BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00001420
         (3484 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]  1876   0.0  
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...  1686   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1577   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1575   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1574   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1573   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1572   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1571   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1557   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1555   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1535   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1525   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1523   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...  1523   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1520   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1514   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1491   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...  1487   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1485   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1476   0.0  

>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score = 1876 bits (4859), Expect = 0.0
 Identities = 916/1065 (86%), Positives = 984/1065 (92%), Gaps = 2/1065 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V++EIG ++SRDEFVVGWRGP+TG DFLVDPFNGTCQI FT+DTAFSI+GEARPAVIKCN
Sbjct: 133  VTVEIGAMKSRDEFVVGWRGPRTGLDFLVDPFNGTCQILFTKDTAFSIKGEARPAVIKCN 192

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK+EFVPREIN+IKRYKDF+S+ +L QLAS P LYYRTADDDIEESVP+DLLDDDDPWIR
Sbjct: 193  FKMEFVPREINQIKRYKDFSSVVVLFQLASSPLLYYRTADDDIEESVPFDLLDDDDPWIR 252

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI--ERLRVQDEPDFG 2908
            TTDFVPSGAIGRSNTYRISVRPR+  QLEKALG+LQ RRVP       ERLRVQDEPDFG
Sbjct: 253  TTDFVPSGAIGRSNTYRISVRPRHLSQLEKALGYLQNRRVPVENGSPQERLRVQDEPDFG 312

Query: 2907 VPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKH 2728
            VPM DPFFCFQYKEGL+FKVMFMVNAVVHKGIINQHQ S  FFDLLR Q EE NLVALKH
Sbjct: 313  VPMADPFFCFQYKEGLNFKVMFMVNAVVHKGIINQHQTSKQFFDLLRSQPEELNLVALKH 372

Query: 2727 IYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVEL 2548
            IYSYKRP YDA RALD+V KWL+KNPKLLQRP+QMDDIVEVRRL+ITPSKAYCLPPEVEL
Sbjct: 373  IYSYKRPVYDAYRALDSVTKWLIKNPKLLQRPDQMDDIVEVRRLVITPSKAYCLPPEVEL 432

Query: 2547 SNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVR 2368
            SNRVLR Y++ISDRFLRVTFMDEAMQTLN NVLTYYAAPIVRE+T NL+PQ+TTMF+RVR
Sbjct: 433  SNRVLRNYKNISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREITSNLNPQRTTMFKRVR 492

Query: 2367 DILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAA 2188
            DILY+GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ T+V  IK WMGKFTNRNVAKCAA
Sbjct: 493  DILYQGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRKTSVVCIKTWMGKFTNRNVAKCAA 552

Query: 2187 RMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP 2008
            RMGQCFSSTYATVEVP +QAN K  DVERN Y+FSDGIGMIS+DLAKEVAEKLQ+ T LP
Sbjct: 553  RMGQCFSSTYATVEVPSAQANSK-SDVERNGYIFSDGIGMISADLAKEVAEKLQLRTKLP 611

Query: 2007 CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIV 1828
            CA+QIRYAGYKGVVACWPA  NG RLQLR SM+KFDS+HTTLEICSWTRFQPGFLNRQIV
Sbjct: 612  CAYQIRYAGYKGVVACWPAENNGHRLQLRPSMKKFDSDHTTLEICSWTRFQPGFLNRQIV 671

Query: 1827 TLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPS 1648
            TLLS+LEV D+ FWRMQELM++RLD ILEDPDMAFDVLT SC+D GNTAAMMLAAGFR  
Sbjct: 672  TLLSSLEVCDENFWRMQELMIARLDGILEDPDMAFDVLTASCSDQGNTAAMMLAAGFRSH 731

Query: 1647 NEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLED 1468
             EPHLRGML SIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS PSLED
Sbjct: 732  TEPHLRGMLMSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSKPSLED 791

Query: 1467 CFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKG 1288
            CFA HGSEFS+TKK+LEVI GLVVIAKNPCLHPGDVRILEAVDV GL HL+DCL+FPQKG
Sbjct: 792  CFANHGSEFSETKKDLEVIKGLVVIAKNPCLHPGDVRILEAVDVRGLHHLYDCLVFPQKG 851

Query: 1287 ERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFF 1108
            ERPH NEASGSDLDGDLYFVTWDD LIPPSK+SW PMDYEPGEVK KPR VTHSDIIEFF
Sbjct: 852  ERPHANEASGSDLDGDLYFVTWDDTLIPPSKRSWLPMDYEPGEVKLKPREVTHSDIIEFF 911

Query: 1107 IKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKP 928
             KNMVNE+LGTICNAHVVHAD S+YGALDEKCIKLAELAAIAVDFPKTGKIV+MPP+LKP
Sbjct: 912  TKNMVNESLGTICNAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPDLKP 971

Query: 927  KLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGS 748
            ++YPDFMGKEELQSYKSTKILGKLYRR+RDAYN DYE S QLTYP++ I YD+ELE+TGS
Sbjct: 972  QMYPDFMGKEELQSYKSTKILGKLYRRVRDAYNLDYEASSQLTYPAD-ISYDQELEVTGS 1030

Query: 747  RDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAY 568
            +DFIADAWSCKCSYDGQL GLLGQYKVNSEDEVVTGHIWSMPK SSKKQGELKERLKHAY
Sbjct: 1031 KDFIADAWSCKCSYDGQLAGLLGQYKVNSEDEVVTGHIWSMPKFSSKKQGELKERLKHAY 1090

Query: 567  SALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPG 388
            +ALRKDYRKVFECM P FDQL DHEKNV YEQKASAWYQV+Y ++WV+KSKELQ++DD G
Sbjct: 1091 NALRKDYRKVFECMAPGFDQLPDHEKNVLYEQKASAWYQVTYQDNWVKKSKELQELDDSG 1150

Query: 387  KTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
            KTVLLSFAWIAADYL RIKIR+R+MENAIS KPIDSLGRYLADKI
Sbjct: 1151 KTVLLSFAWIAADYLARIKIRRRRMENAISGKPIDSLGRYLADKI 1195


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score = 1686 bits (4366), Expect = 0.0
 Identities = 817/1064 (76%), Positives = 927/1064 (87%), Gaps = 3/1064 (0%)
 Frame = -2

Query: 3435 IEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFK 3256
            +EIG LRSR+E VVGWRGP++G DFLVDPF+GTC++H  RDTAF  +GEAR A+IKC+F+
Sbjct: 136  VEIGSLRSREELVVGWRGPRSGVDFLVDPFSGTCKLHIKRDTAFCFKGEARSAIIKCDFR 195

Query: 3255 IEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTT 3076
            IEF PREI EIK Y+DF+S+ IL+QLAS P +YYRTADDDIEE    DLLDDDDPWIRTT
Sbjct: 196  IEFFPREIIEIKHYRDFSSLIILIQLASSPLIYYRTADDDIEEPATCDLLDDDDPWIRTT 255

Query: 3075 DFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI--ERLRVQDEPDFGVP 2902
            DF   GA GR NTYRISVRP N   L KAL +L++RRVP + +   +RL VQDEPDFG+P
Sbjct: 256  DFTSGGAFGRCNTYRISVRPHNGPHLLKALDYLRKRRVPVLDERTRQRLVVQDEPDFGMP 315

Query: 2901 MPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIY 2722
            + DPF C QYKEG+SFKVMF++NAV+HKGIINQHQ+S+   D+ RRQ E+ N VALKH+ 
Sbjct: 316  VLDPFLCIQYKEGISFKVMFLLNAVMHKGIINQHQISEQLLDMFRRQPEDVNTVALKHMC 375

Query: 2721 SYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSN 2542
            SYKRP YDA +A++ VQ+WL+KNPKLL+RP  MDDIVEVRRLIITP+KAYCLPPEVELSN
Sbjct: 376  SYKRPVYDAFKAVETVQRWLLKNPKLLERPRGMDDIVEVRRLIITPAKAYCLPPEVELSN 435

Query: 2541 RVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDI 2362
            RVLR Y++++DRFLRVTF DEAM TLN N LTYY  P+VR +T + +PQ+TT+F+R++DI
Sbjct: 436  RVLRHYKAVADRFLRVTFTDEAMSTLNKNALTYYVGPMVRGITSSSNPQRTTIFKRIKDI 495

Query: 2361 LYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARM 2182
            L+ GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK   V +IKNWMG+FTNRNVAKCAARM
Sbjct: 496  LHSGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKDIGVANIKNWMGRFTNRNVAKCAARM 555

Query: 2181 GQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLPCA 2002
            GQCFSSTYATVEVP  Q N KL D+ERN+YVFSDGIGM+S+DLA EVAEKLQ+ TNLP A
Sbjct: 556  GQCFSSTYATVEVPSKQVNSKLPDIERNDYVFSDGIGMLSADLAMEVAEKLQLTTNLPSA 615

Query: 2001 FQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIVTL 1822
            +QIRYAGYKGVVACWPA  +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQI+TL
Sbjct: 616  YQIRYAGYKGVVACWPAQSDGFRLSLRKSMKKFDSNHTVLEICSWTRFQPGFLNRQIITL 675

Query: 1821 LSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPSNE 1642
            LSALEV D+ FWRMQE M+SRL+ +LED D AFDVLT SCTD GNTAA+ML+AGF+P  E
Sbjct: 676  LSALEVGDEIFWRMQETMISRLNQMLEDTDTAFDVLTSSCTDQGNTAAIMLSAGFKPQTE 735

Query: 1641 PHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLEDCF 1462
            PHLRGML+SIRV+QLGDLRE++RIFV SGRWLMGCLDELGVLE+GQCFIQVS PSLEDCF
Sbjct: 736  PHLRGMLTSIRVAQLGDLRERARIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLEDCF 795

Query: 1461 AKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKGER 1282
             KHGSEFS  KK LEVI GLV IAKNPCLHPGDVRILEAVD PGL HL+DCL+FPQKGER
Sbjct: 796  VKHGSEFSGAKKKLEVIKGLVAIAKNPCLHPGDVRILEAVDCPGLHHLYDCLVFPQKGER 855

