BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00009628
         (380 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   197   1e-48
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   166   4e-39
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   155   4e-36
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   155   4e-36
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   154   1e-35
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   154   2e-35
gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis]     147   2e-33
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   146   3e-33
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   141   1e-31
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   140   1e-31
ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phas...   140   2e-31
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-...   138   7e-31
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   138   9e-31
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   137   2e-30
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ...   137   2e-30
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   136   4e-30
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   136   4e-30
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   135   5e-30
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   135   8e-30
gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]               135   8e-30

>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  197 bits (501), Expect = 1e-48
 Identities = 97/127 (76%), Positives = 114/127 (89%), Gaps = 1/127 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGDF-NTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLSVAK++SASKCLRVVGSIDQKIG++  TKYMEI+ DTS  +PEE V RQHM+ DV TL
Sbjct: 352 GLSVAKVMSASKCLRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTL 411

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+GL+ RE++VIILRFGLGNCQCKSLEEIG+ F VSKEWIR+IER+AL K+RNE+SLKIL
Sbjct: 412 LNGLEPREKQVIILRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKIL 471

Query: 23  NHYVYMQ 3
           NHYV+MQ
Sbjct: 472 NHYVHMQ 478


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  166 bits (419), Expect = 4e-39
 Identities = 80/124 (64%), Positives = 103/124 (83%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS+AKI SAS+CLRVVGSIDQKIG+  N KY+E +PDTS  +PEEVV RQHM++D++ L
Sbjct: 435 GLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNL 494

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L  LDSRER+V+ILRFGL + Q KSLEEIG+ F VSKEW+RR+E+  +T++RNEE+ + L
Sbjct: 495 LRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNL 554

Query: 23  NHYV 12
            HY+
Sbjct: 555 RHYI 558


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  155 bits (393), Expect = 4e-36
 Identities = 74/126 (58%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS+A+I SAS+CLR+VGSIDQKIGD  N KY+E  PD S  +P+E+V RQHM KDV+ +
Sbjct: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+ LDSRER+V++LR+GL + + KSLEEIGK F VSKEWIR++E+ A+TK+R+ E+ + L
Sbjct: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528

Query: 23  NHYVYM 6
           +H++ +
Sbjct: 529 SHFLVL 534


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553989|gb|ESR64003.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  155 bits (393), Expect = 4e-36
 Identities = 74/126 (58%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS+A+I SAS+CLR+VGSIDQKIGD  N KY+E  PD S  +P+E+V RQHM KDV+ +
Sbjct: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRI 468

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+ LDSRER+V++LR+GL + + KSLEEIGK F VSKEWIR++E+ A+TK+R+ E+ + L
Sbjct: 469 LESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDL 528

Query: 23  NHYVYM 6
           +H++ +
Sbjct: 529 SHFLVL 534


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  154 bits (390), Expect = 1e-35
 Identities = 76/124 (61%), Positives = 100/124 (80%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380  GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
            GLS+AKI SA+KC+RVVGSIDQKIGD  N KY+E IPD S  +PE+ V RQHM +D++ L
Sbjct: 723  GLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSPEKTVMRQHMKEDIHDL 782

Query: 203  LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
            L+GLD+RER+V++LR+GL     KSLEEIG+ F VSKEWIRRIE  A+ K+R++E+ + L
Sbjct: 783  LNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLRDKETCRNL 842

Query: 23   NHYV 12
            +HY+
Sbjct: 843  SHYL 846


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
           subsp. vesca]
          Length = 545

 Score =  154 bits (388), Expect = 2e-35
 Identities = 77/124 (62%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS+AKI SAS+CLRVVGS+D KI + +   YME  PD +  TPEE V RQHM  D++ L
Sbjct: 419 GLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQHMKNDIHVL 478

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+GL+SRE++V+ LR+GL  C  KSLEEIG+ F VSKEWIR+IE+ ALTK+RNEES K L
Sbjct: 479 LEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRNEESNKNL 538

Query: 23  NHYV 12
           +HY+
Sbjct: 539 SHYL 542


>gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 476

 Score =  147 bits (370), Expect = 2e-33
 Identities = 77/124 (62%), Positives = 95/124 (76%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS+ KI SA  CLRVVGSID KIGD F+ K ME + D S  TPEE V RQHM  D++ L
Sbjct: 352 GLSLDKIRSAGNCLRVVGSIDHKIGDCFSGKNMEFMADMSIKTPEETVMRQHMKSDIHNL 411

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+ LD RER+V++LR+GL NCQ KSLEEIGK F VSKEWIR+IE+ ALTK+R+E + +  
Sbjct: 412 LETLDPRERQVLVLRYGLINCQPKSLEEIGKLFKVSKEWIRKIEKKALTKLRDETN-EDF 470

