BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00005881
         (4675 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus...  2134   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  1925   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1912   0.0  
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...  1862   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1715   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1713   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1600   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1548   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1545   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...  1544   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...  1544   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1533   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1512   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1510   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...  1508   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...  1473   0.0  
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...  1463   0.0  
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...  1459   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...  1450   0.0  
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...  1449   0.0  

>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
          Length = 1719

 Score = 2134 bits (5530), Expect = 0.0
 Identities = 1097/1609 (68%), Positives = 1273/1609 (79%), Gaps = 53/1609 (3%)
 Frame = -3

Query: 4670 FRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKK----IGTDP-----EESDGSH 4518
            F +  EE EN+VSQLE IR+GDLAGAK+L L      KK    + TD      E+S GSH
Sbjct: 109  FISSAEETENFVSQLELIRKGDLAGAKKLALGSSFKGKKKMVFVSTDDDTDEREDSQGSH 168

Query: 4517 ASHSGVSSDGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTF 4338
             SHS V SDGEN  + ++ A W S  L E+ SV+NE+L+++ KKC NC+   PKI+KPTF
Sbjct: 169  MSHSAVLSDGENHFKDDEQASWSSAQLAEAISVMNEYLRRKGKKCMNCEMRCPKISKPTF 228

Query: 4337 GWFHVTGISKTE-MRSNAIRSSRLDVTYS-GDEDRPSSEVLNTSDYSLXXXXXXXXXXXX 4164
            GWF V G +  + +R N IRS +LD + S G ED  SSEV+N  D+S+            
Sbjct: 229  GWFQVGGATSAKAIRENVIRSHKLDESDSDGGEDNFSSEVVNAGDHSMNDDSETVESNSF 288

Query: 4163 XXXXXK------------RDLNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYIC 4020
                              + LN    +     SG LLPS+VR+IL+ LWE EA  CSYI 
Sbjct: 289  IATSNSTKKSKKKGVNRAKKLNPGSGDPNFYLSGPLLPSQVRDILKLLWEKEASFCSYIS 348

Query: 4019 DIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIAL 3840
            DIQRQ  K  G   G+SMFFLET+LVPPIRFRP AKGGDSVMEH  T+LLGKVLQ+NIAL
Sbjct: 349  DIQRQKCKPFGNKTGYSMFFLETVLVPPIRFRPPAKGGDSVMEHPQTVLLGKVLQSNIAL 408

Query: 3839 GNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNM 3660
            GNAH N AE S+II RWM+LQQSINV +DSKTA S +QK+   GICQ LEKK+G+FRQ M
Sbjct: 409  GNAHVN-AEKSKIISRWMELQQSINVYFDSKTATSLAQKDSIAGICQFLEKKEGIFRQKM 467

Query: 3659 MGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHP 3480
            MGKRVNFACRSVISPDPYLAVNEIGIPP+FALKLTYPERVTPWNA KLR AV+NGPDIHP
Sbjct: 468  MGKRVNFACRSVISPDPYLAVNEIGIPPYFALKLTYPERVTPWNAAKLRGAVVNGPDIHP 527

Query: 3479 GATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDI 3300
            GAT Y DSV+  +LP ++KMR+A+SRKLPSSR VV+QSGK  + EFEGK V RHLQDGDI
Sbjct: 528  GATTYVDSVTIVKLPPSQKMRVAISRKLPSSRGVVTQSGKFDDLEFEGKTVHRHLQDGDI 587

Query: 3299 VLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAE 3120
            VLVNRQPTLHKPSIMAH+VRVL GERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAE
Sbjct: 588  VLVNRQPTLHKPSIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAE 647

Query: 3119 AYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGP 2940
            AYNIVNANEQYIVPTKGDTVRGLIQDHIV AVL+TMKNTF+ RSEF+QLLYGSGVFA+GP
Sbjct: 648  AYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFNQLLYGSGVFASGP 707

Query: 2939 GSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQG 2760
            GS P + S KV+++D+EG+VES+LPA+WKPEPLWTGKQVITALLNHITRGCAP TV+NQG
Sbjct: 708  GSLPKNNSRKVTLIDTEGVVESVLPAIWKPEPLWTGKQVITALLNHITRGCAPFTVENQG 767

Query: 2759 KVPKNYFASASYKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSN 2580
            K+PKNYF   SY  GEED+D NAEH+LL+WKNELVRGVIDKAQFGK+GLVHTVQELYG++
Sbjct: 768  KIPKNYFFGNSYTRGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGAS 827

Query: 2579 SAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEGEDVGEEVHCDFVKFK 2400
            SAGI LSALSR+FT+FLQ HGFTCGVDDLIILP++D QRKEKLEGEDVGE VHCDFVKFK
Sbjct: 828  SAGIFLSALSRVFTLFLQIHGFTCGVDDLIILPDYDDQRKEKLEGEDVGEVVHCDFVKFK 887

Query: 2399 PGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPF 2220
            PGQIGP+ELQLEIEK IC+DRESATA+LDMKMKNKL ++LT EGSQILKHLLT GLLKPF
Sbjct: 888  PGQIGPDELQLEIEKVICTDRESATASLDMKMKNKLNSKLTREGSQILKHLLTAGLLKPF 947

Query: 2219 PKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGG 2040
            PKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWD+T+RAGG
Sbjct: 948  PKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFTSRAGG 1007

Query: 2039 FITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRD 1860
            FITDRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYDYTVRD
Sbjct: 1008 FITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVCYDYTVRD 1067

Query: 1859 SDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYISELPEGLEEE 1680
            +DGSIVQFYYGEDG+DVH+TSFL NFKAL+DNRETI QKFQ+ REFNSYI +LPEGLEEE
Sbjct: 1068 ADGSIVQFYYGEDGIDVHRTSFLNNFKALQDNRETICQKFQHKREFNSYIKKLPEGLEEE 1127

Query: 1679 ARRFIHETHGNTSGKHNASS----EQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYL 1512
            A+RFI ET   +  K + S+        +              A  ++  FLELVKQKYL
Sbjct: 1128 AKRFIQETQNKSLAKQSTSAGEGPHSSRKARKKEKLLKKEKAAAAYEQDAFLELVKQKYL 1187

Query: 1511 TSLAESGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKT 1332
            +SLA++GEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILM+A   IKT
Sbjct: 1188 SSLAQAGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMSASEVIKT 1247

Query: 1331 PILTCPFSEVRSKRDVVALVTKVKKVSVADLLESMEVQLSINRRKVARTYKLKMKLKETE 1152
            P+LTCPFS+ RSKR+VV+LV+ VKKVSVADL+E+MEVQLS+N +  AR YKLKM LK+TE
Sbjct: 1248 PLLTCPFSQWRSKREVVSLVSHVKKVSVADLIENMEVQLSVNHKTAARVYKLKMTLKDTE 1307

Query: 1151 FVSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTR 972
            FVS +++  TL+  FL E+E  IENH+++LS++SGIKNF                     
Sbjct: 1308 FVSLENMHETLKTTFLGELEDAIENHVLYLSRLSGIKNFASNPKPKSSNEADEDESGLGT 1367

Query: 971  K-------XXXXXXXXXXXXXXXXXXDTQKKTDEMNYGNESDVDHCEDELSADTKKGASD 813
            +                           Q+ TD+M+Y + SD    ED+  +D +KG SD
Sbjct: 1368 ENAGVNDDDDDDDDDKGDDLGSDVQKRKQQATDDMDYEDGSDGGAAEDD-DSDLEKGKSD 1426

Query: 812  EEDHEDMDTSKDEGAEHSGKEDETRDEQNANE----------GSTRSKKT---------D 690
             E+ E+ +T KDE +EH+  +DE  + QN +E          GS++ K +          
Sbjct: 1427 VENLEEDETGKDEESEHTDDKDEASNVQNEDEAISEGTKSSVGSSKGKTSFDKSSVELKG 1486

Query: 689  AKIRRAVKHVFERSSFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPD 510
             KIRRA   V + + FEVHF+F  EPH+L+AQ+AQKT++KV++++SG++SQC++V YDPD
Sbjct: 1487 KKIRRAFYMVVKGTKFEVHFEFHEEPHMLIAQLAQKTSKKVYIRKSGKVSQCKMVSYDPD 1546

Query: 509  EKTVIWNDTMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHA 330
            EKTVIW+++ KP+RGE+K +   +D  YWA+KASG+DFKSFW+MH+DLDLSRLYSNN+HA
Sbjct: 1547 EKTVIWDNSKKPKRGESKSE--EEDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNIHA 1604

Query: 329  VLNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESL 150
            +L TYGVEAARAT+IREVK VFDIYGVKIDYRHLSLIAD+MTHTG Y PMSR GSISESL
Sbjct: 1605 MLTTYGVEAARATIIREVKHVFDIYGVKIDYRHLSLIADHMTHTGSYLPMSRHGSISESL 1664

Query: 149  SPFLKMSFETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            SPFLKMSFETASKFIVEAA  GL D+L+TPSSRICLGLPVK+GTG FD+
Sbjct: 1665 SPFLKMSFETASKFIVEAASHGLTDKLDTPSSRICLGLPVKMGTGSFDV 1713


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 1925 bits (4988), Expect = 0.0
 Identities = 990/1592 (62%), Positives = 1213/1592 (76%), Gaps = 35/1592 (2%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HFRA + EVE  VS+LE I +GD+ GAK +  L         TD EES+GSH S +    
Sbjct: 104  HFRASRAEVEKCVSELELIAKGDVVGAKMIDALSP----DNSTDREESEGSHMSCAMDDL 159

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 4314
            + ++  E+ K   WD+   TE+ +V++  LK + +KC NCK  NPKI KP+FG FH+  I
Sbjct: 160  NMQDHREYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMD-I 218

Query: 4313 SKTEMRSNAIRSSRLDVTYS--GDEDRPSSEVLNTSD------YSLXXXXXXXXXXXXXX 4158
            S  ++R N I S R    +   G E+ PS EV+N ++       SL              
Sbjct: 219  SNKQIRENYINSGRRFNLHDTGGSEENPSPEVVNATEPLGEAETSLCVTSTDGVENSKAR 278

Query: 4157 XXXKRDLNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYME 3978
                 D +  ++++ D FS + LPS+VR+I+  LWENEAPLC++ CDIQ Q+   SG + 
Sbjct: 279  KRQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHHNTSGKVA 338

Query: 3977 GFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRII 3798
            G SMFFL++ILVPPI+FRP AKGGDS+MEH HT+LLGKV+QANIALGNAH N A  S+II
Sbjct: 339  GPSMFFLDSILVPPIKFRPPAKGGDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSKII 398

Query: 3797 GRWMDLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVIS 3618
             R MDLQQS+NVL+DSKTA+   QK+   GICQ LEKK+G+FRQ MMGKRVNFACRSVIS
Sbjct: 399  SRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVIS 458

Query: 3617 PDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRL 3438
            PDPYL+VNEIGIPP+FAL+LTYPER+TPWNA K+R AVINGP+ HPGA ++ D +++ +L
Sbjct: 459  PDPYLSVNEIGIPPYFALRLTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKL 518

Query: 3437 PANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSI 3258
            P+NKKMR+A+SRKLPSSR  V+QSG+  E+EFEGK+V RHLQDGD+VLVNRQPTLHKPSI
Sbjct: 519  PSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSI 578

Query: 3257 MAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVP 3078
            MAH+VRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNANEQYIVP
Sbjct: 579  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVP 638

Query: 3077 TKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVV 2898
            TKGDTVRGLIQDHIV AV++TMKNTFLT  EF+QLLYGSGVFAAGP    G+ S KVSVV
Sbjct: 639  TKGDTVRGLIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVV 698

Query: 2897 DSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASAS--- 2727
            D EG+V+++LPAVWKP+PLWTGKQVITALLNH+T+GCAPCTVKN+GK+P  YF S S   
Sbjct: 699  DFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSESRLV 758

Query: 2726 -YKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALS 2550
             Y++ EE +D  AE++ LIWKNELVRGVIDKAQFGK+GLVHT+QELYGSN AGILLSALS
Sbjct: 759  EYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALS 818

Query: 2549 RLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEGEDVGEEVHCDFVKFKPGQIGPEELQ 2370
            RLFTIFLQ HGFTCGVDDL+ILP++D++RKE+LEG+DVGEE HCDFVKFK G+IGP ELQ
Sbjct: 819  RLFTIFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQ 878

Query: 2369 LEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTT 2190
            LEIEKA+ S++E+ATA LDMKMKNKL N+    GSQ  K LL KGLLKPFP+NCI++MT 
Sbjct: 879  LEIEKAMSSNKEAATAALDMKMKNKLANK----GSQFNKELLLKGLLKPFPRNCIALMTI 934

Query: 2189 TGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGL 2010
            TGAKGSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLP FPPWD  +RAGG+++DRFLSGL
Sbjct: 935  TGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGL 994

Query: 2009 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYY 1830
            RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRD+DGSI+QFYY
Sbjct: 995  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYY 1054

Query: 1829 GEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYISELPEGLEEEARRFIHETHG 1650
            GEDGVDVH+TSFLKNFKAL++N+ETI QK ++ R+ NSYI +LP+GLEE+ + F  +   
Sbjct: 1055 GEDGVDVHRTSFLKNFKALKNNQETICQKLRHGRKLNSYIEKLPDGLEEKVKHFWEK--- 1111

Query: 1649 NTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVIA 1470
                     +++L +             +   +E  FLELV+QKY +SLA+SGEPVGV+A
Sbjct: 1112 --------RTKKLEKKLGKLVKKEEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLA 1163

Query: 1469 AQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVRSKR 1290
             QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA   IKTPILTCPF   +SK 
Sbjct: 1164 GQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKN 1223

Query: 1289 DVVALVTKVKKVSVADLLESMEVQ---LSINRRKVARTYKLKMKLKETEFVSSKDIKNTL 1119
            D  +L+ KVKK++VAD++ESMEV+   LSI   +V++ YKL +KLK+ +FVSS+D + TL
Sbjct: 1224 DAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTL 1283

Query: 1118 EGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRKXXXXXXXXXX 939
            + VFL+E+E  IE+HL  LSKI+GI+NF                     +          
Sbjct: 1284 KFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRHEEEMLDDEDED 1343

Query: 938  XXXXXXXXDTQKK----TDEMNYGNESDVDHCEDELS-ADTKKGASDEEDHEDMDTSKDE 774
                    D QK+    TDEM+Y ++ + D  E      D K   +DE D+ D +   + 
Sbjct: 1344 ERTEDLSSDAQKRKQQTTDEMDYDDDENEDEAETTAEIEDEKSEQTDEIDNGDEEEIGNR 1403

Query: 773  GAEHSGKEDETRDEQNANEGSTRSK-KTDAKIRRAVKH-----------VF---ERSSFE 639
            G E    + ++ ++  +N  S++SK KT   +++  K            VF   E   FE
Sbjct: 1404 GNEEQMSKLQSTEDDISNTKSSKSKTKTKTTVKQNKKKERRSKKDSDRCVFVDVEGLHFE 1463

Query: 638  VHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWNDTMKPRRGEN 459
            VHF+F  EPH+LLAQ+AQKTA+KV++K SG++ QCR+V+Y+  E TV+W++       + 
Sbjct: 1464 VHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDEY------QT 1517

Query: 458  KPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVEAARATLIRE 279
            K Q+   D+ YWA+KA+G+DF +FW+M +DLD++R+Y+NN+ A+LNTYGVEAARA+++RE
Sbjct: 1518 KQQSQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILRE 1577

Query: 278  VKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMSFETASKFIVE 99
            VK VF IYGV+ID+RHLSLIAD+MTHTGGY+PMSR GSISESLSPFLKMSFETASKFIVE
Sbjct: 1578 VKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVE 1637

Query: 98   AALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            AA  GL D LETPSSRICLGLPVK+GTGCFD+
Sbjct: 1638 AAAHGLTDNLETPSSRICLGLPVKMGTGCFDI 1669


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 1912 bits (4953), Expect = 0.0
 Identities = 981/1594 (61%), Positives = 1203/1594 (75%), Gaps = 37/1594 (2%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HFRA + EVE  VS+LE I +GD+ GAK +  L         TD EES+GSH S +    
Sbjct: 104  HFRASRAEVEKCVSELELIAKGDVVGAKMIDALSP----DNSTDREESEGSHMSCTMDDL 159

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 4314
            +  +  E+ K   WD+   TE+ +V++  LK + +KC NCK  NPKI KP+FG FH+  I
Sbjct: 160  NVRDHCEYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMD-I 218

Query: 4313 SKTEMRSNAIRSSRLDVTYS--GDEDRPSSEVLNTSD------YSLXXXXXXXXXXXXXX 4158
            S  ++R N I S R    +   G E+ PS EV+N ++       SL              
Sbjct: 219  SNKQIRENYINSGRRFNLHDTGGSEENPSPEVVNATEPLGEAETSLCVTSTDGVENSKGR 278

Query: 4157 XXXKRDLNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYME 3978
                 D +  ++++ D FS + LPS+VR+I+  LWENEAPLC++ CDIQ Q+   SG + 
Sbjct: 279  KRQGGDQSDVVEQQKDSFSVAHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKVA 338

Query: 3977 GFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRII 3798
            G SMFFL++ILVPP++FRP AKGGDS+MEH HT+LLGKV+QANIALGNAH N A  S+II
Sbjct: 339  GPSMFFLDSILVPPVKFRPPAKGGDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSKII 398