Query: 1281 PHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFFIK 1102
            PH NEASGSDLDGDLYFVTWD+NL+PPSK+SW PM+Y PGEVK+ PR V H+DIIEFF K
Sbjct: 856  PHTNEASGSDLDGDLYFVTWDENLMPPSKRSWTPMEYAPGEVKQLPREVKHTDIIEFFTK 915

Query: 1101 NMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKPKL 922
            NMVNE+LG ICNAHVVHAD+S+YGALDEKCIKLAELAAIAVDFPKTGKIV+MP ELKPKL
Sbjct: 916  NMVNESLGAICNAHVVHADSSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPAELKPKL 975

Query: 921  YPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGSRD 742
            YPDFMGK+E Q+YKS+KILGKLYR+I+D+ N DYE S + T  S NI YD+ELEI GS  
Sbjct: 976  YPDFMGKDEFQTYKSSKILGKLYRKIKDS-NYDYEESSENT--SVNIAYDQELEIAGSES 1032

Query: 741  FIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAYSA 562
            FI DAW+CKCSYDGQL GLLGQYKVNSE+EVVTGHIWSMPK SSKKQGELKERLKHAYS 
Sbjct: 1033 FITDAWNCKCSYDGQLTGLLGQYKVNSEEEVVTGHIWSMPKYSSKKQGELKERLKHAYST 1092

Query: 561  LRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDP-GK 385
            LRKD+RKVFE M  +FDQLSD EKN  +E+KASAWYQV+Y+ESWV+KSK+LQ VDD  GK
Sbjct: 1093 LRKDFRKVFESMDAEFDQLSDDEKNTMFERKASAWYQVTYNESWVKKSKDLQVVDDEVGK 1152

Query: 384  TVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
            TV+LSFAWIAADYL RIKIR+R+MENAIS KPIDSLGRYLADKI
Sbjct: 1153 TVMLSFAWIAADYLARIKIRRRRMENAISMKPIDSLGRYLADKI 1196


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1577 bits (4083), Expect = 0.0
 Identities = 773/1065 (72%), Positives = 891/1065 (83%), Gaps = 2/1065 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS RGEAR A+IKCN
Sbjct: 134  VSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCN 193

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FKIEF+ REINEIK+ KDFTS+ IL QLAS P ++YRTADDDIEESV +DLLDDDD WIR
Sbjct: 194  FKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIR 253

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFG 2908
            TTD   SGAIGR NTYRIS+RPRN    EKA+ +   RRVP V    R  LRV+DEPDFG
Sbjct: 254  TTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFG 313

Query: 2907 VPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKH 2728
            V M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR + EE NL ALKH
Sbjct: 314  VSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNLAALKH 372

Query: 2727 IYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVEL 2548
            ++SYK P  DA++ L  +QKWL+KNPKLL+R  ++DDIVEVRRL+ITP+KAYCLPP VEL
Sbjct: 373  MFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVEL 432

Query: 2547 SNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVR 2368
            SNRVLR Y+ ++DRFLRVTFMDE M+ LN NVLTYYAA IVRE+T N +PQ+T +FQRV+
Sbjct: 433  SNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVK 492

Query: 2367 DILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAA 2188
             IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAA
Sbjct: 493  SILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAA 552

Query: 2187 RMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP 2008
            RMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EVAEKL ++ N P
Sbjct: 553  RMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLNVNPP 612

Query: 2007 CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIV 1828
             A+QIRYAGYKGVVACWP   +G  L LR SM+KFDSNHT LEICSWTRFQPGFLNRQIV
Sbjct: 613  SAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIV 672

Query: 1827 TLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPS 1648
            TLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTAA+ML+AGF+P 
Sbjct: 673  TLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQ 732

Query: 1647 NEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLED 1468
            +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSLE+
Sbjct: 733  SEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLEN 792

Query: 1467 CFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKG 1288
            CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L HL+DCL+FPQKG
Sbjct: 793  CFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKG 852

Query: 1287 ERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFF 1108
            +RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+  R V H DII+FF
Sbjct: 853  DRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFF 912

Query: 1107 IKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKP 928
             KNMV E+LG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPKTGK+V+MP +LKP
Sbjct: 913  SKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKP 972

Query: 927  KLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGS 748
            K+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    ++I YD  L I GS
Sbjct: 973  KMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLVIPGS 1032

Query: 747  RDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAY 568
              FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KKQGELKERLKHAY
Sbjct: 1033 TVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAY 1092

Query: 567  SALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPG 388
            + LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+Y+  WV +S ELQ  D   
Sbjct: 1093 NTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAIS 1152

Query: 387  KTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             TV+LSFAWIAADYL RIKIR R ++ + S+KPI+SLGRYL DKI
Sbjct: 1153 STVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1575 bits (4077), Expect = 0.0
 Identities = 773/1065 (72%), Positives = 888/1065 (83%), Gaps = 2/1065 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            VSIE+GVL S+D+FVVGWRGP+TG DFLVDPFNG C+I FT+DTAFS RGEAR A+IKCN
Sbjct: 134  VSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFSFRGEARHAIIKCN 193

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FKIEF+ REINEIK+ KDFTS+ ILLQLAS P ++YRTADDDIEESV +DLLDDDD WIR
Sbjct: 194  FKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIR 253

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFG 2908
            TTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    R  LRV+DEPDFG
Sbjct: 254  TTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFG 313

Query: 2907 VPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKH 2728
            V M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR   EE NL ALKH
Sbjct: 314  VSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKH 372

Query: 2727 IYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVEL 2548
            ++SYK P  DA++ L  ++KWL+KNPKLL+R  ++DDIVEVRRL+ITP+KAYCLPP VEL
Sbjct: 373  MFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVEL 432

Query: 2547 SNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVR 2368
            SNRVLR Y+ ++DRFLRVTFMDE M+ LN NVLTYYAA IVRE+T N +PQ+T +FQRV+
Sbjct: 433  SNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVK 492

Query: 2367 DILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAA 2188
             IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAA
Sbjct: 493  SILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAA 552

Query: 2187 RMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP 2008
            RMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EVAEKL +  N P
Sbjct: 553  RMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAVEVAEKLHLSVNPP 612

Query: 2007 CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIV 1828
             A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQIV
Sbjct: 613  SAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIV 672

Query: 1827 TLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPS 1648
            TLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTAA+ML+AGF+P 
Sbjct: 673  TLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQ 732

Query: 1647 NEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLED 1468
            +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSLE+
Sbjct: 733  SEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLEN 792

Query: 1467 CFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKG 1288
            CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVPGL HL+DCL+FPQKG
Sbjct: 793  CFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKG 852

Query: 1287 ERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFF 1108
            +RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+  R V H DII+FF
Sbjct: 853  DRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQMGRQVNHMDIIDFF 912

Query: 1107 IKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKP 928
             KNMV E+LG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPKTGK+V+MP +LKP
Sbjct: 913  SKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKP 972

Query: 927  KLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGS 748
            K+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L     +I YD  LEI GS
Sbjct: 973  KMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGS 1032

Query: 747  RDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAY 568
              FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KKQGELKERLKHAY
Sbjct: 1033 TAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAY 1092

Query: 567  SALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPG 388
            + LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+Y+  WV +S ELQ  D   
Sbjct: 1093 NTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVS 1152

Query: 387  KTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             TV+LSFAWIAADYL RIKIR R ++ + S+KPI+SLGRYL D I
Sbjct: 1153 STVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1574 bits (4076), Expect = 0.0
 Identities = 770/1065 (72%), Positives = 888/1065 (83%), Gaps = 2/1065 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            VS+E+GVL S+D+FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS RGEAR A+IKCN
Sbjct: 134  VSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCN 193

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FKIEF+ REINEIK+ KDFTS+ IL QLAS P ++YRTADDDIEESV +DLLDDDD WIR
Sbjct: 194  FKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIR 253

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFG 2908
            TTD   SGAIGR NTYRIS+RPRN    EKA+ +   RRVP V    R  LRV+DEPDFG
Sbjct: 254  TTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFG 313

Query: 2907 VPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKH 2728
            V M DPFFCFQ  EG+SF+V+F+VNAV+HKGI+NQHQM++ FF LLR   EE N  ALKH
Sbjct: 314  VSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEEVNSAALKH 372

Query: 2727 IYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVEL 2548
            ++SYK P  DA++ L  +QKWL+KNPKLL R  ++DDIVEVRRL+ITP+KAYCLPP VEL
Sbjct: 373  MFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVEL 432

Query: 2547 SNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVR 2368
            SNRVLR Y+ ++DRFLRVTFMDE M+ LN NVLTYYAA IVRE+T N +PQ+T +FQRV+
Sbjct: 433  SNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVK 492

Query: 2367 DILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAA 2188
             IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAA
Sbjct: 493  SILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAA 552

Query: 2187 RMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP 2008
            RMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EVAEKL +  N P
Sbjct: 553  RMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPP 612

Query: 2007 CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIV 1828
             A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQIV
Sbjct: 613  SAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIV 672

Query: 1827 TLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPS 1648
            TLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTAA+ML+AGF+P 
Sbjct: 673  TLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQ 732

Query: 1647 NEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLED 1468
            +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSLE+
Sbjct: 733  SEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLEN 792

Query: 1467 CFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKG 1288
            CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L HL+DCL+FPQKG
Sbjct: 793  CFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKG 852

Query: 1287 ERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFF 1108
            +RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+  R V H DII+FF
Sbjct: 853  DRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFF 912

Query: 1107 IKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKP 928
             KNMV E+LG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPKTGK+V+MP +LKP
Sbjct: 913  SKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKP 972

Query: 927  KLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGS 748
            K+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    ++I YD  LEI GS
Sbjct: 973  KMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGS 1032

Query: 747  RDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAY 568
              FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTG+IWSMPK ++KKQGELKERLKHAY
Sbjct: 1033 TTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGELKERLKHAY 1092

