BLASTX nr result
ID: Mentha27_contig00002062
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha27_contig00002062
(2285 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza] 1122 0.0
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 1033 0.0
gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza] 925 0.0
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise... 910 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 899 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 897 0.0
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu... 894 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 893 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 892 0.0
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 890 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 889 0.0
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu... 889 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 887 0.0
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 882 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 870 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 870 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 865 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 849 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 842 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 840 0.0
>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
Length = 1101
Score = 1122 bits (2903), Expect = 0.0
Identities = 560/731 (76%), Positives = 626/731 (85%), Gaps = 8/731 (1%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
MRKTLHVSGFP L +AE ++ FLE + G IEALE+KPGKRG R YAKVQFT A
Sbjct: 1 MRKTLHVSGFPKLIAAEEVRKFLEGHTCEGAIEALEVKPGKRGSRAYAKVQFTSKEDADK 60
Query: 295 IIDLCKSGLFY----NGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLW 462
II L GL+Y + SYLKAFEQD NFV N R+ E++G+TLNFGCQ+S+DRFSVLW
Sbjct: 61 IIHLANIGLYYYLGNSRSYLKAFEQDTNFV-NHRSFMHELDGLTLNFGCQVSKDRFSVLW 119
Query: 463 KATDVDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLYPNA----RLLLIQLFGAP 630
+A DV V FG+ L KM + VEYRLQLS E++WQIVLY ++ RLLLIQLFGAP
Sbjct: 120 RAADVSVKFGSSLNKMHLFVCDDLVEYRLQLSYENIWQIVLYNSSVQTERLLLIQLFGAP 179
Query: 631 RIYKKLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYY 810
RIYKKLE S+YSFY+ETP+DQWVRTTDFTPSCIGQSSGLCLQL L +F+ +F++Y
Sbjct: 180 RIYKKLEYSVYSFYRETPDDQWVRTTDFTPSCIGQSSGLCLQLPRHVK-LPDFKNNFMHY 238
Query: 811 SVRETPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFF 990
+V E PF + +G PFC NLPLVPIVQPPRGLELPY++LFK+CSLVQTGCLPGMKL+ FF
Sbjct: 239 TVSEEPFQLVNGAPFCGNLPLVPIVQPPRGLELPYKLLFKVCSLVQTGCLPGMKLDTEFF 298
Query: 991 RCVNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLV 1170
+C+NP+R I+YIEHAL+KLY+ KECCYDPVAWL EQYRKY+T EE PKPPTI LDDGLV
Sbjct: 299 QCLNPRRYAIRYIEHALDKLYYIKECCYDPVAWLREQYRKYQTFEELPKPPTISLDDGLV 358
Query: 1171 YVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAA 1350
Y+HRVQVTPTRVYF+GPEVNMSNRVLR FS +IDNFLRVSFIDEEW+KM+STDLSP+VA
Sbjct: 359 YIHRVQVTPTRVYFAGPEVNMSNRVLRQFSAHIDNFLRVSFIDEEWDKMYSTDLSPKVAT 418
Query: 1351 GIGNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQW 1530
G+GNGRTKLYERVLST+RNGI IG+KRF FLAFSSSQLRENSLWMFAPV L AD IR+W
Sbjct: 419 GVGNGRTKLYERVLSTLRNGITIGEKRFQFLAFSSSQLRENSLWMFAPVDGLTADDIRRW 478
Query: 1531 MGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKIS 1710
MGDFSSIRNVAKYAARLGQSF SSTETL V+ EVE IPDV+VVRDG TY FSDGIGKIS
Sbjct: 479 MGDFSSIRNVAKYAARLGQSFSSSTETLKVAQYEVERIPDVEVVRDGTTYIFSDGIGKIS 538
Query: 1711 SGFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDV 1890
S FA +VA+KCGI+ VPS FQIRYGGYKGVVA+DPTS+ KLSLR+SMLKYQSDN KLDV
Sbjct: 539 SDFARRVATKCGIRDGVPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMLKYQSDNTKLDV 598
Query: 1891 LSWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPG 2070
LSWSKYQPCF+NRQIITLLSTLGV D VFEKKQREAVAQLD ILVDPLKAQDAL+LMSPG
Sbjct: 599 LSWSKYQPCFMNRQIITLLSTLGVRDHVFEKKQREAVAQLDDILVDPLKAQDALDLMSPG 658
Query: 2071 ENTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGT 2250
ENTNILKEML CGYKP+EEPFLS MLQ FR +KLLDLR+KARIFIP+ARQMMGCMDETGT
Sbjct: 659 ENTNILKEMLKCGYKPDEEPFLSMMLQTFRLAKLLDLRVKARIFIPQARQMMGCMDETGT 718
Query: 2251 LEYGQVFVQVS 2283
LEYGQVFVQ S
Sbjct: 719 LEYGQVFVQFS 729
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 1033 bits (2670), Expect = 0.0
Identities = 511/727 (70%), Positives = 598/727 (82%), Gaps = 4/727 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M +T+ V GFP L +AE +K FLE +G GT+ ALE+K K G R YA+VQFT+ R A+
Sbjct: 1 MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVGRRAYARVQFTNIRCAET 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
IIDL K+ L+Y SYLKA+E D + V NPRT EM +TLNFGCQIS +FSVLWK
Sbjct: 61 IIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWKGES 120
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V V FG +KKM F L H VEY++QLS E++WQIVLY +++LL+IQLFGAPRIYK
Sbjct: 121 VTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPRIYK 180
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
KL S+YS++ T +DQWVRTTDFT S IGQSS LCLQL Y L NF +F+YY E
Sbjct: 181 KLSGSVYSYFMVTQDDQWVRTTDFTQSLIGQSSSLCLQLPYGMR-LPNFRDNFLYYKESE 239
Query: 823 TPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRCVN 1002
TPF +E+G PF N LVPIV+PP ++LPY +LFK+CSLVQTGCLPG KL+ +FF VN
Sbjct: 240 TPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPGPKLDRSFFDLVN 299
Query: 1003 PQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYVHR 1182
P + DI+YIEHALEKLY+ KECCY+P AWL EQY +YRTS+E PK P ICLDDGLVYVHR
Sbjct: 300 PAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPAICLDDGLVYVHR 359
Query: 1183 VQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGIGN 1362
VQVTPTRVYFSGPEVN+SNRVLRH+ +YIDNFLRVSF+DEEW+KM+STDLSPRVAAG N
Sbjct: 360 VQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYSTDLSPRVAAGDEN 419
Query: 1363 GRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWMGDF 1542
RTKLYERV+S +R+G+RIGD++FDFLAFSSSQLR+NSLWMFAP L+AD IR+WMGDF
Sbjct: 420 KRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDGLNADGIREWMGDF 479
Query: 1543 SSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISSGFA 1722
SSIRNVAKYAARLGQSFGSSTETLSVS E+E I DVK +G YTFSDGIGKIS FA
Sbjct: 480 SSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDVK---NGTEYTFSDGIGKISEDFA 536
Query: 1723 IKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVLSWS 1902
+VA+KCG++ S PS FQIRYGGYKGVVA+DP+S KKLSLR SMLKYQSDN KLDVL+WS
Sbjct: 537 RQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSMLKYQSDNTKLDVLAWS 596
Query: 1903 KYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGENTN 2082
KYQPCFLNRQIITLLSTLGV D VFEK+QREAVAQLD +L+DP++AQ+AL+LMSPGENT+