Query: 3797 GRWMDLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVIS 3618
             R MDLQQS+NVL+DSKTA+   QK+   GICQ LEKK+G+FRQ MMGKRVNFACRSVIS
Sbjct: 399  SRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVIS 458

Query: 3617 PDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRL 3438
            PDPYL+VNEIGIPP+FA +LTYPER+TPWNA K+R AVINGP+ HPGA ++ D +++ +L
Sbjct: 459  PDPYLSVNEIGIPPYFASRLTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKL 518

Query: 3437 PANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSI 3258
            P+NKKMR+A+SRKLPSSR  V+QSG+  E+EFEGK+V RHLQDGD+VLVNRQPTLHKPSI
Sbjct: 519  PSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSI 578

Query: 3257 MAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVP 3078
            MAH+VRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNANEQYIVP
Sbjct: 579  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVP 638

Query: 3077 TKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVV 2898
            TKGDTVRGLIQDHIV AV++TMKNTFL+  EF+QLLYGSGVFAAGP    G+ S KVS+V
Sbjct: 639  TKGDTVRGLIQDHIVGAVILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIV 698

Query: 2897 DSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASAS--- 2727
            D EG+V+++LPAVWKP+PLWTGKQVITALLNH+T GC PCTVKN+GK+P  YF S S   
Sbjct: 699  DFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRLV 758

Query: 2726 -YKNGEEDQDHNAEHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALS 2550
             Y++ EE +D  AE++ LIWKNELVRGVIDKAQFGK+GLVHT+QELYGSN AGILLSALS
Sbjct: 759  EYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALS 818

Query: 2549 RLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEGEDVGEEVHCDFVKFKPGQIGPEELQ 2370
            RLFTIFLQ HGFTCG+DDL+ILP++D++RKE+LEG+DVGEE HCDFVKFK G+IGP ELQ
Sbjct: 819  RLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQ 878

Query: 2369 LEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTT 2190
            LEIEKAI S++E ATA LDMKMKNKL N+    GSQ  K LL KGLLKPFP+NCI++MT 
Sbjct: 879  LEIEKAISSNKEVATAALDMKMKNKLANK----GSQFNKELLLKGLLKPFPRNCIALMTI 934

Query: 2189 TGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGL 2010
            TGAKGSTVNFQQIS+YLGQQELEGKRVPRMVSGKTLP FP WD  +RAGG+++DRFLSGL
Sbjct: 935  TGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGL 994

Query: 2009 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYY 1830
            RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRD+DGSI+QFYY
Sbjct: 995  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYY 1054

Query: 1829 GEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYISELPEGLEEEARRFIHETHG 1650
            GEDGVDVH+TSFLKNFKAL++N+ETI QK ++  + NSYI +LP+GL E+ + F      
Sbjct: 1055 GEDGVDVHRTSFLKNFKALKNNQETICQKLRHGCKLNSYIEKLPDGLGEKVKHF------ 1108

Query: 1649 NTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVIA 1470
                   + +++L +             +   +E  FLELV QKY +SLA+SGEPVGV+A
Sbjct: 1109 -----WESKTKKLEKKLGMLVKKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLA 1163

Query: 1469 AQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVRSKR 1290
             QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA   IKTPI+TCPF   +SK 
Sbjct: 1164 GQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKN 1223

Query: 1289 DVVALVTKVKKVSVADLLESMEVQ---LSINRRKVARTYKLKMKLKETEFVSSKDIKNTL 1119
            D  +L+ KVKK++VAD++ESMEV+   LSI   +V++ YKL +KLK+ +FVSS+D + TL
Sbjct: 1224 DAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTL 1283

Query: 1118 EGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRKXXXXXXXXXX 939
            + VFL+E+E  IE+HL  LSKI+GI+NF                    R+          
Sbjct: 1284 KFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRREEEMLDDDDDD 1343

Query: 938  XXXXXXXXDT------QKKTDEMNYGNESDVDHCEDELSA---DTKKGASDEEDHEDMDT 786
                     +      Q+ TDEM+Y ++ D    E E +A   D K   +DE D+ D + 
Sbjct: 1344 EDERTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNGDEEE 1403

Query: 785  SKDEG-AEHSGKEDETRDEQNANEGSTRSKKTDAKIRRAVKHVFERSS------------ 645
            + D G  EH+ K   T ++ +  + S    KT  K ++  +   ++ S            
Sbjct: 1404 NGDRGNEEHTSKLQSTEEDISNTKTSKSKTKTTVKQKKKKERRSKKDSDRCVFVDVEGLH 1463

Query: 644  FEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWNDTMKPRRG 465
            FEVHF+F  EPH+LLAQ+AQKTA+KV++K SG++ QCR+V+Y+  E TV+W++       
Sbjct: 1464 FEVHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDE------N 1517

Query: 464  ENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVEAARATLI 285
            + K Q    D+ YWA+KA+G+DF +FW+M +DLD++R+Y+NN+ A+LNTYGVEAARA+++
Sbjct: 1518 QTKQQRQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASIL 1577

Query: 284  REVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMSFETASKFI 105
            REVK VF IYGV+ID+RHLSLIAD+MTHTGGY+PMSR GSISESLSPFLKMSFETASKFI
Sbjct: 1578 REVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFI 1637

Query: 104  VEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            VEAA  GL D LETPSSRICLGLPVK+GTGCFD+
Sbjct: 1638 VEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDI 1671


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 1862 bits (4822), Expect = 0.0
 Identities = 979/1584 (61%), Positives = 1169/1584 (73%), Gaps = 27/1584 (1%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HF+  + EVE  VSQL  IR+GD+AGA+RL  L  ++         ++ GSH++ S V S
Sbjct: 102  HFKVGRLEVETCVSQLHLIRKGDIAGARRLRSLGGLS---------DNQGSHSTGSVVLS 152

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFH-VTG 4317
            + E+  +      WDS  LTE+  VLNEF +K+EKKC NC+  +PKIT P FGWF+ V  
Sbjct: 153  ESESGQDLNWCRSWDSIQLTEAMGVLNEFFRKKEKKCKNCESRSPKITNPIFGWFYAVYA 212

Query: 4316 ISKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXKRDL 4137
            I ++  +   IR  +         D+PS E    S+ S                     L
Sbjct: 213  IHRSSSKGTHIREGK---------DKPSPE---NSEASSSIISADSPGNSGKKGSSSNKL 260

Query: 4136 NRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMFFL 3957
            N  L  +  L     LPSEVR ++ +LWENE  LCS+ICDIQ+Q  K+SG    +S+FF 
Sbjct: 261  NLGLVGQRHL-----LPSEVREMVMQLWENEESLCSFICDIQQQQGKLSGNRMDYSIFFF 315

Query: 3956 ETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQ 3777
            ETILV PI+FR   +GG+SVMEH HT+LLGKVL++NIAL NA     + S+ I  WM+LQ
Sbjct: 316  ETILVNPIKFRAPTRGGNSVMEHPHTVLLGKVLESNIALRNA-----QPSKFISHWMELQ 370

Query: 3776 QSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAV 3597
            QSINVL+D K+  S S+K G  GICQ LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAV
Sbjct: 371  QSINVLFDGKS--STSKKAGVSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAV 428

Query: 3596 NEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMR 3417
            NEIGIPP+FAL+LTYPERVTPWNA KLR+AV+NGPDIHPGAT Y DSV++ +LP NKK R
Sbjct: 429  NEIGIPPYFALRLTYPERVTPWNATKLRNAVVNGPDIHPGATTYIDSVATMKLPLNKKAR 488

Query: 3416 IAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRV 3237
            +A+SRKLPSSR   ++ G+  + +FEGK+V RHLQDGDIVLVNRQPTLHKPSIMAH+VRV
Sbjct: 489  VALSRKLPSSRGATAEVGE-SQLDFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 547

Query: 3236 LPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVR 3057
            L GERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPT+GDTVR
Sbjct: 548  LKGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVR 607

Query: 3056 GLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVE 2877
            GLIQDHIVAAVL+T+K TFLT SEF+QLLYGSGVFA G  S+  + S KVS    +GL+ 
Sbjct: 608  GLIQDHIVAAVLLTLKRTFLTCSEFNQLLYGSGVFALGRHSYVSNSSQKVSGHAPDGLIN 667

Query: 2876 SILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDH 2697
             ILPA+WKPEPLWTGKQVI+ALLNHITRG APC VKNQ K+P  YF        +ED+D 
Sbjct: 668  PILPAIWKPEPLWTGKQVISALLNHITRGFAPCIVKNQTKLPSTYFTDNPAME-DEDEDQ 726

Query: 2696 NAEHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHG 2517
            NAE++ L+WKNELVRGVIDKAQFGK+GLVHTVQELYGS SAG LL+A SRLFT+FLQ HG
Sbjct: 727  NAENNFLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSESAGNLLTAFSRLFTMFLQIHG 786

Query: 2516 FTCGVDDLIILPNFDLQRKEKLEGEDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDR 2337
            FTCGVDDL+ILP++D++RKEKLE EDVGEEVHCDF+ FKPGQIG EELQLEIEKAIC DR
Sbjct: 787  FTCGVDDLMILPDYDVKRKEKLEQEDVGEEVHCDFINFKPGQIGREELQLEIEKAICRDR 846

Query: 2336 ESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQ 2157
            ESATA LDMKMKNKLT +LTTEGSQ+LKHLLT GLLKPFP+NCISVMTTTGAKGSTVNFQ
Sbjct: 847  ESATALLDMKMKNKLTMKLTTEGSQVLKHLLTDGLLKPFPQNCISVMTTTGAKGSTVNFQ 906

Query: 2156 QISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMA 1977
            QISAYLGQQELEGKRVPRMVSGKTLPSFPPWD+ +RAGGFITDRFLSGLRPQEYYFHCMA
Sbjct: 907  QISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFASRAGGFITDRFLSGLRPQEYYFHCMA 966

Query: 1976 GREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTS 1797
            GREGLVDTAVKTSRSGYLQRCL+KNLESLKV YDYTVRD+DGSI+QF YGEDGVD HKTS
Sbjct: 967  GREGLVDTAVKTSRSGYLQRCLVKNLESLKVGYDYTVRDADGSIIQFCYGEDGVDAHKTS 1026

Query: 1796 FLKNFKALEDNRETIWQKFQNHREFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSE 1617
            FLKNFKAL +N+ETI QKFQN  +FN YI +LPEGLEEEA  FI +    +S K      
Sbjct: 1027 FLKNFKALSNNQETIQQKFQNKHQFNFYIKKLPEGLEEEAMHFIQKAQTLSSVKQVVDHH 1086

Query: 1616 QLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVIAAQSVGEPSTQM 1437
            +                        F+ +V+QK+L+SL  +GEPVGVIAAQS+GEPSTQM
Sbjct: 1087 K------------------------FMRVVEQKFLSSLVPAGEPVGVIAAQSIGEPSTQM 1122

Query: 1436 TLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVRSKRDVVALVTKVKK 1257
            TLNTFHLAGRGEMNVTLGIPRLQEILMTA   I+TP+LTCPF + +SK + +++++ +KK
Sbjct: 1123 TLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIRTPMLTCPFLQRQSKPNALSVISNLKK 1182

Query: 1256 VSVADLLESMEVQLSINRRKVARTYKLKMKLKETEFVSSKDIKNTLEGVFLKEMEAQIEN 1077
            +++ADL+ESM+V +S +  KV R YKL+M+LK+TEFVS +D   TL+  FLKE+E  +EN
Sbjct: 1183 ITIADLIESMDVSISFH-PKVGRIYKLRMRLKDTEFVSLEDTYKTLKTSFLKELEDALEN 1241

Query: 1076 HLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRK-------XXXXXXXXXXXXXXXXX 918
            H++FL K++ I +F                     +                        
Sbjct: 1242 HVVFLKKVAVINDFASHSRFEALSEGEEDKASDGAQEAEEEGDDDGGDSDAGEDLDSDVQ 1301

Query: 917  XDTQKKTDEMNYGNESDVDHCEDELSADTKKGASDEEDHE---------DMDTSKDEGAE 765
               Q+  D+M+Y + SD +  E+E   D      D++D E         D D      +E
Sbjct: 1302 KRRQQARDDMDYEDASDSEQREEEEDLDKANAEEDDDDDENEWNEKCDDDHDDYDQRSSE 1361

Query: 764  HSGKEDETRDEQNANEGSTRSKKTD--------AKIRRAVKHVFERSSFEVHFKFTTEPH 609
             +  E      +  +  +  S+K D         +  RA+    E  S EVHFKFT+EPH
Sbjct: 1362 KNMVEKPILKGRKKSVAAITSEKIDLSTMPSTGKRENRAIYMEIEGLSLEVHFKFTSEPH 1421

Query: 608  VLLAQIAQKTAQKVFLKRS-GEMSQCRLVQYDPDEKTVIWNDTMKPRRGENKPQTGADDA 432
            VLLAQ+ QKTA+KV++K++ G+++QC+LVQYDPDEKTVIW+D  K  +     +   DDA
Sbjct: 1422 VLLAQVVQKTAKKVYVKKTGGKLNQCKLVQYDPDEKTVIWDDDKKKEKATKNGRKADDDA 1481

Query: 431  LYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVEAARATLIREVKQVFDIYG 252
             YWA+KASG D +SFW+M + LDL+RLY NN+H++L TYGVEAA AT+IRE+K VFDIYG
Sbjct: 1482 AYWAVKASGSDVESFWEMSDYLDLNRLYCNNIHSMLKTYGVEAASATIIREMKNVFDIYG 1541

Query: 251  VKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMSFETASKFIVEAALMGLADE 72
            VKIDYRHLSLI D+M H GGYRPMSR GSI +S+SPFLKMSFETASKFIVEAA+ GL D+
Sbjct: 1542 VKIDYRHLSLIGDHMAHAGGYRPMSRHGSIPDSVSPFLKMSFETASKFIVEAAIYGLRDD 1601

Query: 71   LETPSSRICLGLPVKVGT-GCFDL 3
            LE+PSSRICLGLPV+VGT G FDL
Sbjct: 1602 LESPSSRICLGLPVRVGTGGPFDL 1625


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1715 bits (4441), Expect = 0.0
 Identities = 915/1616 (56%), Positives = 1133/1616 (70%), Gaps = 59/1616 (3%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGV-- 4500
            HF+     V+ YVSQLE I +GD+ GAK L  +           PE+SDGSH S S    
Sbjct: 158  HFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSY----PEDSDGSHVSCSSTVN 213

Query: 4499 SSDGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVT 4320
            SS  +N   H K   W S    E+ SV++ FLK + + C NCK  +P++TKPTFGWFH+ 
Sbjct: 214  SSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMA 273

Query: 4319 GISKTEMRSNAIRSSRLDVTYSG-DEDRPSSEVLNTSDY--------------SLXXXXX 4185
            G+S  + R+N IR S+L+   S   E++ SSEV N +D               S+     
Sbjct: 274  GLSDAQTRANVIRGSKLERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDG 333

Query: 4184 XXXXXXXXXXXXKRDLNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQ 4005
                              E  ++   FSG LLPSEVR+I+ RLWENEA LCS+I DI ++
Sbjct: 334  IQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQE 393

Query: 4004 NSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHT 3825
                SG   G+SMFFLETILVPPI+FRP +KG  SVMEH  T+LLGKVLQANIALGNAH 
Sbjct: 394  RLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHA 453

Query: 3824 NSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRV 3645
            N++E S+II RWMDLQQSINVL+D KTA  Q Q++   GICQ LEKK+G+FRQ MMGKRV
Sbjct: 454  NNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRV 513

Query: 3644 NFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNY 3465
            NFACRSVISPDPYLAVNEIGIPP+FAL+LTYPE+VTPWN  KLR A+INGP+IHPGAT+Y
Sbjct: 514  NFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHY 573

Query: 3464 EDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNR 3285
             D +S+ +L  NKKMRI++SRKLPSSR VV+Q G+  ++EFEGKIV RHLQDGDIVLVNR
Sbjct: 574  VDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNR 633

Query: 3284 QPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIV 3105
            QPTLHKPSIMAH+VRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIV
Sbjct: 634  QPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 693

Query: 3104 NANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPG 2925
            NAN QYIVP++GD +RGLIQDHIV+AVL+T K+TFLTR +++QLLY SG+ ++G GS  G
Sbjct: 694  NANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIG 752

Query: 2924 DRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKN 2745
                KVSV+DSE  ++ +LPA+WKPEPLW+GKQVITA+LNHITRG  P T +  GK+P+ 
Sbjct: 753  KPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPRE 812

Query: 2744 YFAS-----ASYKNGEEDQDH---------NAEHDLLIWKNELVRGVIDKAQFGKYGLVH 2607
            YF S      S K  +   D          + E+ LLI KNELVRGVIDKAQF KYGLVH
Sbjct: 813  YFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVH 872

Query: 2606 TVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLE-GEDVGE 2430
             VQELYGSN+AGILLS LSRLFT+FLQ HGFTCGVDDL+I PN+D+ RK +L+  E++GE
Sbjct: 873  MVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGE 932

Query: 2429 EVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKH 2250
             VHC F+    G+I P +LQ+E+EK I S+ E+A   LD  MKN+L N LT   S++ K 
Sbjct: 933  LVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNEL-NELT---SKVNKD 988

Query: 2249 LLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFP 2070
            LL KGL+KPFPKNC+S+MTTTGAKGSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLP FP
Sbjct: 989  LLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFP 1048

Query: 2069 PWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESL 1890
            PWD  ARAGGFI+DRFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE L
Sbjct: 1049 PWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1108

