVISIAKNYQGAGM
Sbjct: 343 DLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSNIRLVISIAKNYQGAGM 402
Query: 589 NLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 410
NLQDLVQEGCRGLVRG+EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA
Sbjct: 403 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 462
Query: 409 TYRVKEARKQLFSENGKVPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGMNQDLKP 230
TYRV+EA+KQL+S NG+ PNDEEVAEATGLSMKRL+AV+LTPKAPRSL+QKIG+NQ+LKP
Sbjct: 463 TYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKP 522
Query: 229 SDVIADPEAETSEELLIKQFMRQDL-------------------------AXXXXXXGEL 125
SDVIADP+AET+E+LL+K+FM+QDL GEL
Sbjct: 523 SDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEL 582
Query: 124 MGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMA 23
MGVSRERIRQIESCAFRKLKNKKRTKHLQQYV++
Sbjct: 583 MGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLS 616
>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
rpoD1, putative [Ricinus communis]
Length = 569
Score = 501 bits (1290), Expect = e-139
Identities = 302/600 (50%), Positives = 353/600 (58%), Gaps = 35/600 (5%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXS---RDTINFRTQCILXXXXXXXXXXXXV 1547
MSCLLPQFKC PDTF+++F S R+ I +R QCIL
Sbjct: 2 MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAV-- 59
Query: 1546 LELEKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIRLG 1367
L+LEK + PS ++ P TY G
Sbjct: 60 LDLEKL---------------------RLPSFEAPSDSIAPNSPWTYA---------TFG 89
Query: 1366 PNMDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGVL--- 1196
+ L+TS++ VI ++++ T
Sbjct: 90 STLATETLITSDEAVIAAAAAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTID 149
Query: 1195 ----PEVDTHPVETIFREAKVGEIGLSGNFLASDPVAEPDEVEPXXXXXXXXXXXXXXSI 1028
P+ I ++ E G + E D +E I
Sbjct: 150 ASRWPQFTETERARIIGDSVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGI 209
Query: 1027 AVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSS 848
AVRS+RQ S++ +QE+DYSDPLRYLRGTTS+S
Sbjct: 210 AVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTS 269
Query: 847 RLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGV 668
RLLTASEE LS IQ LLK+E+LQ+EL +R+G PTFAQWAAAAGVDQ+TLRK++N+G
Sbjct: 270 RLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGT 329
Query: 667 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHW 488
+CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG+EKFDASKGFKFSTYAHW
Sbjct: 330 ICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 389
Query: 487 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLSMKR 308
WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL+SENG+ P+DEEVAEA GLSMKR
Sbjct: 390 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKR 449
Query: 307 LSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL--------- 155
LSAV+LTPKAPRSLDQKIGMN DLKPS+VIADPEAET+EELL+KQFM+QDL
Sbjct: 450 LSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNP 509
Query: 154 ----------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMA 23
GE+MGVSRERIRQIES AFRKLKNKKRTK L+QY++A
Sbjct: 510 RETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569
>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
sinensis]
Length = 525
Score = 498 bits (1283), Expect = e-138
Identities = 284/515 (55%), Positives = 335/515 (65%), Gaps = 35/515 (6%)
Frame = -2
Query: 1465 KAPSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPNMDETNLLTSEDTVITXXXXXXXXXX 1286
+ PSL++H A R TY GAVGP +E LG ++ T LTS++ VI
Sbjct: 11 RLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSL-ATETLTSDEAVIAAASAEAVALA 69
Query: 1285 XXXXXXXXXXSMMISLHXXXXXXXXXTGVLPEVDTHPV----------ETIFREAKVGEI 1136
++M++ H + DT+ +I ++ + E
Sbjct: 70 RAAVKVAKDAALMVN-HHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIGDSVIVEA 128
Query: 1135 GLSGNFLASDPVAEPDEVEPXXXXXXXXXXXXXXSIAVRSKRQPXXXXXXXXXXXXXXSN 956
+ P+ + ++EP SIAVRS+RQ +N
