BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha27_contig00000742
         (1353 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]   505   e-159
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   477   e-149
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]   457   e-143
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   400   e-122
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       396   e-122
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise...   381   e-119
gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]       384   e-118
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   382   e-117
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu...   379   e-116
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   379   e-116
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   378   e-116
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   379   e-116
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   376   e-116
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   380   e-115
gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana...   376   e-115
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   367   e-115
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       368   e-114
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   373   e-114
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   366   e-114
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   369   e-113

>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
          Length = 1118

 Score =  505 bits (1300), Expect(2) = e-159
 Identities = 239/314 (76%), Positives = 269/314 (85%)
 Frame = -1

Query: 1125 LMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSVLWKAADVTVKFGNK 946
            L   T YLK W+Q  DIVPNPRTY++ +EGVTLN+G Q S++ FSVLWKA+DV++KFG  
Sbjct: 8    LRCNTYYLKFWEQKTDIVPNPRTYDNVVEGVTLNLGCQISEDEFSVLWKASDVSIKFGTG 67

Query: 945  LKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQLYGAPRIYKKLDDCA 766
            LKNM LFL HESVEYRLQLY+DNIWQIVLYNSG  G+A +VLLIQLYGAPRI+KKL D  
Sbjct: 68   LKNMHLFLCHESVEYRLQLYYDNIWQIVLYNSG--GQAAQVLLIQLYGAPRIHKKLPDSV 125

Query: 765  HSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADNFVNYEESKSPFSLE 586
            +SYF+ TPDDQWVRTTDFTPSS IGQSSG+CL  P G  LP F  +FV Y+ESK PF LE
Sbjct: 126  YSYFQQTPDDQWVRTTDFTPSSCIGQSSGMCLQFPSGIKLPEFERHFVYYKESKKPFFLE 185

Query: 585  NGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLDKNFYKLINPEKFDI 406
            NGVPFC N DLVPI+QP RGLELPYRLLFKVCCLVQ GCLPGPKLD NFY+L+NP+ FDI
Sbjct: 186  NGVPFCENLDLVPIMQP-RGLELPYRLLFKVCCLVQTGCLPGPKLDDNFYRLLNPKSFDI 244

Query: 405  AYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPADDDLVHIHRMQVTPTKVY 226
             YLEQ+LEK+YY+KECCYDPHSWLIEQHQNY TFKKP+PP  +DDLVHIHR+QVTPTKVY
Sbjct: 245  TYLEQLLEKLYYLKECCYDPHSWLIEQHQNYCTFKKPKPPAVNDDLVHIHRVQVTPTKVY 304

Query: 225  FYGPEVNVSNRVLR 184
            F+GPE NVSNRVLR
Sbjct: 305  FHGPEANVSNRVLR 318



 Score = 85.9 bits (211), Expect(2) = e-159
 Identities = 42/46 (91%), Positives = 43/46 (93%)
 Frame = -3

Query: 145 ESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAP 8
           E+ RTKLYER LSTLRNGI IGSKKFEFLAFSSSQLRENSLWMFAP
Sbjct: 354 ENTRTKLYERVLSTLRNGITIGSKKFEFLAFSSSQLRENSLWMFAP 399


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  477 bits (1227), Expect(2) = e-149
 Identities = 240/391 (61%), Positives = 291/391 (74%), Gaps = 3/391 (0%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MG+TIQV GFP+L++AE VK FLE        G GT+ A++VK+ K G RAYARVQFT++
Sbjct: 1    MGRTIQVFGFPYLVAAELVKKFLENYT-----GEGTVIALEVKTAKVGRRAYARVQFTNI 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A     LA    L YGTSYLK ++ D+DIV NPRT+  EME VTLN G Q S   FSV
Sbjct: 56   RCAETIIDLAK-NRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSV 114

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            LWK   VTVKFG  +K M  FL H SVEY++QL ++NIWQIVLYNS   G++ K+L+IQL
Sbjct: 115  LWKGESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNS--YGQSSKLLVIQL 172

