BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00011129
         (1264 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU32425.1| hypothetical protein MIMGU_mgv1a007390mg [Mimulus...   557   e-156
ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine...   521   e-145
ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601...   517   e-144
ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   495   e-137
ref|XP_007218062.1| hypothetical protein PRUPE_ppa006826mg [Prun...   480   e-133
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   478   e-132
ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Popu...   477   e-132
ref|XP_007009964.1| Pseudouridine synthase family protein isofor...   474   e-131
ref|XP_007009963.1| Pseudouridine synthase family protein isofor...   467   e-129
gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabi...   465   e-128
ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619...   463   e-128
ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citr...   463   e-128
ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutr...   463   e-128
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   462   e-127
gb|EPS61841.1| hypothetical protein M569_12954, partial [Genlise...   459   e-127
ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, part...   458   e-126
ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine...   457   e-126
ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsi...   455   e-125
ref|XP_007143753.1| hypothetical protein PHAVU_007G098900g [Phas...   451   e-124
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              448   e-123

>gb|EYU32425.1| hypothetical protein MIMGU_mgv1a007390mg [Mimulus guttatus]
          Length = 409

 Score =  557 bits (1436), Expect = e-156
 Identities = 281/389 (72%), Positives = 320/389 (82%), Gaps = 7/389 (1%)
 Frame = +2

Query: 89   FSTLNLSKTSFVLPRRHLRAVITSSLSSAST----EFNIKFAPPKPKPQLQKTSDSASKD 256
            F+TL+LSKTSF+LPRRH R VITSSLS+ +T    EF I FAPPKPKPQLQK+  + +  
Sbjct: 11   FTTLHLSKTSFILPRRHFRTVITSSLSTTTTTAAAEFKITFAPPKPKPQLQKSDPTNAPG 70

Query: 257  SERGGEHYIPWIVKDESGSLTMKKTPPELYLRAMEQENTQ---XXXXXXXXXXXXXXXXX 427
             + G +  +PWI++DE+G+++++K PP+ +L+AM  E+TQ                    
Sbjct: 71   IDSGDQLLVPWILRDENGNISLQKMPPQRFLKAMANESTQKKKKRDDKTPAKKAKAAMQY 130

Query: 428  XXXXXXXXXRRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQT 607
                     RRFYNERFREPPQRLAKVLA AGVASRRSSEELIFQGKVTVNG+VC TPQT
Sbjct: 131  VEPKYSKAARRFYNERFREPPQRLAKVLATAGVASRRSSEELIFQGKVTVNGSVCNTPQT 190

Query: 608  RVDPGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKR 787
            RVDP +D+IYVNGSRLAKKLPPKVYLALNKPKGYICSAGE+ETKS  SLFDDFMK W+KR
Sbjct: 191  RVDPARDIIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEEETKSVFSLFDDFMKGWDKR 250

Query: 788  NPGVPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLI 967
            NPG+PKPRLFTVGRLDV TTGLIIVTNDGEFANKVSHPSSNLSKEYIATI+G V+KR L+
Sbjct: 251  NPGIPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVTKRNLL 310

Query: 968  SISEGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKR 1147
            +ISEGT V+GV C+PD VELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIH+LKR
Sbjct: 311  TISEGTFVEGVKCVPDSVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKR 370

Query: 1148 VRIGGFRLPSDLGLGKYAELNGASLRALG 1234
            +RIGGFRLPSDL LGK+ EL  A +RALG
Sbjct: 371  IRIGGFRLPSDLALGKHIELTPAHMRALG 399


>ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Solanum lycopersicum]
          Length = 414

 Score =  521 bits (1341), Expect = e-145
 Identities = 269/401 (67%), Positives = 314/401 (78%), Gaps = 16/401 (3%)
 Frame = +2

Query: 89   FSTLNLSKTSFVLPRRHLRAVITSSLSSASTEFNIKFAPPKPKPQ---------LQKTSD 241
            F++L+L++ +    RRH+R  ITSSLSS+ST+FNI FAPPKPKP+         +   SD
Sbjct: 15   FTSLHLTRAT-PYTRRHIRTFITSSLSSSSTKFNITFAPPKPKPKTKPEPAIPIINPNSD 73

Query: 242  SASK-----DSERGGEHYIPWIVKDESGSLTMKKTPPELYLRAMEQENT--QXXXXXXXX 400
            S S      D+E G + YIPWIV+DE G+LT++ TPP   L  M   +T  +        
Sbjct: 74   SNSDSVPNLDAEVGDQLYIPWIVRDEKGNLTLQSTPPARLLHEMANASTGKKKKKGKEVA 133

Query: 401  XXXXXXXXXXXXXXXXXXRRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVN 580
                              RRFYNE FR+PPQRL+KVLAAAGVASRRSSEELIFQG+VTVN
Sbjct: 134  SKAATVVPTPEPKHSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVN 193

Query: 581  GAVCKTPQTRVDPGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFD 760
            G+VCKTPQT+VDP +D+IYVNG+RL KKLP KVYLALNKPKGYICS+GEKETKS +SLFD
Sbjct: 194  GSVCKTPQTKVDPARDVIYVNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFD 253

Query: 761  DFMKSWNKRNPGVPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATIS 940
            DF+KSW+KR+PG PKPRLFTVGRLDV TTGLIIVTNDGEF +++SHPSSNLSKEYIATI 
Sbjct: 254  DFIKSWDKRHPGQPKPRLFTVGRLDVATTGLIIVTNDGEFTHQISHPSSNLSKEYIATID 313

Query: 941  GVVSKRQLISISEGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNA 1120
            G V KR LI+ISEGTI+DGVHC PD VELLP QPD+SRPRLRIVVHEGRNHEVRELVKNA
Sbjct: 314  GEVHKRHLIAISEGTIIDGVHCTPDNVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNA 373

Query: 1121 GLQIHSLKRVRIGGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            GLQ+ +LKR+RIGGFRLP+DL LGK+ ELN A+L+ALGWKS
Sbjct: 374  GLQLRALKRIRIGGFRLPADLALGKHVELNQANLKALGWKS 414


>ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601559 [Solanum tuberosum]
          Length = 413

 Score =  517 bits (1332), Expect = e-144
 Identities = 266/400 (66%), Positives = 313/400 (78%), Gaps = 15/400 (3%)
 Frame = +2

Query: 89   FSTLNLSKTSFVLPRRHLRAVITSSLSSASTEFNIKFAPPKPKPQ--------LQKTSDS 244
            F++ +L++ +    R H+R  ITSSLSS+ST+FNI FAPPKPKP+        +   SDS
Sbjct: 15   FTSFHLTRAT-PYTRLHIRTFITSSLSSSSTKFNITFAPPKPKPKPKPEPAIPINSDSDS 73

Query: 245  ASK-----DSERGGEHYIPWIVKDESGSLTMKKTPPELYLRAMEQENT--QXXXXXXXXX 403
             S      ++E G + YIPWIV+DE G+LT++ TPP   L  M   +T  +         
Sbjct: 74   DSNSVPNLEAEIGDQLYIPWIVRDEKGNLTLQSTPPARLLHEMANASTSKKKKKGKEVAS 133

Query: 404  XXXXXXXXXXXXXXXXXRRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNG 583
                             RRFYNE FR+PPQRL+KVLAAAGVASRRSSEELIFQG+VTVNG
Sbjct: 134  KAATVVPTPEPKHSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNG 193

Query: 584  AVCKTPQTRVDPGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDD 763
            +VCKTPQT+VDP +D+IYVNG+RL KKLP KVYLALNKPKGYICS+GEKETKS +SLFDD
Sbjct: 194  SVCKTPQTKVDPARDVIYVNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDD 253

Query: 764  FMKSWNKRNPGVPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISG 943
            F+KSW+KR+PG PKPRLFTVGRLDV TTGLIIVTNDGEF +++SHPSSNLSKEYIATI G
Sbjct: 254  FIKSWDKRHPGQPKPRLFTVGRLDVATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDG 313

Query: 944  VVSKRQLISISEGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAG 1123
             V KR LI+ISEGT++DGVHCIPD VELLP QPD+SRPRLRIVVHEGRNHEVRELVKNAG
Sbjct: 314  EVHKRHLIAISEGTVIDGVHCIPDNVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAG 373

Query: 1124 LQIHSLKRVRIGGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            LQ+ +LKR+RIGGFRLP+DL LGK+ ELN A+L+ALGWKS
Sbjct: 374  LQLRALKRIRIGGFRLPADLALGKHVELNQANLKALGWKS 413


>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  495 bits (1274), Expect = e-137
 Identities = 256/391 (65%), Positives = 299/391 (76%), Gaps = 6/391 (1%)
 Frame = +2

Query: 89   FSTLNLSKTSFVLPRRHLRAV-ITSSLSSAST---EFNIKFAPPK--PKPQLQKTSDSAS 250
            FS+ +LS+ S  L RRH R + + SS+S  ST   EFNI FAP    PKPQ +       
Sbjct: 19   FSSFHLSRPS--LARRHFRTIPVRSSISPPSTTSAEFNISFAPKSKNPKPQSETL----- 71

Query: 251  KDSERGGEHYIPWIVKDESGSLTMKKTPPELYLRAMEQENTQXXXXXXXXXXXXXXXXXX 430
                      IPWIV+DE+G+L ++ TPPE YL+ M +                      
Sbjct: 72   ---------LIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTARAVAV 122

Query: 431  XXXXXXXXRRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTR 610
                    RRFYNE FR+PPQRL+KVLAAAGVASRR+SEELIF+G+VTVNG+VC TPQTR
Sbjct: 123  EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTR 182

Query: 611  VDPGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRN 790
            VDP +DMIYVNG+RL KKLPPKVYLALNKPKGYICS+GEKE+KS L LFDD++KSWNK+N
Sbjct: 183  VDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQN 242

Query: 791  PGVPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLIS 970
            PGVPKPR+FTVGRLDV TTGLII+TNDG+FA K+SHPSS LSKEYIATI GVV+KR LI+
Sbjct: 243  PGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIA 302

Query: 971  ISEGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRV 1150
            ISEGT+++GVHC PD VELLP QP+IS+PRLR+VVHEGRNHEVRELVK+AGLQIHSLKR+
Sbjct: 303  ISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRI 362

Query: 1151 RIGGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            RIGGFRLPSDLG GK+ EL    L+ALGWKS
Sbjct: 363  RIGGFRLPSDLGHGKHVELKQGDLKALGWKS 393


>ref|XP_007218062.1| hypothetical protein PRUPE_ppa006826mg [Prunus persica]
            gi|462414524|gb|EMJ19261.1| hypothetical protein
            PRUPE_ppa006826mg [Prunus persica]
          Length = 393

 Score =  480 bits (1235), Expect = e-133
 Identities = 248/374 (66%), Positives = 293/374 (78%), Gaps = 1/374 (0%)
 Frame = +2

Query: 125  LPRRHLRAVITSSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSER-GGEHYIPWIVKD 301
            LPR  +   +++S SS+S EFNI FAP KPKP+L+   DSA  D E   G+  IPWIV+ 
Sbjct: 30   LPR--ITCSLSTSSSSSSLEFNITFAPSKPKPKLKP--DSAEPDPEALAGQLIIPWIVRG 85

Query: 302  ESGSLTMKKTPPELYLRAMEQENTQXXXXXXXXXXXXXXXXXXXXXXXXXXRRFYNERFR 481
            E G+L ++  PP  +L+A+E ++                            RRFYNE FR
Sbjct: 86   EDGNLKLQSHPPARFLQAIETKSKTKKKKEGAEKRVPTAEPKYSKAA----RRFYNENFR 141