Query: 1889 KVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYI 1710
            KVCYDYTVRDSDGSIVQF YG+DGVDVH+TSF+  F+AL  N E + +KF    +FN YI
Sbjct: 1109 KVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYI 1168

Query: 1709 SELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLEL 1530
             +LP+ L ++ ++FI           N                         K++ F+ L
Sbjct: 1169 QKLPKELRKKTKKFIEGFMEERQDFDN-----------------------MKKQKDFVNL 1205

Query: 1529 VKQKYLTSLAESGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1350
            VKQKY++SLA+ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA
Sbjct: 1206 VKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTA 1265

Query: 1349 PTKIKTPILTCPFSEVRSKRDVVALVTKVKKVSVADLLESMEVQL---SINRRKVARTYK 1179
               IKTPI+TCP    RSK D   L  K+KKV+VAD+ ESMEV +   ++   +    YK
Sbjct: 1266 ANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYK 1325

Query: 1178 LKMKLKETEF------VSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFM----- 1032
            LKMKL E         +S +D + TLE VF++E+E  I+NHL+ LSKISGIKNF+     
Sbjct: 1326 LKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRS 1385

Query: 1031 --XXXXXXXXXXXXXXXXXXTRKXXXXXXXXXXXXXXXXXXDTQKKTDEMNYGNESDVDH 858
                                                       Q+ +DEM+YG +S+ + 
Sbjct: 1386 MASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYG-DSEGEP 1444

Query: 857  CEDELSADTKKGASDEEDHEDMDTSKDEGAEHSGKEDETRDEQNANEGSTRSKKTDAKIR 678
             E E SA   +     ED  ++  +++ G     K+++++    +     +  KT+AK +
Sbjct: 1445 DEGEPSAGLTEEIDLVEDEVEISNNEEVGIS-DPKDEDSKVPSKSKSSKNKKAKTEAKRK 1503

Query: 677  ---RAVKHVFER--------SSFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCR 531
               RA+K  F+R        + FEVHF+FT EPH+LLAQIAQK A KV+++ SG++  C+
Sbjct: 1504 KRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQ 1563

Query: 530  LVQYDPDEKTVIWNDTMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRL 351
            ++  + D+      D   P++ EN P  G +     A++ +G+DF +FW M ++LD+  +
Sbjct: 1564 VIDCNKDQVIYYGRD---PKKRENIP--GEEKKKLPALQTAGVDFTAFWKMQDELDVRYV 1618

Query: 350  YSNNVHAVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRS 171
            YSNNVHA+LNT+GVEAARAT+I+EV  VF+ YGVK++ RHLSLIAD+MTH+GGYRPM+R 
Sbjct: 1619 YSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRH 1678

Query: 170  GSISESLSPFLKMSFETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            G I+ES+SPF KM+FETASKFIVEAA  G+ D LE+ S+RICLGLPVK+GTGCFDL
Sbjct: 1679 GGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDL 1734


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1713 bits (4437), Expect = 0.0
 Identities = 911/1602 (56%), Positives = 1127/1602 (70%), Gaps = 45/1602 (2%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGV-- 4500
            HF+     V+ YVSQLE I +GD+ GAK L  +           PE+SDGSH S S    
Sbjct: 109  HFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSY----PEDSDGSHVSCSSTVN 164

Query: 4499 SSDGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVT 4320
            SS  +N   H K   W S    E+ SV++ FLK + + C NCK  +P++TKPTFGWFH+ 
Sbjct: 165  SSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMA 224

Query: 4319 GISKTEMRSNAIRSSRLDVTYSG-DEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXKR 4143
            G+S  + R+N IR S+L+   +G D D   S +  T                        
Sbjct: 225  GLSDAQTRANVIRGSKLERPLNGVDTDETHSSIAPTDGIQ--------DTVTKRLERKGA 276

Query: 4142 DLNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMF 3963
                E  ++   FSG LLPSEVR+I+ RLWENEA LCS+I DI ++    SG   G+SMF
Sbjct: 277  QAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMF 336

Query: 3962 FLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRWMD 3783
            FLETILVPPI+FRP +KG  SVMEH  T+LLGKVLQANIALGNAH N++E S+II RWMD
Sbjct: 337  FLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMD 396

Query: 3782 LQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYL 3603
            LQQSINVL+D KTA  Q Q++   GICQ LEKK+G+FRQ MMGKRVNFACRSVISPDPYL
Sbjct: 397  LQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYL 456

Query: 3602 AVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPANKK 3423
            AVNEIGIPP+FAL+LTYPE+VTPWN  KLR A+INGP+IHPGAT+Y D +S+ +L  NKK
Sbjct: 457  AVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKK 516

Query: 3422 MRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIV 3243
            MRI++SRKLPSSR VV+Q G+  ++EFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAH+V
Sbjct: 517  MRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVV 576

Query: 3242 RVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDT 3063
            RVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QYIVP++GD 
Sbjct: 577  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDP 636

Query: 3062 VRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGL 2883
            +RGLIQDHIV+AVL+T K+TFLTR +++QLLY SG+ ++G GS  G    KVSV+DSE  
Sbjct: 637  IRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDE 695

Query: 2882 VESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFAS-----ASYKN 2718
            ++ +LPA+WKPEPLW+GKQVITA+LNHITRG  P T +  GK+P+ YF S      S K 
Sbjct: 696  MQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKG 755

Query: 2717 GEEDQDH---------NAEHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGIL 2565
             +   D          + E+ LLI KNELVRGVIDKAQF KYGLVH VQELYGSN+AGIL
Sbjct: 756  KDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGIL 815

Query: 2564 LSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLE-GEDVGEEVHCDFVKFKPGQI 2388
            LS LSRLFT+FLQ HGFTCGVDDL+I PN+D+ RK +L+  E++GE VHC F+    G+I
Sbjct: 816  LSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKI 875

Query: 2387 GPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNC 2208
             P +LQ+E+EK I S+ E+A   LD  MKN+L N LT   S++ K LL KGL+KPFPKNC
Sbjct: 876  DPVKLQVEVEKIILSNGEAAITRLDRMMKNEL-NELT---SKVNKDLLLKGLVKPFPKNC 931

Query: 2207 ISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITD 2028
            +S+MTTTGAKGSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLP FPPWD  ARAGGFI+D
Sbjct: 932  LSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISD 991

Query: 2027 RFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGS 1848
            RFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRDSDGS
Sbjct: 992  RFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGS 1051

Query: 1847 IVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNSYISELPEGLEEEARRF 1668
            IVQF YG+DGVDVH+TSF+  F+AL  N E + +KF    +FN YI +LP+ L ++ ++F
Sbjct: 1052 IVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKF 1111

Query: 1667 IHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGE 1488
            I           N                         K++ F+ LVKQKY++SLA+ GE
Sbjct: 1112 IEGFMEERQDFDN-----------------------MKKQKDFVNLVKQKYISSLAQPGE 1148

Query: 1487 PVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFS 1308
            PVGV+AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA   IKTPI+TCP  
Sbjct: 1149 PVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQ 1208

Query: 1307 EVRSKRDVVALVTKVKKVSVADLLESMEVQL---SINRRKVARTYKLKMKLKETEF---- 1149
              RSK D   L  K+KKV+VAD+ ESMEV +   ++   +    YKLKMKL E       
Sbjct: 1209 MGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPH 1268

Query: 1148 --VSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFM-------XXXXXXXXXXXX 996
              +S +D + TLE VF++E+E  I+NHL+ LSKISGIKNF+                   
Sbjct: 1269 TGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDG 1328

Query: 995  XXXXXXTRKXXXXXXXXXXXXXXXXXXDTQKKTDEMNYGNESDVDHCEDELSADTKKGAS 816
                                         Q+ +DEM+YG +S+ +  E E SA   +   
Sbjct: 1329 LAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYG-DSEGEPDEGEPSAGLTEEID 1387

Query: 815  DEEDHEDMDTSKDEGAEHSGKEDETRDEQNANEGSTRSKKTDAKIR---RAVKHVFER-- 651
              ED  ++  +++ G     K+++++    +     +  KT+AK +   RA+K  F+R  
Sbjct: 1388 LVEDEVEISNNEEVGIS-DPKDEDSKVPSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAI 1446

Query: 650  ------SSFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWN 489
                  + FEVHF+FT EPH+LLAQIAQK A KV+++ SG++  C+++  + D+      
Sbjct: 1447 LVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGR 1506

Query: 488  DTMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGV 309
            D   P++ EN P  G +     A++ +G+DF +FW M ++LD+  +YSNNVHA+LNT+GV
Sbjct: 1507 D---PKKRENIP--GEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGV 1561

Query: 308  EAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMS 129
            EAARAT+I+EV  VF+ YGVK++ RHLSLIAD+MTH+GGYRPM+R G I+ES+SPF KM+
Sbjct: 1562 EAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMT 1621

Query: 128  FETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            FETASKFIVEAA  G+ D LE+ S+RICLGLPVK+GTGCFDL
Sbjct: 1622 FETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDL 1663


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1600 bits (4143), Expect = 0.0
 Identities = 885/1617 (54%), Positives = 1087/1617 (67%), Gaps = 60/1617 (3%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHAS----HS 4506
            HFR ++ +VE  + QLE I +GD+ GAKRL    +         PEESD SH S    HS
Sbjct: 112  HFRMQRGQVEKCIKQLELIVKGDIVGAKRL----ESVSPSEALYPEESDLSHESCPTIHS 167

Query: 4505 GVSSDGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFH 4326
            GV     N  EH +   W S   TE+ SVLN FLK + KKC NC+  NP ITKPTFGWFH
Sbjct: 168  GVQC---NDGEHTRQQGWTSLQFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFH 224

Query: 4325 VTGISKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXK 4146
             +G+S   +R+N I   +L            SE+  T+D                    +
Sbjct: 225  TSGMSDASIRANVITGHQLGGLLG-------SEIEGTTDVEDAAEPGDQHSGTKKHKKKE 277

Query: 4145 RDLNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSM 3966
            R    E   +   FS  LLPSEV+  L  LW+NEA +CS+I D+Q+Q  +      G +M
Sbjct: 278  RKEVLEFTRQKSTFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQ--EFGKRKAGPAM 335

Query: 3965 FFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRWM 3786
            FFLETILVPPI+FRP  KGGDSVMEH  T+LL KVLQ+NI+LG+AH N  EHS+I+ RW+
Sbjct: 336  FFLETILVPPIKFRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINK-EHSKIVRRWL 394

Query: 3785 DLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPY 3606
            DLQQSIN L+DSKTA    Q+ G  GICQ LEKK+GLFRQ MMGKRVN+ACRSVISPDPY
Sbjct: 395  DLQQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPY 454

Query: 3605 LAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPANK 3426
            + VNEIGIPP FA+KLTYPERVTPWN  KLR+AVING + HPGAT+Y D +S  +LP  +
Sbjct: 455  IGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPAR 514

Query: 3425 KMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHI 3246
            K RI++SRKLPSSR  V+Q+GK  E EFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAH+
Sbjct: 515  KARISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHV 574

Query: 3245 VRVLPGERTLRMHYANCS-SYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKG 3069
            VRVL GE+TLRMHYANCS +YNADFDGDE+NVHFPQDE+SRAEAYNIVNAN Q++ P+ G
Sbjct: 575  VRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNG 634

Query: 3068 DTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSE 2889
            + +RGLIQDHIV+AVL+T K+TFL++ EF+QLLY SGV   GP S  G    KV    SE
Sbjct: 635  EPLRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSE 694

Query: 2888 GLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASASYKN--- 2718
              ++++ PA+WKP+PLWTGKQVITA+LNHIT    P TV+   K+P N+F S + ++   
Sbjct: 695  DEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPC 754

Query: 2717 GEEDQDHNA-------EHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLS 2559
             EE  D +A       E  +L++KNELVRGVIDK QFG+YGLVHTV EL GS++AGILLS
Sbjct: 755  QEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLS 814

Query: 2558 ALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKPG--QI 2388
             LSRLFT +LQ HGFTCGVDDL+IL N D +RK++LE  E  GE VH +F+  K    +I
Sbjct: 815  VLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKI 874

Query: 2387 GPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNC 2208
             P  +QL IEK I SD +SA A LD +M N+L    T   S ++ +LL+ GLLKP  KNC
Sbjct: 875  DPVAMQLNIEKTIRSDGDSALAYLDRQMSNELN---TKTSSGVISNLLSDGLLKPSGKNC 931

Query: 2207 ISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITD 2028
            IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP F PWD+ AR+GG+ITD
Sbjct: 932  ISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITD 991

Query: 2027 RFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGS 1848
            RFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD+DGS
Sbjct: 992  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGS 1051

Query: 1847 IVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNH-REFNSYISELPEGLEEEARR 1671
            +VQFYYGEDGVDVH+TSF+  FK L  N++ I+++       FNSYISELPE L+E+A R
Sbjct: 1052 VVQFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKEKADR 1111

Query: 1670 FIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESG 1491
            F+ +   +  G+  ++                       K      L+KQK+L SLA+ G
Sbjct: 1112 FLDDF--SIMGRIASN---------------------LVKREDLYNLMKQKFLLSLAQPG 1148

Query: 1490 EPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPF 1311
            EPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA   IKTPI+TCP 
Sbjct: 1149 EPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPL 1208

Query: 1310 SEVRSKRDVVALVTKVKKVSVADLLESMEVQL---SINRRKVARTYKLKMKL------KE 1158
             E R+  D   L  K++KV+VAD++ESMEV +   +I    V R YKLKMKL       +
Sbjct: 1209 QEGRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQ 1268

Query: 1157 TEFVSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFM---XXXXXXXXXXXXXXX 987
               +S +D + TLE VFL+E+E  I+NH+  LS+ISGIK+F+                  
Sbjct: 1269 YANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGD 1328

Query: 986  XXXTRKXXXXXXXXXXXXXXXXXXDTQKK----TDEMNYG-------NESDVDHCEDELS 840
                 +                  D QK+    TDEM+Y        NE +    E+E  
Sbjct: 1329 MSHREERDDDNDDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEELNEGESTASEEESG 1388

Query: 839  ADTKKGASDEEDHEDMDTSKDEGAEHS----------GKEDETRDEQNANEGSTRSKKTD 690
             +++    D E     D   D  A  +           K+       +  +   + KK  
Sbjct: 1389 FESEIDQGDNETEISNDVMLDNEASETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPK 1448

Query: 689  AKIRRAVKHVFERS--------SFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQC 534
            AK +  +   F+R+         FEVHFKFT EPH+LLA+IAQKTA+KV+++  G++ QC
Sbjct: 1449 AKRKSRISKDFDRAIFVEARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQC 1508

Query: 533  RLVQYDPDEKTVIWNDTMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSR 354
            R+   D  E  VI+       R + KP          A+ A+G+DF +FW M + LD+  
Sbjct: 1509 RVT--DCKESQVIYYGKDPKERVDLKPDVKEKVP---ALHATGVDFNTFWKMQDHLDVRY 1563

Query: 353  LYSNNVHAVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSR 174
            +YSNN+HA+L TYGVEAAR T+IRE+  VF  YG+ +  RHLSLIAD+MTHTGGYRPMSR
Sbjct: 1564 IYSNNIHAMLKTYGVEAARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSR 1623

Query: 173  SGSISESLSPFLKMSFETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
             G I+ES+SPF KMSFETASKFIVEAAL G  D LETPS+RICLGLPVK+GTG FDL
Sbjct: 1624 MGGIAESISPFSKMSFETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDL 1680


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1548 bits (4007), Expect = 0.0
 Identities = 837/1601 (52%), Positives = 1092/1601 (68%), Gaps = 44/1601 (2%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HFRA +  VEN  + LE I +G++A AK L       +++       +  SH+ ++    
Sbjct: 109  HFRAGESMVENCKTLLELILDGEIAKAKEL-------EEEWMNSKSRTKSSHSMYTYERK 161

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 4314
            +G+ +        W S   +E+ SV+ +FLK ++  C  C   +PKITKPTFGWFH+ G+
Sbjct: 162  NGQPET-------WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGL 214

Query: 4313 SKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXKRDLN 4134
            +  + R+NAIR S+     SG E   S E   T++ ++                   D++
Sbjct: 215  AGVQKRANAIRRSKPVSVSSGAEGVSSLEEETTTEATVEDF---------------EDVS 259

Query: 4133 RELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLE 3954
             E+  + +  SG LLPSEV++IL+RLW+NEA LCS+I DI +Q     G   G SMFFLE
Sbjct: 260  PEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGH---GNKAGHSMFFLE 316

Query: 3953 TILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQ 3774
            ++LVPPI+FRP AKGGDSVMEH  T+LL KVLQ+NI+LGN H N +EHS+I+  WMDLQQ
Sbjct: 317  SVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQ 376

Query: 3773 SINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVN 3594
            SIN+L+DSK+A    + +   GICQ LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVN
Sbjct: 377  SINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 436

Query: 3593 EIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRL--PANKKM 3420
            EIGIPP+FAL+LTYPERVT WN  KLR+A+INGP+ HPGAT+Y D +++ +L    ++K 
Sbjct: 437  EIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKS 496

Query: 3419 RIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVR 3240
            RI++SRKLPSSR VV   G   ++EFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAH+VR
Sbjct: 497  RISISRKLPSSRGVVVDQG-CDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVR 555

Query: 3239 VLPGERTLRMHYANCS-SYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDT 3063
            VL GE+T+RMHYANCS +YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ PT G+ 
Sbjct: 556  VLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEP 615