Sbjct: 597 KYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMRAQEALDLMSPGENTH 656
Query: 2083 ILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTLEYG 2262
ILKEML CGY+P+ EPFLS MLQ FR+SKLLDLR+KAR+FIP+ARQMMGC+DETG L+YG
Sbjct: 657 ILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKARQMMGCLDETGILKYG 716
Query: 2263 QVFVQVS 2283
QVFV+ S
Sbjct: 717 QVFVRYS 723
>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
Length = 1118
Score = 925 bits (2391), Expect = 0.0
Identities = 463/657 (70%), Positives = 546/657 (83%), Gaps = 5/657 (0%)
Frame = +1
Query: 328 NGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATDVDVVFGAKLKK 507
N YLK +EQ + VPNPRT + + G+TLN GCQISED FSVLWKA+DV + FG LK
Sbjct: 11 NTYYLKFWEQKTDIVPNPRTYDNVVEGVTLNLGCQISEDEFSVLWKASDVSIKFGTGLKN 70
Query: 508 MQFLLSHGEVEYRLQLSSESVWQIVLYPN----ARLLLIQLFGAPRIYKKLETSIYSFYK 675
M L H VEYRLQL +++WQIVLY + A++LLIQL+GAPRI+KKL S+YS+++
Sbjct: 71 MHLFLCHESVEYRLQLYYDNIWQIVLYNSGGQAAQVLLIQLYGAPRIHKKLPDSVYSYFQ 130
Query: 676 ETPEDQWVRTTDFTPS-CIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFYIESGTP 852
+TP+DQWVRTTDFTPS CIGQSSG+CLQ L FE+ FVYY + PF++E+G P
Sbjct: 131 QTPDDQWVRTTDFTPSSCIGQSSGMCLQFPSGIK-LPEFERHFVYYKESKKPFFLENGVP 189
Query: 853 FCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRCVNPQRVDIKYIE 1032
FC NL LVPI+QP RGLELPYR+LFK+C LVQTGCLPG KL+ F+R +NP+ DI Y+E
Sbjct: 190 FCENLDLVPIMQP-RGLELPYRLLFKVCCLVQTGCLPGPKLDDNFYRLLNPKSFDITYLE 248
Query: 1033 HALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYVHRVQVTPTRVYF 1212
LEKLY+ KECCYDP +WL+EQ++ Y T ++ PKPP + +D LV++HRVQVTPT+VYF
Sbjct: 249 QLLEKLYYLKECCYDPHSWLIEQHQNYCTFKK-PKPPAV--NDDLVHIHRVQVTPTKVYF 305
Query: 1213 SGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGIGNGRTKLYERVL 1392
GPE N+SNRVLR+F ++IDNFLRVSF++E+W+KM+++DLSPR A G N RTKLYERVL
Sbjct: 306 HGPEANVSNRVLRNFHDHIDNFLRVSFVEEDWSKMYASDLSPRGAGGDENTRTKLYERVL 365
Query: 1393 STMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWMGDFSSIRNVAKYA 1572
ST+RNGI IG K+F+FLAFSSSQLRENSLWMFAPV L+AD IR+WMGDFSSIRNVAKYA
Sbjct: 366 STLRNGITIGSKKFEFLAFSSSQLRENSLWMFAPVDGLNADDIRRWMGDFSSIRNVAKYA 425
Query: 1573 ARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISSGFAIKVASKCGIK 1752
ARLGQSFGSSTETLSV+ NEVE IPDV+VV +G TY FSDGIGKIS FA +VA KCG+K
Sbjct: 426 ARLGQSFGSSTETLSVAQNEVEKIPDVEVVTNGTTYIFSDGIGKISVDFARRVAIKCGLK 485
Query: 1753 GSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVLSWSKYQPCFLNRQ 1932
++PS FQIRYGGYKGVVAIDPTS+ K+SLR SMLKYQSD+ KL+VL WSKYQPCFLNRQ
Sbjct: 486 SNIPSAFQIRYGGYKGVVAIDPTSSVKMSLRPSMLKYQSDDTKLNVLGWSKYQPCFLNRQ 545
Query: 1933 IITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGENTNILKEMLNCGY 2112
IITLLSTLGV D VFEKKQREAVAQL+ ILVDPLKA +AL+LMS GENT ILKEML CGY
Sbjct: 546 IITLLSTLGVMDHVFEKKQREAVAQLNDILVDPLKALEALDLMSLGENTYILKEMLKCGY 605
Query: 2113 KPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTLEYGQVFVQVS 2283
KP+EEPFL+ MLQ FRSS+LLDLR K+RIFIP+AR MMGC+DETGTLEYGQVFVQ S
Sbjct: 606 KPDEEPFLAMMLQTFRSSQLLDLRTKSRIFIPQARNMMGCLDETGTLEYGQVFVQFS 662
>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
Length = 1095
Score = 910 bits (2352), Expect = 0.0
Identities = 463/727 (63%), Positives = 560/727 (77%), Gaps = 4/727 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M T+ + GFP+ A+ +K +E +G GT+ AL+++ K GPR YA VQF D+R A+M
Sbjct: 1 MGLTVMIFGFPSRVPADSVKQLVERYTGQGTVVALKVEASKSGPRAYAVVQFLDARSAEM 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
I+ ++ L+Y SYLK D V NP TN ++ +TL+FGCQIS ++FSVLW +D
Sbjct: 61 IVH-AQNSLYYGSSYLKVRYSDKELVRNPATNLQLIDQVTLHFGCQISGNKFSVLWSCSD 119
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY---PNARLLLIQLFGAPRIYKK 645
V V FG +LK + F+L G Y LQLS +S+W+ VLY R LLIQLFGAPRI KK
Sbjct: 120 VTVKFGTQLKTISFILFDGLYNYMLQLSYKSIWKTVLYNPSSGRRKLLIQLFGAPRISKK 179
Query: 646 LETSIYSFYKETPEDQWVRTTDFTPSC-IGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+E S YS+Y EDQWVRTTDFT + IGQSSGLCL+ + S L F DFVY+ +E
Sbjct: 180 VEGSPYSYYNVYTEDQWVRTTDFTRAALIGQSSGLCLEFPHGSR-LPRFRDDFVYFKEKE 238
Query: 823 TPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRCVN 1002
F+++ G F N L PIV PPRGL LPY I+FKICSLVQ GC+PG +L+A F+R VN
Sbjct: 239 EEFHLQEGYSFSQNSVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELDANFYRMVN 298
Query: 1003 PQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYVHR 1182
PQ VDI+YIEHALEK+++ KECCYDPV WL QYR+Y+TS+ P PTI L+ GLVYV R
Sbjct: 299 PQLVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQTSK--PSSPTISLEGGLVYVRR 356
Query: 1183 VQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGIGN 1362
VQ+TP+RVYF+GPE+N+SNRVLR + + ID+FLRVSF+DE+W+K+FS LS + G
Sbjct: 357 VQITPSRVYFTGPEINVSNRVLRQYKDRIDDFLRVSFVDEDWDKLFSLTLSSKTEIG--- 413
Query: 1363 GRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWMGDF 1542
+T++YER+LS +R GIRIGDKRFDFLAFSSSQLRENSLWMFAP + AD IR+WMGDF
Sbjct: 414 -KTRIYERILSVLREGIRIGDKRFDFLAFSSSQLRENSLWMFAPSNGVTADDIRKWMGDF 472
Query: 1543 SSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISSGFA 1722
SIRNVAKYAARLGQSFGSSTETL+V +E IPD+ KTYTFSDGIGKIS+ FA
Sbjct: 473 RSIRNVAKYAARLGQSFGSSTETLTVQRDEYLLIPDITRQTGDKTYTFSDGIGKISADFA 532
Query: 1723 IKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVLSWS 1902
+VA+KC VPS FQIRYGG+KGVVA+DP+S KLSLR SM KY+SDN KLDVLSWS
Sbjct: 533 RRVAAKCRFTHRVPSAFQIRYGGFKGVVAVDPSSNMKLSLRPSMKKYESDNTKLDVLSWS 592
Query: 1903 KYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGENTN 2082
KY PCFLNRQIITLLSTLGV DRVF KKQREAVAQLD ILVDPL+AQ+ L+LM+PGEN++
Sbjct: 593 KYLPCFLNRQIITLLSTLGVEDRVFLKKQREAVAQLDEILVDPLRAQEVLDLMAPGENSH 652
Query: 2083 ILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTLEYG 2262
ILKEML CGYKP+EEPFLS ML+AFRSSKLLDLR K+RIF+P ARQ+MGC+DETGTLEYG
Sbjct: 653 ILKEMLKCGYKPDEEPFLSMMLRAFRSSKLLDLRTKSRIFVPEARQLMGCLDETGTLEYG 712
Query: 2263 QVFVQVS 2283
+VFVQ+S
Sbjct: 713 EVFVQIS 719
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 899 bits (2324), Expect = 0.0
Identities = 467/729 (64%), Positives = 555/729 (76%), Gaps = 6/729 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GFP L SAE +K FLE +G GT+ ALE+K K G R +AKVQF +++ A+
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
IIDL GL+Y SYLKA+E + V PRT + M+G+TLNFGCQIS+ +F+VL + D
Sbjct: 61 IIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLG-SKD 118
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG LKK+ F LSH +Y+LQLS E++WQ+VL+ NA+ LL+QLFGAPRIYK
Sbjct: 119 VSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYK 178
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+LE S YSF+KETP+DQWVRTTDFTPS IG SS LCL+ L NF + F YY
Sbjct: 179 RLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQ-LPNFSESFFYYKESM 237
Query: 823 TPFYIESGTPFCAN--LPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