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYKKL    +SYF +T DDQWVRTTDFT  S IGQSS +CL LP G  LPNF DN
Sbjct: 173  FGAPRIYKKLSGSVYSYFMVTQDDQWVRTTDFT-QSLIGQSSSLCLQLPYGMRLPNFRDN 231

Query: 627  FVNYEESKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLD 448
            F+ Y+ES++PF LE GVPF  N DLVPI++PP  ++LPY LLFKVC LVQ GCLPGPKLD
Sbjct: 232  FLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPGPKLD 291

Query: 447  KNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA---D 277
            ++F+ L+NP K DI Y+E  LEK+YY+KECCY+P +WL EQ++ YRT K+    PA   D
Sbjct: 292  RSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPAICLD 351

Query: 276  DDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
            D LV++HR+QVTPT+VYF GPEVNVSNRVLR
Sbjct: 352  DGLVYVHRVQVTPTRVYFSGPEVNVSNRVLR 382



 Score = 80.9 bits (198), Expect(2) = e-149
 Identities = 36/47 (76%), Positives = 44/47 (93%)
 Frame = -3

Query: 145 ESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPT 5
           E++RTKLYER +S LR+G+RIG +KF+FLAFSSSQLR+NSLWMFAPT
Sbjct: 418 ENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPT 464


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score =  457 bits (1176), Expect(2) = e-143
 Identities = 232/395 (58%), Positives = 295/395 (74%), Gaps = 6/395 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            M KT+ VSGFP L++AE V+ FLE          G I A++VK GK+G RAYA+VQFT  
Sbjct: 1    MRKTLHVSGFPKLIAAEEVRKFLEGHT-----CEGAIEALEVKPGKRGSRAYAKVQFTSK 55

Query: 1167 EYAAMFKSLANLGILMY---GTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKEN 997
            E A     LAN+G+  Y     SYLK ++QD + V N R++  E++G+TLN G Q SK+ 
Sbjct: 56   EDADKIIHLANIGLYYYLGNSRSYLKAFEQDTNFV-NHRSFMHELDGLTLNFGCQVSKDR 114

Query: 996  FSVLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLL 817
            FSVLW+AADV+VKFG+ L  M LF+  + VEYRLQL ++NIWQIVLYNS  +    ++LL
Sbjct: 115  FSVLWRAADVSVKFGSSLNKMHLFVCDDLVEYRLQLSYENIWQIVLYNSSVQTE--RLLL 172

Query: 816  IQLYGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNF 637
            IQL+GAPRIYKKL+   +S+++ TPDDQWVRTTDFTPS  IGQSSG+CL LP    LP+F
Sbjct: 173  IQLFGAPRIYKKLEYSVYSFYRETPDDQWVRTTDFTPSC-IGQSSGLCLQLPRHVKLPDF 231

Query: 636  ADNFVNYEESKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGP 457
             +NF++Y  S+ PF L NG PFCGN  LVPI+QPPRGLELPY+LLFKVC LVQ GCLPG 
Sbjct: 232  KNNFMHYTVSEEPFQLVNGAPFCGNLPLVPIVQPPRGLELPYKLLFKVCSLVQTGCLPGM 291

Query: 456  KLDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK-PRPP-- 286
            KLD  F++ +NP ++ I Y+E  L+K+YY+KECCYDP +WL EQ++ Y+TF++ P+PP  
Sbjct: 292  KLDTEFFQCLNPRRYAIRYIEHALDKLYYIKECCYDPVAWLREQYRKYQTFEELPKPPTI 351

Query: 285  PADDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQ 181
              DD LV+IHR+QVTPT+VYF GPEVN+SNRVLRQ
Sbjct: 352  SLDDGLVYIHRVQVTPTRVYFAGPEVNMSNRVLRQ 386



 Score = 80.1 bits (196), Expect(2) = e-143
 Identities = 38/43 (88%), Positives = 40/43 (93%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAP 8
           RTKLYER LSTLRNGI IG K+F+FLAFSSSQLRENSLWMFAP
Sbjct: 424 RTKLYERVLSTLRNGITIGEKRFQFLAFSSSQLRENSLWMFAP 466