Query: 567  SALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPG 388
            + LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+YH  WV +S ELQ  D   
Sbjct: 1093 NTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLADAVS 1152

Query: 387  KTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             TV+LSFAWIAADYL RIKIR R+++ + S+KPI+SLGRYL D I
Sbjct: 1153 NTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1573 bits (4074), Expect = 0.0
 Identities = 771/1065 (72%), Positives = 887/1065 (83%), Gaps = 2/1065 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNGTC+I FT+DTAFS RGEAR A+IKCN
Sbjct: 134  VSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFSFRGEARHAIIKCN 193

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FKIEF+ REINEIK+ KDFTS+ ILLQLAS P ++YRTADDDIEESV +DLLDDDD WIR
Sbjct: 194  FKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIR 253

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFG 2908
            TTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    R  LRV+DEPDFG
Sbjct: 254  TTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVKDEPDFG 313

Query: 2907 VPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKH 2728
            V M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR + EE N  ALKH
Sbjct: 314  VSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNSAALKH 372

Query: 2727 IYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVEL 2548
            ++SYK P  DA++ L  +QKWL+KNPKLL R  ++DDIVEVRRL+ITP+KAYCLPP VEL
Sbjct: 373  MFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVEL 432

Query: 2547 SNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVR 2368
            SNRVLR Y+ ++DRFLRVTFMDE M+ LN NVLTYYAA IVRE+T N +PQ+T +FQRV+
Sbjct: 433  SNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVK 492

Query: 2367 DILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAA 2188
             IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAA
Sbjct: 493  SILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAA 552

Query: 2187 RMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP 2008
            RMGQCFSSTYATVEVP  + N +L D+ERN YVFSDGIGMIS+DLA EVAEKL +  N P
Sbjct: 553  RMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPP 612

Query: 2007 CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIV 1828
             A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQIV
Sbjct: 613  SAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIV 672

Query: 1827 TLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPS 1648
            TLLS+L+V+D  FW MQ+ M+S LD +L D D+AFDV+T SC + GNTAA+ML+AGF+P 
Sbjct: 673  TLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQ 732

Query: 1647 NEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLED 1468
            +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSLE+
Sbjct: 733  SEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLEN 792

Query: 1467 CFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKG 1288
            CF KHG +FS  K+NL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L HL+DCL+FPQKG
Sbjct: 793  CFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKG 852

Query: 1287 ERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFF 1108
            +RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+  R V H DII+FF
Sbjct: 853  DRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFF 912

Query: 1107 IKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKP 928
             KNMV E+LG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPKTGK+V+MP +LKP
Sbjct: 913  SKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKP 972

Query: 927  KLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGS 748
            K+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    ++I YD  LEI GS
Sbjct: 973  KMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDSTLEILGS 1032

Query: 747  RDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAY 568
              FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KKQGELKERLKHAY
Sbjct: 1033 TAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAY 1092

Query: 567  SALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPG 388
            + LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+YH  WV +S ELQ  D   
Sbjct: 1093 NTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLPDAVS 1152

Query: 387  KTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             TV+LSFAWIAADYL RIKIR R+++ + S+KPI+SLGRYL D I
Sbjct: 1153 NTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1572 bits (4071), Expect = 0.0
 Identities = 771/1065 (72%), Positives = 886/1065 (83%), Gaps = 2/1065 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            VS+E+GVL S+ +FVVGWRGP+TG DFLVDPFNGTC+I FT+DT FS RGEAR A+IKCN
Sbjct: 134  VSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFSFRGEARHAIIKCN 193

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FKIEF+ REINEIK+ KDF S+ ILLQLAS P ++YRTADDDIEESV +DLLDDDD WIR
Sbjct: 194  FKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIR 253

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFG 2908
            TTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    R  LRV+DEPDFG
Sbjct: 254  TTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFG 313

Query: 2907 VPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKH 2728
            V M DPFFCFQ  EG+SFKV+F+ NAV+HKGI+NQHQM + FF LLR   EE NL ALKH
Sbjct: 314  VSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLRSHQEEVNLAALKH 372

Query: 2727 IYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVEL 2548
            ++SYK P  DA++ L  +QKWL+KNPKLL+R  ++DDIVEVRRL+ITP+KAYCLPP VEL
Sbjct: 373  MFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVEL 432

Query: 2547 SNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVR 2368
            SNRVLR Y+ ++DRFLRVTFMDE M+ LN NVLTYYAA IVRE+T N +PQ+T +FQRV+
Sbjct: 433  SNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVK 492

Query: 2367 DILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAA 2188
             IL KGF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAA
Sbjct: 493  SILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAA 552

Query: 2187 RMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP 2008
            RMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EVAEKL +  N P
Sbjct: 553  RMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPP 612

Query: 2007 CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIV 1828
             A+QIRYAG KGVVACWP   +G RL LR SM+KFDSNHT LEICSWTRFQPGFLNRQIV
Sbjct: 613  AAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIV 672

Query: 1827 TLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPS 1648
            TLLS+L+V+D  FW MQ+ M++ LD +L D D+AFDV+T SC + GNTAA+ML+AGF+P 
Sbjct: 673  TLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQ 732

Query: 1647 NEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLED 1468
            +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSLE+
Sbjct: 733  SEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLEN 792

Query: 1467 CFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKG 1288
            CF KHGS+FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVP L HL+DCL+FPQKG
Sbjct: 793  CFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKG 852

Query: 1287 ERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFF 1108
            +RPH NEASGSDLDGDLYFVTWD+N+IPPSKKSW PM+YEP EVK+  R V H DII+FF
Sbjct: 853  DRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFF 912

Query: 1107 IKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKP 928
             KNMV E+LG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPKTGK+V+MP +LKP
Sbjct: 913  SKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKP 972

Query: 927  KLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGS 748
            K+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L    ++I YD  LEI GS
Sbjct: 973  KMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGS 1032

Query: 747  RDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAY 568
              FI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KKQGELKERLKHAY
Sbjct: 1033 TTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAY 1092

Query: 567  SALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPG 388
            + LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+YH  WV +S ELQ  D   
Sbjct: 1093 NTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQIPDAVS 1152

Query: 387  KTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             TV+LSFAWIAADYL RIKIR R +  + S+KPI+SLGRYLADKI
Sbjct: 1153 STVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1571 bits (4068), Expect = 0.0
 Identities = 768/1065 (72%), Positives = 887/1065 (83%), Gaps = 2/1065 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            VS+E+GVL S+D+FVVGWRGP+TG DF VDPFNG C+I FT+DTAFS RGEA+ A+IKCN
Sbjct: 134  VSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFSFRGEAKHAIIKCN 193

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FKIEF+ REINEIK++KDFTS+ ILLQLAS P ++YRTADDDIEESV +DLLDDDD WIR
Sbjct: 194  FKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIR 253

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFG 2908
            TTD   SGAIGR NTYRIS+RPRN    EKA+ +    RVP V    R  LRV+DEPDFG
Sbjct: 254  TTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFG 313

Query: 2907 VPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKH 2728
            V M DPFFCFQ  EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR   EE NL ALKH
Sbjct: 314  VSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKH 372

Query: 2727 IYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVEL 2548
            ++SYK P  DA++ L  +QKWL+KNPKLL+R  ++DDIVEVRRL+ITP+KAYCLPP VEL
Sbjct: 373  MFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVEL 432

Query: 2547 SNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVR 2368
            SNRVLR Y+ ++DRFLRVTFMDE M+ LN NVLTYYAA IVRE+T N +PQ+T +FQRV+
Sbjct: 433  SNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVK 492

Query: 2367 DILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAA 2188
             IL +GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAA
Sbjct: 493  SILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAA 552

Query: 2187 RMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP 2008
            RMGQCFSSTYATVEVP S+ N +L D+ERN YVFSDGIGMIS+DLA EVAEKL +  N P
Sbjct: 553  RMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLALEVAEKLHLSVNPP 612

Query: 2007 CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIV 1828
             A+QIRYAG KGVVACWP   +G  L LR SM+KFDSNHT LEICSWTRFQPGFLNRQIV
Sbjct: 613  SAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIV 672

Query: 1827 TLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPS 1648
            TLLS+L+V+D  FW MQ+ M+S L+ +L D D+AFDV+T SC + GNTAA+ML+AGF+P 
Sbjct: 673  TLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQ 732

Query: 1647 NEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLED 1468
            +EPHLRGMLSSIR SQLGDLR K+RIFV SGRWLMGCLDELG LE GQCFIQVS+PSLE+
Sbjct: 733  SEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLEN 792

Query: 1467 CFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKG 1288
            CF KHG +FS  KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVPGL HL+DCL+FPQKG
Sbjct: 793  CFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKG 852

Query: 1287 ERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFF 1108
            +RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM+YEP EVK+  R V H DII+FF
Sbjct: 853  DRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFF 912

Query: 1107 IKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKP 928
             KNMV E+LG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPKTGK+V+MP +LKP
Sbjct: 913  SKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKP 972

Query: 927  KLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGS 748
            K+YPDFMGKEE QSYKS KILGKLYR+++D  + + E S  L     +I YD  LEI GS
Sbjct: 973  KMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGS 1032

Query: 747  RDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAY 568
              F+ DAW+CKCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KKQGELKERLKHAY
Sbjct: 1033 TVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAY 1092

Query: 567  SALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPG 388
            + LRK++R VFE M PDFD L D EKN  YE+KASAWYQV+Y+  WV +S ELQ  D   
Sbjct: 1093 NMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVS 1152

Query: 387  KTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             TV+LSFAWIAADYL RI IR R ++ + S+KPI+SLGRYL D I
Sbjct: 1153 STVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1557 bits (4031), Expect = 0.0
 Identities = 759/1065 (71%), Positives = 883/1065 (82%), Gaps = 2/1065 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V +EIGVL S D+FVVGWRGP +G +FLVDPFNGTC+I FTRDTAF  +GE + AVIKCN
Sbjct: 134  VGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFCFKGEGKHAVIKCN 193

