BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00005870
         (966 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...    95   4e-17
gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...    87   8e-15
ref|XP_783871.3| PREDICTED: uncharacterized protein LOC578620 [S...    70   1e-09
gb|ELU04758.1| hypothetical protein CAPTEDRAFT_91083 [Capitella ...    60   2e-06
emb|CCD16975.1| unnamed protein product [Trypanosoma congolense ...    57   8e-06

>gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1784

 Score = 95.1 bits (235), Expect = 4e-17
 Identities = 61/174 (35%), Positives = 102/174 (58%), Gaps = 1/174 (0%)
 Frame = +3

Query: 117  FLQPNIS*L*PNISELQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFSLLQXXXXXXXX 296
            +LQP+I+ L P+I+ELQ YF  L PN   +QPYF+ L P+V+ LQP+F+ L         
Sbjct: 1593 WLQPDITELQPDITELQPYFTELLPNVTELQPYFTELLPDVTELQPYFTELLPDVTELQP 1652

Query: 297  XXXXXXXXXTILQPNLTFVQPYLSIIQPYLSIIQPNLTCLQPNFTWLQSHLTKLQSHLTK 476
                     T LQP  T + P ++ +QPY + + P++T L P+ T LQ +LT+L   +T+
Sbjct: 1653 YFTELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTGLLPDVTELQPYLTELLPEVTE 1712

Query: 477  LQSF-SKV*SFSSILTNKSQDHTFKSIQSILSKLQPNITYIFSF*SKL*SKQPV 635
            LQ + + V SF+ + + + +D   + +QS  SKLQP +  + +  + + + +P+
Sbjct: 1713 LQPYVTLVQSFTCLFSKQPKDD--EPVQSSSSKLQPCLADLLAHLTIICTTKPI 1764



 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
 Frame = +3

Query: 204  IQPYFSCLQPNVSGLQPHFSLLQXXXXXXXXXXXXXXXXXTILQPNLTFVQPY------- 362
            IQPY + LQP+++ LQP  + LQ                 T L P++T +QPY       
Sbjct: 1587 IQPYVAWLQPDITELQPDITELQPYFTELLPNVTELQPYFTELLPDVTELQPYFTELLPD 1646

Query: 363  LSIIQPYLSIIQPNLTCLQPNFTWLQSHLTKLQSHLTKLQSFSKV*SFSSILTNKSQDHT 542
            ++ +QPY + + P++T LQP FT L   +T+LQ + TKL     +   + +L + ++   
Sbjct: 1647 VTELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTKL-----LPDVTGLLPDVTELQP 1701

Query: 543  F-KSIQSILSKLQPNITYIFSF*SKL*SKQP 632
            +   +   +++LQP +T + SF + L SKQP
Sbjct: 1702 YLTELLPEVTELQPYVTLVQSF-TCLFSKQP 1731


>gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 1846

 Score = 87.4 bits (215), Expect = 8e-15
 Identities = 61/181 (33%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
 Frame = +3

Query: 117  FLQPNIS*L*PNISELQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFSLLQXXXXXXXX 296
            +LQP+++ L P+I+ELQ Y   L P+   +QPYF+ L P+V+ LQP+F+ L         
Sbjct: 1648 WLQPDVTELQPDITELQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLPDVTELQP 1707

Query: 297  XXXXXXXXXTILQPNLTFVQPYLSIIQPYLSIIQPNLTCLQPNF-------TWLQSHLTK 455
                     T LQP  T + P ++ +QPY + + P++T LQP F       T LQ +LT+
Sbjct: 1708 YFTELLPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYLTE 1767

Query: 456  LQSHLTKLQSF-SKV*SFSSILTNKSQDHTFKSIQSILSKLQPNITYIFSF*SKL*SKQP 632
            L   +T+LQ + + V SF+ + + + +D   + IQS  SKLQP +  + +  + + + +P
Sbjct: 1768 LLPEVTELQPYVTFVQSFTCLFSKQPKDD--EPIQSSSSKLQPCLADLLAHLTIICTTKP 1825

Query: 633  V 635
            +
Sbjct: 1826 I 1826



 Score = 74.7 bits (182), Expect = 5e-11
 Identities = 55/171 (32%), Positives = 89/171 (52%)
 Frame = +3

Query: 120  LQPNIS*L*PNISELQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFSLLQXXXXXXXXX 299
            +QP ++ L P+++ELQ       P+   +QPY + LQP+++ LQP+F+ L          
Sbjct: 1642 IQPYVAWLQPDVTELQ-------PDITELQPYVTELQPDITELQPYFTELLPDVTELQPY 1694

Query: 300  XXXXXXXXTILQPNLTFVQPYLSIIQPYLSIIQPNLTCLQPNFTWLQSHLTKLQSHLTKL 479
                    T LQP  T + P ++ +QPY + + P++T LQP FT L   +T+LQ + T+L
Sbjct: 1695 FTELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPYFTEL 1754