Query: 3062 VRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGL 2883
            +R LIQDHI++AVL+T K+TFL   EFSQLLY SG+  +   +       K+  +D +  
Sbjct: 616  IRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAE 675

Query: 2882 VESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQ 2703
            +  +LPAVWKPEPLWTGKQV+TALL+HIT+G  P  V+   K+P+ +F      N    +
Sbjct: 676  MLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKK 735

Query: 2702 DHNAEHD-----------LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSA 2556
              + + D           LLI+KNELVRGVIDKAQFG YGLVHTVQELYGSN+AG+LLS 
Sbjct: 736  KEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSV 795

Query: 2555 LSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLE-GEDVGEEVHCDFVKFKPGQ-IGP 2382
            +SRLFT+FLQ HGFTCGVDDL+++   D +R+++L+  E +GE+VH  F+K K G+ + P
Sbjct: 796  MSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDP 855

Query: 2381 EELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCIS 2202
              LQL IEK I  + E+A  +LD KM ++L  R  T  S++LK LL++GLLKP  KNCIS
Sbjct: 856  MTLQLNIEKTISYNGEAALTSLDRKMTSQLNER--TGNSKVLKDLLSEGLLKPSVKNCIS 913

Query: 2201 VMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRF 2022
            +MTT+GAKG T NFQQIS++LGQQ+LEGKRVPRMVSGKTLP FPPWD+ +RAGGFI DRF
Sbjct: 914  LMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRF 973

Query: 2021 LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIV 1842
            L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRD+DGS++
Sbjct: 974  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVI 1033

Query: 1841 QFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNH-REFNSYISELPEGLEEEARRFI 1665
            QF YGEDGVDVHKT+F+  F+AL  N++ +++   +   ++N +I+ELP  L E+   FI
Sbjct: 1034 QFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKG-EFI 1092

Query: 1664 HETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEP 1485
            +    N+  K       L                    +  F+ L++ KYL+SLA+ GEP
Sbjct: 1093 Y----NSLSKDKVPGLVL--------------------KEDFIRLLENKYLSSLAQPGEP 1128

Query: 1484 VGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSE 1305
            VGV+AAQS+GEPSTQMTLNTFH  GRGEMNVTLGI RLQEILMTA   IKTPI+TCP  E
Sbjct: 1129 VGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCPLKE 1188

Query: 1304 VRSKRDVVALVTKVKKVSVADLLESMEVQL---SINRRKVARTYKLKMKLKETE------ 1152
              S      L  K+KK++VAD++ESM V +   S  +R++   YKL++     E      
Sbjct: 1189 GYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHG 1248

Query: 1151 FVSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTR 972
             +S +D++NTLE VFL+E+E  IE  ++ LSKI+GIKNF+                   +
Sbjct: 1249 HISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSSSRQK 1308

Query: 971  KXXXXXXXXXXXXXXXXXXDTQKK-----TDEMNYGNESDVDHCEDELS----ADTKKGA 819
            +                     KK      DEM+Y ++S+ D    E S    ++  +G 
Sbjct: 1309 ENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGD 1368

Query: 818  SDEEDHEDM-DTSKDEGAEHSGK---EDETRDEQNANEGSTRSKKTDAKI--RRAVKHVF 657
              E  + DM +  KD  +E+  +     ++  ++   E S   KK  +++  +   + +F
Sbjct: 1369 EAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIF 1428

Query: 656  ---ERSSFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWND 486
               + + FEVHFKFT EPH LL+QI Q+ AQKV ++RSG++ QC+  Q    E  VI++ 
Sbjct: 1429 VEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQ--QITCKEGQVIYHG 1486

Query: 485  TMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVE 306
                 R   KP+   +     A++ SG+DFK+ W+M ++LD+  +YSN++HA+L TYGVE
Sbjct: 1487 NNLKERKNLKPE---EKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVE 1543

Query: 305  AARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMSF 126
            AARAT+IRE++ +F  YG+ ++ RHLSL+ADYMTH+GGYRPMSR G IS+S+SPF +M+F
Sbjct: 1544 AARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTF 1603

Query: 125  ETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            ETA KFIV+AAL G  D LETPSSRICLGLPVK+GTG FDL
Sbjct: 1604 ETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDL 1644


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1545 bits (3999), Expect = 0.0
 Identities = 839/1597 (52%), Positives = 1096/1597 (68%), Gaps = 40/1597 (2%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HFRA +  VEN  + LE I +G++A AK L       +++       +  SH+ ++    
Sbjct: 115  HFRAGESMVENCKTLLELILDGEIAKAKEL-------EEEWMNSKSRTKSSHSMYTYERK 167

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 4314
            +G+ +        W S   +E+ SV+ +FLK ++  C  C   +PKITKPTFGWFH+ G+
Sbjct: 168  NGQPET-------WTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGL 220

Query: 4313 SKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXKRDLN 4134
            +  + R+NAIR S+     SG E   S E   T++ ++                   D++
Sbjct: 221  AGVQKRANAIRRSKPVSVSSGAEGVSSLEEETTTEATVEDF---------------EDVS 265

Query: 4133 RELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLE 3954
             E+  + +  SG LLPSEV++IL+RLW+NEA LCS+I DI +Q     G   G SMFFLE
Sbjct: 266  PEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGH---GNKAGHSMFFLE 322

Query: 3953 TILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQ 3774
            ++LVPPI+FRP AKGGDSVMEH  T+LL KVLQ+NI+LGN H N +EHS+I+  WMDLQQ
Sbjct: 323  SVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQ 382

Query: 3773 SINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVN 3594
            SIN+L+DSK+A    + +   GICQ LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVN
Sbjct: 383  SINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 442

Query: 3593 EIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRL--PANKKM 3420
            EIGIPP+FAL+LTYPERVT WN  KLR+A+INGP+ HPGAT+Y D +++ +L    ++K 
Sbjct: 443  EIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKS 502

Query: 3419 RIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVR 3240
            RI++SRKLPSSR VV   G   ++EFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAH+VR
Sbjct: 503  RISISRKLPSSRGVVVDQG-CDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVR 561

Query: 3239 VLPGERTLRMHYANCS-SYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDT 3063
            VL GE+T+RMHYANCS +YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ PT G+ 
Sbjct: 562  VLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEP 621

Query: 3062 VRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGL 2883
            +R LIQDHI++AVL+T K+TFL   EFSQLLY SG+  +   +       K+  +D +  
Sbjct: 622  IRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAE 681

Query: 2882 VESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFA-----SASYKN 2718
            +  +LPAVWKPEPLWTGKQV+TALL+HIT+G  P  V+   K+P+ +       S   ++
Sbjct: 682  MLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFLILDEGNSKKKEH 741

Query: 2717 GEEDQDHNAEHD---LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSR 2547
             + D+   A  D   LLI+KNELVRGVIDKAQFG YGLVHTVQELYGSN+AG+LLS +SR
Sbjct: 742  TKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSR 801

Query: 2546 LFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLE-GEDVGEEVHCDFVKFKPGQ-IGPEEL 2373
            LFT+FLQ HGFTCGVDDL+++   D +R+++L+  E +GE+VH  F+K K G+ + P  L
Sbjct: 802  LFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTL 861

Query: 2372 QLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMT 2193
            QL IEK I  + E+A  +LD KM ++L  R  T  S++LK LL++GLLKP  KNCIS+MT
Sbjct: 862  QLNIEKTISYNGEAALTSLDRKMTSQLNER--TGNSKVLKDLLSEGLLKPSVKNCISLMT 919

Query: 2192 TTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSG 2013
            T+GAKG T NFQQIS++LGQQ+LEGKRVPRMVSGKTLP FPPWD+ +RAGGFI DRFL+G
Sbjct: 920  TSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTG 979

Query: 2012 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFY 1833
            LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRD+DGS++QF 
Sbjct: 980  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQ 1039

Query: 1832 YGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNH-REFNSYISELPEGLEEEARRFIHET 1656
            YGEDGVDVHKT+F+  F+AL  N++ +++   +   ++N +I+ELP  L E+   FI+  
Sbjct: 1040 YGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKG-EFIY-- 1096

Query: 1655 HGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGV 1476
              N+  K       L                    +  F+ L++ KYL+SLA+ GEPVGV
Sbjct: 1097 --NSLSKDKVPGLVL--------------------KEDFIRLLENKYLSSLAQPGEPVGV 1134

Query: 1475 IAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVRS 1296
            +AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTA   IKTPI+TCP  E  S
Sbjct: 1135 LAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYS 1194

Query: 1295 KRDVVALVTKVKKVSVADLLESMEVQL---SINRRKVARTYKLKMKLKETE------FVS 1143
                  L  K+KK++VAD++ESM V +   S  +R++   YKL++     E       +S
Sbjct: 1195 MDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHIS 1254

Query: 1142 SKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRKXX 963
             +D++NTLE VFL+E+E  IE  ++ LSKI+GIK F+                    +  
Sbjct: 1255 PEDLENTLETVFLEELEGLIEREMVLLSKINGIKXFVPDSQSKGSSEGDEVSSSRQEEMD 1314

Query: 962  XXXXXXXXXXXXXXXXDTQKK----TDEMNYGNESDVDHCEDELS----ADTKKGASDEE 807
                            D +K+     DEM+Y ++S+ D    E S    ++  +G   E 
Sbjct: 1315 DDDEGNDLDVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEI 1374

Query: 806  DHEDM-DTSKDEGAEHSGK---EDETRDEQNANEGSTRSKKTDAKI--RRAVKHVF---E 654
             + DM +  KD  +E+  +     ++  ++   E S   KK  +++  +   + +F   +
Sbjct: 1375 TNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAK 1434

Query: 653  RSSFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWNDTMKP 474
             + FEVHFKFT EPH LL+QI Q+ AQKV ++RSG++ QC+  Q    E  VI++     
Sbjct: 1435 ENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQ--QITCKEGQVIYHGNNLK 1492

Query: 473  RRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVEAARA 294
             R   KP+   +     A++ SG+DFK+ W+M ++LD+  +YSN++HA+L TYGVEAARA
Sbjct: 1493 ERKNLKPE---EKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARA 1549

Query: 293  TLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMSFETAS 114
            T+IRE++ +F  YG+ ++ RHLSL+ADYMTH+GGYRPMSR G IS+S+SPF +M+FETA 
Sbjct: 1550 TIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAG 1609

Query: 113  KFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            KFIV+AAL G  D LETPSSRICLGLPVK+GTG FDL
Sbjct: 1610 KFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDL 1646


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1544 bits (3998), Expect = 0.0
 Identities = 859/1635 (52%), Positives = 1079/1635 (65%), Gaps = 78/1635 (4%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HFRA+K EVE  VSQL+ I  GD+ GAKRL             D + +D S  S     S
Sbjct: 109  HFRAEKTEVERCVSQLKLIGNGDIVGAKRL-------------DSDSADASSYSDYNEGS 155

Query: 4493 DGENQDEHEKDAF----WDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFH 4326
                   H  +A     W S  L E+ SVLN FLK +  KC NC   NP ITKP FGW H
Sbjct: 156  QESGSIVHNSEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLH 215

Query: 4325 VTGISKTEMRSNAIRSSRLDVTYSG-------DEDRPSSE-------VLNTSDYSLXXXX 4188
            + G+   +MR N IR  ++  T+S        D D  SS         ++TS+       
Sbjct: 216  MNGMLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSE 275

Query: 4187 XXXXXXXXXXXXXKRDLNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQR 4008
                            +  E  ++ +LFSG LLPSEV+ I + LWENE  LCS I DIQ+
Sbjct: 276  GNGAKARKKKA----QVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQ 331

Query: 4007 QNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAH 3828
            Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T+LL KVLQANI+LGNA+
Sbjct: 332  QGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAY 388

Query: 3827 TNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGK 3651
            TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GICQ LEKK+G+FRQ MMGK
Sbjct: 389  TNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGK 447

Query: 3650 RVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGAT 3471
            RVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  KLR A+ING + HPGAT
Sbjct: 448  RVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGAT 507

Query: 3470 NYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLV 3291
            +Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EFEGKIV RHLQDGD+VLV
Sbjct: 508  HYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLV 567

Query: 3290 NRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYN 3111
            NRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYN
Sbjct: 568  NRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYN 627

Query: 3110 IVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSH 2931
            IVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF+QLLY SGV +    S 
Sbjct: 628  IVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSF 687

Query: 2930 PGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVP 2751
             G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+HITRG  P TV    K+P
Sbjct: 688  SGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIP 747

Query: 2750 KNYFASASYKNGEEDQDHNA--------------------EHDLLIWKNELVRGVIDKAQ 2631
            +++F +   KN +  ++ N                     E  +LI++N+LVRGVIDKAQ
Sbjct: 748  RDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQ 807

Query: 2630 FGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKL 2451
            F  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGVDDL+I+ + D++RK++L
Sbjct: 808  FADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQL 867

Query: 2450 EG-EDVGEEVHCDFVKFKPGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTT 2274
            E  E    E H +    K       ELQLEIE+ I  D E+A   LD KM + L N  ++
Sbjct: 868  EDCEKKVTEAHYELFGVKVN--SETELQLEIERTIRRDGETALTALDRKMISVL-NENSS 924

Query: 2273 EGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVS 2094
            +G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVS
Sbjct: 925  KG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVS 982

Query: 2093 GKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1914
            GKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC
Sbjct: 983  GKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1042

Query: 1913 LIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQN 1734
            LIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+  F+AL  N++ + +K  +
Sbjct: 1043 LIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCS 1102

Query: 1733 H-REFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAF 1557
               E +     LP+GL  +A +FI E             +  H+                
Sbjct: 1103 QLGEPDDSDKILPDGLRSKAEQFIRE----------EIKKYQHQK--------------- 1137

Query: 1556 TKERGFLELVKQKYLTSLAESGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1377
             K + FL L+K K+L+SLA+ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP
Sbjct: 1138 IKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1197

Query: 1376 RLQEILMTAPTKIKTPILTCPFSEVRSKRDVVALVTKVKKVSVADLLESMEVQL---SIN 1206
            RLQEILMTA   I+TP++TCP  + ++K D + L  K+KK++VAD+LESMEV +   +++
Sbjct: 1198 RLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVD 1257

Query: 1205 RRKVARTYKLKM------KLKETEFVSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGI 1044
               +   YKLKM      K  E   ++ KD ++ L+ VFL+E+E  I+NHL+ LSKISGI
Sbjct: 1258 NGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGI 1317

Query: 1043 KNFMXXXXXXXXXXXXXXXXXXTRK----------XXXXXXXXXXXXXXXXXXDTQKKTD 894
            K FM                    +                              Q+ TD
Sbjct: 1318 KKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTD 1377

Query: 893  EMNYGNESDVDHCEDELSADTKKGASDEEDHE--------DMDTSKDEGAEHS-----GK 753
            EM+Y ++S+V+  E    A  +      ED            D  KDE ++ S       
Sbjct: 1378 EMDYEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRS 1437

Query: 752  EDETRDEQNANEGSTRSKKTDAKI-----RRAVKHVFERSSFEVHFKFTTEPHVLLAQIA 588
              ++R+E+  +E   + KK  AK       RA+ +      FEVHFK   EPH+LLAQIA
Sbjct: 1438 NPKSREEKTGSE--PKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIA 1495

Query: 587  QKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWNDTMKPRRGENKPQTGADDALYWAMKAS 408
            +KTA+KV+++  G++ QCR+     ++      D  K +   +K +         A+  +
Sbjct: 1496 EKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEK-------IQALHTT 1548

Query: 407  GIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHL 228
            G+DF +FW M + +D+  LYSN++HA+LNTYGVEAAR T+IRE+  VF  YG+ ++ RHL
Sbjct: 1549 GVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHL 1608

Query: 227  SLIADYMTHTGGYRPMSRSGSISESLSPFLKMSFETASKFIVEAALMGLADELETPSSRI 48
            +LIAD+MTH+G YRPMSR G I+ES+SPF KMSFETASKFIVEAA  GL D LETPSSRI
Sbjct: 1609 TLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRI 1668

Query: 47   CLGLPVKVGTGCFDL 3
            CLGLPVK+GTG FDL
Sbjct: 1669 CLGLPVKMGTGSFDL 1683


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1544 bits (3997), Expect = 0.0
 Identities = 860/1633 (52%), Positives = 1080/1633 (66%), Gaps = 76/1633 (4%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HFRA+K EVE  VSQL+ I  GD+ GAKRL             D + +D S  S     S
Sbjct: 109  HFRAEKTEVERCVSQLKLIGNGDIVGAKRL-------------DSDSADASSYSDYNEGS 155

Query: 4493 DGENQDEHEKDAF----WDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFH 4326
                   H  +A     W S  L E+ SVLN FLK +  KC NC   NP ITKP FGW H
Sbjct: 156  QESGSIVHNSEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLH 215

Query: 4325 VTGISKTEMRSNAIRSSRLDVTYSG-------DEDRPSSE-------VLNTSDYSLXXXX 4188
            + G+   +MR N IR  ++  T+S        D D  SS         ++TS+       
Sbjct: 216  MNGMLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSE 275

Query: 4187 XXXXXXXXXXXXXKRDLNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQR 4008
                            +  E  ++ +LFSG LLPSEV+ I + LWENE  LCS I DIQ+
Sbjct: 276  GNGAKARKKKA----QVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQ 331

Query: 4007 QNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAH 3828
            Q     G   G+SMFFLETILVPPI+FR   KGGDSVMEH  T+LL KVLQANI+LGNA+
Sbjct: 332  QGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAY 388