Query: 23  NHYV 12
           +HY+
Sbjct: 471 SHYL 474


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
           gi|462419859|gb|EMJ24122.1| hypothetical protein
           PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  146 bits (369), Expect = 3e-33
 Identities = 75/124 (60%), Positives = 95/124 (76%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGDFNT-KYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS+A+I SAS CLRVVGS+D K+ + +   YME  PDTS  +PEE V RQHM KD++ L
Sbjct: 430 GLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQHMKKDIHDL 489

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L GL+ RER+V++LR+GL N   KSLEEIG+ F VSKEWIR+IE+ AL K+R EES K L
Sbjct: 490 LKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLRVEESHKYL 549

Query: 23  NHYV 12
           +HY+
Sbjct: 550 SHYL 553


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           tuberosum]
          Length = 555

 Score =  141 bits (355), Expect = 1e-31
 Identities = 71/123 (57%), Positives = 92/123 (74%), Gaps = 1/123 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS A+I  ASKCLRVVGSIDQK+GD  + K +E+ PD S  +PEE V RQ ++ ++Y+L
Sbjct: 431 GLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPEETVMRQDIVDNMYSL 490

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+ LD +E++VI  RFGL   Q KSLEEIG+ + VSKEWIRRIER ALTK+RN +  + +
Sbjct: 491 LESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRNADYFQHI 550

Query: 23  NHY 15
            HY
Sbjct: 551 THY 553


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           lycopersicum]
          Length = 551

 Score =  140 bits (354), Expect = 1e-31
 Identities = 71/123 (57%), Positives = 91/123 (73%), Gaps = 1/123 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS A+I  ASKCLRVVGSIDQK+GD  N K +E+ PD S  +PEE V RQ ++ ++Y L
Sbjct: 427 GLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEEFVMRQDIVDNMYAL 486

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+ LD +E++VI  RFGL   Q KSLEEIG+ + VSKEWIRRIER ALTK+R+ +  + +
Sbjct: 487 LESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADYFQHI 546

Query: 23  NHY 15
            HY
Sbjct: 547 THY 549


>ref|XP_007161319.1| hypothetical protein PHAVU_001G059800g [Phaseolus vulgaris]
           gi|561034783|gb|ESW33313.1| hypothetical protein
           PHAVU_001G059800g [Phaseolus vulgaris]
          Length = 538

 Score =  140 bits (353), Expect = 2e-31
 Identities = 70/123 (56%), Positives = 96/123 (78%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGDFNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 201
           GLS+ KI SAS CLR+V SIDQK+G+F+ +Y E++PDT+  +PE  V +QHM KDV+ LL
Sbjct: 414 GLSLDKIKSASNCLRIVASIDQKVGNFSIEYNELLPDTTIESPENGVLKQHMKKDVHDLL 473

Query: 200 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 21
            GL+SRER+++ LRFGL + Q KSL++IG  F VSKE IR+IE+ ALTK+RNE +   L+
Sbjct: 474 KGLNSRERQILSLRFGLIDNQPKSLQDIGTLFKVSKERIRKIEKIALTKLRNEATTSDLH 533

Query: 20  HYV 12
           +Y+
Sbjct: 534 YYL 536


>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
          Length = 545

 Score =  138 bits (348), Expect = 7e-31
 Identities = 67/123 (54%), Positives = 93/123 (75%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGDFNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 201
           GLS+ +I SAS C+R+V S++QK+GD   +YM  + D S  +PEE V +QH+ KD++ +L
Sbjct: 421 GLSLDRIRSASHCMRIVSSMNQKMGDRGIEYMGYMADMSIESPEETVMKQHIRKDIHDIL 480

Query: 200 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 21
             LDSRER+++ILRFGL + Q KSLE IGK + VSKEWIR+IE+ ALTK+RNE +   LN
Sbjct: 481 QSLDSRERQILILRFGLNDHQPKSLEYIGKIYKVSKEWIRKIEKKALTKLRNEANTSKLN 540

Query: 20  HYV 12
           +Y+
Sbjct: 541 YYL 543


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
           gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
           polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  138 bits (347), Expect = 9e-31
 Identities = 68/124 (54%), Positives = 95/124 (76%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GL +AK+  AS CL+VVGS DQK+GD  N KYME   D S  +PEE V R+ M KD++ +
Sbjct: 435 GLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNI 494

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L  L+SRER+V++LR+GL + + KSLEEIGK   +SKEW+R+IE+ A+TK++NEE++K L
Sbjct: 495 LQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHL 554