Query: 480  QSFSKV*SFSSILTNKSQDHTFKSIQSILSKLQPNITYIFSF*SKL*SKQP 632
                 V      LT    +         +++LQP +T++ SF + L SKQP
Sbjct: 1755 --LPDVTELQPYLTELLPE---------VTELQPYVTFVQSF-TCLFSKQP 1793


>ref|XP_783871.3| PREDICTED: uncharacterized protein LOC578620 [Strongylocentrotus
            purpuratus]
          Length = 1668

 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 44/130 (33%), Positives = 67/130 (51%)
 Frame = +3

Query: 93   SILFTNFPFLQPNIS*L*PNISELQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFSLLQ 272
            S+L      LQP +S L   +S L+     L P    ++P  S LQP VS LQP  SLLQ
Sbjct: 832  SLLQPGLGLLQPRLSLLQQRVSLLKPRVSLLQPRLGLLKPRVSLLQPRVSLLQPRVSLLQ 891

Query: 273  XXXXXXXXXXXXXXXXXTILQPNLTFVQPYLSIIQPYLSIIQPNLTCLQPNFTWLQSHLT 452
                              +L+P ++ +QP L ++QP +S++QP L+ LQP  + LQ  ++
Sbjct: 892  RRMGLLQPRVSLLQPRLGLLKPRVSLLQPRLVLLQPRVSLLQPRLSLLQPRVSLLQQRVS 951

Query: 453  KLQSHLTKLQ 482
             L+  ++ LQ
Sbjct: 952  LLKPRVSLLQ 961



 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 49/156 (31%), Positives = 72/156 (46%)
 Frame = +3

Query: 15   LQPYFPYL*S*FSWI*PYEPCIFSHQSILFTNFPFLQPNIS*L*PNISELQSYFP*L*PN 194
            LQP    L    S + P    +    S+L      LQP +S L P +  L+     L P 
Sbjct: 778  LQPRLGLLQPRVSLLQPRVSLLQPRVSLLQRRMGLLQPRVSLLQPRLGLLKPRVSLLQPG 837

Query: 195  FPSIQPYFSCLQPNVSGLQPHFSLLQXXXXXXXXXXXXXXXXXTILQPNLTFVQPYLSII 374
               +QP  S LQ  VS L+P  SLLQ                 ++LQP ++ +Q  + ++
Sbjct: 838  LGLLQPRLSLLQQRVSLLKPRVSLLQPRLGLLKPRVSLLQPRVSLLQPRVSLLQRRMGLL 897

Query: 375  QPYLSIIQPNLTCLQPNFTWLQSHLTKLQSHLTKLQ 482
            QP +S++QP L  L+P  + LQ  L  LQ  ++ LQ
Sbjct: 898  QPRVSLLQPRLGLLKPRVSLLQPRLVLLQPRVSLLQ 933



 Score = 67.8 bits (164), Expect = 6e-09
 Identities = 44/129 (34%), Positives = 63/129 (48%)
 Frame = +3

Query: 96   ILFTNFPFLQPNIS*L*PNISELQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFSLLQX 275
            +L      LQ  +S L P +S LQ     L P    +QP  S LQP VS LQ    LLQ 
Sbjct: 840  LLQPRLSLLQQRVSLLKPRVSLLQPRLGLLKPRVSLLQPRVSLLQPRVSLLQRRMGLLQP 899

Query: 276  XXXXXXXXXXXXXXXXTILQPNLTFVQPYLSIIQPYLSIIQPNLTCLQPNFTWLQSHLTK 455
                            ++LQP L  +QP +S++QP LS++QP ++ LQ   + L+  ++ 
Sbjct: 900  RVSLLQPRLGLLKPRVSLLQPRLVLLQPRVSLLQPRLSLLQPRVSLLQQRVSLLKPRVSL 959

Query: 456  LQSHLTKLQ 482
            LQ  L  L+
Sbjct: 960  LQPRLGLLK 968



 Score = 67.8 bits (164), Expect = 6e-09
 Identities = 50/157 (31%), Positives = 73/157 (46%)
 Frame = +3

Query: 15   LQPYFPYL*S*FSWI*PYEPCIFSHQSILFTNFPFLQPNIS*L*PNISELQSYFP*L*PN 194
            LQP    L    S + P    +     +L      LQP +S L P +S LQ     L P 
Sbjct: 841  LQPRLSLLQQRVSLLKPRVSLLQPRLGLLKPRVSLLQPRVSLLQPRVSLLQRRMGLLQPR 900

Query: 195  FPSIQPYFSCLQPNVSGLQPHFSLLQXXXXXXXXXXXXXXXXXTILQPNLTFVQPYLSII 374
               +QP    L+P VS LQP   LLQ                 ++LQP L+ +QP +S++
Sbjct: 901  VSLLQPRLGLLKPRVSLLQPRLVLLQPRV--------------SLLQPRLSLLQPRVSLL 946

Query: 375  QPYLSIIQPNLTCLQPNFTWLQSHLTKLQSHLTKLQS 485
            Q  +S+++P ++ LQP    L+  ++ LQ  L  LQS
Sbjct: 947  QQRVSLLKPRVSLLQPRLGLLKPRVSLLQPRLGLLQS 983