Query: 482  EPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRVDPGQDMIYVNGSRLAK 661
            +  QRL+KVLAAAGVASRRSSE+LIF GKVTVNG+VC TPQ+RVDPG+D+IYVNG+RL K
Sbjct: 142  DASQRLSKVLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQSRVDPGRDIIYVNGNRLPK 201

Query: 662  KLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRNPGVPKPRLFTVGRLDVN 841
            +LPPKVYLALNKPKGYIC++GE   KS LSLF+D++K+W+KRN G+P+PRLFTVGRLDV 
Sbjct: 202  RLPPKVYLALNKPKGYICASGEN--KSVLSLFEDYLKTWDKRNSGIPRPRLFTVGRLDVA 259

Query: 842  TTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLISISEGTIVDGVHCIPDLV 1021
            TTGLIIVTNDG+FA K+SHPSSNLSKEYIA I GVVSKR L++ISEGT+++GVHC PD V
Sbjct: 260  TTGLIIVTNDGDFAQKISHPSSNLSKEYIAAIEGVVSKRHLLAISEGTVIEGVHCTPDSV 319

Query: 1022 ELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRIGGFRLPSDLGLGKYA 1201
            ELLPQQPD+SRPRLRIVVHEGRNHEVRELVKNAGL+IHSLKRVRIGGFRLPSDLGLGK+ 
Sbjct: 320  ELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHM 379

Query: 1202 ELNGASLRALGWKS 1243
             L    L ALGWKS
Sbjct: 380  ALKQGDLSALGWKS 393


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  478 bits (1229), Expect = e-132
 Identities = 241/362 (66%), Positives = 281/362 (77%)
 Frame = +2

Query: 158  SSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSERGGEHYIPWIVKDESGSLTMKKTPP 337
            SS SS+S EFNI FAPPKPKP+ +        D   GG+ +IPWIV+ E G+L ++  PP
Sbjct: 41   SSSSSSSLEFNITFAPPKPKPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPP 100

Query: 338  ELYLRAMEQENTQXXXXXXXXXXXXXXXXXXXXXXXXXXRRFYNERFREPPQRLAKVLAA 517
              +L ++ ++ T+                          RRFYNE  RE  QRL+KVLAA
Sbjct: 101  TRFLHSVSEDETKPKKKKVSAGKPITEPPKHSKAA----RRFYNENIRESSQRLSKVLAA 156

Query: 518  AGVASRRSSEELIFQGKVTVNGAVCKTPQTRVDPGQDMIYVNGSRLAKKLPPKVYLALNK 697
            AGVASRRSSEELIF G+VTVNG+VC TPQTRVDP +D+IYVNG+RL KKLPPKVYLALNK
Sbjct: 157  AGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNK 216

Query: 698  PKGYICSAGEKETKSALSLFDDFMKSWNKRNPGVPKPRLFTVGRLDVNTTGLIIVTNDGE 877
            PKGYICS+G+KE+KS +SLFDD++KSW+K  PG PKPRLFTVGRLDV TTGLIIVTNDG+
Sbjct: 217  PKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGD 276

Query: 878  FANKVSHPSSNLSKEYIATISGVVSKRQLISISEGTIVDGVHCIPDLVELLPQQPDISRP 1057
            FA  +SHPSS LSKEYIA I G VSK+ LI+ISEGTI+DGVHC PD VELLP+QPDIS+ 
Sbjct: 277  FAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKS 336

Query: 1058 RLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRIGGFRLPSDLGLGKYAELNGASLRALGW 1237
            RLRIVVHEGRNHEVRELVK AGL+I+SLKRVRIGGFRLPSDLGLG Y EL  + L+A+GW
Sbjct: 337  RLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGW 396

Query: 1238 KS 1243
            KS
Sbjct: 397  KS 398


>ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Populus trichocarpa]
            gi|550332354|gb|EEE89362.2| hypothetical protein
            POPTR_0008s03540g [Populus trichocarpa]
          Length = 397

 Score =  477 bits (1227), Expect = e-132
 Identities = 241/363 (66%), Positives = 281/363 (77%), Gaps = 6/363 (1%)
 Frame = +2

Query: 170  SASTEFNIKFAPPKPKPQLQKT--SDSASKDSERGGEHYIPWIVKDESGSLTMKKTPPEL 343
            +AS EFNI FAPPKPKP+L     +D+AS  S   G+ +IPWIV+ E G+L ++  PP  
Sbjct: 35   TASLEFNITFAPPKPKPKLPANLQTDAASL-SLPPGQLFIPWIVRGEDGNLKLQSNPPAR 93

Query: 344  YLRAMEQENTQXXXXXXXXXXXXXXXXXXXXXXXXXX----RRFYNERFREPPQRLAKVL 511
             + A+    TQ                              RRFYNE FR+  QRL+KVL
Sbjct: 94   LIHAIADAKTQPKKKKDKVKKESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLSKVL 153

Query: 512  AAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRVDPGQDMIYVNGSRLAKKLPPKVYLAL 691
            AAAGVASRRSSE LIF+GKVTVNG+VC TPQTRVDPG+D IYVNG+RL KKLPPK+Y+AL
Sbjct: 154  AAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDAIYVNGNRLPKKLPPKIYIAL 213

Query: 692  NKPKGYICSAGEKETKSALSLFDDFMKSWNKRNPGVPKPRLFTVGRLDVNTTGLIIVTND 871
            NKPKGYICS GEKE+KS + L DD+ +SW+KRNPG+PKPRLFTVGRLDV TTGLIIVTND
Sbjct: 214  NKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIVTND 273

Query: 872  GEFANKVSHPSSNLSKEYIATISGVVSKRQLISISEGTIVDGVHCIPDLVELLPQQPDIS 1051
            G+FA +++HPSSNLSKEYIAT+ GVVSKR L ++SEGT+++GV C+PD VELLPQQPD  
Sbjct: 274  GDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQPDRP 333