F +++G F + L LVPIV P G+ELPY+ILFKI SL+Q GC PG+ LN FF+
Sbjct: 238 NQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQL 297
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+P+R +I IEHALEKLY+ KECCYDPV WL EQY +Y + PK P I LDDGLVYV
Sbjct: 298 VDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYV 357
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RV VTP +VYF GPEVN+SNRVLR++S I+NFLRVSF+DEEW K+ STDL PR + G
Sbjct: 358 RRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGN 417
Query: 1357 GNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWMG 1536
G RT +YER+LST+RNG IGDKRF+FLAFSSSQLR+NS+WMFA L A+ IR WMG
Sbjct: 418 GT-RTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMG 476
Query: 1537 DFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISSG 1716
DF IRNVAKYAARLGQSFGSS ETLSV +EVE IPDV G Y FSDGIGKIS+
Sbjct: 477 DFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISAD 536
Query: 1717 FAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVLS 1896
FA +V KCG++ + PS+FQIRYGGYKGVVA+DP S+ KLSLR+SMLKY+S+N KLDVL
Sbjct: 537 FAHRVTIKCGLQYT-PSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLG 595
Query: 1897 WSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGEN 2076
WSKYQPC+LNRQ++TLLSTLGV D V E+KQ EAV QLD+IL D LKAQ+ALELMSPGEN
Sbjct: 596 WSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGEN 655
Query: 2077 TNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTLE 2256
TNILKEMLNCGY P+ EPFLS MLQ FR+SKLLDLR + RIFIP R MMGC+DE+ TLE
Sbjct: 656 TNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLE 715
Query: 2257 YGQVFVQVS 2283
YGQVFVQ S
Sbjct: 716 YGQVFVQFS 724
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 897 bits (2318), Expect = 0.0
Identities = 468/727 (64%), Positives = 557/727 (76%), Gaps = 6/727 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GFP L SAE +KSFLE +G GT+ ALE+K K G R +AKVQF D+ A
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
II L + L++ SYLKA+E + V R D+M+GITLNFGCQIS+D+F+VL +T+
Sbjct: 61 IITLANNRLYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLG-STE 118
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG LKK F LS G +Y+LQLS E++WQ+VL+ NA+ LLIQLFGAPRIYK
Sbjct: 119 VSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+LE S YSF+KETP+DQWVRTTDF PS IG SS LCLQ L NFE+ F +Y+ RE
Sbjct: 179 RLENSCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVR-LPNFEESFFHYAERE 237
Query: 823 TPFYIESGTPFCANLP--LVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
+++G F + LVP VQPP G+ +PY+ILFKI SLVQ GC+PG LN FFR
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRL 297
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+P+R ++ IEHALEKLY+ KECCYDPV WL EQY Y + PK P+I LDDGLVYV
Sbjct: 298 VDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++STDL P+ + G
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGS 417
Query: 1357 GNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWMG 1536
G RT +YER+LST+R G IGDK+F+FLAFSSSQLR+NS+WMFA L A+ IR WMG
Sbjct: 418 GV-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMG 476
Query: 1537 DFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISSG 1716
DFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +Y FSDGIGKIS
Sbjct: 477 DFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISGD 534
Query: 1717 FAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVLS 1896
FA +VASKCG++ + PS FQIRYGGYKGVV +DP S+ KLSLR+SM KY+SDN KLDVL
Sbjct: 535 FAHRVASKCGLQYT-PSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLG 593
Query: 1897 WSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGEN 2076
WSKYQPC+LNRQ+ITLLSTLGV D V E+KQ+EAV QLD+IL D LKAQ+ALELMSPGEN
Sbjct: 594 WSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGEN 653
Query: 2077 TNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTLE 2256
TNILK MLNCGYKP+ EPFLS MLQ FR+SKLLDLR ++RIFIP R MMGC+DE+ TLE
Sbjct: 654 TNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLE 713
Query: 2257 YGQVFVQ 2277
YGQVFVQ
Sbjct: 714 YGQVFVQ 720
>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 894 bits (2310), Expect = 0.0
Identities = 468/728 (64%), Positives = 557/728 (76%), Gaps = 7/728 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GFP L SAE +KSFLE +G GT+ ALE+K K G R +AKVQF D+ A
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
II+L L++ SYLKA+E + V R D M+GITLNFGCQIS+D+F+VL +T+
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVLG-STE 118
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG LKK F LS G +Y+LQLS E++WQ+VL+ NA+ LLIQLFGAPRIYK
Sbjct: 119 VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+LE S YSF+KETP+DQWVRTTDF PS IG SS LCLQ L NF++ F +Y+ RE
Sbjct: 179 RLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYTERE 237
Query: 823 TPFYIESGTPFCANLP--LVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
+++G F + LVP VQPP G+ +PY+ILFKI SLVQ GC+PG LN FFR
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+PQR ++ IE ALEKLY+ KECCYDPV WL EQY Y + PK P+I LDDGLVYV
Sbjct: 298 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++STDL P+ A
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK--AST 415
Query: 1357 GNG-RTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWM 1533
GNG RT +YER+LST+R G IGDK+F+FLAFSSSQLR+NS+WMFA L A+ IR WM
Sbjct: 416 GNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 475
Query: 1534 GDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISS 1713
GDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +Y FSDGIGKIS+
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 533
Query: 1714 GFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVL 1893
FA +VASKCG++ + PS FQIRYGGYKGVVA+DP S+ KLSLR+SM KY+SDN KLDVL
Sbjct: 534 DFARRVASKCGLQYT-PSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592
Query: 1894 SWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGE 2073
WSKYQPC+LNRQ++TLLSTLGV D V E+KQ+EAV QLD+IL D LKAQ+ALELMSPGE
Sbjct: 593 GWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652
Query: 2074 NTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTL 2253
NTNILK MLNCGY P+ EPFLS MLQ FR+SKLLDLR ++RIFIP R MMGC+DE+ TL
Sbjct: 653 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTL 712
Query: 2254 EYGQVFVQ 2277
EYGQVFVQ
Sbjct: 713 EYGQVFVQ 720
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 893 bits (2308), Expect = 0.0
Identities = 468/728 (64%), Positives = 556/728 (76%), Gaps = 7/728 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GFP L SAE +K FLE +G GTI ALE+K K G R +AKVQF D+ A
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
II+L L++ SYLKA+E + V R D M+GITLNFGCQISED+F+VL +T+
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLG-STE 118