Query: 23  NHYV 12
           +HY+
Sbjct: 555 SHYL 558


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  137 bits (345), Expect = 2e-30
 Identities = 66/124 (53%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           G SV KI +A++CL+VVGSID+K+GD F TK++E  PDT+  +PEE V RQ   +D++ L
Sbjct: 446 GHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDL 505

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+GL+ RE++V++LR+GL + + KSLEEIGK F VSKEWIR+IER A+ K+R++ + + L
Sbjct: 506 LEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDL 565

Query: 23  NHYV 12
            +Y+
Sbjct: 566 RYYL 569


>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine
           max]
          Length = 551

 Score =  137 bits (345), Expect = 2e-30
 Identities = 67/124 (54%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGDF-NTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS+ KI SAS CLR+V SIDQK+GD+   +YME++PD +  +PE+ V +QHM KDV+ L
Sbjct: 426 GLSLDKIKSASNCLRIVASIDQKVGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHDL 485

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L GL+ RER+++ LRFGL + Q +SL++IG  F VSKE IR+IE+ ALTK++NE ++  L
Sbjct: 486 LKGLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISKL 545

Query: 23  NHYV 12
           ++Y+
Sbjct: 546 HYYL 549


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  136 bits (342), Expect = 4e-30
 Identities = 69/124 (55%), Positives = 89/124 (71%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS+AKI SA  CLRVVGS DQ   D +    +E  PDTS  +PEE   +Q   KD++ L
Sbjct: 436 GLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNL 495

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L GLD RER++++LR+G G  Q KSLEEIG+RF+VSKEWIR++E+TAL  +R+EE  + L
Sbjct: 496 LKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNL 555

Query: 23  NHYV 12
            HYV
Sbjct: 556 RHYV 559


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  136 bits (342), Expect = 4e-30
 Identities = 69/124 (55%), Positives = 89/124 (71%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           GLS+AKI SA  CLRVVGS DQ   D +    +E  PDTS  +PEE   +Q   KD++ L
Sbjct: 486 GLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNL 545

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L GLD RER++++LR+G G  Q KSLEEIG+RF+VSKEWIR++E+TAL  +R+EE  + L
Sbjct: 546 LKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNL 605

Query: 23  NHYV 12
            HYV
Sbjct: 606 RHYV 609


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323785|gb|EFH54206.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  135 bits (341), Expect = 5e-30
 Identities = 65/123 (52%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
 Frame = -1

Query: 377 LSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTLL 201
           LSV KI +A++CL+VVGSI++K+GD F+TK++E  PDT+  +PEE V RQ   +D++ LL
Sbjct: 444 LSVKKIRAANQCLKVVGSIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLL 503

Query: 200 DGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKILN 21
           +GL+ RE++V++LR+GL N + KSLEEIGK   VSKEWIR+IER A+ K+R++ + + L 
Sbjct: 504 EGLEPREKQVMVLRYGLQNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLR 563

Query: 20  HYV 12
           +Y+
Sbjct: 564 YYL 566


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
           gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
           polymerase sigma factor sigC; Short=Sigma factor C;
           Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
           sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
           Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
           [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
           [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
           factor SigC [Arabidopsis thaliana]
           gi|7630012|emb|CAB88354.1| sigma factor SigC
           [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
           At3g53920 [Arabidopsis thaliana]
           gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
           C [Arabidopsis thaliana]
          Length = 571

 Score =  135 bits (339), Expect = 8e-30
 Identities = 65/124 (52%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           G SV KI +A++CL+VVGSID+K+GD F TK++E  PDT+  +PEE V RQ   +D++ L
Sbjct: 446 GHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDL 505

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+GL+ RE++V++LR+GL + + KSLEEIGK   VSKEWIR+IER A+ K+R++ + + L
Sbjct: 506 LEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDL 565

Query: 23  NHYV 12
            +Y+
Sbjct: 566 RYYL 569


>gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
          Length = 291

 Score =  135 bits (339), Expect = 8e-30
 Identities = 65/124 (52%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
 Frame = -1

Query: 380 GLSVAKIISASKCLRVVGSIDQKIGD-FNTKYMEIIPDTSTATPEEVVFRQHMMKDVYTL 204
           G SV KI +A++CL+VVGSID+K+GD F TK++E  PDT+  +PEE V RQ   +D++ L
Sbjct: 166 GHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDL 225

Query: 203 LDGLDSREREVIILRFGLGNCQCKSLEEIGKRFSVSKEWIRRIERTALTKMRNEESLKIL 24
           L+GL+ RE++V++LR+GL + + KSLEEIGK   VSKEWIR+IER A+ K+R++ + + L
Sbjct: 226 LEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDL 285

Query: 23  NHYV 12
            +Y+
Sbjct: 286 RYYL 289