Query: 1052 RPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRIGGFRLPSDLGLGKYAELNGASLRAL 1231
            RPRLRIVVHEGRNHEVRELVKNAGL+IHSLKRVRIGGFRLPSDLGLGK+AEL    L+ L
Sbjct: 334  RPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDLKTL 393

Query: 1232 GWK 1240
            GWK
Sbjct: 394  GWK 396


>ref|XP_007009964.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao] gi|508726877|gb|EOY18774.1| Pseudouridine synthase
            family protein isoform 2, partial [Theobroma cacao]
          Length = 398

 Score =  474 bits (1219), Expect = e-131
 Identities = 249/397 (62%), Positives = 287/397 (72%), Gaps = 16/397 (4%)
 Frame = +2

Query: 101  NLSKTSFVLPRRHLRAVITSSLSSASTEFNIKFAPPKPK------PQLQKT---SDSASK 253
            +LS   F+ P R L  + +SS    S +FNI FAPP PK      P L+      DS S 
Sbjct: 6    SLSLPPFLRPIRALPPITSSS----SLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESP 61

Query: 254  DSERGGEHYIPWIVKDESGSLTMKKTPPELYLRAMEQENTQXXXXXXXXXXXXXXXXXXX 433
                 G+ +IPWIV+ E G+L ++  PP   + A+    TQ                   
Sbjct: 62   PLPSNGQLFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAV 121

Query: 434  XXXXXXX-------RRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVC 592
                          RRFYNE F EPPQRL+KVLAAAGVASRR SEELIF GKVTVNG+VC
Sbjct: 122  GNASVEPPKLSKAARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVC 181

Query: 593  KTPQTRVDPGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMK 772
              PQTRVDP +D+IYVNGSRL KKLPPK+YLALNKPKGYICS+GEKE KS L LF+D++K
Sbjct: 182  NAPQTRVDPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLK 241

Query: 773  SWNKRNPGVPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVS 952
             W+K N G PKPRLFTVGRLDV TTGLIIVTNDG+FA K+SHPSSNL+KEYIATI G V 
Sbjct: 242  RWDKMNRGSPKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVK 301

Query: 953  KRQLISISEGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQI 1132
            KR LI+ISEGT ++G+HCIPD VELLP+QPD+SRPRLRIVVHEGRNHEVRELVKNAGL+I
Sbjct: 302  KRHLIAISEGTEIEGIHCIPDSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEI 361

Query: 1133 HSLKRVRIGGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            HSLKRVRIGGFRLP+DLGLGK+ EL  + LRA+GWKS
Sbjct: 362  HSLKRVRIGGFRLPADLGLGKHVELKQSDLRAMGWKS 398


>ref|XP_007009963.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508726876|gb|EOY18773.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 453

 Score =  467 bits (1202), Expect = e-129
 Identities = 249/403 (61%), Positives = 287/403 (71%), Gaps = 22/403 (5%)
 Frame = +2

Query: 101  NLSKTSFVLPRRHLRAVITSSLSSASTEFNIKFAPPKPK------PQLQKT---SDSASK 253
            +LS   F+ P R L  + +SS    S +FNI FAPP PK      P L+      DS S 
Sbjct: 55   SLSLPPFLRPIRALPPITSSS----SLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESP 110

Query: 254  DSERGGEHYIPWIVKDESGSLTMKKTPPELYLRAMEQENTQXXXXXXXXXXXXXXXXXXX 433
                 G+ +IPWIV+ E G+L ++  PP   + A+    TQ                   
Sbjct: 111  PLPSNGQLFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAV 170

Query: 434  XXXXXXX-------RRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVC 592
                          RRFYNE F EPPQRL+KVLAAAGVASRR SEELIF GKVTVNG+VC
Sbjct: 171  GNASVEPPKLSKAARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVC 230

Query: 593  KTPQ------TRVDPGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSL 754
              PQ      TRVDP +D+IYVNGSRL KKLPPK+YLALNKPKGYICS+GEKE KS L L
Sbjct: 231  NAPQASDNLQTRVDPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDL 290

Query: 755  FDDFMKSWNKRNPGVPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIAT 934
            F+D++K W+K N G PKPRLFTVGRLDV TTGLIIVTNDG+FA K+SHPSSNL+KEYIAT
Sbjct: 291  FEDYLKRWDKMNRGSPKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIAT 350

Query: 935  ISGVVSKRQLISISEGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVK 1114
            I G V KR LI+ISEGT ++G+HCIPD VELLP+QPD+SRPRLRIVVHEGRNHEVRELVK
Sbjct: 351  IDGEVKKRHLIAISEGTEIEGIHCIPDSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVK 410

Query: 1115 NAGLQIHSLKRVRIGGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            NAGL+IHSLKRVRIGGFRLP+DLGLGK+ EL  + LRA+GWKS
Sbjct: 411  NAGLEIHSLKRVRIGGFRLPADLGLGKHVELKQSDLRAMGWKS 453


>gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabilis]
          Length = 404

 Score =  465 bits (1197), Expect = e-128
 Identities = 240/390 (61%), Positives = 288/390 (73%), Gaps = 6/390 (1%)
 Frame = +2

Query: 92   STLNLSKTSFVLPRRHLRAVITSSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSERGG 271
            S L+LS  S     RH+   +  SLSS+++EFNI FAP KPKPQ + T   +   ++ G 
Sbjct: 18   SLLSLSSLSLRPSIRHILPRVLCSLSSSTSEFNISFAPAKPKPQPEATEVDSLFGAD-GS 76

Query: 272  EHYIPWIVKDESGSLTMKKTPPELYLRAMEQENTQXXXXXXXXXXXXXXXXXXXXXXXXX 451
            + +IPWI++ + G+L ++  PP   L AM   +T+                         
Sbjct: 77   QLFIPWIIRGDDGNLKLQSHPPARLLHAMAHADTKNSKKKKPTAAEKKKKNDKADKSVAE 136