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FKIEF+ REINEI   KDF S+ +LLQL S P ++YRTADDDIEESV +DLLDDDD WIR
Sbjct: 194  FKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESVAFDLLDDDDQWIR 253

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFG 2908
            TTD   SGAIGR NTYRIS+RPRN   L+KA+ + +E RVP V    R  LRV+DEPDFG
Sbjct: 254  TTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGNRQMLRVRDEPDFG 313

Query: 2907 VPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKH 2728
            V + +PFFCFQ  EG+SFKV+F+VNAV+ KGI+NQHQM+  FF LLR+  E  NL ALKH
Sbjct: 314  VSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLRKHQEGVNLAALKH 373

Query: 2727 IYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVEL 2548
            I+SYKRP  DA++ L +VQKWL KNP LL+R  Q+DD+VEVRRL+ITP+KAYCLPP VEL
Sbjct: 374  IFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVITPTKAYCLPPTVEL 433

Query: 2547 SNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVR 2368
            SNRVLRKY+ +SDRFLRVTFMDE M+ LN NVLTYYAA IVRE+T + +PQ+T +FQRV+
Sbjct: 434  SNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSSSNPQRTGIFQRVK 493

Query: 2367 DILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAA 2188
             IL KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V +I NWMGKF NRNVAKCAA
Sbjct: 494  SILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWMGKFGNRNVAKCAA 553

Query: 2187 RMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP 2008
            RMGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+S+DL+ EVA KLQ+  N P
Sbjct: 554  RMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSIEVAAKLQLSVNPP 613

Query: 2007 CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIV 1828
            CA+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSWTR QPGFLNRQI+
Sbjct: 614  CAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQII 673

Query: 1827 TLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPS 1648
            TLLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GNTAA+ML+AGF+P 
Sbjct: 674  TLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQ 733

Query: 1647 NEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLED 1468
            +EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDEL  LE GQCFIQVS+PSLE 
Sbjct: 734  SEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQGQCFIQVSSPSLET 793

Query: 1467 CFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKG 1288
            CF KHG +FS+ KKNL+VI GLVVIAKNPCLHPGDVRILEAVDVPGL HL+DCL+FPQKG
Sbjct: 794  CFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKG 853

Query: 1287 ERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFF 1108
            +RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PMDY P E K+  R V H+DII+FF
Sbjct: 854  DRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQLGRQVQHTDIIDFF 913

Query: 1107 IKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKP 928
             KNMV E+LG ICNAHVVHAD S++GALDEKC+KLAELAA+AVDFPKTGK+V+MP +LKP
Sbjct: 914  SKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKP 973

Query: 927  KLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGS 748
            K+YPDFMGKE  Q+Y+S KILGKLYR++ D Y+ +   S  L +  ++I YD  +EI G 
Sbjct: 974  KMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPKDIPYDTNIEILGY 1033

Query: 747  RDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAY 568
             DFI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KKQGELKERLKHAY
Sbjct: 1034 EDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKKQGELKERLKHAY 1093

Query: 567  SALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPG 388
            + LRK++R VFE M PDFD L   EKN  YE+KASAWY+V+YH  WV +S ELQ  D   
Sbjct: 1094 NTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWVTRSLELQLPDAVS 1153

Query: 387  KTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
              V+LSFAWIAADY+ RIKIRQR M+N+ S+KPI+ LGRYL +KI
Sbjct: 1154 NGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1555 bits (4025), Expect = 0.0
 Identities = 758/1064 (71%), Positives = 882/1064 (82%), Gaps = 1/1064 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V +EIGVL S D+FVVGWRGP +G +FLVDPFNG C+I FTRDTAF  +GE + AVIKCN
Sbjct: 134  VGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFCFKGEGKHAVIKCN 193

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FKIEF+ REINEI   KDF+S+ +LLQLAS P ++YRTADDDIEESV +DLLDDDD WIR
Sbjct: 194  FKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIR 253

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER-LRVQDEPDFGV 2905
            TTD   SGAIGR NTYR+S+RPRN    +KA+ + +E RVP V   E+ LRV++EPDFG 
Sbjct: 254  TTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQGEQMLRVRNEPDFGE 313

Query: 2904 PMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHI 2725
             + +PFFCFQ  EG+SFKV+F+VNAV+HKGI+NQHQM+  FF LLR+  E  NL ALKHI
Sbjct: 314  SVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRKHQEGVNLAALKHI 373

Query: 2724 YSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELS 2545
            +SYKRP  DA+R L +VQKWL  NP LL+R  Q+DD+VEVRRL+ITP+KAYCLPP VELS
Sbjct: 374  FSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITPTKAYCLPPTVELS 433

Query: 2544 NRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVRD 2365
            NRVLRKY+ ISDRFLRVTFMDE M+ LN N LTYYAA IVRE+T + +PQ+T +FQRV+ 
Sbjct: 434  NRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSSNPQRTGIFQRVKI 493

Query: 2364 ILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAAR 2185
            I+ KGFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V SI NWMGKF NRNVAKCAAR
Sbjct: 494  IVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMGKFGNRNVAKCAAR 553

Query: 2184 MGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLPC 2005
            MGQCFSSTYATVEV PS+ N +L D+ERN YVFSDGIGM+++DL+ EVA KLQ+  N PC
Sbjct: 554  MGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIEVAAKLQLSVNPPC 613

Query: 2004 AFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIVT 1825
            A+QIRYAG KGVVACWPA K+G RL LR SM+KFDSNHT LEICSWTR QPGFLNRQI+T
Sbjct: 614  AYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQIIT 673

Query: 1824 LLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPSN 1645
            LLS+LEV+D+ FW MQ+ M+S+LD IL D D+AFDV+T SC + GNTAA+ML+AGF+P +
Sbjct: 674  LLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQS 733

Query: 1644 EPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLEDC 1465
            EPHLRGML+SIR +QLGDLR K+R+FV SGRWLMGCLDELG LE GQCFIQVS+PSLE C
Sbjct: 734  EPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQCFIQVSSPSLETC 793

Query: 1464 FAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKGE 1285
            F KHG EFS+ KKNL+V+ GLVVIAKNPCLHPGDVRILEAVDVPGL HL+DCL+FPQKG+
Sbjct: 794  FVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGD 853

Query: 1284 RPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFFI 1105
            RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y P E K+  R V H+DII+FF+
Sbjct: 854  RPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLGRQVQHTDIIDFFL 913

Query: 1104 KNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKPK 925
            KNMV E+LG ICNAHVVHAD S++GA+DEKC+KLAELAA+AVDFPKTGK+V+MP +LKPK
Sbjct: 914  KNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPK 973

Query: 924  LYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGSR 745
            +YPDFMGKE  QSY+S KILGKLYR++ D Y+ +   S  L Y  ++I YD  LEI G  
Sbjct: 974  MYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKDIPYDTNLEIPGYE 1033

Query: 744  DFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAYS 565
            DFI DAW+ KCSYDGQL GLLGQYKVN E+EVVTGHIWSMPK S+KKQGELKERLKHAY+
Sbjct: 1034 DFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKKQGELKERLKHAYN 1093

Query: 564  ALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPGK 385
             LRK++R VFE M PDFD L   EKN  YE+KA AWY+V+YH  WV +S ELQ  D    
Sbjct: 1094 MLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWVTRSLELQLPDAVSN 1153

Query: 384  TVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             V+LSFAWIAADY+ RIKIRQR M+N  S+KPIDSLGRYL +KI
Sbjct: 1154 GVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1535 bits (3973), Expect = 0.0
 Identities = 732/1072 (68%), Positives = 883/1072 (82%), Gaps = 1/1072 (0%)
 Frame = -2

Query: 3465 TPGILNGVVSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEA 3286
            TP  L+GV  +EIG L SRDEF VGWRGP TG DFLVDPF+GTC+  F+R+TAFS +  A
Sbjct: 128  TPFKLSGV-GVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTA 186

Query: 3285 RPAVIKCNFKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLL 3106
              AVIKC+FK+EF+ R+INEIK+Y + + + +LLQLAS P+++YRTADDDIE SVP+DLL
Sbjct: 187  EHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLL 246

Query: 3105 DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQ 2926
            DDDDPWIRTTDF  SGAIGR ++YR+S+ PR+  +L KA+ FL+ERRV        +R++
Sbjct: 247  DDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIR 306

Query: 2925 DEPDFGVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFN 2746
            DEPDFG+PM DPFFC  +KEG++F V+F+VNAV+HKGI NQHQ+S++FFDLLR Q  E N
Sbjct: 307  DEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVN 366

Query: 2745 LVALKHIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCL 2566
            + ALKHIY Y+RP +DA + L   Q+WL+KNPK  +  +++DDI E+RRL+ITP+KAYCL
Sbjct: 367  VAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCL 426

Query: 2565 PPEVELSNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTT 2386
            PPEVELSNRVLRKY+ ++DRFLRVTFMDE +QT+N+N L Y+AAPIVR +T    PQKT 
Sbjct: 427  PPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTR 486

Query: 2385 MFQRVRDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRN 2206
            +F+RVR IL +GFYLCGR+YSFLAFSSNQLRDRSAWFFAED++  V +IK+WMGKFTN+N
Sbjct: 487  IFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKN 546

Query: 2205 VAKCAARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQ 2026
            +AKCAARMGQCFSSTYAT+EVPP + N  L D++RN Y FSDGIGMI+ DLA+EVAEKL+
Sbjct: 547  IAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLK 606

Query: 2025 MHTNLPCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGF 1846
               + PCA+QIRYAG KGVVACWP   +G RL LR+SM KF SNHT LEICSWTRFQPGF
Sbjct: 607  FDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGF 666

Query: 1845 LNRQIVTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLA 1666
            LNRQI+TLLSAL V D  FW+MQELMVS+L+ +L D D+AFDVLT SC + GN AA+ML+
Sbjct: 667  LNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLS 726