Query: 3827 TNSAEHSRIIGR-WMDLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGK 3651
            TN+ + S+ + R WMDLQQS+N+L+DSKTA SQ  ++   GICQ LEKK+G+FRQ MMGK
Sbjct: 389  TNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGK 447

Query: 3650 RVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGAT 3471
            RVNFACRSVISPDPYLAVNEIGIPP+FAL+LTYPERVTPWN  KLR A+ING + HPGAT
Sbjct: 448  RVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGAT 507

Query: 3470 NYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLV 3291
            +Y D +S+ RLP ++K RI++SRKLPSSR  ++Q GK  ++EFEGKIV RHLQDGD+VLV
Sbjct: 508  HYVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLV 567

Query: 3290 NRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYN 3111
            NRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYN
Sbjct: 568  NRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYN 627

Query: 3110 IVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSH 2931
            IVNAN QY+ P+ G+ +R LIQDHIV+AVL+T ++TFL+R EF+QLLY SGV +    S 
Sbjct: 628  IVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSF 687

Query: 2930 PGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVP 2751
             G    KV V  SE  +  I+PA+ KP+PLWTGKQVI+++L+HITRG  P TV    K+P
Sbjct: 688  SGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIP 747

Query: 2750 KNYFASASYKNGEEDQDHNA--------------------EHDLLIWKNELVRGVIDKAQ 2631
            +++F +   KN +  ++ N                     E  +LI++N+LVRGVIDKAQ
Sbjct: 748  RDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQ 807

Query: 2630 FGKYGLVHTVQELYGSNSAGILLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKL 2451
            F  YGLVHTVQELYGSN+AGILLS  SRLFT+FLQ HGFTCGVDDL+I+ + D++RK++L
Sbjct: 808  FADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQL 867

Query: 2450 EG-EDVGEEVHCDFVKFK-PGQIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLT 2277
            E  E    E H +    K   +  P ELQLEIE+ I  D E+A   LD KM + L N  +
Sbjct: 868  EDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMISVL-NENS 926

Query: 2276 TEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMV 2097
            ++G  +L  LL++GL+K   +NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMV
Sbjct: 927  SKG--VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMV 984

Query: 2096 SGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1917
            SGKTLP F PWD+ ARAGGFI+DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR
Sbjct: 985  SGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1044

Query: 1916 CLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQ 1737
            CLIKNLE LK+ YD+TVRD+DGSIVQF YGEDG+DVH+TSF+  F+AL  N++ + +K  
Sbjct: 1045 CLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLC 1104

Query: 1736 NH-REFNSYISELPEGLEEEARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKA 1560
            +   E +     LP+GL  +A +FI E             +  H+               
Sbjct: 1105 SQLGEPDDSDKILPDGLRSKAEQFIRE----------EIKKYQHQK-------------- 1140

Query: 1559 FTKERGFLELVKQKYLTSLAESGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1380
              K + FL L+K K+L+SLA+ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGI
Sbjct: 1141 -IKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1199

Query: 1379 PRLQEILMTAPTKIKTPILTCPFSEVRSKRDVVALVTKVKKVSVADLLESMEVQL---SI 1209
            PRLQEILMTA   I+TP++TCP  + ++K D + L  K+KK++VAD+LESMEV +   ++
Sbjct: 1200 PRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAV 1259

Query: 1208 NRRKVARTYKLKM------KLKETEFVSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISG 1047
            +   +   YKLKM      K  E   ++ KD ++ L+ VFL+E+E  I+NHL+ LSKISG
Sbjct: 1260 DNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISG 1319

Query: 1046 IKNFMXXXXXXXXXXXXXXXXXXTRKXXXXXXXXXXXXXXXXXXDTQKKTDEMNYGNESD 867
            IK FM                                        ++ ++ E    ++ D
Sbjct: 1320 IKKFM-------------------------PDSQRNASNEMDEDVSEGRSRETKNDDDDD 1354

Query: 866  VDHCEDELSADTKKGASDEEDHEDMDTSKDEG--------AEHSGKED--------ETRD 735
             D  +DE  A+   GAS      ++D S+DE            +GK++        E R 
Sbjct: 1355 DDDADDEERAE-DLGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRS 1413

Query: 734  EQNANEGSTRS----KKTDAKI-----RRAVKHVFERSSFEVHFKFTTEPHVLLAQIAQK 582
               + E  T S    KK  AK       RA+ +      FEVHFK   EPH+LLAQIA+K
Sbjct: 1414 NPKSREEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEK 1473

Query: 581  TAQKVFLKRSGEMSQCRLVQYDPDEKTVIWNDTMKPRRGENKPQTGADDALYWAMKASGI 402
            TA+KV+++  G++ QCR+     ++      D  K +   +K +         A+  +G+
Sbjct: 1474 TAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEK-------IQALHTTGV 1526

Query: 401  DFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSL 222
            DF +FW M + +D+  LYSN++HA+LNTYGVEAAR T+IRE+  VF  YG+ ++ RHL+L
Sbjct: 1527 DFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTL 1586

Query: 221  IADYMTHTGGYRPMSRSGSISESLSPFLKMSFETASKFIVEAALMGLADELETPSSRICL 42
            IAD+MTH+G YRPMSR G I+ES+SPF KMSFETASKFIVEAA  GL D LETPSSRICL
Sbjct: 1587 IADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICL 1646

Query: 41   GLPVKVGTGCFDL 3
            GLPVK+GTG FDL
Sbjct: 1647 GLPVKMGTGSFDL 1659


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1533 bits (3968), Expect = 0.0
 Identities = 843/1601 (52%), Positives = 1070/1601 (66%), Gaps = 44/1601 (2%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HFRA  +EV+   SQLE I +GD+  AKRL  +    K     +P+ES      H G   
Sbjct: 109  HFRAPSKEVDIRTSQLELIMKGDIIRAKRLESIIP-GKSVDSFNPDES-----IHPGDGD 162

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 4314
            + +     +    W S   +E+ SVL + L K+ KKC  C   NPKI+KPTFGWFH+  +
Sbjct: 163  ESQCYSAEQLGENWTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVL 222

Query: 4313 SKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXKRD-- 4140
            S  E R++ IRS   + T                D SL                 KRD  
Sbjct: 223  SADETRADTIRSVESETT--------------NDDISLGGGDTTDVEDITSAGTAKRDKR 268

Query: 4139 ----LNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGF 3972
                L+ +L E+  L SGSLLPS+V+ IL  LWENEA LCSYI DIQ Q     G   G 
Sbjct: 269  KKEKLSYKLAEQNKL-SGSLLPSQVKGILELLWENEARLCSYINDIQDQGF---GKKAGH 324

Query: 3971 SMFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGR 3792
            SMFFLE I VPPI+FRP  KGGD+VMEH  T+LL KVLQ NI+LG+AH N ++ S+++ R
Sbjct: 325  SMFFLENIFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSKVLSR 384

Query: 3791 WMDLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPD 3612
            WMDLQQS+N+L+D+KTA+ +  ++   GICQ LEKK+G+FRQ MMGKRVNFACRSVISPD
Sbjct: 385  WMDLQQSVNMLFDNKTASGK--RDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPD 442

Query: 3611 PYLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPA 3432
            PYLAVNEIGIPP+FAL+L+YPERVTPWN  KLR+A++NGP+ HPGAT+Y D VS  +LP 
Sbjct: 443  PYLAVNEIGIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPP 502

Query: 3431 NKKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMA 3252
              K+    SRKLP+SR V+   GKI +HEFEGK+V RHL+DGD+VLVNRQPTLHKPSIMA
Sbjct: 503  KGKLLSLTSRKLPTSRGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMA 562

Query: 3251 HIVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTK 3072
            HIVRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT 
Sbjct: 563  HIVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTS 622

Query: 3071 GDTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDS 2892
            GD +R LIQDHIV+A L+T K+TFL+  EF+QLLY SGV  AG GS  G    KV + +S
Sbjct: 623  GDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNS 682

Query: 2891 EGLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASASYKNGE 2712
            E  +    PA+WKPEPLWTGKQVI+ALL +ITRG  P T +   K+P N+F +   K   
Sbjct: 683  ESEMFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKR 742

Query: 2711 EDQDHNAEHD------LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALS 2550
              +D + + D      LLI+KN+LVRGV+DKAQFG YG++HTVQELYGSN AG LLSALS
Sbjct: 743  YTEDTSKKKDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALS 802

Query: 2549 RLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKPGQ-IGPEE 2376
            RLFT FLQ HGFTCGVDDL++    D++R  +L+  E +G+ VH +F+  K    I P  
Sbjct: 803  RLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNIDPVT 862

Query: 2375 LQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVM 2196
            LQL IEK I S+ E+A  TLD KM + L +R +   S ILK LL++G+LKP  KNCIS+M
Sbjct: 863  LQLNIEKKIRSNGEAAL-TLDRKMTSNLNSRTS---SGILKKLLSEGILKPSGKNCISLM 918

Query: 2195 TTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLS 2016
            TT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP FPPWD + RAGGFI DRFL+
Sbjct: 919  TTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLT 978

Query: 2015 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQF 1836
             L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRD+DGSI+QF
Sbjct: 979  ALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQF 1038

Query: 1835 YYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNS-YISELPEGLEEEARRFIHE 1659
            +YGEDGVDVH+TSF+  F AL  N+E ++  +    + +S YI++LPE LE +A +F   
Sbjct: 1039 HYGEDGVDVHQTSFITEFGALSTNKELVFSNYCRQLDRSSPYINKLPEALEGKAEKF--- 1095

Query: 1658 THGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVG 1479
                 S + N  S +                     +  FL L++ KY++ LA+ GEPVG
Sbjct: 1096 -----SKQRNLGSME---------------------QADFLRLMEHKYVSCLAQPGEPVG 1129

Query: 1478 VIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVR 1299
            V+A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEILM A   IKTP +TCP    +
Sbjct: 1130 VLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDK 1189

Query: 1298 SKRDVVALVTKVKKVSVADLLESMEVQ---LSINRRKVARTYKLKMKL-KETEFVSSKDI 1131
            S +D + L  K+KK++VAD+++SM+V    +++   +V   YKL MKL K  ++    DI
Sbjct: 1190 SMKDAICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDI 1249

Query: 1130 -----KNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRKX 966
                 + TL   F++E+E  I+NH+  LSKISGIK F                   +   
Sbjct: 1250 TLDDWEETLRVNFVRELEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSESE 1309

Query: 965  XXXXXXXXXXXXXXXXXDTQ--------------KKTDEMNYGNESDVDHCEDELSADTK 828
                             DT+              + TDE++Y +  + +  + ELS + +
Sbjct: 1310 KKGQNNDDDDEDGGGVEDTEGYEDLGSDAQKRKLQGTDEVDYEDGPEEETHDGELSEEIE 1369

Query: 827  --KGASDEEDHED----MDTSKDEGAEHSGKEDETRDEQNANEGSTRSKKTDAKIRRAVK 666
              +  SD + +E+     D +  EG E   K     ++QN      +S+ T  K  RA+ 
Sbjct: 1370 GDEDGSDVDANENYNNVTDANNSEGLEKPSKSKTIDEKQNLKREKKKSEPTTKKYDRAIF 1429

Query: 665  HVFERSSFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWND 486
               +   FE+HF+FT EPH+LL QIAQ+TA+KV ++  G++ +C+ +     E  VI+  
Sbjct: 1430 VEAKGKHFEIHFRFTGEPHILLTQIAQRTAKKVCIQNFGKVGECKAITC--KESGVIYYG 1487

Query: 485  TMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVE 306
                +R E    + ++     A++ SG+ FK+FW++ +DLD+  +YSNNVHA+LN YGVE
Sbjct: 1488 KDGRKRIE---ISASEKEQIPALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVE 1544

Query: 305  AARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMSF 126
            AAR T+IREV+ VF  YG+ ++ RHL+LIAD+MTHTG YRPM+R+GSI++S SPF+KM F
Sbjct: 1545 AARETIIREVQNVFKSYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCF 1604

Query: 125  ETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            ETA  FIVEAA  G  D LETPS+RICLGLPVK+GTGC DL
Sbjct: 1605 ETAGNFIVEAAYHGQVDNLETPSARICLGLPVKMGTGCHDL 1645


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1512 bits (3914), Expect = 0.0
 Identities = 822/1598 (51%), Positives = 1068/1598 (66%), Gaps = 41/1598 (2%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HF+A + EVE   +QLE I +G++A AK L  +       +    + SDG+ +  S    
Sbjct: 109  HFQASRNEVELRANQLELIMKGNIAKAKNLDAIN------LDESADLSDGNDSQCSSDEQ 162

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 4314
             GEN         W S   +E+ SVL +FLKK  +KC NC  +NPKITKPTFGWFHV  +
Sbjct: 163  LGEN---------WTSLQFSEAMSVLRKFLKKEFRKCQNCGNINPKITKPTFGWFHVKAL 213

Query: 4313 SKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXKRDLN 4134
            S  + R+N I         SG +   +SE+++  D SL                   +  
Sbjct: 214  SAAQARANVI---------SGIDASLASEIIH-DDISLGNGDTTDVEDITSGDTANSNAK 263

Query: 4133 RELQ-EKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMFFL 3957
            R+ +  + +  SGSLLPS+V+ IL  LWENEA LC YI DIQ Q     G   G SMFFL
Sbjct: 264  RQNKLARHNKLSGSLLPSQVQGILELLWENEARLCLYISDIQGQGF---GKKAGHSMFFL 320

Query: 3956 ETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQ 3777
            + I VPPI+FRP  KG D V EHA T+LL +VL++NI+LG AH N ++ S ++ RWMDLQ
Sbjct: 321  DNIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMDLQ 380

Query: 3776 QSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAV 3597
            +S+N+L+D+KTA+ Q  K+   GICQ LEKK+G+FRQ MMGKRVN+ACRSVISPDPYLAV
Sbjct: 381  RSVNLLFDNKTASGQ--KDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAV 438

Query: 3596 NEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMR 3417
            NEIGIPP+FAL+LTYPERVTPWN  +LR+A++NGP+ HPGAT Y D  S+ +LP +++ R
Sbjct: 439  NEIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRSR 498

Query: 3416 IAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRV 3237
               SRKL SSR V+  +GKI ++EFEGK+V RHL+DGD+VLVNRQPTLHKPSIMAH+VRV
Sbjct: 499  SLTSRKLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRV 558

Query: 3236 LPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVR 3057
            L GE+T+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD +R
Sbjct: 559  LKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIR 618

Query: 3056 GLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVE 2877
             LIQDHIV+A L+T K+TFL+  EF+QLLY SGV   G G  PG    K+ + +S+  + 
Sbjct: 619  ALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMF 678

Query: 2876 SILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDH 2697
               PA++KPEPLWTGKQVI+ALL +IT+G  P TV+   K+P ++F +   +  +  +D 
Sbjct: 679  LFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDT 738

Query: 2696 NAEHD------LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTI 2535
            + + D      LLI++N+LVRGV+DKAQFG YG+VHTVQE YGSN+AGILLSALSRLFT 
Sbjct: 739  SIKKDEPDEDKLLIYRNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGILLSALSRLFTN 798

Query: 2534 FLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKPG-QIGPEELQLEI 2361
            FLQ HGFTCGVDDL++    D +R  +LE  E++G+ VH +F+    G  I P  +QL +
Sbjct: 799  FLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNV 858

Query: 2360 EKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGA 2181
            EK I S+ E+A   LD KM + L +R +T    +LK LL++G+LKP  KN IS+MTT+GA
Sbjct: 859  EKKIRSNGEAAITYLDRKMISNLNSRTST---GVLKVLLSEGILKPSGKNWISLMTTSGA 915

Query: 2180 KGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQ 2001
            KGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP F  WD + RAGGFI DRFL+ LRPQ
Sbjct: 916  KGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQ 975

Query: 2000 EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGED 1821
            EYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRD+DGSI+QF+YGED
Sbjct: 976  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGED 1035

Query: 1820 GVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNS-YISELPEGLEEEARRFIHETHGNT 1644
            GVDVH+TSF+  F+AL  N+E ++       + +S YI++LP+ L+ +A +FI +    +
Sbjct: 1036 GVDVHQTSFINKFEALSTNKELVYSNCCRELDKSSPYINKLPDALKGKAEKFILD----S 1091

Query: 1643 SGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVIAAQ 1464
            S K   S    H N                    FL L++ KY++SLA+ GEPVGV+A+Q
Sbjct: 1092 SSKQRNSGSMTHTN--------------------FLHLMEHKYVSSLAQPGEPVGVLASQ 1131

Query: 1463 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVRSKRDV 1284
            SVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  A   IKTP +TCP    +S  D 
Sbjct: 1132 SVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDA 1191

Query: 1283 VALVTKVKKVSVADLLESMEVQ---LSINRRKVARTYKLKMKLKETEF------VSSKDI 1131
            + L  K+KK++VAD++ESM+V    +++   ++   YKL MKL + +       V+ KD 
Sbjct: 1192 IRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDW 1251

Query: 1130 KNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRK------ 969
            + TL   F++ +E  IEN++  L+KISGI NF                            
Sbjct: 1252 EETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSNGKTNDDDDDD 1311

Query: 968  XXXXXXXXXXXXXXXXXXDTQKKTDEMNYGNESDVDHCEDELSADTKKGASDEEDHEDMD 789
                                ++  D+++Y +  + +  ED   ++  +G  D +D+E + 
Sbjct: 1312 GDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDNEYVK 1371