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG LKK F LS G +Y+LQLS E++WQ+VL+ NA+ LLIQLFGAPRIYK
Sbjct: 119 VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+LE S YSF+KETP+DQWVRTTDFTPS IG SS LCLQ L NF++ F +Y+ RE
Sbjct: 179 RLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYAERE 237
Query: 823 TPFYIESGTPFCANLP--LVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
+++G F + LVP VQPP G+ +PY+ILFKI SLVQ GC+PG LN FFR
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+PQR ++ IE ALEKLY+ KECCYDPV WL EQY Y + PK P+I LDDGLVYV
Sbjct: 298 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++ST+L P+ A
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPK--AST 415
Query: 1357 GNG-RTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWM 1533
GNG RT +YER+LST+R G IGDK+F+FLAFSSSQLR+NS+WMFA L + IR WM
Sbjct: 416 GNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWM 475
Query: 1534 GDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISS 1713
GDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +Y FSDGIGKIS+
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 533
Query: 1714 GFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVL 1893
FA +VASKCG++ + PS FQIRYGGYKGVVA+DP S+ KLSLR+SM KY+SDN KLDVL
Sbjct: 534 DFARRVASKCGLQYT-PSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592
Query: 1894 SWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGE 2073
WSKYQPC+LNRQ++TLLSTLGV D V E+KQ+EAV QLD+IL D LKAQ+ALELMSPGE
Sbjct: 593 GWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGE 652
Query: 2074 NTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTL 2253
NTNILK MLNCGY P+ EPFLS MLQ FR+SKLLDLR ++RIFIP R MMGC+DE+ TL
Sbjct: 653 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTL 712
Query: 2254 EYGQVFVQ 2277
EYGQVFVQ
Sbjct: 713 EYGQVFVQ 720
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 892 bits (2304), Expect = 0.0
Identities = 469/728 (64%), Positives = 556/728 (76%), Gaps = 7/728 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GFP L SAE +KSFLE +G GT+ ALE+K K G R +AKVQF D+ A
Sbjct: 1 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
II+L L++ SYLKA E + + V D M+GITLNFGCQIS+D+F+VL +T+
Sbjct: 61 IINLASKRLYFGSSYLKAREMETDLV-QLWEYVDHMDGITLNFGCQISDDKFAVLG-STE 118
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG LKK F LS G +Y+LQLS E++WQ+VL+ NA+ LLIQLFGAPRIYK
Sbjct: 119 VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+LE S YSF+KETP+DQWVRTTDF PS IG SS LCLQ L NF++ F +Y+ RE
Sbjct: 179 RLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYAERE 237
Query: 823 TPFYIESGTPFCANLP--LVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
+++G F + LVP VQPP G+ +PY+ILFKI SLVQ GC+PG LN FFR
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+PQR ++ IE ALEKLY+ KECCYDPV WL EQY Y + PK P+I LDDGLVYV
Sbjct: 298 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYV 357
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++STDL P+ A
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK--AST 415
Query: 1357 GNG-RTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWM 1533
GNG RT +YER+LST+R G IGDK+F+FLAFSSSQLR+NS+WMFA L A IR WM
Sbjct: 416 GNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWM 475
Query: 1534 GDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISS 1713
GDFS I+NVAKYAARLGQSFGSSTETLSV +E+E IPDVKV G +Y FSDGIGKIS+
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 533
Query: 1714 GFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVL 1893
FA +VASKCG++ + PS FQIRYGGYKGVVA+DP S+ KLSLR+SM KY+SDN KLDVL
Sbjct: 534 DFARRVASKCGLQHT-PSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592
Query: 1894 SWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGE 2073
WSKYQPC+LNRQ++TLLSTLGV D V E+KQ+EAV QLD+IL D LKAQ+ALELMSPGE
Sbjct: 593 GWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652
Query: 2074 NTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTL 2253
NTNILK MLNCGY P+ EPFLS MLQ FR+SKLLDLR K+RIFIP R MMGC+DE+ TL
Sbjct: 653 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTL 712
Query: 2254 EYGQVFVQ 2277
EYGQVFVQ
Sbjct: 713 EYGQVFVQ 720
>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 890 bits (2300), Expect = 0.0
Identities = 465/728 (63%), Positives = 556/728 (76%), Gaps = 7/728 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GFP L AE +KSFLE +G GT+ AL++K K G R +AKVQF D+ A
Sbjct: 1 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
II+L L++ SYLKA+E + V D M+GITLNFGCQIS+D+F+VL +T+
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQVAYV--DHMDGITLNFGCQISDDKFAVLG-STE 117
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG LKK+ F LS G +Y+LQLS E++WQ+VL+ NA+ LLIQLFGAPRIYK
Sbjct: 118 VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 177
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+LE S YSF+KETP+DQWVRTTDF PS IG SS LCLQ L NF++ F +Y+ RE
Sbjct: 178 RLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYAERE 236
Query: 823 TPFYIESGTPFCANLP--LVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
+++G F + LVP VQPP G+ +PY+ILFKI SLVQ GC+PG LN FFR
Sbjct: 237 NNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRL 296
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+PQR ++ IE ALEKLY+ KECCYDPV WL EQY Y + PK P+I LDDGLVYV
Sbjct: 297 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 356
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++ST+L P+ A
Sbjct: 357 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPK--AST 414
Query: 1357 GNG-RTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWM 1533
GNG RT +YER+LSTM+ G IGDK+F+FLAFSSSQLR+NS+WMFA L A+ IR WM
Sbjct: 415 GNGIRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 474
Query: 1534 GDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISS 1713
GDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +Y FSDGIGKIS+
Sbjct: 475 GDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 532
Query: 1714 GFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVL 1893
FA +VASKCG++ + PS FQIRYGGYKGVVA+DP S+ KLSLR+SM KY+SDN KLDVL
Sbjct: 533 DFARRVASKCGLQYT-PSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 591
Query: 1894 SWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGE 2073
WSKYQPC+LNRQ+ITLLSTLGV D + E+KQ+EAV QLD+IL D LKAQ+ALELMSPGE
Sbjct: 592 GWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 651
Query: 2074 NTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTL 2253
NTNILK MLNCGY P+ EPFLS MLQ FR+SKLLDLR K+RIFIP R MMGC+DE+ TL
Sbjct: 652 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTL 711
Query: 2254 EYGQVFVQ 2277
EYGQVFVQ
Sbjct: 712 EYGQVFVQ 719