Query: 452  X------RRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRV 613
                   RRFYNE FRE  QRL+KVLAAAGVASRR+SEELI +G+VTVNG+VC TPQTRV
Sbjct: 137  PKYSKAARRFYNENFRESDQRLSKVLAAAGVASRRNSEELILEGRVTVNGSVCNTPQTRV 196

Query: 614  DPGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRNP 793
            DP +D+IYVNG+RL K+LPPKVYLALNKPKGYICS G+K  KS +SLFDD++K W+KRN 
Sbjct: 197  DPAKDVIYVNGNRLPKRLPPKVYLALNKPKGYICSVGDK--KSVMSLFDDYLKIWDKRNL 254

Query: 794  GVPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLISI 973
            G  KPRLFTVGRLDV TTGLIIVTNDG+FA K+SHPSSNLSKEYIATI G VSK+ L+ I
Sbjct: 255  GQSKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATIEGTVSKKHLLVI 314

Query: 974  SEGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVR 1153
            SEGT +DGVHC+PD VELLP QP++ RPRLR+VVH+GR HEVREL+KNAGL+IHSLKRVR
Sbjct: 315  SEGTFIDGVHCVPDSVELLPNQPEMPRPRLRVVVHDGRKHEVRELMKNAGLEIHSLKRVR 374

Query: 1154 IGGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            IGG+RLPSDLGLGK+ EL    L ALGWKS
Sbjct: 375  IGGYRLPSDLGLGKHVELKQGDLSALGWKS 404


>ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619728 [Citrus sinensis]
          Length = 401

 Score =  463 bits (1192), Expect = e-128
 Identities = 237/383 (61%), Positives = 282/383 (73%), Gaps = 7/383 (1%)
 Frame = +2

Query: 116  SFVLPRRHLRAVITSSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSERGGEHYIPWIV 295
            S  + R   R+ IT S  S+S +FNI FAPPK K   Q   +S     +   + +IPWIV
Sbjct: 24   SLCIHRTFPRSRITCS--SSSLQFNISFAPPKRKKTQQDDFESGEGSEQ---QLFIPWIV 78

Query: 296  KDESGSLTMKKTPPELYLRAMEQENTQXXXXXXXXXXXXXXXXXXXXXXXXXX------- 454
            + E G+L ++  PP   +  +    TQ                                 
Sbjct: 79   RGEDGNLKLQTHPPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAAPKLSKAA 138

Query: 455  RRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRVDPGQDMI 634
            RRFYN+ FR+ P+RL+KVLAAAGVASRRSSEELIFQG+VTVNG+VC TPQTRVDP +D+I
Sbjct: 139  RRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDPARDII 198

Query: 635  YVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRNPGVPKPRL 814
            YVNG RL KKLPPKVYLALNKPKGYICSAGEKE KS +SLFDD++KSW+KRNPG+P+PRL
Sbjct: 199  YVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGLPRPRL 258

Query: 815  FTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLISISEGTIVD 994
            FTVGRLDV TTGLIIVTNDG+FA  VSHPSS L KEYIATI G V+KR LI+ISEGT+++
Sbjct: 259  FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 318

Query: 995  GVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRIGGFRLP 1174
            G HC PD+VELLP QPDI RPR+RIVVHEGRNHEVRELVKNAGL+++SLKR+RIGGFRLP
Sbjct: 319  GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLP 378

Query: 1175 SDLGLGKYAELNGASLRALGWKS 1243
            SDLG+G + EL  + L+ +GWKS
Sbjct: 379  SDLGIGMHVELKQSDLKLMGWKS 401


>ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citrus clementina]
            gi|557538690|gb|ESR49734.1| hypothetical protein
            CICLE_v10031516mg [Citrus clementina]
          Length = 451

 Score =  463 bits (1192), Expect = e-128
 Identities = 237/383 (61%), Positives = 282/383 (73%), Gaps = 7/383 (1%)
 Frame = +2

Query: 116  SFVLPRRHLRAVITSSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSERGGEHYIPWIV 295
            S  + R   R+ IT S  S+S +FNI FAPPK K   Q   +S     +   + +IPWIV
Sbjct: 74   SLCIHRTFPRSRITCS--SSSLQFNISFAPPKRKKTQQDDFESGEGSEQ---QLFIPWIV 128

Query: 296  KDESGSLTMKKTPPELYLRAMEQENTQXXXXXXXXXXXXXXXXXXXXXXXXXX------- 454
            + E G+L ++  PP   +  +    TQ                                 
Sbjct: 129  RGEDGNLKLQTHPPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAAPKLSKAA 188

Query: 455  RRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRVDPGQDMI 634
            RRFYN+ FR+ P+RL+KVLAAAGVASRRSSEELIFQG+VTVNG+VC TPQTRVDP +D+I
Sbjct: 189  RRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDPARDII 248

Query: 635  YVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRNPGVPKPRL 814
            YVNG RL KKLPPKVYLALNKPKGYICSAGEKE KS +SLFDD++KSW+KRNPG+P+PRL
Sbjct: 249  YVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGLPRPRL 308

Query: 815  FTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLISISEGTIVD 994
            FTVGRLDV TTGLIIVTNDG+FA  VSHPSS L KEYIATI G V+KR LI+ISEGT+++
Sbjct: 309  FTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIE 368

Query: 995  GVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRIGGFRLP 1174
            G HC PD+VELLP QPDI RPR+RIVVHEGRNHEVRELVKNAGL+++SLKR+RIGGFRLP
Sbjct: 369  GTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLP 428

Query: 1175 SDLGLGKYAELNGASLRALGWKS 1243
            SDLG+G + EL  + L+ +GWKS
Sbjct: 429  SDLGIGMHVELKQSDLKLMGWKS 451


>ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutrema salsugineum]
            gi|557112308|gb|ESQ52592.1| hypothetical protein
            EUTSA_v10016747mg [Eutrema salsugineum]
          Length = 403

 Score =  463 bits (1192), Expect = e-128
 Identities = 238/386 (61%), Positives = 280/386 (72%), Gaps = 14/386 (3%)
 Frame = +2