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  400 bits (1027), Expect(2) = e-122
 Identities = 208/399 (52%), Positives = 267/399 (66%), Gaps = 11/399 (2%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQVS FP  + AE VK FLE     L  G  T++A++++  K G RAYA VQFT  
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLE-----LYTGKETVYALKIRQQKNGGRAYAIVQFTKS 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A +   L N   L YG+SYLK  + + DIVP PRT+   MEGVTL+ G Q S E F V
Sbjct: 56   TDAELIIRLTNQR-LYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYV 114

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            LW+  DVTV FG  ++ +Q  LSH  VEYRL L+++NIWQI L+    R +  K LLIQL
Sbjct: 115  LWEEVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRP--RNQTSKYLLIQL 172

Query: 807  YGAPRIYKK--------LDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGT 652
            +GAPRIY+K         ++   +YF   PDDQWVRTTDFT SS IGQSS +CL LP   
Sbjct: 173  FGAPRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYL 232

Query: 651  TLPNFADNFVNYEESKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNG 472
             LPNF +NF  Y+ES+  F LE+G  +  N +LVPI+ P  G++LPY +LFK+  LVQNG
Sbjct: 233  QLPNFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNG 292

Query: 471  CLPGPKLDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPR 292
            C+PGP LD NFY+L+NP + D  Y++  LEK+YY+KECC++P  WL+EQ++ Y   KK  
Sbjct: 293  CIPGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNP 352

Query: 291  PPPA---DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
              P    DD LV++ R+Q+TP++VYF GPE+NVSNRVLR
Sbjct: 353  GSPVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLR 391



 Score = 68.2 bits (165), Expect(2) = e-122
 Identities = 33/44 (75%), Positives = 38/44 (86%)
 Frame = -3

Query: 142 SRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           +R T++Y R LSTL+NGI IG K+FEFLAFSSSQLRENS WMFA
Sbjct: 422 NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFA 465


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  396 bits (1018), Expect(2) = e-122
 Identities = 210/393 (53%), Positives = 272/393 (69%), Gaps = 5/393 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP+LLSAE VK FLE        G GT++A++VK  K G RA+A+VQF + 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHT-----GNGTVYALEVKQSKGGRRAFAKVQFANN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
            + A     LA+ G L YG SYLK W+   DIV  PRTY + M+GVTLN G Q S + F+V
Sbjct: 56   KSAEFIIDLASKG-LYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + DV++KFG  LK +  FLSH S +Y+LQL ++NIWQ+VL+     G+  + LL+QL
Sbjct: 114  LG-SKDVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRP--YGQNAQFLLLQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYK+L+D  +S+FK TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF+++
Sbjct: 171  FGAPRIYKRLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLPNFSES 229

Query: 627  FVNYEESKSPFSLENGVPFCGNQDL--VPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 454
            F  Y+ES + F L+ G  F  +Q L  VPI+  P G+ELPY++LFK+  L+Q+GC PG  
Sbjct: 230  FFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLA 289

Query: 453  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNY---RTFKKPRPPP 283
            L+ NF++L++P + +IA +E  LEK+YY+KECCYDP  WL EQ+  Y   R   K  P  
Sbjct: 290  LNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPIT 349

Query: 282  ADDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 350  LDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLR 382



 Score = 70.5 bits (171), Expect(2) = e-122
 Identities = 33/42 (78%), Positives = 37/42 (88%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +YER LSTLRNG  IG K+FEFLAFSSSQLR+NS+WMFA
Sbjct: 420 RTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFA 461