Query: 788  TSKDEGAEHSGKEDETRDEQNANEG----------------STRSKKTDAKIRRAVKHVF 657
               D   +  GK DE   +   NE                 +++S+    K  R V   F
Sbjct: 1372 DDGDGKDDEDGKGDEDGSDIEVNENDKKVTLGANYSQGPEENSKSQPVSKKFDRRVYVKF 1431

Query: 656  ERSSFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWNDTMK 477
            E+  FE+HFKFT EPH+LLAQIAQKTA+KV ++  G++ QC+ +     E  VI+     
Sbjct: 1432 EKRHFEIHFKFTGEPHILLAQIAQKTAEKVCIQNFGKVGQCKAITC--KESGVIYYGEDD 1489

Query: 476  PRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVEAAR 297
             +R E  P +  +     A++ SGI FKSFW+M +DL++  +YSNNVHA+L+TYGVEAA+
Sbjct: 1490 SKR-EEIPSSVKEKIP--ALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAK 1546

Query: 296  ATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMSFETA 117
             T+IREV+ VF  YG+ ++ RHL LIAD+MTH+G YRPMSR GSI++S SPFLK+ FETA
Sbjct: 1547 ETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETA 1606

Query: 116  SKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            S FIVEAA  G  D L++PS+RICLGLPVK+GTGC +L
Sbjct: 1607 SNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHEL 1644


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1510 bits (3909), Expect = 0.0
 Identities = 820/1606 (51%), Positives = 1068/1606 (66%), Gaps = 49/1606 (3%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HF+A ++EVE   +QLE I +G++A AK L  +       +    +  DG  +  S    
Sbjct: 109  HFQASRKEVELRANQLELIMKGNIAKAKNLDEIN------LDESADLCDGDDSQCSSAEQ 162

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 4314
             GEN         W S   +E+ SVL +FLKK  +KC NC  +NPKIT PTFGWFHV  +
Sbjct: 163  LGEN---------WTSLQFSEAMSVLRKFLKKEYRKCQNCGYINPKITIPTFGWFHVKAL 213

Query: 4313 SKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXKRDLN 4134
            S  + R+N I         SG++   +SE+++  D SL                   +  
Sbjct: 214  SAAQARANVI---------SGNDVSLASEIIH-DDISLGNGDTTDVEDITSGDIANSNAK 263

Query: 4133 RELQEK---ADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMF 3963
            R  +EK   +   +GSLLPS+V+ IL  LWEN+A LC YI DIQ       G   G SMF
Sbjct: 264  RHNKEKQISSHTLAGSLLPSQVQRILELLWENDARLCLYISDIQGLGI---GKKAGHSMF 320

Query: 3962 FLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRWMD 3783
            FLE I VPPI+FRP  KG D V EHA T+LL +VL++NI+LG AH N ++ S ++ RWMD
Sbjct: 321  FLENIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMD 380

Query: 3782 LQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYL 3603
            LQ+S+N+L+D+KTA+ +SQK+   GICQ LEKK+G+FRQ MMGKRVN+ACRSVISPDPYL
Sbjct: 381  LQRSVNLLFDNKTASGESQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYL 440

Query: 3602 AVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPANKK 3423
            AVNEIGIPP+FAL+LTYPERVTPWN  +LR+A++NGP+ HPGAT Y D  S+ +LP +++
Sbjct: 441  AVNEIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRR 500

Query: 3422 MRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIV 3243
             R   SR+L SSR V+  +GKI ++EFEGK+V RHL+DGD+VLVNRQPTLHKPSIMAH+V
Sbjct: 501  SRSLTSRRLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVV 560

Query: 3242 RVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDT 3063
            RVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD 
Sbjct: 561  RVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDP 620

Query: 3062 VRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGL 2883
            +R LIQDHIV+A L+T K+TFL+  EF+QLLY SGV   G G  PG    K+ + +S+  
Sbjct: 621  IRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSE 680

Query: 2882 VESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQ 2703
            +    PA++KPEPLWTGKQVI+ALL +IT+G  P TV+   K+P ++F +   +  +  +
Sbjct: 681  MFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTK 740

Query: 2702 DHNAEHD------LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLF 2541
            D + + D      LLI+KN+LVRGV+DKAQFG YG+VHTVQE YGSN+AG LLSALSRLF
Sbjct: 741  DTSIKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALSRLF 800

Query: 2540 TIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKPG-QIGPEELQL 2367
            T FLQ HGFTCGVDDL++    D +R  +LE  E++G+ VH +F+    G  I P  +QL
Sbjct: 801  TNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQL 860

Query: 2366 EIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTT 2187
             +EK I S+ E+A   LD KM + L +R +   S +LK LL++G+LKP  KN IS+MTT+
Sbjct: 861  NVEKKIRSNGEAAITYLDRKMISNLNSRTS---SGVLKELLSEGILKPSGKNWISLMTTS 917

Query: 2186 GAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLR 2007
            GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP F  WD + RAGGFI DRFL+ LR
Sbjct: 918  GAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALR 977

Query: 2006 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYG 1827
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRD+DGSI+QF+YG
Sbjct: 978  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYG 1037

Query: 1826 EDGVDVHKTSFLKNFKALEDNRETIWQK-FQNHREFNSYISELPEGLEEEARRFIHETHG 1650
            EDGVDVH+TSF+  F+AL  N+E ++    +   E + YI++LP+ L+ +A +FI +   
Sbjct: 1038 EDGVDVHQTSFINKFEALSTNKELVYSNCCRELDESSPYINKLPDALKGKAEKFIRD--- 1094

Query: 1649 NTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVIA 1470
             +S K   S    H N                    FL+L++ KY++SLA+ GEPVGV+A
Sbjct: 1095 -SSSKQRNSGSMTHTN--------------------FLQLMEHKYVSSLAQPGEPVGVLA 1133

Query: 1469 AQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVRSKR 1290
            +QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  A   IKTP +TCP    +S  
Sbjct: 1134 SQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSME 1193

Query: 1289 DVVALVTKVKKVSVADLLESMEVQ---LSINRRKVARTYKLKMKLKETEF------VSSK 1137
            D + L  K+KK++VAD++ESM+V    +++   ++   YKL MKL + +       V+ K
Sbjct: 1194 DAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLK 1253

Query: 1136 DIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRK---- 969
            D + TL   F++ +E  IEN++  L+KISGI NF                          
Sbjct: 1254 DWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSNGKTNDDDD 1313

Query: 968  ----XXXXXXXXXXXXXXXXXXDTQKKTDEMNYGNESDVDHCEDELSADTKKGASDEEDH 801
                                    ++  D+++Y +  + +  ED   ++  +G  D +D+
Sbjct: 1314 DDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDN 1373

Query: 800  EDMDTSKDEGAEHSGKEDETRDEQNANEG----------------STRSKKTDAKIRRAV 669
            E +    D   +  GK DE   +   NE                 +++S+    K  R V
Sbjct: 1374 EHVKDDGDGKDDEDGKGDEDGSDIEVNENDKKVTLGVNYSQGPEENSKSQPVSKKFDRRV 1433

Query: 668  KHVFERSSFEVHFKFTTEPHVLLAQ----IAQKTAQKVFLKRSGEMSQCRLVQYDPDEKT 501
               FE+  FE+HFKFT EPH+LLAQ    IAQKTA+KV ++  G++ QC+ +     E  
Sbjct: 1434 YVKFEKRHFEIHFKFTDEPHILLAQLLSTIAQKTAEKVCIQNFGKVGQCKAITC--KESG 1491

Query: 500  VIWNDTMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLN 321
            VI+      +R E  P +  +     A++ SGI FKSFW+M +DL++  +YSNNVHA+L+
Sbjct: 1492 VIYYGEDDSKR-EEIPSSVKEKIP--ALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILS 1548

Query: 320  TYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPF 141
            TYGVEAA+ T+IREV+ VF  YG+ ++ RHL LIAD+MTH+G YRPMSR GSI++S SPF
Sbjct: 1549 TYGVEAAKETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPF 1608

Query: 140  LKMSFETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            LK+ FETAS FIVEAA  G  D L++PS+RICLGLPVK+GTGC +L
Sbjct: 1609 LKICFETASNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHEL 1654


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1508 bits (3903), Expect = 0.0
 Identities = 829/1593 (52%), Positives = 1052/1593 (66%), Gaps = 36/1593 (2%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HF A ++EVE   SQ E I +GD+  AK L          I +D     G      GV  
Sbjct: 109  HFHASRKEVEMRTSQFELIMKGDIIRAKSLD--------SIISDESNHSGDGDESQGVEQ 160

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 4314
             GEN         W S   +E+ SVL +FL ++ KKC NC  VNP+I+KPTFGWFH+  +
Sbjct: 161  LGEN---------WSSLQFSEAMSVLRKFLLRKYKKCQNCGVVNPRISKPTFGWFHMNVL 211

Query: 4313 SKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXKRDLN 4134
            S  E R+N +R+               SE +N  D SL                 KRD  
Sbjct: 212  SDDEARANTMRALE-------------SETIN-DDMSLGGGETTEEEDITSTGTAKRDKR 257

Query: 4133 RELQEKADL-----FSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFS 3969
            ++ +  + L      SGSLLPS+V+ IL  LWENEA LCSYI DIQ Q     G   G S
Sbjct: 258  KKGKLSSKLAAQNKLSGSLLPSQVKGILELLWENEARLCSYISDIQDQGF---GKKAGHS 314

Query: 3968 MFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRW 3789
            MFFLE I VPPI+FRP  KGGD VMEH  T+LL KVLQ NI+LG+AH N  + S+++ RW
Sbjct: 315  MFFLENIFVPPIKFRPPTKGGDDVMEHPQTVLLTKVLQGNISLGDAHINKLDPSKVLSRW 374

Query: 3788 MDLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDP 3609
            MDLQQS+N+L+D+KT+    Q     GICQ LEKK+G+FRQ MMGKRVNFACRSVISPDP
Sbjct: 375  MDLQQSVNLLFDNKTSG---QGEVAAGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDP 431

Query: 3608 YLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPAN 3429
            YLAVNEIGIPP+FAL+L+YPERVTPWN   LR+A++NGP  HPGAT+Y D  ++ +LP N
Sbjct: 432  YLAVNEIGIPPYFALRLSYPERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPN 491

Query: 3428 KKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAH 3249
             K+   +SRKLPSSR V+   GKI + EFEGKIV RHL+DGD+VLVNRQPTLHKPSIMAH
Sbjct: 492  GKLLSFISRKLPSSRGVILDHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAH 551

Query: 3248 IVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKG 3069
            +VRVL GE+T+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT G
Sbjct: 552  VVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSG 611

Query: 3068 DTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSE 2889
            D +R LIQDHIV+A L+T K+TF+T   F QLLY SGV   G GS  G    KV + +SE
Sbjct: 612  DPIRALIQDHIVSAALLTKKDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTNSE 671

Query: 2888 GLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFAS--ASYKNG 2715
              +    PA+WKPEPLWTGKQVI+ALL +ITR   P TV+   K+P N+F +     K  
Sbjct: 672  FEMFLFPPAIWKPEPLWTGKQVISALLYYITRDSPPFTVEKNAKIPSNFFKTQVRDGKRH 731

Query: 2714 EEDQDHNA-----EHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALS 2550
              D+  N      E  LLI+KN+LVRGV+DKAQFG YG++HTVQELYGS  AG LLSALS
Sbjct: 732  TRDKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALS 791

Query: 2549 RLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKPGQ-IGPEE 2376
            RLFT FLQ HGFTCGVDDL+I    D++R ++L   E++G+ VH +F+       I P  
Sbjct: 792  RLFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIIDPIT 851

Query: 2375 LQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVM 2196
            LQL IEK I S+ E+A   LD KM + L +R +   S ILK LL+ G+LKP  KNCIS+M
Sbjct: 852  LQLNIEKKIRSNGEAALTYLDRKMTSNLNSRTS---SGILKDLLSDGILKPSGKNCISLM 908

Query: 2195 TTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLS 2016
            TT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP F PWD + RAGGFI DRFL+
Sbjct: 909  TTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLT 968

Query: 2015 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQF 1836
            GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRD+DGSI+QF
Sbjct: 969  GLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQF 1028

Query: 1835 YYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNHREFNS-YISELPEGLEEEARRFIHE 1659
            +YGEDGVDVH TSF+  F+AL  N+E ++       + +S YI++LP+ L+E+A  F  +
Sbjct: 1029 HYGEDGVDVHHTSFINKFEALSTNKELVYGNCCRQLDRSSPYINKLPDALKEKAENFFRD 1088

Query: 1658 THGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVG 1479
                +  + N  S                      K   FL+L++ KY++ LA+ GE VG
Sbjct: 1089 ----SLKQRNLGS---------------------LKRAEFLKLMEHKYVSCLAQPGESVG 1123

Query: 1478 VIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVR 1299
            V+A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEI+M A   IKTP +TCP    +
Sbjct: 1124 VLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRSNK 1183

Query: 1298 SKRDVVALVTKVKKVSVADLLESMEVQ---LSINRRKVARTYKLKMKL-KETEF-----V 1146
            S  + + L  K+KK++VAD+++SM+V    +S+   +V   YKL MKL K  ++     +
Sbjct: 1184 SMEEAICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYSDI 1243

Query: 1145 SSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRK- 969
            + +D ++TL   F++E+E  IENH+  LSKISGIK F                     + 
Sbjct: 1244 TLEDWEDTLRISFVRELEDAIENHMALLSKISGIKKFKTDPQSHSNSSEDAHGNGSESET 1303

Query: 968  -------XXXXXXXXXXXXXXXXXXDTQKK----TDEMNYGNESDVDHCEDELSADTKKG 822
                                     D QK+    TDE++Y +  + +  +  LS + +  
Sbjct: 1304 KGKSNDDDDDDDVVEDTEGYEDLGSDAQKRKRQGTDEVDYEDGPEEETHDGVLSEEIEND 1363

Query: 821  ASDEEDHEDMDTSKDEGAEHSGKEDETRDEQNANEGSTRSKKTDAKIRRAVKHVFERSSF 642
              + +D+  +D S  EG +   +     ++ +      +S+ T  K  RAV    +   F
Sbjct: 1364 EDNVDDNMTLDASDSEGLDELSESKSIFEKDSLKREKKKSRPTTRKYDRAVFVKAKGMHF 1423

Query: 641  EVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWNDTMKPRRGE 462
            ++HFKFT EP +LLA+IA ++A+KV ++ SG + +C+ V            D+   R+ +
Sbjct: 1424 QIHFKFTGEPDILLAEIALRSAKKVCIQNSGRVGECKAVTCKESGVMYYGEDS---RKRD 1480

Query: 461  NKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVEAARATLIR 282
            + P +  +     A++ SG+ FK+FW++ +DLD+  +YSNNVHA+LN YGVEAAR T+IR
Sbjct: 1481 DIPASVKEKIP--ALQTSGVHFKTFWELQDDLDVRYIYSNNVHAMLNAYGVEAARETIIR 1538

Query: 281  EVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMSFETASKFIV 102
            EV+ VF  YG+ ++ RHL+LIAD+MTH+GGYRPM+R+GSI++  SPF+KM FETASKFIV
Sbjct: 1539 EVQNVFKSYGISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTSPFIKMCFETASKFIV 1598

Query: 101  EAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            EAA  G  D LETPSSRICLGLPVK+GTGC DL
Sbjct: 1599 EAAYHGQVDNLETPSSRICLGLPVKMGTGCHDL 1631


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1473 bits (3814), Expect = 0.0
 Identities = 813/1586 (51%), Positives = 1073/1586 (67%), Gaps = 29/1586 (1%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            +FRA ++EV+   SQLE I +G+++ AK LG +    K     D  + D   +  SG   
Sbjct: 110  YFRASRDEVKRRASQLELILKGNISKAKSLGEI----KLNETIDSVDDDDDDSQWSGAEQ 165

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHVTGI 4314
             GE+         W S   +E+ SV+ EFL K  KKC NC  ++PKITKPTFG F+V  +
Sbjct: 166  LGES---------WTSLQFSEAMSVIYEFLAKDYKKCLNCGCISPKITKPTFGRFNVKAL 216

Query: 4313 SKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDYSLXXXXXXXXXXXXXXXXXKRDLN 4134
            S  + R+N I S++     + +ED  S    N++  +                   + L+
Sbjct: 217  SSVQARANVISSAKAADVQADEEDITSGGAGNSNGNN-------------------QILS 257

Query: 4133 RELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLE 3954
             +L E++ L SGSLLPS+V+ +++ LW+NE+ LCS+I DIQ Q     G   G SMFFLE
Sbjct: 258  IKLVEQSSL-SGSLLPSQVQEMIKLLWKNESRLCSHISDIQDQGF---GKKAGHSMFFLE 313

Query: 3953 TILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQ 3774
             I VPPI+FRP  K GD+V EH  T+LL KVL++NI+L +AH   ++   I+ RW DLQ 
Sbjct: 314  NIFVPPIKFRPPLKAGDNVAEHPQTVLLSKVLESNISLADAHRTKSDAYYILRRWQDLQG 373

Query: 3773 SINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVN 3594
            S+N+L+D+KT+  +SQK+   GICQ L+KK+G+FRQ MMGKRVN+ACRSVISPDPYLAVN
Sbjct: 374  SVNLLFDNKTS-LRSQKDA-SGICQLLDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVN 431