Query: 1665 AGFRPSNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVS 1486
            AGF+P  EPHLRGML+ +R +QL  LREK+RIFV SGRWLMGCLDELGVLE GQCFIQVS
Sbjct: 727  AGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVS 786

Query: 1485 TPSLEDCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCL 1306
               LE+CF KHGS+FS+TKKNL+V+ G VVIAKNPCLHPGD+RILEAVD PGL HL+DCL
Sbjct: 787  NSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 846

Query: 1305 IFPQKGERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHS 1126
            +FPQKGERPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+  E K+  R V H 
Sbjct: 847  VFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQ 906

Query: 1125 DIIEFFIKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSM 946
            DI+EFF KNM NENLG ICNAHVV AD S+YGALDEKC+ LAELAA AVDFPKTGKIVSM
Sbjct: 907  DIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSM 966

Query: 945  PPELKPKLYPDFMGKEELQSYKSTKILGKLYRRIRDAY-NQDYEPSPQLTYPSENIFYDR 769
            P +LKPK+YPDFMGKEE QSYKS KILG+LYR+I+DAY + D   S +L +   +I YD 
Sbjct: 967  PSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDL 1026

Query: 768  ELEITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELK 589
            +LE+ G+ DFI+DAW  KCSYDGQL GLL QYKV  E+EVVTGH+WSMPK SS+KQG+LK
Sbjct: 1027 DLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLK 1086

Query: 588  ERLKHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKEL 409
            ERLKH+Y+ L++++R+VFE M  DF QL D EKN+ YE+KASAWYQV+YH  W++KS EL
Sbjct: 1087 ERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLEL 1146

Query: 408  QKVDDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
            Q  D  G +V+LSFAWIAADYL RIKIR  ++ N  S+KP++SL +YLAD++
Sbjct: 1147 QDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1525 bits (3948), Expect = 0.0
 Identities = 732/1069 (68%), Positives = 871/1069 (81%), Gaps = 6/1069 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V +EIG L SRDEF+VGWRGP +G DFLVDPF+G C+  FTRDTAFS +G    AVI+C+
Sbjct: 135  VHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVIRCD 194

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK+EF+ R+INEIK+Y D + + ILLQLAS P ++YRTADDDIE  VP+DLLDDDDPWIR
Sbjct: 195  FKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDPWIR 254

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVP 2902
            TTDF PSGAIGR N+YR+S+ PR+  +L++AL FL+ERRV        L V  EP++ +P
Sbjct: 255  TTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPLHVTAEPEYEMP 314

Query: 2901 MPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIY 2722
            M DPFFC  ++EG+ F +MF+VNAV+HKGI NQHQ+SD+FFDLLR Q  + N+ AL+HI 
Sbjct: 315  MSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHIC 374

Query: 2721 SYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSN 2542
            SYK P +DA + L  VQ+WL+KNPKL +  +Q+DDIVE+RRL ITP++AYCLPPEVELSN
Sbjct: 375  SYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSN 434

Query: 2541 RVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDI 2362
            RVLR+Y+ I+D+FLRVTFMDE +QT+N N LTYY APIVR++T N   QKT +F+RV+ I
Sbjct: 435  RVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSI 494

Query: 2361 LYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARM 2182
            L  GFYLCGRKYSFLAFSSNQLRDRSAWFFAED  T+V  I+NWMGKFTNRN+AKCAARM
Sbjct: 495  LTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKCAARM 554

Query: 2181 GQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLPCA 2002
            GQCFSSTYATVEVP ++A   L D+ERNNY+FSDGIGMI+ DLAKEVAEKL++  N PCA
Sbjct: 555  GQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKLKLEVNPPCA 614

Query: 2001 FQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIVTL 1822
            +QIRYAG KGVVACWPA  +G RL LR SM KF SNHTTLEICSWTRFQPGFLNRQI+TL
Sbjct: 615  YQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITL 674

Query: 1821 LSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPSNE 1642
            LS L+V D+ FW+MQ +MVS+L+ +  D D+AFDV+T SC + GNTAA+ML+AGF P  E
Sbjct: 675  LSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNPKTE 734

Query: 1641 PHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLEDCF 1462
            PHL GML+ IR +QL  LREK+RIFV SGRWLMGCLDELGVLE+GQCFIQVS PSLE CF
Sbjct: 735  PHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLESCF 794

Query: 1461 AKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKGER 1282
             KHGS FS++KK L+V+ G VV+AKNPCLHPGD+RILEAVD P L HLHDCL+FPQKG+R
Sbjct: 795  WKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDR 854

Query: 1281 PHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFFIK 1102
            PH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+  E K+  R V H DII+FF K
Sbjct: 855  PHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAK 914

Query: 1101 NMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKPKL 922
            NMVNENLG ICNAHVVHAD S+YGALDE CIKLAELAA AVDFPKTGK+V+MPP LKPKL
Sbjct: 915  NMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKL 974

Query: 921  YPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSE------NIFYDRELE 760
            YPDFMGKE+ QSY S KILG+LYR+++D YN D +        SE      +I YD++LE
Sbjct: 975  YPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGDIPYDKDLE 1034

Query: 759  ITGSRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERL 580
            ++GS D+I DAW  KCSYDGQL GLL QYKV  E+EVVTGHIWSMPK +S+KQGELKERL
Sbjct: 1035 VSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSRKQGELKERL 1094

Query: 579  KHAYSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKV 400
            K +Y +L+K++R+VFE M  DF+QL++ EKN+ YEQKASAWYQV+YH  WV KS ELQ+ 
Sbjct: 1095 KQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMELQEP 1154

Query: 399  DDPGKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
            D  G   +LSFAWIAADYL RIKIR R  +   +SKP++SL +YLAD+I
Sbjct: 1155 DAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1523 bits (3944), Expect = 0.0
 Identities = 722/1066 (67%), Positives = 881/1066 (82%), Gaps = 3/1066 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V  EIG L SRDEF VGWRGP +G DFLVDPF+GTC+  F+R+TAFS++  +  AVIKC+
Sbjct: 135  VGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEHAVIKCD 194

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK+EF+ R+INEI +Y + + + +LLQLAS P ++YRTADDDIE  VP+DLLDDDDPWIR
Sbjct: 195  FKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDPWIR 254

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE---RLRVQDEPDF 2911
            TTDF  SGAIGR ++YR+S+ PR+  +L KA+ +L+ERRV  + +     R+R+ DEPDF
Sbjct: 255  TTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRILDEPDF 314

Query: 2910 GVPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALK 2731
            G+PM DPFFC  +KEG++F+V+F+VNAV+HKGI NQHQ+S++FFDLLR Q+ E N+ ALK
Sbjct: 315  GMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALK 374

Query: 2730 HIYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVE 2551
            HI +Y+RP ++A R L  VQ+WL+KNP L + P+Q+ D+VE+RRL+ITP+KAYCLPPEVE
Sbjct: 375  HICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVE 434

Query: 2550 LSNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRV 2371
            LSNRVLRKY+ ++DRFLRVTFMDE +Q +N+NVL YY APIVR++T N  PQKT +F+RV
Sbjct: 435  LSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRV 494

Query: 2370 RDILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCA 2191
            R IL +GFYLCGR+YSFLAFS+NQLRD+SAWFF+E+++ +V  +K+WMGKFTNRN+AKCA
Sbjct: 495  RSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTNRNIAKCA 554

Query: 2190 ARMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNL 2011
            ARMGQCFSSTYAT+EVPP + N  L D+ERN YVFSDGIG+I+ DLA+EVAEKL++  + 
Sbjct: 555  ARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKLKLDIDP 614

Query: 2010 PCAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQI 1831
            PCA+QIRYAG KGVVACWP   +G RL LR SM KF SNHTTLEICSWTRFQPGFLNRQI
Sbjct: 615  PCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQI 674

Query: 1830 VTLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRP 1651
            +TLLS L V D  FW+MQE MVS+L+ +  + D+AFDVLT SC D GN AA+ML+AGF+P
Sbjct: 675  ITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIMLSAGFKP 734

Query: 1650 SNEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLE 1471
              EPHLRGML+ +R +QL DLREK+RIFV SGRWLMGCLDELG+LE GQCFIQVS  SLE
Sbjct: 735  DREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLE 794

Query: 1470 DCFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQK 1291
             CF KHG++FS+ +KNL+VI G VVIAKNPCLHPGDVR+LEAVDVPGL HL+DCL+FPQK
Sbjct: 795  KCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQK 854

Query: 1290 GERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEF 1111
            GERPH NEASGSDLDGDLYFVTWD+NLIPPSK+SW PM Y+  E K   R V H DIIEF
Sbjct: 855  GERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNHQDIIEF 914

Query: 1110 FIKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELK 931
            F KNMVN+NLG ICNAHVVHAD S+YGA D+ C+ LAELAA AVDFPKTGK+VSMPP LK
Sbjct: 915  FAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVSMPPYLK 974

Query: 930  PKLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITG 751
            PK+YPDFMGKEE QSYKS KILG+LYR+I+DAY++D   S +L     +I YD +LE+ G
Sbjct: 975  PKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDIPYDSDLEVVG 1034

Query: 750  SRDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHA 571
            + D+I+DAW  KCSYDGQL GLL QYKV  E+EVVTGHIWSMPK SS+KQGELK+RLKH+
Sbjct: 1035 ASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELKDRLKHS 1094

Query: 570  YSALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDP 391
            Y++L+K++R++FE M  +F+QL D EKN  YEQKASAWYQV YH  WV+KS ELQ  D  
Sbjct: 1095 YNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLELQDPDGA 1154

Query: 390  GKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
            G +V+LSFAWIAADYL RIKIR R+  N  S+KP++SL +YLAD++
Sbjct: 1155 GTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score = 1523 bits (3943), Expect = 0.0
 Identities = 734/1063 (69%), Positives = 867/1063 (81%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V ++IG + SRDEF VGWRGP  G DFLVDPF+GTC+  F+RDTAFS +G    AVIKC+
Sbjct: 135  VCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTTEYAVIKCD 194