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 889 bits (2297), Expect = 0.0
Identities = 467/728 (64%), Positives = 555/728 (76%), Gaps = 7/728 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GFP L SAE +KSFLE +G GT+ ALE+K K G R +AKVQF D+ A
Sbjct: 1 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
II+L L++ SYLKA+E + V R D M+GITLNFGCQIS+D+F+VL +T+
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVLG-STE 118
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG LKK F LS G +Y+LQLS E++WQ+VL+ NA+ LLIQLFGAPRIYK
Sbjct: 119 VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+LE S YSF+KETP+DQWVRTTDF PS IG SS LCLQ L NF++ F +Y+ RE
Sbjct: 179 RLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYAERE 237
Query: 823 TPFYIESGTPFCANLP--LVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
+++G F + LVP VQPP G+ +PY+ILFKI SLVQ GC+PG LN FFR
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRL 297
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+PQR ++ IE ALEKLY+ KECCYDPV WL EQY Y + PK P+I LDDGLVYV
Sbjct: 298 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYV 357
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++STDL P+ A
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPK--AST 415
Query: 1357 GNG-RTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWM 1533
GNG RT +Y R+LST++ G IGDK+F+FLAFSSSQLR+NS+WMFA L A IR WM
Sbjct: 416 GNGIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWM 475
Query: 1534 GDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISS 1713
GDFS I+NVAKYAARLGQSFGSS ETLSV +E+E IPDVKV G +Y FSDGIGKIS+
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKV--HGTSYVFSDGIGKISA 533
Query: 1714 GFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVL 1893
FA +VASKCG++ + PS FQIRYGGYKGVVA+DP S+ KLSLR+SM KY+SDN KLDVL
Sbjct: 534 DFARRVASKCGLQYT-PSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592
Query: 1894 SWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGE 2073
WSKYQPCFLNRQ++TLLSTLGV D V E+KQ+EAV QLD+IL D LKAQ+ALELMSPGE
Sbjct: 593 EWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652
Query: 2074 NTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTL 2253
NTNILK MLNCGY P+ EPFLS MLQ FR+SKLLDLR ++RIFIP R MMGC+DE+ TL
Sbjct: 653 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTL 712
Query: 2254 EYGQVFVQ 2277
EYGQVFVQ
Sbjct: 713 EYGQVFVQ 720
>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 889 bits (2297), Expect = 0.0
Identities = 466/728 (64%), Positives = 555/728 (76%), Gaps = 7/728 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GFP L SAE +KSFLE +G GT+ ALE+K K G R +AKVQF D+ A
Sbjct: 1 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
II+L L++ SYLKA+E + + V D M+GITLNFGCQIS+D+F+VL +T+
Sbjct: 61 IINLASKRLYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAVLG-STE 118
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG LK F LS G +Y+LQLS E++WQ+VL+ NA+ LLIQLFGAPRIYK
Sbjct: 119 VSIKFGIGLKNFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYK 178
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+LE S YSF+KETP+DQWVRTTDFTPS IG SS LCLQ L NF++ F +Y+ RE
Sbjct: 179 RLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYAERE 237
Query: 823 TPFYIESGTPFCANLP--LVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
+++G F + LVP VQPP G+ +PY+ILFKI SLVQ GC+PG LN FFR
Sbjct: 238 NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+PQR ++ IE ALEKLY+ KECCYDPV WL EQY Y + PK P+I LDDGLVYV
Sbjct: 298 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYV 357
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K++ST+L P+ A
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPK--AST 415
Query: 1357 GNG-RTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWM 1533
GNG RT +YER+LST+R G IGDK+F+FLAFSSSQLR+NS+WMFA L A+ IR WM
Sbjct: 416 GNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWM 475
Query: 1534 GDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISS 1713
GDFS I+NVAKYAAR GQSFGSS ETLSV +E+E IPDVKV G +Y FSDGIGKIS+
Sbjct: 476 GDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 533
Query: 1714 GFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVL 1893
FA KVAS CG++ + PS FQIRYGGYKGVVA+DP S+ KLSLR+SM KY+SDN KLDVL
Sbjct: 534 DFARKVASNCGLQYT-PSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592
Query: 1894 SWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGE 2073
WSKYQPC+LNRQ++TLLSTLGV D V E+KQ+EAV QLD+IL D LKAQ+ALELMSPGE
Sbjct: 593 EWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652
Query: 2074 NTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTL 2253
NTNILK MLNCGY P+ EPFLS MLQ FR+SKLLDLR K+RIFIP R MMGC+DE+ TL
Sbjct: 653 NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTL 712
Query: 2254 EYGQVFVQ 2277
EYGQVFVQ
Sbjct: 713 EYGQVFVQ 720
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 887 bits (2291), Expect = 0.0
Identities = 463/729 (63%), Positives = 553/729 (75%), Gaps = 8/729 (1%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GFP L SAE +K+FLE +G GT+ ALE+K K G R +AKVQF +++ A++
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
IIDL GL+Y SYLKA+E ++ PRT M+G+TLNFGCQIS+ +F+VL
Sbjct: 61 IIDLASKGLYYGPSYLKAWEM-KTYIVQPRTYVQHMDGVTLNFGCQISDKKFAVLGSKV- 118
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG LKK+ F LS+G +Y+LQLS E++WQ+VL+ A+ LL+QL GAPRIYK
Sbjct: 119 VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIYK 178
Query: 643 KLETSIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRE 822
+LE S YSF+KETP+DQWVRTTDFTPS IG SS LCL+ + L NF + F YY
Sbjct: 179 RLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEF-HNGVRLPNFSESFFYYKESA 237
Query: 823 TPFYIESGTPFCAN---LPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFR 993
+++G F + L LVPIV P G+ELPY+ILFKI SL+Q GC PG+ LN FF+
Sbjct: 238 NQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQ 297
Query: 994 CVNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVY 1173
V+P+R +I IEHALEKLY+ KECCYDPV WL EQY +Y + PK P+I LDDGLVY
Sbjct: 298 LVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVY 357
Query: 1174 VHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAG 1353
V RV VTP +VYF GPEVN+SNRVLR++S IDNFLRVSF+DEEW K+ STDL PR A
Sbjct: 358 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPR--AS 415
Query: 1354 IGNG-RTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQW 1530
GNG RT +Y R+LST+RNG IGDK+F+FLAFSSSQLR+NS+WMFA L A+ IR W
Sbjct: 416 TGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTW 475
Query: 1531 MGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKIS 1710
MG F IRNVAKYAARLGQSFGSS ETLSV +EVE IPDV G Y FSDGIGKIS
Sbjct: 476 MGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKIS 535