Sbjct: 129 APEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAAN 188
Query: 955 IXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSSRLLTASEEQLLSEGIQVLLKMEKL 776
+ VQE+DYSDPLRYLR TTSSSRLLTA+EE LS GIQ LLK+E L
Sbjct: 189 VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL 248
Query: 775 QDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGVLCKDKMIKSNIRLVISIAKNYQGA 596
++ L++R G PTFAQWAAAAGVDQ+ LR++LNYG+LCKDKMI SNIRLVISIAKNYQGA
Sbjct: 249 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
Query: 595 GMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 416
GMNLQDLVQEGCRGLVRG+EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV
Sbjct: 309 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 368
Query: 415 EATYRVKEARKQLFSENGKVPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGMNQDL 236
EATYRVKEARKQL+SENG+ PN+EEVAEATGLSMKRL AV+LTPKAPRSLDQK G+NQ+L
Sbjct: 369 EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKFGINQNL 428
Query: 235 KPSDVIADPEAETSEELLIKQFMRQDL-------------------------AXXXXXXG 131
KPS+VIADPEAET+E+LLIK+FM++DL G
Sbjct: 429 KPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIG 488
Query: 130 ELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 26
ELMGVSRERIRQIES AFRKLKNKKRTKHL QY +
Sbjct: 489 ELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523
>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 495 bits (1275), Expect = e-137
Identities = 303/615 (49%), Positives = 367/615 (59%), Gaps = 50/615 (8%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXS----------RDTINFRTQCILXXXXXX 1568
MSCLLPQFKC P+TF++ F RD + RTQCIL
Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
Query: 1567 XXXXXXV-LELEKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVG 1391
L++++ K P D++ ER +Y+GAV
Sbjct: 61 TSTGTATTLDVDRL---------------------KLPPFDTNTDSVSVERLRSYLGAV- 98
Query: 1390 PPSEIRLGPNMDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXX 1211
E L + LLTSE+ I +++ +
Sbjct: 99 ---ESSLA-----STLLTSEEASIAAAAAEAVTLAKAAVKVARDAALLAN-----NINSS 145
Query: 1210 XTGVLPEVDTHPVETIFREAK---------VGE-IGLSGNFLASDPV----AEPDEVEPX 1073
G + P F+ A+ +GE +G++ + D + E D++EP
Sbjct: 146 RAGTKSQSSPKPDALHFKWAQFMESERADIIGEPVGVNKRPMEGDALEPSTTESDDMEPT 205
Query: 1072 XXXXXXXXXXXXXSIAVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEID 893
SI V+SKRQ +++ VQE+D
Sbjct: 206 SEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVD 265
Query: 892 YSDPLRYLRGTTSSSRLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAA 713
YSDPLRYLR TT++SRLLTA+EE LSEGIQ LLK+E+LQ+EL +R+G+ PTFAQWAAAA
Sbjct: 266 YSDPLRYLRATTNTSRLLTATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAA 325
Query: 712 GVDQKTLRKQLNYGVLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEK 533
GV+Q+TLRK+LNYG LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG+EK
Sbjct: 326 GVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 385
Query: 532 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVP 353
FDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL ENG+ P
Sbjct: 386 FDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHP 445
Query: 352 NDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQ 173
+D+E+AEA GLSMKRL+AV++TPKAPRSL+QKIG+NQ+LKPS+VI+DPEAET E++LIKQ
Sbjct: 446 DDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQ 505
Query: 172 FMRQDL-------------------------AXXXXXXGELMGVSRERIRQIESCAFRKL 68
FM+QDL GE+MGVSRERIRQIESCAFRKL
Sbjct: 506 FMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKL 565
Query: 67 KNKKRTKHLQQYVMA 23
KNKKRTKHLQQYVM+
Sbjct: 566 KNKKRTKHLQQYVMS 580
>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
[Populus trichocarpa]
Length = 567
Score = 493 bits (1270), Expect = e-136
Identities = 292/602 (48%), Positives = 353/602 (58%), Gaps = 37/602 (6%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXVLEL 1538
MSCLLPQFKC PDTF+V+F QC+L L+L