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK+EF+ R+INEIK+Y + + + + LQLAS P+++YRTADD+IEESVP+DLLDDDD WIR
Sbjct: 195  FKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLLDDDDQWIR 254

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVP 2902
            TTDF PSGAIGR NTYR+ +RPR+  +L+KAL +L+E+RVP       LR+ DEPDFG  
Sbjct: 255  TTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRISDEPDFGRS 314

Query: 2901 MPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIY 2722
            M DPF+C  YKEG+ F++MF+VNAV+HKGI NQHQ+S++FF+LLR Q  E N+ ALKHIY
Sbjct: 315  MSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVNVAALKHIY 374

Query: 2721 SYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSN 2542
            SY+RP +DA + L  V  WL++NP L + P+Q+DDIVE+RRL+ITP+KA+CL PEVELSN
Sbjct: 375  SYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCLLPEVELSN 434

Query: 2541 RVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDI 2362
            RVLRKY+ ++DRFLRVTFMDE MQT+N NVLTYYAA IVR+VT     QKT +F+RVR I
Sbjct: 435  RVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTGVFKRVRSI 494

Query: 2361 LYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARM 2182
            L  GFYLCGRKYSFLAFS+NQLRD SAWFFAED  T+V  I  WMGKFTNRN+AKCAARM
Sbjct: 495  LTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRNIAKCAARM 554

Query: 2181 GQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLPCA 2002
            GQCFSSTYATVEVP ++ N  L D+ERN YVFSDGIG I+ DLAKEVA+KL++  N PCA
Sbjct: 555  GQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLKLDLNPPCA 614

Query: 2001 FQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIVTL 1822
            +QIRYAG KGVVACWP   +G RL LR SM KF S+HTTLEICSWTRFQPGFLNRQI+TL
Sbjct: 615  YQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGFLNRQIITL 674

Query: 1821 LSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPSNE 1642
            LS   V D+ FW MQ  MVS+L+ IL D D+AF+VLT SC++ GN AA+ML+AGF+P  E
Sbjct: 675  LSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLSAGFKPQTE 734

Query: 1641 PHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLEDCF 1462
            PHLRG+L+ +R SQL  LREK+RIFV SGRWLMG LDELGVLE GQCFIQVS PS+E+CF
Sbjct: 735  PHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVSNPSVENCF 794

Query: 1461 AKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKGER 1282
             KHGS F++TKKN EVI GLVVIAKNPCLHPGD+RILEAVD PGL HL+DCL+FPQKGER
Sbjct: 795  LKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGER 854

Query: 1281 PHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFFIK 1102
            PH NEASGSDLDGDLYFVTW+D LIPP KKSWPPM Y+PGE KE  R V H DII+FF K
Sbjct: 855  PHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHKDIIDFFAK 914

Query: 1101 NMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKPKL 922
            NMVNE+LGTICNAHVVHAD S+YGALDEKCI LAELAA AVDFPKTGKIVSMP  LKPKL
Sbjct: 915  NMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSMPANLKPKL 974

Query: 921  YPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGSRD 742
            YPDFMGKEE QSYKS KILG+LYR I+D Y++D   S ++   S +I YD +LE+TGS D
Sbjct: 975  YPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINYDTDLEVTGSAD 1034

Query: 741  FIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAYSA 562
            +I DAW  KCSYD QL+GLLGQYKV  E+EVVTGHIWSMPK +S+K G+LKE+L H+Y A
Sbjct: 1035 YIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLKEKLGHSYGA 1094

Query: 561  LRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPGKT 382
            LRK++R++FE M  + +QL++ E+N  YE+KASAWYQV+YH  WVEK  ELQK D     
Sbjct: 1095 LRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKLELQKSDGADPV 1154

Query: 381  VLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
            V+LSFAWIAADYL RIKIR +   N   SKP++SL +YLADKI
Sbjct: 1155 VMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1520 bits (3935), Expect = 0.0
 Identities = 738/1066 (69%), Positives = 877/1066 (82%), Gaps = 3/1066 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V +EIG+L SRDE+  GWRGP +G DFLVDPF+GTC+  FT+DTAFS +G  + AVIKCN
Sbjct: 135  VRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMPKHAVIKCN 194

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK+EF+ REINE+++ +D +S+ +LLQL+S P +YYRTADDDIEE+VP+DLLDDDDPWIR
Sbjct: 195  FKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIR 254

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFG 2908
            TTDF  SGAIGR N+YRIS+ PR   +L+KA+ +L+ RRV  + D  +  LRV+DEPDFG
Sbjct: 255  TTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRDEPDFG 314

Query: 2907 VPMPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKH 2728
            +PM DPFFC Q+KEG+ F+VMF+VNAV+HKGIINQHQ+SD FFDLLR Q ++ N+ ALKH
Sbjct: 315  LPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKH 374

Query: 2727 IYSYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVEL 2548
            I SY+ P +DA + L  V KWL+KNPKLL+ P+++DDIVEVRRL+ITPSKAYCLPPEVEL
Sbjct: 375  ICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVEL 434

Query: 2547 SNRVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVR 2368
            SNRVLR Y+ +SDRFLRVTFMDE MQT+N NVL YY APIV+ +T N  PQKT +F+RV+
Sbjct: 435  SNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVK 494

Query: 2367 DILYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAA 2188
             IL  GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK T+V +IK+WMGKFTNRNVAKCAA
Sbjct: 495  TILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAA 554

Query: 2187 RMGQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP 2008
            RMGQCFSSTYATVEVP  +   +L D++RN Y FSDGIG I  DLA EVAEKL++    P
Sbjct: 555  RMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKLE-GTP 612

Query: 2007 CAFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIV 1828
             A+QIRYAG KGVVACWP+  +G RL  R SM KF S+HT LEICSWTRFQPGFLNRQIV
Sbjct: 613  SAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIV 672

Query: 1827 TLLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPS 1648
            TLLSAL V D  FW+MQE M+S+L+ +L D D+AFDVL  SC + GNTAA+ML+AGF+P 
Sbjct: 673  TLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQ 732

Query: 1647 NEPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLED 1468
             EPHL+GML+ IR +Q   LREK+RIFV SGRWLMGCLDELGVLE GQCFIQVS+PSLE+
Sbjct: 733  TEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLEN 792

Query: 1467 CFAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKG 1288
            CF KHGS FS  +KNL+VI G+V IAKNPCLHPGDVRILEAVD PGL+HL DCL+FPQKG
Sbjct: 793  CFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKG 851

Query: 1287 ERPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFF 1108
            +RPH NEASGSDLDGDLYFVTW++ LIPPSK+SWPPM Y+  E K   R VT  DII+FF
Sbjct: 852  DRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFF 911

Query: 1107 IKNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKP 928
             KNMVNENLG ICNAHVVHAD S+YGALDE C+ LAE AA AVDFPKTGK+V++PP LKP
Sbjct: 912  TKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKP 971

Query: 927  KLYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGS 748
            K+YPDFMGKEE Q+Y+S KILGK+YR+I+DAYN+D   S +  + ++ + +D +L I GS
Sbjct: 972  KMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGS 1031

Query: 747  RDFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAY 568
             DFI DAW  KCSYDGQL GLLGQYKV  E+EVVTGH+WSMPK  S+KQGEL ERLKHAY
Sbjct: 1032 ADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAY 1091

Query: 567  SALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDP- 391
            S+L+K++R++FE M  DFDQL+D EKN  YEQKASAWYQV+YH +WV+KS ELQ  D+  
Sbjct: 1092 SSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVF 1151

Query: 390  GKTVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
            G+ V+LSFAWI ADYL RIKIR++   N  SSKPI+SL R+L D+I
Sbjct: 1152 GERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1514 bits (3920), Expect = 0.0
 Identities = 724/1064 (68%), Positives = 873/1064 (82%), Gaps = 1/1064 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V +EIG L  RDEF V WRGP  G DFLVDPF+G C+  FTRDTAFS +  A+ A++KC+
Sbjct: 131  VIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFKDMAKLAMMKCD 190

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK+EF+ R+INEIK+Y D + + +LL LAS P+++YRTADDDIE SVP+DLLDDDDPWIR
Sbjct: 191  FKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPFDLLDDDDPWIR 250

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVP 2902
            TTDF PSGAIGR N+YR+S+ PR+  +L+KA+ +L+ERRV      + LR+Q EPDF VP
Sbjct: 251  TTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKALRIQSEPDFAVP 310

Query: 2901 MPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIY 2722
            M DP F    K G+ F++MF++N +VHKGI NQH +SD  FDL R Q  E NL ALKHI 
Sbjct: 311  MSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQPREINLAALKHIS 370

Query: 2721 SYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSN 2542
            SYKRP +DA   L NVQ+WL++NPKLL+ P Q+DDI EVRRL+ITP++AYCLPPEVELSN
Sbjct: 371  SYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYCLPPEVELSN 430

Query: 2541 RVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDI 2362
            RVLRKY+ +SDRFLRVTFMDE MQT+N NVLTYY APIV+E+T N + QKT +F+RV+ +
Sbjct: 431  RVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTKVFKRVKSL 490

Query: 2361 LYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARM 2182
            L  GFYLCG++YSFLAFSSNQLRDRSAWFFAED   TV+ IK WMG+F NRN+AKCAARM
Sbjct: 491  LTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGRFNNRNIAKCAARM 550

Query: 2181 GQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLPCA 2002
            GQCFSSTYATVEVP ++ N  L+++ERN YVFSDGIGMI+ DLAKEVAEKL++  N P A
Sbjct: 551  GQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKLKLDINPPSA 610

Query: 2001 FQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIVTL 1822
            +QIRYAG KGVVACWP   +G RL LR SM KFDS HT LEICSWTRFQPGFLNRQIVTL
Sbjct: 611  YQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGFLNRQIVTL 670