Query: 1711 SGFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDV 1890
+ FA +VA KCG++ + PS FQIRYGGYKGVVA+DP S+ KLSLR SMLKY+S+N KLDV
Sbjct: 536 ADFARRVAVKCGLQYT-PSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDV 594
Query: 1891 LSWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPG 2070
L WSKYQPC+LNRQ++TLLSTLGV D VFE+KQ EAV QLD+IL D LKAQ+ALELMSPG
Sbjct: 595 LGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPG 654
Query: 2071 ENTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGT 2250
ENTNILKEMLNCGY P+ EPFLS MLQ FR+SKLLDLR ++RIFIP R MMGC+DE+ T
Sbjct: 655 ENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRT 714
Query: 2251 LEYGQVFVQ 2277
LEYGQVFVQ
Sbjct: 715 LEYGQVFVQ 723
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 882 bits (2278), Expect = 0.0
Identities = 455/736 (61%), Positives = 553/736 (75%), Gaps = 13/736 (1%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ VS FP+ AE +K+FLE +G T+ AL+++ K G R YA VQFT S A++
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGRAYAIVQFTKSTDAEL 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
II L L+Y SYLKA E +N+ VP PRT M G+TL+FGCQ+S ++F VLW+ D
Sbjct: 61 IIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEVD 120
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V V FG ++K+QFLLSH VEYRL L E++WQI L+ ++ LLIQLFGAPRIY+
Sbjct: 121 VTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIYE 180
Query: 643 K--------LETSIYSFYKETPEDQWVRTTDFTPS-CIGQSSGLCLQLDYISNFLKNFEK 795
K E + +++ + P+DQWVRTTDFT S CIGQSS LCL+L Y L NF +
Sbjct: 181 KDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQ-LPNFRE 239
Query: 796 DFVYYSVRETPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKL 975
+F YY E F +ESG+ + NL LVPIV P G++LPY ILFKI LVQ GC+PG L
Sbjct: 240 NFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPAL 299
Query: 976 NAAFFRCVNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICL 1155
+A F+R VNP R+D YI+HALEKLY+ KECC++P WLLEQY+ Y S++ P P I L
Sbjct: 300 DANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISL 359
Query: 1156 DDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLS 1335
DDGLV V RVQ+TP+RVYF GPE+N+SNRVLRHF + IDNFLR++F+DEE K+ STDL
Sbjct: 360 DDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLL 419
Query: 1336 PRVAAGIGNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDAD 1515
R N T++Y R+LST++NGI IGDK+F+FLAFSSSQLRENS WMFA L A
Sbjct: 420 TR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAA 473
Query: 1516 YIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDG 1695
IR WMG+FS IRNVAKYAARLGQSF SSTETLSV+ +E+E I DV++ RDG Y FSDG
Sbjct: 474 DIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDG 533
Query: 1696 IGKISSGFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDN 1875
IGKIS+ FA KVA+KC + G PS FQIR GG+KGVVA+DPTS+KKLSLR SM KY+S+N
Sbjct: 534 IGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESEN 593
Query: 1876 PKLDVLSWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALE 2055
KLDVL+WSKYQPCFLNRQ+ITLLSTLGV D FE+KQRE V QL++IL DPLKAQ+ALE
Sbjct: 594 TKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEALE 653
Query: 2056 LMSPGENTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCM 2235
LMSPGENTNILKEML CGY+P+ EPFLS MLQ FR+SKLL+LR K+RIF+ R MMGC+
Sbjct: 654 LMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGCL 713
Query: 2236 DETGTLEYGQVFVQVS 2283
DET TL+YGQVFVQVS
Sbjct: 714 DETRTLDYGQVFVQVS 729
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 870 bits (2249), Expect = 0.0
Identities = 459/729 (62%), Positives = 549/729 (75%), Gaps = 6/729 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRG-PRTYAKVQFTDSRYAK 291
M KT+ V G P+ SA IK FLE +G GTIEALE+K K G T+AKVQFT R A+
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 292 MIIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKAT 471
+II L K L+Y G+YLKA E D + +P PRT M+ ITL+FG Q+S +RF VLWKA
Sbjct: 61 LIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAI 119
Query: 472 DVDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLYP----NARLLLIQLFGAPRIY 639
+V V FG L+K F LSHG EY+L+LS E++WQI L N + LLIQL AP+IY
Sbjct: 120 NVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIY 179
Query: 640 KKLETSIYSFYKETPEDQWVRTTDFTPSC-IGQSSGLCLQLDYISNFLKNFEKDFVYYSV 816
+K + S S++KETP+DQWVR DFTPSC IGQSS LCL+L + S L NF ++F Y
Sbjct: 180 EK-DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQ-LPNFCENFARYKE 237
Query: 817 RETPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
+ F +ESG F NL LVPIV PP+G LP++ILFKI +LVQ GCL G L+ FFR
Sbjct: 238 NDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRW 297
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+PQR++I +IEHALEKLY+ +ECCY+PV WL EQYR Y S++ P I LD GLVYV
Sbjct: 298 VDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY-ISKQVAGSPAISLDTGLVYV 356
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RVQ+TP +VYF GPEVN+SNRVLR++ IDNFLRVSF+DE K+ ST +SPR++
Sbjct: 357 RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMSNE- 415
Query: 1357 GNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWMG 1536
RT +Y R+LS ++NGI IGDK+FDFLA SSSQLR+NS WMFA L A IR MG
Sbjct: 416 -GRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMG 474
Query: 1537 DFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISSG 1716
DFS IRNVAKYAARLGQSF SS ETL V+ +E+E IPD++ RDG TY FSDGIGKIS+
Sbjct: 475 DFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAE 534
Query: 1717 FAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVLS 1896
A +VA KCG K S PS FQIRYGGYKGVVA+DPTS++KLSLR+SM KY+S+N LDVLS
Sbjct: 535 LAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLS 594
Query: 1897 WSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGEN 2076
WSKY+PCFLNRQ+ITLLSTLGV D VFEKKQREAV QLD+IL DPL+AQ+ALELMSPGEN
Sbjct: 595 WSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGEN 654
Query: 2077 TNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTLE 2256
TNILKEML CGYKP+ EPFLS MLQ FR++KLL+LR K RIF+P R MMGC+DET TLE
Sbjct: 655 TNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLE 714
Query: 2257 YGQVFVQVS 2283
YG+VFVQ+S
Sbjct: 715 YGEVFVQIS 723
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 870 bits (2248), Expect = 0.0
Identities = 449/729 (61%), Positives = 547/729 (75%), Gaps = 6/729 (0%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPR-TYAKVQFTDSRYAK 291
M KT+ V GFP++ SA+ IK FLE +G GTIEALE+K + G T+AKVQFT A+
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 292 MIIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKAT 471
II LCK ++Y +YLKA E D + +P PR M+ ITL+FGCQ+S++RF VLWKA
Sbjct: 61 FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120