Sbjct: 1 MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQL-------PQCVLSSASPSTAV----LDL 49
Query: 1537 EKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPNM 1358
EK + PSL+ H A RP TY+G +GP + G ++
Sbjct: 50 EKL---------------------RLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSL 88
Query: 1357 DETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMM------------ISLHXXXXXXX 1214
L+ +++ VI + M I +
Sbjct: 89 AAETLIANDEAVIAAAAAEAVALARAAVKVAKDAAEMAKNYSFMKKETKIPIASTTDSFS 148
Query: 1213 XXTGVLPEVDTHPVETIFREAKVGEIGLSGNFLASDPVAEPDEVEPXXXXXXXXXXXXXX 1034
+L E + I ++ E L + P E D +EP
Sbjct: 149 SMWSLLTEKER---ADIIGDSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSE 205
Query: 1033 SIAVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTS 854
IAVRSKRQ +N+ +QE+D SDPLR+ RG +S
Sbjct: 206 GIAVRSKRQTERKARRARAAEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASS 265
Query: 853 SSRLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNY 674
SSRLL+A+EE LSEGIQ LLK+E++++EL +RFG P+FAQWAAAAGVDQ TLRK+LNY
Sbjct: 266 SSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNY 325
Query: 673 GVLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYA 494
G+LCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRG+EKFDASKGFKFSTYA
Sbjct: 326 GILCKDKMIKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 385
Query: 493 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLSM 314
HWWIKQAVRKSLSD+SRTIRLPFHMV+ATYRVKEARKQL+SENG+ P+D+EVAEA GLSM
Sbjct: 386 HWWIKQAVRKSLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSM 445
Query: 313 KRLSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDLA------ 152
KRLSAV+LTPKAPRSLDQK+G N DLK S+V ADPEAET+E+LL+K+FM++DLA
Sbjct: 446 KRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSL 505
Query: 151 -------------------XXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYV 29
GELMGVSRER+RQIE AFRKLKNK RTK L+QY+
Sbjct: 506 SPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYM 565
Query: 28 MA 23
+A
Sbjct: 566 VA 567
>emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 491 bits (1265), Expect = e-136
Identities = 294/597 (49%), Positives = 352/597 (58%), Gaps = 34/597 (5%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXS----RDTINFRTQCILXXXXXXXXXXXX 1550
M+CLLPQFKC PDTF+++ S RD + FR QC +
Sbjct: 1 MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAET 60
Query: 1549 VL-ELEKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIR 1373
+ ++EK + P ++S+ A T++ +G P+E++
Sbjct: 61 SIFDVEKL---------------------RLPYVESNSNSLSAFAQSTFLSTLGSPAEVK 99
Query: 1372 LGPNMDETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGVLP 1193
+ L+ +E+ VI ++M G
Sbjct: 100 FDTALTAKLLIENEEAVIAAAAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLEGQSL 159
Query: 1192 EVDTHPVETIFREAKVGEI----GLSGNFLASDPVAEPDEVEPXXXXXXXXXXXXXXSIA 1025
+ +VG + G + D V+EP ++EP SI
Sbjct: 160 HFSG---AQLLENEQVGSMRNFEGSENSLREGDTVSEPADMEPTIEELQLLEVELDESIT 216
Query: 1024 VRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSSR 845
VRS RQ SN+ VQE+DYSDPLRYLRG T+SSR
Sbjct: 217 VRSTRQGERKARRARAAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSR 276
Query: 844 LLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGVL 665
LLT+SEE LS GIQ LLK+EKL DEL RFG P+F QWAAAAG+DQ+TLR++LN+G
Sbjct: 277 LLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTF 336
Query: 664 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWW 485
CKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRG+EKFDASKGFKFSTYAHWW
Sbjct: 337 CKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 396
Query: 484 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLSMKRL 305
IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL SENGK PN+EEVAEATGLSMKRL
Sbjct: 397 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRL 456
Query: 304 SAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL---------- 155
+AV++TPKAPRSLDQKIG N +LKPS+VIADPEAET+E+LL KQFMRQDL