Query: 1821 LSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPSNE 1642
            LS L V D+ FW+MQE M+ +L+ +L D D+AF+VLT SC + GN  A+ML+AGF+P +E
Sbjct: 671  LSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLSAGFKPQSE 730

Query: 1641 PHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLEDCF 1462
            PHL+GML+ IR +QL  LREK+RIFV  GRWLMGCLDELGVLE GQCFIQVSTPSLE+CF
Sbjct: 731  PHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVSTPSLENCF 790

Query: 1461 AKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKGER 1282
            +KHGS FS+TK NLEVI G VVIAKNPCLHPGD+RILEAVDVPGL HL+DCL+FPQKG+R
Sbjct: 791  SKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCLVFPQKGDR 850

Query: 1281 PHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFFIK 1102
            PH NEASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y+P + +  PR VT  DII+FF +
Sbjct: 851  PHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVTQKDIIDFFSR 910

Query: 1101 NMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKPKL 922
            NMVNE+LG ICNAHVVHAD S YGALDEKC+ LAELAAIAVDFPKTG IV+MP  LKPK+
Sbjct: 911  NMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTMPAHLKPKI 970

Query: 921  YPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGSRD 742
            YPDFMGKEE QSYKSTKI+G+LYR+I+D Y+ D  PS +L   S NI +D +LE+ G+ D
Sbjct: 971  YPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFDTDLEVPGAAD 1030

Query: 741  FIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAYSA 562
            F+ DAW  KCSYDGQL GL+ QYKV  E+EVVTG IWSMPK +S+K+G+LKERLKH+Y+ 
Sbjct: 1031 FLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDLKERLKHSYTG 1090

Query: 561  LRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKEL-QKVDDPGK 385
            LRK++R+VFE +  DF+QL+D EKNV YE++ASAWYQ++YH  WV+KS+++  ++++   
Sbjct: 1091 LRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKWVKKSQDMHDQLEEVKN 1150

Query: 384  TVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             V+LSFAWIAADYL RIKIR R + +A S+KPI+SLG+YLAD+I
Sbjct: 1151 VVMLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1491 bits (3861), Expect = 0.0
 Identities = 723/1064 (67%), Positives = 870/1064 (81%), Gaps = 1/1064 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V +EIG L SRDEF V WRGP +G DFLVDPF+GTC+  FTRD AF+++     AVIKC 
Sbjct: 135  VCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCE 194

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK+EF+ REIN +K+Y +F+ + ILLQLAS P+++YRTADDDI   VP+D+LDDDDPWIR
Sbjct: 195  FKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIR 254

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVP 2902
            TTDF PSGAIGR N+YRIS+  R+R +L K + +L ERRV        + +++EPDF VP
Sbjct: 255  TTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVP 314

Query: 2901 MPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIY 2722
            M DPFFC  Y+EG+SF++MF+VNAV+HKGIINQHQ+SD+FFDLLR Q+ E N+ ALKHIY
Sbjct: 315  MSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIY 374

Query: 2721 SYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSN 2542
            SYK P +DA + L  VQ+WL+K+P+L + P+Q+DDIVEVRRL+ITP+KAYCLPPEVELSN
Sbjct: 375  SYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSN 434

Query: 2541 RVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDI 2362
            RVLRKY+ ++DRFLRVTFMDE +QT+N NVL+Y+ APIVR++T N   QKT +F+RVR I
Sbjct: 435  RVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSI 494

Query: 2361 LYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARM 2182
            L  GFYLCGRK+SFLAFSS+QLRD SAWFF+ED  T+V  IK WMG+FT++N+AKCAARM
Sbjct: 495  LSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARM 554

Query: 2181 GQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLP-C 2005
            GQCFSSTYATVEVPP++ + +L D++RN YVFSDGIG I+ DLA EVA+KL++  N P C
Sbjct: 555  GQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPC 614

Query: 2004 AFQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIVT 1825
            A+QIRYAG KGVVACWPA  +G R+ LR SM KF S+HTTLEICSWTRFQPGFLNRQI+T
Sbjct: 615  AYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIIT 674

Query: 1824 LLSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPSN 1645
            LLS L V D+ FW MQ+ M+S+L+ +L D D+AF+VLT +C + GNTAA+ML+AGF P  
Sbjct: 675  LLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQT 734

Query: 1644 EPHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLEDC 1465
            EPHLRGML+ IR +QL  LREK+RIFV +GRWLMGCLDELGVLE GQCFIQVS P L +C
Sbjct: 735  EPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNC 794

Query: 1464 FAKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKGE 1285
            F+KHGS F++TKK L+VI G VVIAKNPCLHPGD+RILEAVD P L HL+DCL+FPQKG+
Sbjct: 795  FSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGD 853

Query: 1284 RPHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFFI 1105
            RPH NEASGSDLDGDLYFVTWD+NLIPPSKKSWPPM+Y   E K   R V   DIIEFF 
Sbjct: 854  RPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFA 913

Query: 1104 KNMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKPK 925
            K+MVNENLGTICNAHVVHAD S+YGALDE CI LAELAA AVDFPKTGKIV+MP  LKPK
Sbjct: 914  KHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPK 973

Query: 924  LYPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGSR 745
            LYPDFMGKE  QSYKS KILG+LYR+ +DAY++D   S ++     +I YD +LE+  S 
Sbjct: 974  LYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESV 1033

Query: 744  DFIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAYS 565
            DFIADAW+ KCSYDGQL GLL QYKVN E+E+VTGHIWSMPK +S+KQGELKERLKH+YS
Sbjct: 1034 DFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYS 1093

Query: 564  ALRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPGK 385
            ALRK++R+VFE M  D + LS+ EKN  +E+KASAWYQV+YH  WV+KS +LQ+ D    
Sbjct: 1094 ALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARS 1153

Query: 384  TVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             VLLSFAWIA DYL RIKIR R+M N  +SKP++ L RY+AD+I
Sbjct: 1154 VVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1487 bits (3849), Expect = 0.0
 Identities = 713/1064 (67%), Positives = 870/1064 (81%), Gaps = 1/1064 (0%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V +EIG L  +DEF   WRGP  G DF+VDPF+GTC+  FT DTAFS +G  + AVIKC+
Sbjct: 134  VHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAVIKCD 193

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK+EF+ REI EIK+Y D + + ILL+L S P + YRTADDDI++SVP+DLLDDDDPWIR
Sbjct: 194  FKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLLDDDDPWIR 253

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVP 2902
            TTDF PSGAIGR N+YR+ + PR+  +L+KA+ +L+ERRV  V      ++QDEPDFG+ 
Sbjct: 254  TTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPKIQDEPDFGMS 313

Query: 2901 MPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIY 2722
              +PFF  QY+EG+SF++MF+VNAV+HKG +NQHQ+SD+FF LLR Q +E N+ ALKH+ 
Sbjct: 314  NTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEINVAALKHLC 373

Query: 2721 SYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSN 2542
            SY+ P +DA   L  VQ WL+KNPKL++ P+++DDI EVRRL+ITP+KAYCLPPEVELSN
Sbjct: 374  SYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCLPPEVELSN 433

Query: 2541 RVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDI 2362
            RVLRKY+ ++DRFLRVTFMDE MQ +N+NVL YY APIV+E+T N   QKT +F+R R I
Sbjct: 434  RVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTNVFKRFRTI 493

Query: 2361 LYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARM 2182
            L  GFYLCGRKY+FLAFSSNQLRDRSAWFFAE  + +V  I +WMGKF N+NVAKCAARM
Sbjct: 494  LNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGKFNNKNVAKCAARM 553

Query: 2181 GQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLPCA 2002
            GQCFSSTYATVEV  S+ N  + D++RN YVFSDGIGMI+ DLA EVAEKL++  N PCA
Sbjct: 554  GQCFSSTYATVEVTSSEVND-IPDIKRNGYVFSDGIGMITPDLALEVAEKLKLDRNPPCA 612

Query: 2001 FQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIVTL 1822
            +QIR+AG KGVVACWP+  +G RL LRTSM KF+S HTTLEICSWTR+QPGFLNRQI+TL
Sbjct: 613  YQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGFLNRQIITL 672

Query: 1821 LSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPSNE 1642
            LS L VED+ FWRMQE MV +L+ +L D D+AFDVLT SC + GN AA+ML+AGF+P  E
Sbjct: 673  LSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIMLSAGFKPQTE 732

Query: 1641 PHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLEDCF 1462
            PHLRGML+ I+ +QL  LREK+RIFVHSGRWLMG LDELGVLE GQCF+QVSTP LE CF
Sbjct: 733  PHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVSTPLLESCF 792

Query: 1461 AKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKGER 1282
            AKHGS F++ ++NL+VI G VVIAKNPCLHPGD+RILEAVD PGL HL+DCL+FPQKG+R
Sbjct: 793  AKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGDR 852

Query: 1281 PHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFFIK 1102
            PH +EASGSDLDGDLYFVTWD+NLIPPSKKSW PM Y+P E K + R VT  DII+FF+K
Sbjct: 853  PHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGRPVTQQDIIDFFVK 912

Query: 1101 NMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKPKL 922
            NM NENLG ICNAHVVHAD S YGALD  C+KLAELAA+AVDFPKTGKIVS+P  LKP+L
Sbjct: 913  NMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTGKIVSLPQHLKPRL 972

Query: 921  YPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGSRD 742
            YPDF+GKE+ QSYKSTKILG+LYR++RDAY++D   S +L Y   +I YD +LE+ G+ D
Sbjct: 973  YPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDMDLEVPGAAD 1032

Query: 741  FIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAYSA 562
            F+ DAW  KCSYDGQL GL+GQYKV  E+E+VTGH+WS+PKS+SKKQGELKERL H+Y+A
Sbjct: 1033 FVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKERLSHSYNA 1092

Query: 561  LRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPGK- 385
            L+K++R++FE +  + + L+D EKN+  E+KASAWYQV+YH  WV++S  LQ+ D PG  
Sbjct: 1093 LKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPLQEPDGPGDV 1152