Query: 472 DVDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVL-YPNARL---LLIQLFGAPRIY 639
+V V FG+ L+K F LSHG EY+L+LS E++WQI L +P ++ LLIQL GAP+IY
Sbjct: 121 NVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIY 180
Query: 640 KKLETSIYSFYKETPEDQWVRTTDFTPSC-IGQSSGLCLQLDYISNFLKNFEKDFVYYSV 816
+K + ++KE P+DQWVR DFTPSC IGQS LCL+L Y S L NF ++F YY
Sbjct: 181 EKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQ-LPNFRENFAYYKE 239
Query: 817 RETPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKLNAAFFRC 996
+ F +ESG+ + NL LVPI+ PP+G LP++ILFKI +LVQ GCL G L+ +FFR
Sbjct: 240 NDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRL 299
Query: 997 VNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICLDDGLVYV 1176
V+P+R I +IEHALEKLY KECCY+PV WL EQYR Y + P I LD GLVYV
Sbjct: 300 VDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY-VKKPVAGSPAISLDTGLVYV 358
Query: 1177 HRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLSPRVAAGI 1356
RVQ+TP +VYF GPEVN+SNRVLR++ IDNFLRVSF+DE K+ ST +SPR++
Sbjct: 359 RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKE- 417
Query: 1357 GNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDADYIRQWMG 1536
RT +Y R+LS ++NGI IGDK+FDFLAFSSSQLR+NS WMFA L A IR WMG
Sbjct: 418 -GRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMG 476
Query: 1537 DFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDGIGKISSG 1716
DFS IRNVAKYAARLGQSF SS ETL V+ +E+E+IPD+++ + TY FSDGIGKIS
Sbjct: 477 DFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQ 536
Query: 1717 FAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDNPKLDVLS 1896
A +VA KCG K S PS FQIRYGGYKGVVA+DPTS++KLSLR+SM KY+SDN LDVL+
Sbjct: 537 LAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLA 596
Query: 1897 WSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALELMSPGEN 2076
WSKYQP FLNRQ+ITLLSTLGV D VFEKKQR AV QLD+IL DP+ AQ+ALELMSPGEN
Sbjct: 597 WSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGEN 656
Query: 2077 TNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCMDETGTLE 2256
TN+LKEML CGYKP+ EPFLS MLQ FR++KLL+LR K RIF+P R MMGC+DET TLE
Sbjct: 657 TNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLE 716
Query: 2257 YGQVFVQVS 2283
YG+VFVQ+S
Sbjct: 717 YGEVFVQIS 725
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 865 bits (2235), Expect = 0.0
Identities = 451/741 (60%), Positives = 555/741 (74%), Gaps = 18/741 (2%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGP-RTYAKVQFTDSRYAK 291
M KT+ V GFP +AE +K FLE+++G GT+ AL+++ K+G R YA VQFT A
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAAD 60
Query: 292 MIIDL-CKSG-LFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWK 465
II L C++ L+Y SYL A + + VP PRT M I L+FGC+IS ++F+VLW+
Sbjct: 61 TIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWR 120
Query: 466 ATDVDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPR 633
+V V FG ++K+ FLLSH EYRL+L E++W+I L+ + LLIQL GAPR
Sbjct: 121 GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPR 180
Query: 634 IYKK--------LETSIYSFYKETPEDQWVRTTDFTPS-CIGQSSGLCLQLDYISNFLKN 786
I++K E+ +++F+KE P+DQWVRTTDFTPS IGQS+GLC++L Y L +
Sbjct: 181 IFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE-LPD 239
Query: 787 FEKDFVYYSVRETPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPG 966
F+++F YY E F +E+G+ + +L LVPIV PP G+ LPY ILFKI LVQ GC+ G
Sbjct: 240 FKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAG 299
Query: 967 MKLNAAFFRCVNPQR--VDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKP 1140
L++ F+R V+P R V I IEHAL+KLY KECCY+P WL +QYRKY TS +P
Sbjct: 300 PLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSS 359
Query: 1141 PTICLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMF 1320
P I LDDGLVYVHRVQVTP+RVYF GPE+N+SNRVLRHF IDNFLR+SFIDE+ +K+
Sbjct: 360 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 419
Query: 1321 STDLSPRVAAGIGNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVG 1500
STDLSPR ++ RT++Y R+LST+RNGI IGD++F+FLAFSSSQLRE+S WMFA
Sbjct: 420 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 479
Query: 1501 NLDADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTY 1680
L A IR+WMG+F IRNVAKYAARLGQSF SS ETLSV +E+E IPDVK+ Y
Sbjct: 480 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 539
Query: 1681 TFSDGIGKISSGFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLK 1860
FSDGIGK+S+ FA KVASKCG+K + PS FQIRYGGYKGVVA DPTS+KKLSLR SM K
Sbjct: 540 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRK 599
Query: 1861 YQSDNPKLDVLSWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKA 2040
Y+S+ KLDVL+WSKYQPCFLNRQ+I+LLSTLG+ D +FEKKQREAV QLD+IL DPLKA
Sbjct: 600 YESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 659
Query: 2041 QDALELMSPGENTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQ 2220
Q+ALELMSPGENTNILKE+L CGYKP+ EPFLS MLQ FR+SKLL+LR K RIFIP R
Sbjct: 660 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 719
Query: 2221 MMGCMDETGTLEYGQVFVQVS 2283
MMGC+DET TL YGQVFVQ+S
Sbjct: 720 MMGCLDETRTLNYGQVFVQIS 740
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 849 bits (2194), Expect = 0.0
Identities = 440/738 (59%), Positives = 549/738 (74%), Gaps = 15/738 (2%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRG-PRTYAKVQFTDSRYAK 291
M KT+ +SGFP+ SAE +K FLE +G GT+ A++++P K G R+YA VQF A+
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60
Query: 292 MIIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKAT 471
+II L L+Y SYL A + + VP PR + +TL+FGCQIS+++FS LW+
Sbjct: 61 LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRVG 120
Query: 472 DVDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIY 639
+V V FG L+++ F L++G VEYRLQL E+VWQI L+ A+ LLIQL GAPR+Y
Sbjct: 121 NVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRVY 180
Query: 640 KK--------LETSIYSFYKETPEDQWVRTTDFTPSC-IGQSSGLCLQLDYISNFLKNFE 792
+K LE +++++K+TP+DQWVR TDFT SC IG SS L L+L Y + L +
Sbjct: 181 EKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVD-LPDLR 239
Query: 793 KDFVYYSVRETPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMK 972
++FVYY E F +ESG+ F NL LVPIV PP G+ LP+ +FKI L+Q GCL G
Sbjct: 240 ENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPT 299
Query: 973 LNAAFFRCVNPQRV-DIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTI 1149
L+ F+R V+PQR+ ++ I +ALEKL+ KEC Y+P AWL EQYRKY T+ PKPP I
Sbjct: 300 LDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAI 359
Query: 1150 CLDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTD 1329
LD GLVYV RVQVTP++VYF GPE+N+SNRVLR + +YID FLRVSF+DEE K+FSTD
Sbjct: 360 ALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTD 419