Query: 128  PRRHLRAVITSSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSERGG----EHYIPWIV 295
            P R LR  ++SS SS   EF+I FAPPKP P            S RGG    + +IPWIV
Sbjct: 29   PIRTLRCSLSSSSSSEPLEFDITFAPPKPTPS-----------STRGGAGVQQLFIPWIV 77

Query: 296  KDESGSLTMKKTPPELYLRAMEQENTQXXXXXXXXXXXXXXXXXXXXXXXXXX------- 454
            + E G L ++  PP   + A+    TQ                                 
Sbjct: 78   RGEDGKLKVQSQPPARLIHALADATTQNPKKKDKSKKKKPQSTSASTPSSPASHSKPKLS 137

Query: 455  ---RRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRVDPGQ 625
               RRFYNE F++PPQRL+KVLAAAGVASRR+SEELIF GKVTVNG++C  PQ RVDP +
Sbjct: 138  KAARRFYNENFKDPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGSLCTAPQIRVDPTR 197

Query: 626  DMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRNPGVPK 805
            D+IYVNG+R+ KKLPPKVY ALNKPKGYICS+GEKE KS +SLFDDF+ SW+KRNPG PK
Sbjct: 198  DIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFDDFLASWDKRNPGTPK 257

Query: 806  PRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLISISEGT 985
            PRLFTVGRLDV TTGLI+VTNDG+FA K+SHPSS+L KEYI T+ G V KR L++ISEGT
Sbjct: 258  PRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDVHKRHLMTISEGT 317

Query: 986  IVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRIGGF 1165
            IV+GVHC+PD VEL+P+Q DI R RLRIVVHEGRNHEVRE+VKNAGL++HSLKRVRIGGF
Sbjct: 318  IVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVREIVKNAGLEVHSLKRVRIGGF 377

Query: 1166 RLPSDLGLGKYAELNGASLRALGWKS 1243
            RLPSDLGLGK+ EL  + L+A+GWKS
Sbjct: 378  RLPSDLGLGKHVELKQSELKAMGWKS 403


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  462 bits (1189), Expect = e-127
 Identities = 236/394 (59%), Positives = 283/394 (71%), Gaps = 22/394 (5%)
 Frame = +2

Query: 128  PRRHLRAVITSSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSERGG----EHYIPWIV 295
            P R LR  ++SS SS   EF+I FAPPKPKP            S RGG    + +IPWIV
Sbjct: 30   PIRTLRCSVSSSSSSEPIEFDISFAPPKPKPS-----------STRGGATPQQLFIPWIV 78

Query: 296  KDESGSLTMKKTPPELYLRAM------------------EQENTQXXXXXXXXXXXXXXX 421
            + + G+L ++  PP   +  +                  + + T                
Sbjct: 79   RGDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASATASASSPASH 138

Query: 422  XXXXXXXXXXXRRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTP 601
                       RRFYNE F+EPPQRL+KVLAAAGVASRR+SEELIF GKVTVNG +C TP
Sbjct: 139  SEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTP 198

Query: 602  QTRVDPGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWN 781
            QTRVDP +D+IYVNG+R+ KKLPPKVY ALNKPKGYICS+GEKE KS +SLFD+++ SW+
Sbjct: 199  QTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFDEYLSSWD 258

Query: 782  KRNPGVPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQ 961
            KRNPG PKPRLFTVGRLDV TTGLI+VTNDG+FA K+SHPSS+L KEYI T+ G + KR 
Sbjct: 259  KRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRH 318

Query: 962  LISISEGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSL 1141
            L++ISEGTIV+GVHC+PD VEL+P+Q DI R RLRIVVHEGRNHEVRELVKNAGL++HSL
Sbjct: 319  LMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSL 378

Query: 1142 KRVRIGGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            KRVRIGGFRLPSDLGLGK+ EL  + L+A+GWK+
Sbjct: 379  KRVRIGGFRLPSDLGLGKHVELKQSELKAMGWKN 412


>gb|EPS61841.1| hypothetical protein M569_12954, partial [Genlisea aurea]
          Length = 273

 Score =  459 bits (1182), Expect = e-127
 Identities = 222/262 (84%), Positives = 244/262 (93%)
 Frame = +2

Query: 455  RRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRVDPGQDMI 634
            RRFYNERFREPPQRLAKVLA+AGVASRRS EELIFQGKV+VNG+VCKTPQTRVDPGQD+I
Sbjct: 9    RRFYNERFREPPQRLAKVLASAGVASRRSCEELIFQGKVSVNGSVCKTPQTRVDPGQDVI 68

Query: 635  YVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRNPGVPKPRL 814
            YVNG RLAKKLPPKVYLALNKPKGYICS GEKETKS +SL DDF KSW +RNPGVP+PRL
Sbjct: 69   YVNGCRLAKKLPPKVYLALNKPKGYICSVGEKETKSVISLLDDFTKSWRRRNPGVPQPRL 128

Query: 815  FTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLISISEGTIVD 994
            FTVGRLDV T+GLIIVTNDGEFANK+SHPSSNLSKEYIATI+G VSK+ L++IS+GT +D
Sbjct: 129  FTVGRLDVATSGLIIVTNDGEFANKISHPSSNLSKEYIATINGTVSKQSLLTISKGTTID 188

Query: 995  GVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRIGGFRLP 1174
            GVHC PD VELLP QPD+S+PR+RIVVHEGR HEVRELV+NAGLQIH+LKRVRIGGFRLP
Sbjct: 189  GVHCTPDSVELLPPQPDVSKPRIRIVVHEGRKHEVRELVENAGLQIHALKRVRIGGFRLP 248

Query: 1175 SDLGLGKYAELNGASLRALGWK 1240
             DLGLGK+ ELN A+LRALGWK
Sbjct: 249  RDLGLGKHVELNDANLRALGWK 270


>ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, partial [Capsella rubella]
            gi|482562896|gb|EOA27086.1| hypothetical protein
            CARUB_v10023183mg, partial [Capsella rubella]
          Length = 456