Sbjct: 457 TAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSR 516
Query: 154 ---------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYV 29
GELMGVSRERIRQIES AFRKL+NKK+T +LQQY+
Sbjct: 517 EKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYM 573
>ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max]
Length = 564
Score = 481 bits (1239), Expect = e-133
Identities = 288/600 (48%), Positives = 354/600 (59%), Gaps = 35/600 (5%)
Frame = -2
Query: 1717 MSCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXVLEL 1538
MSCLLP F C DTF + +R + F+ QC+L L L
Sbjct: 1 MSCLLPHFNCHLDTFRTH---PYALPTHLSKTRPNLCFQPQCVLSATSPSTL-----LSL 52
Query: 1537 EKXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPNM 1358
EK APS + P++A AV PP + +
Sbjct: 53 EKKLALD------------------APSDPNTSWPYIA--------AVSPPLQANFKSTL 86
Query: 1357 DETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGVLPEVDTH 1178
+LLT+E+ VI ++++ D
Sbjct: 87 SAESLLTNEEAVIVAAASEALALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDL- 145
Query: 1177 PVETIFREAKVGEIGLSGNFLAS----------DPVAEPDEVEPXXXXXXXXXXXXXXSI 1028
+ F++ + E G++ + + P E ++EP SI
Sbjct: 146 -LLKWFKQMEEVEDGVAEESMGAGAEIMEGVDVSPSEEESDLEPSHEELERLQEQLSDSI 204
Query: 1027 AVRSKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSS 848
AVRS+RQ +N +QE+DYSDPLRYLR TTS+S
Sbjct: 205 AVRSRRQTERKAKRVRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSAS 264
Query: 847 RLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGV 668
RLLT +EE LS GIQ LLK+EK+Q++L +RFGS PTFAQWAA AGVDQKTLRK+LNYG+
Sbjct: 265 RLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGI 324
Query: 667 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHW 488
CKDKMIKSNIRLVISIAKNYQG+GMNLQDLVQEGCRGLV+G+EKFD +KGFKFSTYAHW
Sbjct: 325 FCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHW 384
Query: 487 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLSMKR 308
WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL+SENG+ P+DEEVAEATGLSMKR
Sbjct: 385 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKR 444
Query: 307 LSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL--------- 155
L+AV++TPKAPRSL+QKIG+NQ+LKPS+VI+DP+AET+EE L+KQFM++DL
Sbjct: 445 LNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNP 504
Query: 154 ----------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMA 23
GE++GVSRERIRQIES AF+KLKNKKRT HLQQY+++
Sbjct: 505 RERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS 564
>ref|XP_007203880.1| hypothetical protein PRUPE_ppa006657mg [Prunus persica]
gi|462399411|gb|EMJ05079.1| hypothetical protein
PRUPE_ppa006657mg [Prunus persica]
Length = 401
Score = 480 bits (1235), Expect = e-132
Identities = 245/319 (76%), Positives = 275/319 (86%), Gaps = 25/319 (7%)
Frame = -2
Query: 904 QEIDYSDPLRYLRGTTSSSRLLTASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQW 725
Q++D+SDPLRYLR TT +SRLLTA+EE LSEGIQ LLK+EKLQ+EL QR G PT AQW
Sbjct: 83 QDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQPTIAQW 142
Query: 724 AAAAGVDQKTLRKQLNYGVLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 545
AAAAGVDQKTLRK++NYG+LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ+GCRGLVR
Sbjct: 143 AAAAGVDQKTLRKRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQGCRGLVR 202
Query: 544 GSEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSEN 365
G+EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+KQL+S N
Sbjct: 203 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVN 262
Query: 364 GKVPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEEL 185
G+ PNDEEVAEATGLSMKRL+AV+LTPKAPRSL+QKIG+NQ+LKPS+VIADPEAET+E++
Sbjct: 263 GRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEDM 322
Query: 184 LIKQFMRQDL-------------------------AXXXXXXGELMGVSRERIRQIESCA 80
L+K+FM+QDL GELMGVSRERIRQIESCA
Sbjct: 323 LMKKFMKQDLEKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 382