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 40/133 (30%), Positives = 63/133 (47%)
 Frame = +3

Query: 84   SHQSILFTNFPFLQPNIS*L*PNISELQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFS 263
            S  + L      LQP +  L P +S LQ     L P    +Q     LQP VS LQP   
Sbjct: 766  SEPTALQPRLGLLQPRLGLLQPRVSLLQPRVSLLQPRVSLLQRRMGLLQPRVSLLQPRLG 825

Query: 264  LLQXXXXXXXXXXXXXXXXXTILQPNLTFVQPYLSIIQPYLSIIQPNLTCLQPNFTWLQS 443
            LL+                 ++LQ  ++ ++P +S++QP L +++P ++ LQP  + LQ 
Sbjct: 826  LLKPRVSLLQPGLGLLQPRLSLLQQRVSLLKPRVSLLQPRLGLLKPRVSLLQPRVSLLQP 885

Query: 444  HLTKLQSHLTKLQ 482
             ++ LQ  +  LQ
Sbjct: 886  RVSLLQRRMGLLQ 898



 Score = 58.2 bits (139), Expect = 5e-06
 Identities = 48/157 (30%), Positives = 69/157 (43%)
 Frame = +3

Query: 15   LQPYFPYL*S*FSWI*PYEPCIFSHQSILFTNFPFLQPNIS*L*PNISELQSYFP*L*PN 194
            LQP    L    S + P    +    S+L      LQP +S L P +  L+     L P 
Sbjct: 862  LQPRLGLLKPRVSLLQPRVSLLQPRVSLLQRRMGLLQPRVSLLQPRLGLLKPRVSLLQPR 921

Query: 195  FPSIQPYFSCLQPNVSGLQPHFSLLQXXXXXXXXXXXXXXXXXTILQPNLTFVQPYLSII 374
               +QP  S LQP +S LQP  SLLQ                 ++L+P ++ +QP L ++
Sbjct: 922  LVLLQPRVSLLQPRLSLLQPRVSLLQQRV--------------SLLKPRVSLLQPRLGLL 967

Query: 375  QPYLSIIQPNLTCLQPNFTWLQSHLTKLQSHLTKLQS 485
            +P +S++QP L  LQ   T   +  T   S  T   S
Sbjct: 968  KPRVSLLQPRLGLLQSRPTATTTGPTATMSEPTATAS 1004


>gb|ELU04758.1| hypothetical protein CAPTEDRAFT_91083 [Capitella teleta]
          Length = 120

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 39/138 (28%), Positives = 63/138 (45%)
 Frame = +3

Query: 63  PYEPCIFSHQSILFTNFPFLQPNIS*L*PNISELQSYFP*L*PNFPSIQPYFSCLQPNVS 242
           P+  C+  H S L ++   L P++S L  ++S               + P+ SCL P VS
Sbjct: 2   PHASCLMPHASCLMSHVSCLMPHVSCLMSHVS--------------CLMPHDSCLMPLVS 47

Query: 243 GLQPHFSLLQXXXXXXXXXXXXXXXXXTILQPNLTFVQPYLSIIQPYLSIIQPNLTCLQP 422
            L PH S L                  + L P+++ + P+ S + P+ S + P+ +CL P
Sbjct: 48  CLMPHDSCL--------------LSHVSWLMPHVSCLMPHASCLIPHASCLMPHASCLMP 93

Query: 423 NFTWLQSHLTKLQSHLTK 476
           + + L SH + L  H TK
Sbjct: 94  HASCLMSHASCLMPHDTK 111


>emb|CCD16975.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 242

 Score = 57.4 bits (137), Expect = 8e-06
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 3/179 (1%)
 Frame = +3

Query: 90  QSILFTNFPFLQPNIS*L*PNISELQSYFP*L*PNFPSIQPYFSCLQPNVSGLQPHFSLL 269
           +SI+      +QP  S + P  S++Q     + P    +QP  S +QP  S +QP  S +
Sbjct: 19  KSIMQPMKSIMQPMKSIMQPMKSKMQPMKSKMQPMKSIMQPMKSKMQPMKSKMQPMKSKM 78

Query: 270 QXXXXXXXXXXXXXXXXXTILQPNLTFVQPYLSIIQPYLSIIQPNLTCLQPNFTWLQSHL 449
           Q                 +I+QP  + +QP  SI+QP  SI+QP  + +QP  + +Q   
Sbjct: 79  QPMKSIMQPMKSIMQPMKSIMQPMKSIMQPMKSIMQPMKSIMQPMKSIMQPMKSKMQPMK 138

Query: 450 TKLQSHLTKLQSFSKV*S-FSSIL-TNKSQDHTFKSI-QSILSKLQPNITYIFSF*SKL 617
           +K+Q   +K+Q    +     SI+   KS+    KSI Q + SK+QP  + I    SK+
Sbjct: 139 SKMQPMKSKMQPVKSIMQPMKSIMQPMKSKIQPMKSIMQPMKSKMQPMKSKIQPMKSKI 197