Query: 1330 LSPRVAAGIGNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLD 1509
LSPR + + RT +Y R+LS +RNGI IGD++F+FLAFSSSQLR+NSLWMFA V
Sbjct: 420 LSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHS 479
Query: 1510 ADYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFS 1689
AD IRQW+GDF SIRNVAKYAARLGQSFGSSTETL+V +E E I D+++ R Y FS
Sbjct: 480 ADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFS 539
Query: 1690 DGIGKISSGFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQS 1869
DGIGKISS FA +VA KCG+K VPS FQIRY GYKGVVA+DPTS+ KLSLR+SM KY+S
Sbjct: 540 DGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYES 599
Query: 1870 DNPKLDVLSWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDA 2049
+ KLDVL++SK Q C+LNRQ+ITLLSTLGVGDRVFEKKQREAV QL++IL DPL+A++A
Sbjct: 600 ELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREA 659
Query: 2050 LELMSPGENTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMG 2229
L+LMS GE TNILKE+L+CGY+PN EPFLS MLQAFR+SKL +LR K RI IP R MMG
Sbjct: 660 LDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMG 719
Query: 2230 CMDETGTLEYGQVFVQVS 2283
C+DE TLEYG+VFVQ S
Sbjct: 720 CLDEMRTLEYGEVFVQFS 737
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 842 bits (2175), Expect = 0.0
Identities = 435/737 (59%), Positives = 539/737 (73%), Gaps = 14/737 (1%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRG-PRTYAKVQFTDSRYAK 291
M KT+ VSGFP+ +A ++ FLE+ +G GT+EAL+++ + G R YA VQFT +R A+
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 292 MIIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKAT 471
II L L+Y SYL A D + +P PR+ M +TL+FG Q S+++FS +W
Sbjct: 61 QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120
Query: 472 DVDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIY 639
+V V FG ++K+ F LSH EY+L L E++WQI L+ + LLIQL+GAPRIY
Sbjct: 121 NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180
Query: 640 KK--------LETSIYSFYKETPEDQWVRTTDFTPSC-IGQSSGLCLQLDYISNFLKNFE 792
++ E + +++++ P++QWVRTTDFTPSC IG SS LCL+L L NF
Sbjct: 181 ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQ-LPNFN 239
Query: 793 KDFVYYSVRETPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMK 972
++F YY E F +ESG F N LVPIV P G+ LPY ILF++ LVQ GCL G
Sbjct: 240 ENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299
Query: 973 LNAAFFRCVNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTIC 1152
L+ F+R V+P R+ ++ IE+ALEKLY KECCY+P W EQY+KY TS P+ P +
Sbjct: 300 LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 359
Query: 1153 LDDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDL 1332
LD GLVYV++VQ+TP +V+F GPEVN+SNRVLR + IDNFLRVSF+DEE K+ STD+
Sbjct: 360 LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 419
Query: 1333 SPRVAAGIGNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDA 1512
SPR ++ RT +Y R+LST++NGI IGDK+F+FLAFSSSQLRENS WMFA L A
Sbjct: 420 SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 479
Query: 1513 DYIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSD 1692
IR WMG F IRNVA+YAARLGQSFGSSTETLSVS +E+E IPD++V R G Y FSD
Sbjct: 480 ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 539
Query: 1693 GIGKISSGFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSD 1872
GIGKIS+ FA KVA KCG KG PS FQIRY GYKGVVA+DPTS+KKLSLRRSM KY+S+
Sbjct: 540 GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 599
Query: 1873 NPKLDVLSWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDAL 2052
N KLDVL+ SKYQPCFLNRQ+ITLLSTLGV D FE+KQREAV QLD++L DPL+AQ+AL
Sbjct: 600 NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 659
Query: 2053 ELMSPGENTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGC 2232
ELMSPGENTNILKEML CGY+P+ EPFLS MLQ FR+SKLL+LR K RIFIP R MMGC
Sbjct: 660 ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 719
Query: 2233 MDETGTLEYGQVFVQVS 2283
+DET TLE+GQVFV+ S
Sbjct: 720 LDETRTLEHGQVFVKFS 736
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 840 bits (2171), Expect = 0.0
Identities = 434/736 (58%), Positives = 546/736 (74%), Gaps = 13/736 (1%)
Frame = +1
Query: 115 MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 294
M KT+ V GF + SA +K+FLE +G T+ AL+++ K+ R +A VQFT S A +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 295 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNRDEMNGITLNFGCQISEDRFSVLWKATD 474
II L L+Y SYLKA E + + VP PR M +T+NFGCQ+SE++F VLWKA +
Sbjct: 61 IIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKADN 120
Query: 475 VDVVFGAKLKKMQFLLSHGEVEYRLQLSSESVWQIVLY----PNARLLLIQLFGAPRIYK 642
V + FG ++K++FLLS+ +Y+L+L E++WQI L ++ LLIQLFGAPRIY+
Sbjct: 121 VTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYE 180
Query: 643 K--------LETSIYSFYKETPEDQWVRTTDFTPS-CIGQSSGLCLQLDYISNFLKNFEK 795
K + + +++K+ P+DQWVRTTDFT S CIGQSS L L+L + L NF +
Sbjct: 181 KEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQ-LPNFRE 239
Query: 796 DFVYYSVRETPFYIESGTPFCANLPLVPIVQPPRGLELPYRILFKICSLVQTGCLPGMKL 975
+F YY E +ESG+ + NL LVPIV P R ++LP+ ILFK+ LVQ GC+PG L
Sbjct: 240 NFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPAL 299
Query: 976 NAAFFRCVNPQRVDIKYIEHALEKLYFAKECCYDPVAWLLEQYRKYRTSEEQPKPPTICL 1155
+ F+R V+P R+ YI+HALEKLY+ +ECCY+P WL E+Y+ + S + PTI L
Sbjct: 300 DDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISL 359
Query: 1156 DDGLVYVHRVQVTPTRVYFSGPEVNMSNRVLRHFSNYIDNFLRVSFIDEEWNKMFSTDLS 1335
D+GLVYV RVQ+TP+RVYF GPE+N+SNRVLR F N IDNFLR+SF+DEE K+ ST++
Sbjct: 360 DEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQ 419
Query: 1336 PRVAAGIGNGRTKLYERVLSTMRNGIRIGDKRFDFLAFSSSQLRENSLWMFAPVGNLDAD 1515
R RT +Y+R+LST+RNGI IG+KRF+FLAFSSSQLRENS WMFA L A
Sbjct: 420 AR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAA 473
Query: 1516 YIRQWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSHNEVEHIPDVKVVRDGKTYTFSDG 1695
IR WMG+FS IRNVAKYAARLGQSF SSTETLSVS +E+ IPD+++++DG Y FSDG
Sbjct: 474 DIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDG 533
Query: 1696 IGKISSGFAIKVASKCGIKGSVPSTFQIRYGGYKGVVAIDPTSTKKLSLRRSMLKYQSDN 1875
IGKIS+ FA KVA+KC +KG PS FQIR GG+KGVVAIDPTS+ KLSLR+SM KY+S+N
Sbjct: 534 IGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESEN 593
Query: 1876 PKLDVLSWSKYQPCFLNRQIITLLSTLGVGDRVFEKKQREAVAQLDSILVDPLKAQDALE 2055
KLDVL+WSKYQPCFLNRQ+ITLLSTLGV DR FEKKQRE V QL+++L DPL+AQ+ALE
Sbjct: 594 TKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALE 653
Query: 2056 LMSPGENTNILKEMLNCGYKPNEEPFLSRMLQAFRSSKLLDLRIKARIFIPRARQMMGCM 2235
LMSPGENTNILKEML CGYKP+ EPFLS ML+ FR+SKLL+LR KARIF+ + R MMGC+
Sbjct: 654 LMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCL 713
Query: 2236 DETGTLEYGQVFVQVS 2283
DET TL YGQVFVQ S
Sbjct: 714 DETRTLNYGQVFVQFS 729