Query: 79 FRKLKNKKRTKHLQQYVMA 23
FRKLKNKKRTKHLQQYV++
Sbjct: 383 FRKLKNKKRTKHLQQYVVS 401
>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
gi|482575837|gb|EOA40024.1| hypothetical protein
CARUB_v10008711mg [Capsella rubella]
Length = 571
Score = 479 bits (1233), Expect = e-132
Identities = 287/596 (48%), Positives = 349/596 (58%), Gaps = 32/596 (5%)
Frame = -2
Query: 1714 SCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXVLELE 1535
SCLLPQFKC PD+F+++F + + F+ QC + V +L
Sbjct: 3 SCLLPQFKCQPDSFSIHFRTSFSVSKQN---KGPVFFQPQCAVTTSPALLTSTLDVAKL- 58
Query: 1534 KXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPNMD 1355
+ PS D+ +++R TY G VGP +E + +
Sbjct: 59 -----------------------RLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALA 95
Query: 1354 ETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGVLPEVDTHP 1175
LLTS++ V+ ++ + + + D
Sbjct: 96 SETLLTSDEAVVAAAAAEAVALARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFT 155
Query: 1174 VETIFREAKVGEIGLSGNFLASDPVAEPD-------EVEPXXXXXXXXXXXXXXSIAVRS 1016
+ R +G + +S + SD P ++ S+AVRS
Sbjct: 156 EKE--RAGILGHLAVSDTGIVSDKSTAPASNKESSADLISEIQEVELVEEQPAASLAVRS 213
Query: 1015 KRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSSRLLT 836
RQ S I QE+D++DPLRYLR TTSSS+LLT
Sbjct: 214 TRQTERKARRAKGLEKSASAIPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLT 273
Query: 835 ASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGVLCKD 656
EE LS GIQ LLK+E+LQ ELT+R G PTF+QWA+AAGVDQK+LRK++NYG CKD
Sbjct: 274 VREEHELSAGIQDLLKLERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKD 333
Query: 655 KMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWWIKQ 476
KMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG+EKFDA+KGFKFSTYAHWWIKQ
Sbjct: 334 KMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQ 393
Query: 475 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLSMKRLSAV 296
AVRKSLSDQSR IRLPFHMVEATYRVKEARKQL++E G+ P +EEVAEATGLSMKRL AV
Sbjct: 394 AVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYTEKGRHPENEEVAEATGLSMKRLMAV 453
Query: 295 MLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL------------- 155
+L+PK PRSLDQKIGMNQ+LKPS+VIADPEAETSE++LIKQFMR+DL
Sbjct: 454 LLSPKPPRSLDQKIGMNQNLKPSEVIADPEAETSEDILIKQFMREDLDKVLDSLGTREKQ 513
Query: 154 ------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMA 23
GELMGVSRER+RQIES AFRKLKNKKR+ HLQQY++A
Sbjct: 514 VIRWRFGMEDGRMKTLQEIGELMGVSRERVRQIESSAFRKLKNKKRSNHLQQYLVA 569
>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 478 bits (1230), Expect = e-132
Identities = 286/597 (47%), Positives = 349/597 (58%), Gaps = 33/597 (5%)
Frame = -2
Query: 1714 SCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXVLELE 1535
SCLLPQFKC PD+F+++F + ++ F+ QC + V +L
Sbjct: 3 SCLLPQFKCPPDSFSIHFRTSFCARKHN---KGSVFFQPQCAVSTSPALLTSMLDVAKL- 58
Query: 1534 KXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPNMD 1355
+ PS D+ +++R TY GP +E + +
Sbjct: 59 -----------------------RLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALA 95
Query: 1354 ETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGVLPEVDTHP 1175
LLTS++ V+ ++ + + + D
Sbjct: 96 SETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFT 155
Query: 1174 VETIFREAKVGEIGLSGNFLASDPVAEP--------DEVEPXXXXXXXXXXXXXXSIAVR 1019
+ R +G + +S N + SD + P D S+AVR
Sbjct: 156 EKE--RAGILGHLAVSDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVR 213
Query: 1018 SKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSSRLL 839
S RQ S I QE+D++DPLRYLR TTSSS+LL
Sbjct: 214 STRQTERKARRAKGLEKTASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLL 273
Query: 838 TASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGVLCK 659
T EE LS GIQ LLK+E+LQ ELT+R G PTFAQWA+AAGVDQK+LRK++++G LCK
Sbjct: 274 TVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCK 333
Query: 658 DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWWIK 479
DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG+EKFDA+KGFKFSTYAHWWIK
Sbjct: 334 DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIK 393
Query: 478 QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLSMKRLSA 299
QAVRKSLSDQSR IRLPFHMVEATYRVKEARKQL+SE GK P +EE+AEATGLSMKRL A
Sbjct: 394 QAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMA 453
Query: 298 VMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL------------ 155
V+L+PK PRSLDQKIGMNQ+LKPS+VIADPEA TSE++LIK+FMRQDL
Sbjct: 454 VLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREK 513
Query: 154 -------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMA 23
GE+MGVSRER+RQIES AFRKLKNKKR+ HLQQY++A
Sbjct: 514 QVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRSNHLQQYLVA 570
>ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA
polymerase sigma factor sigB; Short=Sigma factor B;
Short=Sigma-B; AltName: Full=Protein ABERRANT CHLOROPLAST
1; AltName: Full=RNA polymerase sigma factor sig1;
Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA
polymerase sigma factor sig2; Short=Atsig2; Short=Sigma
factor 2; AltName: Full=RNA polymerase sigma factor sigA;
Short=Sigma factor A; Short=Sigma-A; Flags: Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
[Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis
thaliana] gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis
thaliana] gi|2597831|emb|CAA75584.1| sigma factor
[Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1| plastid
RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis
thaliana] gi|133778838|gb|ABO38759.1| At1g08540
[Arabidopsis thaliana] gi|332190182|gb|AEE28303.1| RNA
polymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 474 bits (1219), Expect = e-131
Identities = 284/597 (47%), Positives = 347/597 (58%), Gaps = 33/597 (5%)
Frame = -2
Query: 1714 SCLLPQFKCSPDTFAVNFXXXXXXXXXXXXSRDTINFRTQCILXXXXXXXXXXXXVLELE 1535
SCLLPQFKC PD+F+++F + ++ F+ QC + V +L
Sbjct: 3 SCLLPQFKCPPDSFSIHFRTSFCAPKHN---KGSVFFQPQCAVSTSPALLTSMLDVAKL- 58
Query: 1534 KXXXXXXXXXXXXXXXXXXXXLEKAPSLDSHQIPFVAERPLTYVGAVGPPSEIRLGPNMD 1355
+ PS D+ +++R TY GP +E + +
Sbjct: 59 -----------------------RLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALA 95
Query: 1354 ETNLLTSEDTVITXXXXXXXXXXXXXXXXXXXXSMMISLHXXXXXXXXXTGVLPEVDTHP 1175
LLTS++ V+ ++ + + + D
Sbjct: 96 SETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLLTSSTADKRSKWDQFT 155
Query: 1174 VETIFREAKVGEIGLSGNFLASDPVAEP--------DEVEPXXXXXXXXXXXXXXSIAVR 1019
+ R +G + +S N + SD + D S+AVR
Sbjct: 156 EKE--RAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVR 213
Query: 1018 SKRQPXXXXXXXXXXXXXXSNIXXXXXXXXXXXXXXXVQEIDYSDPLRYLRGTTSSSRLL 839
S RQ S I QE+D++DPLRYLR TTSSS+LL
Sbjct: 214 STRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLL 273
Query: 838 TASEEQLLSEGIQVLLKMEKLQDELTQRFGSPPTFAQWAAAAGVDQKTLRKQLNYGVLCK 659
T EE LS GIQ LLK+E+LQ ELT+R G PTFAQWA+AAGVDQK+LR+++++G LCK
Sbjct: 274 TVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCK 333
Query: 658 DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGSEKFDASKGFKFSTYAHWWIK 479
DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG+EKFDA+KGFKFSTYAHWWIK
Sbjct: 334 DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIK 393
Query: 478 QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGKVPNDEEVAEATGLSMKRLSA 299
QAVRKSLSDQSR IRLPFHMVEATYRVKEARKQL+SE GK P +EE+AEATGLSMKRL A
Sbjct: 394 QAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMA 453
Query: 298 VMLTPKAPRSLDQKIGMNQDLKPSDVIADPEAETSEELLIKQFMRQDL------------ 155
V+L+PK PRSLDQKIGMNQ+LKPS+VIADPEA TSE++LIK+FMRQDL
Sbjct: 454 VLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREK 513
Query: 154 -------------AXXXXXXGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMA 23
GE+MGVSRER+RQIES AFRKLKNKKR HLQQY++A
Sbjct: 514 QVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570