Query: 3593 EIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRI 3414
            EIGIPP+FAL+LTYPERVTPWN+ KL  A++NGPD HPGA  Y D  S+ RL  +K +R 
Sbjct: 432  EIGIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRS 491

Query: 3413 AVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVL 3234
            + SR+L SSR V+   GKI EHEFEGK+V RHL+DGD+VLVNRQPTLHKPSIMAH+VRVL
Sbjct: 492  STSRRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVL 551

Query: 3233 PGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRG 3054
             GE+T+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD +R 
Sbjct: 552  KGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRA 611

Query: 3053 LIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVES 2874
            LIQDHIV+A L+T K+TFL+  EF+QLLY SGV   G GS       KV + +SE  +  
Sbjct: 612  LIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQKVLMSNSESEMFL 671

Query: 2873 ILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHN 2694
              PA++KPEPLWTGKQVI+ALL +IT+G  P TV+   K+P ++F + + +  +  +D +
Sbjct: 672  FPPAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKNAKIPSSFFKTQTGEIKKHTKDTS 731

Query: 2693 AEHD-----LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIFL 2529
             + D     LLI++N+LVRGV+DKAQFG YG+VHTVQE YGSN+AGILLSALSRLFT FL
Sbjct: 732  RKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSALSRLFTNFL 791

Query: 2528 QFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKPGQ-IGPEELQLEIEK 2355
            Q HGFTCGVDDL+I    D +R  +LE  E++G+ VH +F+     + I P  +QL +EK
Sbjct: 792  QMHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFIGVMESENIDPITMQLNVEK 851

Query: 2354 AICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAKG 2175
             I S+ E+A   LD KM + L +R +   S +LK LL+KG LKP  KN IS+MTT+GAKG
Sbjct: 852  KIRSNGEAAITYLDRKMISNLNSRTS---SGVLKELLSKGSLKPSGKNWISLMTTSGAKG 908

Query: 2174 STVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEY 1995
            S VNFQQIS++LGQQELEGKRVPRMVSGKTLP FP WD + RAGGFI DRFL+ LRPQEY
Sbjct: 909  SMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQEY 968

Query: 1994 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGV 1815
            YFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYD+TVRDSDGSI+QF+YGEDGV
Sbjct: 969  YFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDGV 1028

Query: 1814 DVHKTSFLKNFKALEDNRETIWQKFQNHREFNS-YISELPEGLEEEARRFIHETHGNTSG 1638
            DVH+TSF+  F+AL  N+E I+       + +S YI++LP+ L+ +A  FI +    +S 
Sbjct: 1029 DVHQTSFINKFEALSINKELIYSNCCRQLDRSSPYINKLPDALKGKAENFIRDF---SSK 1085

Query: 1637 KHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVIAAQSV 1458
            + N+SS                      KE  FL++++ KY++SLA+ GEPVGV+A+QSV
Sbjct: 1086 QRNSSS---------------------MKEADFLQVMEHKYVSSLAQPGEPVGVLASQSV 1124

Query: 1457 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVRSKRDVVA 1278
            GEP+TQMTLNTFHLAGRGEMNVTLGIPRL EI++ A   IKTP +TCP    +S  D + 
Sbjct: 1125 GEPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPNKSMEDAIR 1184

Query: 1277 LVTKVKKVSVADLLESMEVQ---LSINRRKVARTYKLKMKLKETEF------VSSKDIKN 1125
            L  K+KK++VAD++ESM+V    +++   ++   YKL MKL + +       V+ +D + 
Sbjct: 1185 LADKMKKITVADIIESMKVSVVPVAVKEGRICSIYKLTMKLHKPKHYPKYTDVTLEDWEE 1244

Query: 1124 TLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRK-------X 966
            TL   F++E+E  IENH+  L++ISGIK+F                   + +        
Sbjct: 1245 TLRVGFVRELEDAIENHISLLARISGIKDFQGKSNSSNGLDNDHSNESASNQNGQTDDDD 1304

Query: 965  XXXXXXXXXXXXXXXXXDTQKKTDEMNYGNESDVDHCEDELSADTKKGASDEEDHEDMDT 786
                               Q+ TDE++Y +  + +  + E S D +  + D +D ED D 
Sbjct: 1305 EVGDTEDAEEDGFDAQKSKQRATDEVDYDDGPEEETHDGEKSEDVEV-SEDGKDDED-DN 1362

Query: 785  SKDEGAEHSGKEDETRDEQNANEGSTRSKKT--DAKIRRAVKHVFERSS---FEVHFKFT 621
              +   + S  E    D+    E +++SKK   +   ++  + V+ ++    FE+HFKF 
Sbjct: 1363 GVEVNGDDSDIEVNDSDKNVTLEETSKSKKRKFEPASKKYDRRVYVKAGGMRFEIHFKFI 1422

Query: 620  TEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVIWNDTMKPRRGENKPQTGA 441
             EPH+LLAQIAQ+TA+KV ++  G++ QC+ +     E  VI+      +R ++ P +  
Sbjct: 1423 GEPHILLAQIAQRTAEKVCIQNFGKVGQCKAITC--KESGVIYYGEDDSKR-DDIPSSVK 1479

Query: 440  DDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTYGVEAARATLIREVKQVFD 261
            +     A++ SGI FK+FW+M +DL +  +YSN+VHA+L  YGVEAA+  +IREV+ VF 
Sbjct: 1480 EKIP--ALQTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEVIIREVQNVFK 1537

Query: 260  IYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLKMSFETASKFIVEAALMGL 81
             YG+ ++ RHL LIAD+MTH+G YRP++RSG I++S SPF+K+S+ETAS FIVEAA  G 
Sbjct: 1538 SYGISVNIRHLMLIADFMTHSGSYRPLTRSG-IADSTSPFVKISYETASNFIVEAARHGQ 1596

Query: 80   ADELETPSSRICLGLPVKVGTGCFDL 3
             D LETPSSRICLGLPVK+GTGC DL
Sbjct: 1597 VDTLETPSSRICLGLPVKMGTGCIDL 1622


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score = 1463 bits (3788), Expect = 0.0
 Identities = 793/1434 (55%), Positives = 996/1434 (69%), Gaps = 61/1434 (4%)
 Frame = -3

Query: 4121 EKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILV 3942
            ++ +LFSG LLPSEV+ I + LWENE  LCS I DIQ+Q     G   G+SMFFLETILV
Sbjct: 2    KQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILV 58

Query: 3941 PPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGR-WMDLQQSIN 3765
            PPI+FR   KGGDSVMEH  T+LL KVLQANI+LGNA+TN+ + S+ + R WMDLQQS+N
Sbjct: 59   PPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVN 118

Query: 3764 VLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIG 3585
            +L+DSKTA SQ  ++   GICQ LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIG
Sbjct: 119  LLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIG 177

Query: 3584 IPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVS 3405
            IPP+FAL+LTYPERVTPWN  KLR A+ING + HPGAT+Y D +S+ RLP ++K RI++S
Sbjct: 178  IPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISIS 237

Query: 3404 RKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGE 3225
            RKLPSSR  ++Q GK  ++EFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAH+VRVL GE
Sbjct: 238  RKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 297

Query: 3224 RTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQ 3045
            +T+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQ
Sbjct: 298  KTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQ 357

Query: 3044 DHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILP 2865
            DHIV+AVL+T ++TFL+R EF+QLLY SGV +    S  G    KV V  SE  +  I+P
Sbjct: 358  DHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIP 417

Query: 2864 AVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNA-- 2691
            A+ KP+PLWTGKQVI+++L+HITRG  P TV    K+P+++F +   KN +  ++ N   
Sbjct: 418  AILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPK 477

Query: 2690 ------------------EHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGIL 2565
                              E  +LI++N+LVRGVIDKAQF  YGLVHTVQELYGSN+AGIL
Sbjct: 478  NDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGIL 537

Query: 2564 LSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFK-PGQ 2391
            LS  SRLFT+FLQ HGFTCGVDDL+I+ + D++RK++LE  E    E H +    K   +
Sbjct: 538  LSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSE 597

Query: 2390 IGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKN 2211
              P ELQLEIE+ I  D E+A   LD KM + L N  +++G  +L  LL++GL+K   +N
Sbjct: 598  TAPTELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGEN 654

Query: 2210 CISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFIT 2031
            CIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP F PWD+ ARAGGFI+
Sbjct: 655  CISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFIS 714

Query: 2030 DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDG 1851
            DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD+DG
Sbjct: 715  DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADG 774

Query: 1850 SIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNH-REFNSYISELPEGLEEEAR 1674
            SIVQF YGEDG+DVH+TSF+  F+AL  N++ + +K  +   E +     LP+GL  +A 
Sbjct: 775  SIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAE 834

Query: 1673 RFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAES 1494
            +FI E             +  H+                 K + FL L+K K+L+SLA+ 
Sbjct: 835  QFIRE----------EIKKYQHQK---------------IKPKDFLNLLKLKFLSSLAQP 869

Query: 1493 GEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCP 1314
            GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA   I+TP++TCP
Sbjct: 870  GEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCP 929

Query: 1313 FSEVRSKRDVVALVTKVKKVSVADLLESMEVQL---SINRRKVARTYKLKM------KLK 1161
              + ++K D + L  K+KK++VAD+LESMEV +   +++   +   YKLKM      K  
Sbjct: 930  LHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYF 989

Query: 1160 ETEFVSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXX 981
            E   ++ KD ++ L+ VFL+E+E  I+NHL+ LSKISGIK FM                 
Sbjct: 990  ENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSE 1049

Query: 980  XTRK----------XXXXXXXXXXXXXXXXXXDTQKKTDEMNYGNESDVDHCEDELSADT 831
               +                              Q+ TDEM+Y ++S+V+  E    A  
Sbjct: 1050 GRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAAL 1109

Query: 830  KKGASDEEDHE--------DMDTSKDEGAEHS-----GKEDETRDEQNANEGSTRSKKTD 690
            +      ED            D  KDE ++ S         ++R+E+  +E   + KK  
Sbjct: 1110 ESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSE--PKRKKMK 1167

Query: 689  AKI-----RRAVKHVFERSSFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLV 525
            AK       RA+ +      FEVHFK   EPH+LLAQIA+KTA+KV+++  G++ QCR+ 
Sbjct: 1168 AKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT 1227

Query: 524  QYDPDEKTVIWNDTMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYS 345
                ++      D  K +   +K +         A+  +G+DF +FW M + +D+  LYS
Sbjct: 1228 DCSENQVFYYGEDPKKRKSPSDKEK-------IQALHTTGVDFGAFWKMEDHIDVRYLYS 1280

Query: 344  NNVHAVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGS 165
            N++HA+LNTYGVEAAR T+IRE+  VF  YG+ ++ RHL+LIAD+MTH+G YRPMSR G 
Sbjct: 1281 NSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGG 1340

Query: 164  ISESLSPFLKMSFETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            I+ES+SPF KMSFETASKFIVEAA  GL D LETPSSRICLGLPVK+GTG FDL
Sbjct: 1341 IAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDL 1394


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score = 1459 bits (3778), Expect = 0.0
 Identities = 792/1433 (55%), Positives = 994/1433 (69%), Gaps = 60/1433 (4%)
 Frame = -3

Query: 4121 EKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILV 3942
            ++ +LFSG LLPSEV+ I + LWENE  LCS I DIQ+Q     G   G+SMFFLETILV
Sbjct: 2    KQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---GKKVGYSMFFLETILV 58

Query: 3941 PPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGR-WMDLQQSIN 3765
            PPI+FR   KGGDSVMEH  T+LL KVLQANI+LGNA+TN+ + S+ + R WMDLQQS+N
Sbjct: 59   PPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVN 118

Query: 3764 VLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIG 3585
            +L+DSKTA SQ  ++   GICQ LEKK+G+FRQ MMGKRVNFACRSVISPDPYLAVNEIG
Sbjct: 119  LLFDSKTAMSQG-RDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIG 177

Query: 3584 IPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVS 3405
            IPP+FAL+LTYPERVTPWN  KLR A+ING + HPGAT+Y D +S+ RLP ++K RI++S
Sbjct: 178  IPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISIS 237

Query: 3404 RKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGE 3225
            RKLPSSR  ++Q GK  ++EFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAH+VRVL GE
Sbjct: 238  RKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 297

Query: 3224 RTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQ 3045
            +T+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LIQ
Sbjct: 298  KTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQ 357

Query: 3044 DHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILP 2865
            DHIV+AVL+T ++TFL+R EF+QLLY SGV +    S  G    KV V  SE  +  I+P
Sbjct: 358  DHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIP 417

Query: 2864 AVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASASYKNGEEDQDHNA-- 2691
            A+ KP+PLWTGKQVI+++L+HITRG  P TV    K+P+++F +   KN +  ++ N   
Sbjct: 418  AILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPK 477

Query: 2690 ------------------EHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGIL 2565
                              E  +LI++N+LVRGVIDKAQF  YGLVHTVQELYGSN+AGIL
Sbjct: 478  NDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGIL 537

Query: 2564 LSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKPGQI 2388
            LS  SRLFT+FLQ HGFTCGVDDL+I+ + D++RK++LE  E    E H +    K    
Sbjct: 538  LSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVN-- 595

Query: 2387 GPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNC 2208
               ELQLEIE+ I  D E+A   LD KM + L N  +++G  +L  LL++GL+K   +NC
Sbjct: 596  SETELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGENC 652

Query: 2207 ISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITD 2028
            IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLP F PWD+ ARAGGFI+D
Sbjct: 653  ISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISD 712

Query: 2027 RFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGS 1848
            RFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRD+DGS
Sbjct: 713  RFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGS 772

Query: 1847 IVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNH-REFNSYISELPEGLEEEARR 1671
            IVQF YGEDG+DVH+TSF+  F+AL  N++ + +K  +   E +     LP+GL  +A +
Sbjct: 773  IVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQ 832

Query: 1670 FIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESG 1491
            FI E             +  H+                 K + FL L+K K+L+SLA+ G
Sbjct: 833  FIRE----------EIKKYQHQK---------------IKPKDFLNLLKLKFLSSLAQPG 867

Query: 1490 EPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPF 1311
            EPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA   I+TP++TCP 
Sbjct: 868  EPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPL 927

Query: 1310 SEVRSKRDVVALVTKVKKVSVADLLESMEVQL---SINRRKVARTYKLKM------KLKE 1158
             + ++K D + L  K+KK++VAD+LESMEV +   +++   +   YKLKM      K  E
Sbjct: 928  HKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFE 987

Query: 1157 TEFVSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXX 978
               ++ KD ++ L+ VFL+E+E  I+NHL+ LSKISGIK FM                  
Sbjct: 988  NSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEG 1047

Query: 977  TRK----------XXXXXXXXXXXXXXXXXXDTQKKTDEMNYGNESDVDHCEDELSADTK 828
              +                              Q+ TDEM+Y ++S+V+  E    A  +
Sbjct: 1048 RSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAALE 1107

Query: 827  KGASDEEDHE--------DMDTSKDEGAEHS-----GKEDETRDEQNANEGSTRSKKTDA 687
                  ED            D  KDE ++ S         ++R+E+  +E   + KK  A
Sbjct: 1108 SEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSE--PKRKKMKA 1165

Query: 686  KI-----RRAVKHVFERSSFEVHFKFTTEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQ 522
            K       RA+ +      FEVHFK   EPH+LLAQIA+KTA+KV+++  G++ QCR+  
Sbjct: 1166 KFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTD 1225

Query: 521  YDPDEKTVIWNDTMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSN 342
               ++      D  K +   +K +         A+  +G+DF +FW M + +D+  LYSN
Sbjct: 1226 CSENQVFYYGEDPKKRKSPSDKEK-------IQALHTTGVDFGAFWKMEDHIDVRYLYSN 1278

Query: 341  NVHAVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSI 162
            ++HA+LNTYGVEAAR T+IRE+  VF  YG+ ++ RHL+LIAD+MTH+G YRPMSR G I
Sbjct: 1279 SIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGI 1338

Query: 161  SESLSPFLKMSFETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            +ES+SPF KMSFETASKFIVEAA  GL D LETPSSRICLGLPVK+GTG FDL
Sbjct: 1339 AESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDL 1391


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 1450 bits (3753), Expect = 0.0
 Identities = 815/1604 (50%), Positives = 1045/1604 (65%), Gaps = 47/1604 (2%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHAS-HSGVS 4497
            HF AK  +VE  VSQL+ I +GD+  AK+L              P +SD S  S  SGV+
Sbjct: 124  HFMAKPYDVERAVSQLKLIIKGDIVSAKQLE----------SNTPTKSDSSDVSCESGVT 173

Query: 4496 SDGEN--QDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHV 4323
            +D     +D   +D  W S    E  +V+  F++   K C  CK VNP++ KP FGW  +
Sbjct: 174  TDSSEGCEDSDMEDQRWTSLQFAEVTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVRM 233

Query: 4322 TGISKTEMRSNAIRSSRLDVTYSGDEDRPSSEVLNTSDY--SLXXXXXXXXXXXXXXXXX 4149
              +  +++ +N IR  +L         + +S V N  D+  S                  
Sbjct: 234  KAMKGSDIVANVIRGLKLK--------KSTSSVENPDDFDDSGIDALSEVEDGDKETREK 285

Query: 4148 KRDLNRELQEKADLFSGSLLPSEVRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFS 3969
              ++ +E +E  +     LLP+EVR IL+ LWENE   CS+I D+ +  S+   Y    S
Sbjct: 286  STEVVKEFEEHNNSSKRDLLPTEVREILKDLWENEHDFCSFIGDLWQSGSEKIDY----S 341