Query: 384  TVLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
             V+LSFAWIAADYL RIKI+   +E+  S+KPI+SL RYLAD+I
Sbjct: 1153 VVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1485 bits (3845), Expect = 0.0
 Identities = 707/1063 (66%), Positives = 858/1063 (80%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            V +EIG L   DEF V W+GP  G DF+VDPF+GTC+  F RDTAFS +G  + AVI C+
Sbjct: 135  VRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKGLNKHAVITCD 194

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK EF  REI E K Y +     +LL+L S P + YRTADDDI++SV +DLLDDDDPWIR
Sbjct: 195  FKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFDLLDDDDPWIR 254

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVP 2902
            TTDF P+GAIGR N YR+ + PR+  +L+KA+ +L+ERRV  +   +  R+QDEP FG P
Sbjct: 255  TTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPRIQDEPGFGNP 314

Query: 2901 MPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIY 2722
            M D  F   Y++ +SF ++F+VNAV+HKGI+NQHQ+S++FFDLLR Q EE N+ ALKH+ 
Sbjct: 315  MSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEEINVAALKHLC 374

Query: 2721 SYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSN 2542
            SYK P +DA + L  VQ+WL++NPKL++ P+++DDI EVRRL+ITP+KAYCLPPEVELSN
Sbjct: 375  SYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPPEVELSN 434

Query: 2541 RVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDI 2362
            RVLRKY+ ++DRFLRVTFMDE MQT+N+NV+  Y APIV+E+T+N  PQKT ++ R+R I
Sbjct: 435  RVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKVYVRIRAI 494

Query: 2361 LYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARM 2182
            L  GF+LCGRKYSFLAFSSNQLRDRSAWFFAEDK+ ++  IKNWMG+FTNRNVAKCAARM
Sbjct: 495  LMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTNRNVAKCAARM 554

Query: 2181 GQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLPCA 2002
            GQCFSSTYATVEVP +Q NH+L D+ERN YVFSDGIG I+ DLA EVAEKL++  + P A
Sbjct: 555  GQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLKLDRDPPSA 614

Query: 2001 FQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIVTL 1822
            +QIRY G KGVVACWP+  +G RL LR SM KF S+HTTLEICSWTR QPGFLNRQI+TL
Sbjct: 615  YQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNRQIITL 674

Query: 1821 LSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPSNE 1642
            LSAL V D+ FW MQE MVS+L  +L D D+AFDVLT SC + GN+AA+ML+AGF+P  E
Sbjct: 675  LSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLSAGFKPQTE 734

Query: 1641 PHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLEDCF 1462
            PHLRGML+ I+ +QL  LREK+RIFV SGRWLMGCLDELGVLE GQCF+QVSTPSLE+CF
Sbjct: 735  PHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPSLENCF 794

Query: 1461 AKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKGER 1282
            AKHGS F +T KNL+VI G VV+AKNPCLHPGD+RILEAVD PGL HLHDCL+FPQKG R
Sbjct: 795  AKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFPQKGHR 854

Query: 1281 PHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFFIK 1102
            PH +EASGSDLDGDLYFVTWD+NLIPP KKSW PM+YEP E K   R VT  D+IEFF++
Sbjct: 855  PHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQDLIEFFVR 914

Query: 1101 NMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKPKL 922
            NMVNENLG ICNAHVVH+D S+YGA DE C+KLAELAA+AVDFPKTGKIV+MPP LKPKL
Sbjct: 915  NMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTMPPHLKPKL 974

Query: 921  YPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGSRD 742
            YPDFMGK++ QSYKS KILG+LYR+I DAY++D   S +  +   ++ YD +LE+  + D
Sbjct: 975  YPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVKYDMDLEVPKAAD 1034

Query: 741  FIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAYSA 562
            FIADAW  KCSYD QL GL+ QYK+  E+E+VTGH+WSMPK +S+KQGEL+ERLKH+YSA
Sbjct: 1035 FIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQGELQERLKHSYSA 1094

Query: 561  LRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPGKT 382
            L+K++R+ FE M   F+ L D +KN  YEQKASAWYQV+YH  WV+KS +L   D PG  
Sbjct: 1095 LKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKSLDLHGPDGPGDV 1154

Query: 381  VLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
            V+LSFAWIAADYL RIKI++R++ N    KPI+ L +YLAD+I
Sbjct: 1155 VMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1476 bits (3820), Expect = 0.0
 Identities = 720/1063 (67%), Positives = 857/1063 (80%)
 Frame = -2

Query: 3441 VSIEIGVLRSRDEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCN 3262
            VS+EIG L S DEF+VGWRGP +G +FLVDPF+ TC+  F+RDTAFS +G    AVIKC+
Sbjct: 135  VSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEHAVIKCD 194

Query: 3261 FKIEFVPREINEIKRYKDFTSIFILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIR 3082
            FK+EF+ REINE+K+Y + T   +LLQLAS P ++YRTADDD E++VP+ LLDDDD WIR
Sbjct: 195  FKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLDDDDQWIR 254

Query: 3081 TTDFVPSGAIGRSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVP 2902
            TTDF  SGAIGR NTYR+ VRPR+  +L+KA+ +L+ERRVP      +LR++DEPDFG  
Sbjct: 255  TTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRDEPDFGRS 314

Query: 2901 MPDPFFCFQYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIY 2722
            M D F+ + YKEG+ F++MF+VNAV+HKGI NQHQ+S +FF LLR Q+ E N+ ALKHIY
Sbjct: 315  MSDHFY-YIYKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNVAALKHIY 373

Query: 2721 SYKRPTYDALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSN 2542
            SY+ P YDA   L +V  WL+KNPKL + P Q+DDIVE+RRL+ITP+KAYCL PEVELSN
Sbjct: 374  SYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLLPEVELSN 433

Query: 2541 RVLRKYRSISDRFLRVTFMDEAMQTLNNNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDI 2362
            RVLRKY+ ++DRFLRVTFMDE MQ +N NVLTYY A IVR+VT     QKT +F+RV+ I
Sbjct: 434  RVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGVFKRVKSI 493

Query: 2361 LYKGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARM 2182
            L  GFYLCGRKYSFLAFS+NQLRDR+AWFFAED    V  I  WMGKFTNRN+AKCAARM
Sbjct: 494  LTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNIAKCAARM 553

Query: 2181 GQCFSSTYATVEVPPSQANHKLKDVERNNYVFSDGIGMISSDLAKEVAEKLQMHTNLPCA 2002
            GQCFSSTYATVEVP  Q N  L D++RN Y FSDGIG I+ DLA EVA+KL++  N PCA
Sbjct: 554  GQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKLKLDLNPPCA 613

Query: 2001 FQIRYAGYKGVVACWPAIKNGPRLQLRTSMRKFDSNHTTLEICSWTRFQPGFLNRQIVTL 1822
            +QIRYAG KGVVACWP   +  RL LR+SM KF S+HTTLEICSWTRFQPGFLNRQI+TL
Sbjct: 614  YQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFLNRQIITL 673

Query: 1821 LSALEVEDDKFWRMQELMVSRLDCILEDPDMAFDVLTDSCTDHGNTAAMMLAAGFRPSNE 1642
            LS L V D+ FW MQ  MVS+LD +L D D AF+V+  SC + G+T A+ML+AGF+P  E
Sbjct: 674  LSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAIMLSAGFKPQTE 733

Query: 1641 PHLRGMLSSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSTPSLEDCF 1462
            PHLRGML+ +R SQL  LREKSRIF+HSGRWLMG LDELGVLE GQCFIQVS PSL++CF
Sbjct: 734  PHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNPSLQNCF 793

Query: 1461 AKHGSEFSKTKKNLEVITGLVVIAKNPCLHPGDVRILEAVDVPGLKHLHDCLIFPQKGER 1282
             KHGS F++TKKN EVI GLVVIAKNPCLHPGD+RILEAVD PGL HL+DCL+FPQKGER
Sbjct: 794  LKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGER 853

Query: 1281 PHPNEASGSDLDGDLYFVTWDDNLIPPSKKSWPPMDYEPGEVKEKPRGVTHSDIIEFFIK 1102
            PH NEASGSDLDGDLYFVTW++ LIPPSKKS  PM Y+    +E  R VTH DIIEFF K
Sbjct: 854  PHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHKDIIEFFSK 913

Query: 1101 NMVNENLGTICNAHVVHADTSKYGALDEKCIKLAELAAIAVDFPKTGKIVSMPPELKPKL 922
            NMVNE+LG+ICNAHVVH+D S++GA DEKCI LAELAAIAVDFPKTGKIVSMP +LKPKL
Sbjct: 914  NMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMPAQLKPKL 973

Query: 921  YPDFMGKEELQSYKSTKILGKLYRRIRDAYNQDYEPSPQLTYPSENIFYDRELEITGSRD 742
            YPDFMGKEE QSYKS KILG+LYR I+DAY++D   S +L + + +I YD +LEITGS D
Sbjct: 974  YPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYDADLEITGSAD 1033

Query: 741  FIADAWSCKCSYDGQLMGLLGQYKVNSEDEVVTGHIWSMPKSSSKKQGELKERLKHAYSA 562
            +I DAW+ KCSYDGQL+GLL QYKV  E+EVVTG IWSMPK +SKK G+LKE+L H+Y +
Sbjct: 1034 YITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKEKLGHSYGS 1093

Query: 561  LRKDYRKVFECMGPDFDQLSDHEKNVRYEQKASAWYQVSYHESWVEKSKELQKVDDPGKT 382
            LRK++R++FE M  +F+QL++ EKN  YE+KASAWYQV+YH  WV+K  E QK D     
Sbjct: 1094 LRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQKPDGDEGV 1153

Query: 381  VLLSFAWIAADYLTRIKIRQRKMENAISSKPIDSLGRYLADKI 253
            V+LSFAWIAADYL RIK+R +  EN   +KP++SL RYLAD+I
Sbjct: 1154 VMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196