 Score =  458 bits (1179), Expect = e-126
 Identities = 238/393 (60%), Positives = 282/393 (71%), Gaps = 22/393 (5%)
 Frame = +2

Query: 128  PRRHLRAVITSSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSERGG----EHYIPWIV 295
            P R LR  ++SS  S   EF+I FAPPKPKP            S RGG    + +IPWIV
Sbjct: 76   PIRTLRCSVSSS--SEPLEFDISFAPPKPKPA-----------STRGGVSPQQLFIPWIV 122

Query: 296  KDESGSLTMKKTPPELYLRAM------------------EQENTQXXXXXXXXXXXXXXX 421
            + + G+L ++  PP   + ++                  + + T                
Sbjct: 123  RGDDGTLKLQSQPPARLIHSLAIDATTQNPKKKEKSKKKQTQATSSSATASSSASASSPP 182

Query: 422  XXXXXXXXXXXRRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTP 601
                       RRFYNE F+EPPQRL+KVLAAAGVASRR+SEELIF GKVTVNG +C TP
Sbjct: 183  PQSVPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTP 242

Query: 602  QTRVDPGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWN 781
            QTRVDP +D+IYVNG+R+ KKLPPKVY ALNKPKGYICS+GEKE KS +SLFD++M SW+
Sbjct: 243  QTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFDEYMASWD 302

Query: 782  KRNPGVPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQ 961
            KRNPG PKPRLFTVGRLDV TTGLIIVTNDG+FA ++SHPSS+L KEYI T+ G + KR 
Sbjct: 303  KRNPGTPKPRLFTVGRLDVATTGLIIVTNDGDFAQQLSHPSSSLPKEYITTVVGDIHKRH 362

Query: 962  LISISEGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSL 1141
            L++ISEGTIV+GVHC+PDLVEL+P+Q DI R RLRIVVHEGRNHEVRELVKNAGL +HSL
Sbjct: 363  LMAISEGTIVEGVHCVPDLVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLVVHSL 422

Query: 1142 KRVRIGGFRLPSDLGLGKYAELNGASLRALGWK 1240
            KRVRIGGFRLPSDLGLGK+AEL  + L+ LGWK
Sbjct: 423  KRVRIGGFRLPSDLGLGKHAELKQSELKVLGWK 455


>ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Fragaria vesca subsp. vesca]
          Length = 397

 Score =  457 bits (1176), Expect = e-126
 Identities = 239/360 (66%), Positives = 274/360 (76%), Gaps = 2/360 (0%)
 Frame = +2

Query: 170  SASTEFNIKFAP-PKPKPQLQKTSDSASKDSERGGEHYIPWIVKDESGSLTMKKTPPELY 346
            S+S EFNI FAP PKPKP       S+S     G + +IPWIV+ E G L ++  PP   
Sbjct: 35   SSSLEFNITFAPAPKPKPDPNSLPASSSSS---GQQLFIPWIVRGEDGKLKLQSHPPARL 91

Query: 347  LRAMEQENTQXXXXXXXXXXXXXXXXXXXXXXXXXX-RRFYNERFREPPQRLAKVLAAAG 523
            L  M Q +T+                           RRFYNE FRE  QRL+KVLAAAG
Sbjct: 92   LHEMAQADTKTKSKKNKDTAQKKQRVLTAEPKHSKAARRFYNENFRES-QRLSKVLAAAG 150

Query: 524  VASRRSSEELIFQGKVTVNGAVCKTPQTRVDPGQDMIYVNGSRLAKKLPPKVYLALNKPK 703
            VASRRSSE+LIF GKVTVNG+VC TPQT VDPG+D+IYVNG+RL KKLPPKVYLALNKPK
Sbjct: 151  VASRRSSEQLIFDGKVTVNGSVCNTPQTPVDPGRDIIYVNGNRLPKKLPPKVYLALNKPK 210

Query: 704  GYICSAGEKETKSALSLFDDFMKSWNKRNPGVPKPRLFTVGRLDVNTTGLIIVTNDGEFA 883
            GYIC+AGEK  KS LSLFDD++KSW+KRNPG P+PRLFTVGRLDV TTGLI+VTNDG+FA
Sbjct: 211  GYICAAGEK--KSVLSLFDDYLKSWDKRNPGTPRPRLFTVGRLDVATTGLIVVTNDGDFA 268

Query: 884  NKVSHPSSNLSKEYIATISGVVSKRQLISISEGTIVDGVHCIPDLVELLPQQPDISRPRL 1063
              +SHPS+NL+KEYIA I G VSK+ LI+ISEGT++DGVHC PD VELLPQQP+ISR RL
Sbjct: 269  QSISHPSANLTKEYIAVIEGSVSKKSLIAISEGTVIDGVHCTPDSVELLPQQPEISRSRL 328

Query: 1064 RIVVHEGRNHEVRELVKNAGLQIHSLKRVRIGGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            RIVVHEGRNHEVRELVK AGL+IHSLKRVRIGGFRLP++LGLG + EL    L ALGWK+
Sbjct: 329  RIVVHEGRNHEVRELVKKAGLEIHSLKRVRIGGFRLPTNLGLGTHMELRQGDLSALGWKT 388


>ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsis thaliana]
            gi|21617894|gb|AAM66944.1| unknown [Arabidopsis thaliana]
            gi|26450440|dbj|BAC42334.1| unknown protein [Arabidopsis
            thaliana] gi|330254545|gb|AEC09639.1| pseudouridine
            synthase family protein [Arabidopsis thaliana]
          Length = 410

 Score =  455 bits (1170), Expect = e-125
 Identities = 233/389 (59%), Positives = 281/389 (72%), Gaps = 17/389 (4%)
 Frame = +2