Query: 3968 MFFLETILVPPIRFRPSAKGGDSVMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRW 3789
            MFFLE++LVPPI+FRPS KGGDSVMEH  T+ L KVL +NI LGNA TN  + S+II RW
Sbjct: 342  MFFLESVLVPPIKFRPSTKGGDSVMEHPQTVGLNKVLGSNIQLGNACTNKLDQSKIISRW 401

Query: 3788 MDLQQSINVLYDSKTANSQSQKNGPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDP 3609
            M+LQ+S+NVL+DSKTA  QSQ+ G  GICQ LEKK+GLFRQ MMGKRVN ACRSVISPDP
Sbjct: 402  MNLQESVNVLFDSKTATVQSQREG-SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDP 460

Query: 3608 YLAVNEIGIPPHFALKLTYPERVTPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPAN 3429
            Y+AVN+IGIPP FALKLTYPERVTPWN  KLR A+INGPDIHPGAT+Y D +S+ +LP+ 
Sbjct: 461  YIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKLSTVKLPST 520

Query: 3428 KKMRIAVSRKLPSSRSVVSQSGKIGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAH 3249
            +K R A++RKL SSR   ++ GK  +  FEGK V RH++DGD+VLVNRQPTLHKPS+MAH
Sbjct: 521  EKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAH 580

Query: 3248 IVRVLPGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKG 3069
            IVRVL GE+TLR+HYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY  P+ G
Sbjct: 581  IVRVLRGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNG 640

Query: 3068 DTVRGLIQDHIVAAVLITMKNTFLTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSE 2889
            D +R LIQDHIV++VL+T ++TFL +  F+QLL+ SGV      S  G    KV V  S+
Sbjct: 641  DPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASD 700

Query: 2888 GLVESILPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKVPKNYFASAS------ 2727
              + ++ PA+ KP PLWTGKQVITA+LN IT+G  P TV+   K+P ++F   S      
Sbjct: 701  AELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPN 760

Query: 2726 ------YKNGEEDQDHNAEHD-LLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGI 2568
                   K  +E    N   D LLI KNE V GVIDKAQF  YGLVHTV ELYGSN+AG 
Sbjct: 761  SGDLTKKKKIDESWKQNLNEDKLLIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGN 820

Query: 2567 LLSALSRLFTIFLQFHGFTCGVDDLIILPNFDLQRKEKL-EGEDVGEEV-HCDFVKFKPG 2394
            LLS  SRLFT+FLQ HGFTCGVDDLIIL + D +R ++L E E+VGE V    F      
Sbjct: 821  LLSVFSRLFTVFLQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDV 880

Query: 2393 QIGPEELQLEIEKAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPK 2214
            QI P++++  IE+ +  D ESA A+LD  + N L N+ +++G  ++  LL+ GLLK    
Sbjct: 881  QIDPQDMRSRIERILYEDGESALASLDRSIVNDL-NQCSSKG--VMNDLLSDGLLKTPGM 937

Query: 2213 NCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFI 2034
            NCIS+MT +GAKGS VNFQQIS++LGQQ+LEGKRVPRMVSGKTLP F PWD++ RAGGFI
Sbjct: 938  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 997

Query: 2033 TDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSD 1854
            +DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+ YD TVRD+D
Sbjct: 998  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINYDCTVRDAD 1057

Query: 1853 GSIVQFYYGEDGVDVHKTSFLKNFKALEDNRETIWQKFQNH--REFNSYISELPEGLEEE 1680
            GSI+QF YGEDGVDVH++SF++ FK L  N++ + Q+         NSYIS+LP  L+  
Sbjct: 1058 GSIIQFQYGEDGVDVHRSSFIEKFKELAINQDMVLQRCSEDMLSGANSYISDLPISLKNG 1117

Query: 1679 ARRFIHETHGNTSGKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLA 1500
            A +F+     N   +  AS                     F ++   L+LVK K+  SLA
Sbjct: 1118 AEKFVEAMPMN---ERIASK--------------------FVRQEELLKLVKSKFFASLA 1154

Query: 1499 ESGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILT 1320
            + GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA   IKTPI+T
Sbjct: 1155 QPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMT 1214

Query: 1319 CPFSEVRSKRDVVALVTKVKKVSVADLLESME---VQLSINRRKVARTYKLKMKLKETEF 1149
            CP  + ++K D   +  K++K++VAD+++SM+   V  ++ + +V   +KLK+ L + E 
Sbjct: 1215 CPLLKGKTKEDANDITGKLRKITVADIIKSMDLSVVPYTVYKNEVCSIHKLKINLYKPEH 1274

Query: 1148 ------VSSKDIKNTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXX 987
                  ++ KD + T+  VFL+++E  IE H+  L +I GI N                 
Sbjct: 1275 YPKHTDITEKDWEETMTVVFLRKLEDAIEIHMKMLHRIRGICNDKGPEAGNETDNDDSVS 1334

Query: 986  XXXTRKXXXXXXXXXXXXXXXXXXDTQKK--TDEMNYGNESDVDHCEDELSADTKKGASD 813
                +                     QKK  TDEM+Y  E+  D   +  S    +    
Sbjct: 1335 GKQNKDDGDDDGEGTEVDDLGSDAQKQKKQVTDEMDY-EENSEDETNEPSSISGVEDPEM 1393

Query: 812  EEDHEDMDTSKDEGAEHSGKED----ETRDEQNANEGSTRSKKTDAKIRR------AVKH 663
            + ++ED + SK++  E   + D    ET + Q   +     K+   K RR      + +H
Sbjct: 1394 DSENEDAEVSKEDTPEPQEEADVSKEETMEPQKEVKAVKNVKEQSKKKRRKFVGATSDRH 1453

Query: 662  VF---ERSSFEVHFKFTT-EPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEKTVI 495
            +F   E   FEVHF+F T +PH+LLAQIAQKTAQKV+++ SG++ +C +     D + + 
Sbjct: 1454 IFVRGEGEKFEVHFQFATDDPHILLAQIAQKTAQKVYIQDSGKIERCTVANCG-DPQVIY 1512

Query: 494  WNDTMKPRRGENKPQTGADDALYWAMKASGIDFKSFWDMHEDLDLSRLYSNNVHAVLNTY 315
              D  K RR  +  +  A  AL+    ASG+DF + W+  + LD+  LYSN++H +LN +
Sbjct: 1513 HGDNPKERREISNDEKKASPALH----ASGVDFPALWEFQDKLDVRYLYSNSIHDMLNVF 1568

Query: 314  GVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLSPFLK 135
            GVEAAR T+IRE+  VF  YG+ +  RHL+LIADYMT +GGYRPMSR G I+ES SPF +
Sbjct: 1569 GVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCR 1628

Query: 134  MSFETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            M+FETA+KFIV+AA  G  D LETPS+RICLGLP   GTGCFDL
Sbjct: 1629 MTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDL 1672


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score = 1449 bits (3751), Expect = 0.0
 Identities = 774/1428 (54%), Positives = 983/1428 (68%), Gaps = 69/1428 (4%)
 Frame = -3

Query: 4079 VRNILRRLWENEAPLCSYICDIQRQNSKISGYMEGFSMFFLETILVPPIRFRPSAKGGDS 3900
            V+ I+R LWENE+ LCS+I DIQ Q +  +G   G+SMFFLET+LVPPI+FRP +KGGDS
Sbjct: 212  VKEIIRLLWENESQLCSFISDIQCQETGTNG---GYSMFFLETVLVPPIKFRPPSKGGDS 268

Query: 3899 VMEHAHTILLGKVLQANIALGNAHTNSAEHSRIIGRWMDLQQSINVLYDSKTANSQSQKN 3720
            VMEH  T+LL KVL+AN++L    TN  EHSRII RW DLQ+SINV+++SKTA  Q Q++
Sbjct: 269  VMEHPQTVLLSKVLEANVSLSQTLTN-LEHSRIIRRWRDLQESINVMFNSKTAAGQGQRD 327

Query: 3719 GPGGICQNLEKKDGLFRQNMMGKRVNFACRSVISPDPYLAVNEIGIPPHFALKLTYPERV 3540
               GICQ LEKK+GLFRQ MMGKRVNFACRSVISPDPYLAVNEIGIPP+FA +LTYPERV
Sbjct: 328  AAPGICQLLEKKEGLFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFATRLTYPERV 387

Query: 3539 TPWNAGKLRSAVINGPDIHPGATNYEDSVSSFRLPANKKMRIAVSRKLPSSRSVVSQSGK 3360
            TPWN  KLR+A++NG +IHPGAT Y D      L  N++ RI++SRKLPSS+  V Q GK
Sbjct: 388  TPWNVDKLRNAIVNGSEIHPGATQYVDKSGPKILRQNRRERISISRKLPSSKGAVMQHGK 447

Query: 3359 IGEHEFEGKIVRRHLQDGDIVLVNRQPTLHKPSIMAHIVRVLPGERTLRMHYANCSSYNA 3180
              +++ E KIV RHL+DGDIVLVNRQPTLHKPSIMAH+VRVL GE+T+RMHYANCS+YNA
Sbjct: 448  GSDNDIESKIVHRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNA 507

Query: 3179 DFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVAAVLITMKNTF 3000
            DFDGDE+NVHFPQDEISR+EAYNIVNAN QY+ PT GD +R LIQDH+++AVL+T K+TF
Sbjct: 508  DFDGDEMNVHFPQDEISRSEAYNIVNANNQYVKPTSGDPIRALIQDHVISAVLLTKKDTF 567

Query: 2999 LTRSEFSQLLYGSGVFAAGPGSHPGDRSLKVSVVDSEGLVESILPAVWKPEPLWTGKQVI 2820
            L   +F+QLLY S V A    +  G    KV + +SEG ++ +LPA+WKPEPLWTGKQVI
Sbjct: 568  LRWDQFNQLLYSSCVSARVSDAFSGKPDKKVFMFNSEGTMQPLLPAIWKPEPLWTGKQVI 627

Query: 2819 TALLNHITRGCAPCTVKNQGKVPKNYF------------------------ASASYKNGE 2712
            TALLNHITRG  P TV+   K+P+ +F                          A+ K+  
Sbjct: 628  TALLNHITRGSPPVTVERDAKIPRGFFNCKNVEGEDKSGNDGQQKKRKPSKEQATDKDSS 687

Query: 2711 EDQDHNAEHDLLIWKNELVRGVIDKAQFGKYGLVHTVQELYGSNSAGILLSALSRLFTIF 2532
            ++++   E+ LLI++N LVRGVIDKAQFG YGLVHTVQE YGS++AG LLS LS LFT++
Sbjct: 688  KEKEEPDENHLLIYRNNLVRGVIDKAQFGDYGLVHTVQEFYGSDTAGKLLSVLSHLFTVY 747

Query: 2531 LQFHGFTCGVDDLIILPNFDLQRKEKLEG-EDVGEEVHCDFVKFKP-GQIGPEELQLEIE 2358
            LQ HGFTCG+DDL++L + D + K++LE  EDVGE V+ DF++ K   +  P ELQL IE
Sbjct: 748  LQMHGFTCGIDDLLLLESKDAKMKDQLESCEDVGENVYRDFIEVKDVKRKDPVELQLNIE 807

Query: 2357 KAICSDRESATATLDMKMKNKLTNRLTTEGSQILKHLLTKGLLKPFPKNCISVMTTTGAK 2178
              I S+ ESA A+LD +M ++L N+  T  S + K LL +GL KP  KNCI +MTT+GAK
Sbjct: 808  NFIRSNGESALASLDRRMISQLNNK--TSNSDVFKQLLLRGLSKPSVKNCIYLMTTSGAK 865

Query: 2177 GSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQE 1998
            GS  N QQI++YLGQQELEGKRVP+M+SGKTLP FPPWD+++RAGGFI DRFL+GL PQE
Sbjct: 866  GSVANLQQITSYLGQQELEGKRVPQMISGKTLPCFPPWDWSSRAGGFIIDRFLTGLHPQE 925

Query: 1997 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDG 1818
            YYFHCMAGREGLVDTAVKTSRSGYLQRC+IKNLE LKV YD TVRD+DGSI+QF YGEDG
Sbjct: 926  YYFHCMAGREGLVDTAVKTSRSGYLQRCIIKNLECLKVSYDNTVRDADGSIIQFRYGEDG 985

Query: 1817 VDVHKTSFLKNFKALEDNRETIWQKFQNHRE-FNSYISELPEGLEEEARRFIHETHGNTS 1641
            +DVH TSF++ F++L  N+E   +K +   +  N YI +LP  L+E+A +F+H       
Sbjct: 986  IDVHMTSFIQKFESLIANKEMFHKKGRRQMDKLNPYIKDLPLALKEKAEKFVH------- 1038

Query: 1640 GKHNASSEQLHRNXXXXXXXXXXXXKAFTKERGFLELVKQKYLTSLAESGEPVGVIAAQS 1461
               N + ++   N                 +  FL+L++ KYL SLA+ GEPVGV+A QS
Sbjct: 1039 ---NLALKEKDHNF----------------QEDFLKLMEHKYLCSLAQPGEPVGVLAGQS 1079

Query: 1460 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAPTKIKTPILTCPFSEVRSKRDVV 1281
            VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA   IKTP++TCP  + RSK +  
Sbjct: 1080 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAANDIKTPVMTCPLQKGRSKEEAQ 1139

Query: 1280 ALVTKVKKVSVADLLESME---VQLSINRRKVARTYKLKMKLKETEFV------SSKDIK 1128
             L  K+KK++VAD++ESM+   V   I   +  R YKL+M L   E +      SS+D +
Sbjct: 1140 ELADKLKKITVADIIESMKVTFVPFFIQDGQTCRIYKLEMTLHVPEHLRTIIEYSSEDWE 1199

Query: 1127 NTLEGVFLKEMEAQIENHLIFLSKISGIKNFMXXXXXXXXXXXXXXXXXXTRKXXXXXXX 948
              LE VF++E+E  I+NH++ LSKISGIKNF                     +       
Sbjct: 1200 EILEIVFVRELEDAIQNHILLLSKISGIKNFTPDSQPKASNETDENLPEKRSQREEEDDD 1259

Query: 947  XXXXXXXXXXXDTQ-----------KKTDEMNY---------------GNESDVDHCED- 849
                         +           + TDEM+Y               G+ES++D  E+ 
Sbjct: 1260 NGGADDGEHGEGVEDFGLDAHKRKLQATDEMDYEDGCDDEVREADLSDGDESEIDEEENE 1319

Query: 848  -ELSADTKKGASDEEDHEDMDTSKDEG--AEHSGKEDETRD-EQNANEGSTRSKKTDAKI 681
             E+  D + G  D  D       ++ G  A+   KE +T+   Q   +   R++    + 
Sbjct: 1320 VEIGKDGEIGVIDANDEMPGSPLEEAGDLAKPKSKEKKTKSGSQIRKKRKVRAEMVKKET 1379

Query: 680  RRAVKHVFERSSFEVHFKFT-TEPHVLLAQIAQKTAQKVFLKRSGEMSQCRLVQYDPDEK 504
             RA+    +   FEVHF+F   EPH+LL+QIAQKTAQKV+++RSG+++ C+ +  D ++ 
Sbjct: 1380 DRAIFVSAKGFHFEVHFRFADNEPHILLSQIAQKTAQKVYIQRSGKVADCKQITCDENQV 1439

Query: 503  TVIWNDTMKPRRGENKPQTGADDALYW-AMKASGIDFKSFWDMHEDLDLSRLYSNNVHAV 327
                 D       ENK    + +     A++ +GIDF +FW + + LD+  +YSNN+HA+
Sbjct: 1440 LCFGKDP------ENKQSFSSKEKKEMPALQTTGIDFGTFWQLQDVLDVRYIYSNNIHAM 1493

Query: 326  LNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPMSRSGSISESLS 147
            LNTYGVEAAR T+IRE+  VF  YG+ ++ RHL+LIAD+MTH GGYRP++R G I ES+S
Sbjct: 1494 LNTYGVEAARETIIREINNVFKSYGISVNIRHLTLIADFMTHAGGYRPLNRFGGIVESIS 1553

Query: 146  PFLKMSFETASKFIVEAALMGLADELETPSSRICLGLPVKVGTGCFDL 3
            PF KM+FETASKFIVEAA  G  D LETPS+RICLGLPV VGTGCFDL
Sbjct: 1554 PFNKMTFETASKFIVEAAYHGQVDRLETPSARICLGLPVNVGTGCFDL 1601



 Score = 87.0 bits (214), Expect = 7e-14
 Identities = 49/117 (41%), Positives = 64/117 (54%)
 Frame = -3

Query: 4673 HFRAKKEEVENYVSQLERIREGDLAGAKRLGLLQKMAKKKIGTDPEESDGSHASHSGVSS 4494
            HFR  ++ VE +VSQL+ I +GD+ GAKRL                ESD S + +S  + 
Sbjct: 112  HFRTSRQHVEKHVSQLKLIMKGDVLGAKRL----------------ESD-SPSEYSDCNG 154

Query: 4493 DGENQDEHEKDAFWDSTLLTESKSVLNEFLKKREKKCGNCKRVNPKITKPTFGWFHV 4323
             G + D   K   W S   TE  SVL++ L    K+C NCK  NPKI+KPTFGWF +
Sbjct: 155  SGNHIDNDSKQQGWTSLQFTEIMSVLDKALPTHGKECKNCKAKNPKISKPTFGWFQM 211