Query: 128  PRRHLRAVITSSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSERGGEHYIPWIVKDES 307
            P R LR  ++SS SS   EF+I FAPPKPKP       S++       + +IPWIV+ + 
Sbjct: 30   PIRTLRCSVSSS-SSEPIEFDISFAPPKPKP-------SSTHGGVTPQQLFIPWIVRSDD 81

Query: 308  GSLTMKKTPPELYLRAM-----------------EQENTQXXXXXXXXXXXXXXXXXXXX 436
            G+L ++  PP   +  +                 +Q                        
Sbjct: 82   GTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATTTASSPASHSEVKP 141

Query: 437  XXXXXXRRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRVD 616
                  RRFYNE F+E PQRL+KVLAAAGVASRR+SEELIF GKVTVNG +C TPQTRVD
Sbjct: 142  KLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVD 201

Query: 617  PGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRNPG 796
            P +D+IYVNG+R+ KKLPPKVY ALNKPKGYICS+GEKE KSA+SLFD+++ SW+KRNPG
Sbjct: 202  PSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPG 261

Query: 797  VPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLISIS 976
             PKPRLFTVGRLDV TTGLI+VTNDG+FA K+SHPSS+L KEYI T+ G + KR L++IS
Sbjct: 262  TPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAIS 321

Query: 977  EGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRI 1156
            EGT+V+GVHC+PD VEL+P+Q DI R RLRIVVHEGRNHEVRELVKNAGL++HSLKRVRI
Sbjct: 322  EGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRI 381

Query: 1157 GGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            GGFRLPSDLGLGK+ EL  + L+ALGWK+
Sbjct: 382  GGFRLPSDLGLGKHVELKQSELKALGWKN 410


>ref|XP_007143753.1| hypothetical protein PHAVU_007G098900g [Phaseolus vulgaris]
            gi|561016943|gb|ESW15747.1| hypothetical protein
            PHAVU_007G098900g [Phaseolus vulgaris]
          Length = 403

 Score =  451 bits (1161), Expect = e-124
 Identities = 236/389 (60%), Positives = 280/389 (71%), Gaps = 9/389 (2%)
 Frame = +2

Query: 104  LSKTSF-VLPRRHLRAVITSSLSSASTEFNIKFAPPKPKPQLQKTSDSASKDSERGGEHY 280
            LS  SF +LPR      +T S SS S  FNI FAPPKPKP+           +E  G   
Sbjct: 22   LSLASFRILPR------LTCSFSS-SINFNISFAPPKPKPKPNNLHPHPDLSNEPDGPLL 74

Query: 281  IPWIVKDESGSLTMKKTPPELYLRAM-------EQENTQXXXXXXXXXXXXXXXXXXXXX 439
            IPWIV+ E G+L ++  PP   L A+        +++ Q                     
Sbjct: 75   IPWIVRGEDGNLKLQSEPPPSLLNAIATAQTGTRKDSNQKTKTTAATTKPQKIRATAPPQ 134

Query: 440  XXXXXRRFYNERFREPP-QRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRVD 616
                 RRFYN+  +E    RL+KVLAA+GVASRRS EELIF+GKVTVNG+VC TPQTRVD
Sbjct: 135  HSKAARRFYNQNIKESSGARLSKVLAASGVASRRSCEELIFEGKVTVNGSVCNTPQTRVD 194

Query: 617  PGQDMIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRNPG 796
            P +D+IYVNG+RL K+ P KVYLALNKPKGYICS+GE E+KS +SLFDDF+ +W K+ PG
Sbjct: 195  PAKDVIYVNGNRLPKRQPQKVYLALNKPKGYICSSGENESKSVISLFDDFLNTWGKKRPG 254

Query: 797  VPKPRLFTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLISIS 976
            VP PRLFTVGRLDV TTGLIIVTNDG+FA K+SHPSSNLSKEYIAT+ G+V KR L++IS
Sbjct: 255  VPTPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATVDGLVYKRHLMAIS 314

Query: 977  EGTIVDGVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRI 1156
            EGT ++GVHC+PD VE+LP+Q D+ R R+RIVVHEGR HEVRELVKNAGL+IHSLKR+RI
Sbjct: 315  EGTTIEGVHCVPDAVEILPRQADMQRARIRIVVHEGRKHEVRELVKNAGLEIHSLKRIRI 374

Query: 1157 GGFRLPSDLGLGKYAELNGASLRALGWKS 1243
            GGFRLP DLGLGKY ELN  +L ALGWKS
Sbjct: 375  GGFRLPPDLGLGKYIELNPTNLNALGWKS 403


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  448 bits (1152), Expect = e-123
 Identities = 214/263 (81%), Positives = 243/263 (92%)
 Frame = +2

Query: 455  RRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGAVCKTPQTRVDPGQDMI 634
            RRFYNE FR+PPQRL+KVLAAAGVASRR+SEELIF+G+VTVNG+VC TPQTRVDP +DMI
Sbjct: 34   RRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTRVDPARDMI 93

Query: 635  YVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKSWNKRNPGVPKPRL 814
            YVNG+RL KKLPPKVYLALNKPKGYICS+GEKE+KS L LFDD++KSWNK+NPGVPKPR+
Sbjct: 94   YVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQNPGVPKPRI 153

Query: 815  FTVGRLDVNTTGLIIVTNDGEFANKVSHPSSNLSKEYIATISGVVSKRQLISISEGTIVD 994
            FTVGRLDV TTGLII+TNDG+FA K+SHPSS LSKEYIATI GVV+KR LI+ISEGT+++
Sbjct: 154  FTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIAISEGTVIE 213

Query: 995  GVHCIPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHSLKRVRIGGFRLP 1174
            GVHC PD VELLP QP+IS+PRLR+VVHEGRNHEVRELVK+AGLQIHSLKR+RIGGFRLP
Sbjct: 214  GVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRIRIGGFRLP 273

Query: 1175 SDLGLGKYAELNGASLRALGWKS 1243
            SDLG GK+ EL    L+ALGWKS
Sbjct: 274  SDLGHGKHVELKQGDLKALGWKS 296