>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
          Length = 1095

 Score =  381 bits (979), Expect(2) = e-119
 Identities = 193/390 (49%), Positives = 257/390 (65%), Gaps = 1/390 (0%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MG T+ + GFP  + A++VK  +E+       G GT+ A++V++ K G RAYA VQF D 
Sbjct: 1    MGLTVMIFGFPSRVPADSVKQLVERYT-----GQGTVVALKVEASKSGPRAYAVVQFLDA 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A M     N   L YG+SYLKV   D ++V NP T    ++ VTL+ G Q S   FSV
Sbjct: 56   RSAEMIVHAQNS--LYYGSSYLKVRYSDKELVRNPATNLQLIDQVTLHFGCQISGNKFSV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            LW  +DVTVKFG +LK +   L      Y LQL + +IW+ VLYN  S  R    LLIQL
Sbjct: 114  LWSCSDVTVKFGTQLKTISFILFDGLYNYMLQLSYKSIWKTVLYNPSSGRRK---LLIQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRI KK++   +SY+ +  +DQWVRTTDFT ++ IGQSSG+CL  P G+ LP F D+
Sbjct: 171  FGAPRISKKVEGSPYSYYNVYTEDQWVRTTDFTRAALIGQSSGLCLEFPHGSRLPRFRDD 230

Query: 627  FVNYEESKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKLD 448
            FV ++E +  F L+ G  F  N  L PI+ PPRGL LPY ++FK+C LVQ GC+PGP+LD
Sbjct: 231  FVYFKEKEEEFHLQEGYSFSQNSVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELD 290

Query: 447  KNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPP-PADDD 271
             NFY+++NP+  DI Y+E  LEKI+Y+KECCYDP  WL  Q++ Y+T K   P    +  
Sbjct: 291  ANFYRMVNPQLVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQTSKPSSPTISLEGG 350

Query: 270  LVHIHRMQVTPTKVYFYGPEVNVSNRVLRQ 181
            LV++ R+Q+TP++VYF GPE+NVSNRVLRQ
Sbjct: 351  LVYVRRVQITPSRVYFTGPEINVSNRVLRQ 380



 Score = 75.5 bits (184), Expect(2) = e-119
 Identities = 35/47 (74%), Positives = 41/47 (87%)
 Frame = -3

Query: 145 ESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPT 5
           E  +T++YER LS LR GIRIG K+F+FLAFSSSQLRENSLWMFAP+
Sbjct: 411 EIGKTRIYERILSVLREGIRIGDKRFDFLAFSSSQLRENSLWMFAPS 457


>gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
          Length = 479

 Score =  384 bits (987), Expect(2) = e-118
 Identities = 205/393 (52%), Positives = 269/393 (68%), Gaps = 5/393 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP+LLSAE VK FLE        G GT++A++VK  K G R++ARVQF   
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHT-----GNGTVYALEVKQSKGGRRSFARVQFASN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
            + A +   LA++G L YG SYLK W+ + DIV  PRTY   M+GVTLN G Q S + F+V
Sbjct: 56   KSAELIIDLASMG-LYYGPSYLKAWEMNTDIV-QPRTYVQHMDGVTLNFGCQISDKKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + DV++KFG  LK +  FLS+ S +Y+LQL ++NIWQ+VL+     G+  + LL+QL
Sbjct: 114  LG-SKDVSIKFGIGLKKIYFFLSYGSSDYKLQLSYENIWQVVLHRP--YGQKAQFLLLQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYK+L++  +S+FK TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLEESCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGIRLPNFRES 229

Query: 627  FVNYEESKSPFSLENGVPFCGNQDL--VPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 454
            F  Y+ES +   L  G  F  +Q L  VPI+  P G++LPY++LFK+  L+Q+GC PG  
Sbjct: 230  FFYYKESGNQVILRTGFTFSFSQKLALVPIVHLPNGVDLPYKILFKISSLIQHGCFPGVA 289

Query: 453  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNY---RTFKKPRPPP 283
            L+ NF++L++P + +IA +E  LEK+YY+KECCYDP  WL EQ+  Y   R   K     
Sbjct: 290  LNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSIT 349

Query: 282  ADDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 350  LDDGLVYVRRVVVTPCKVYFSGPEVNVSNRVLR 382



 Score = 68.6 bits (166), Expect(2) = e-118
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +Y R LSTLRNG  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 420 RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFA 461


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  382 bits (981), Expect(2) = e-117
 Identities = 203/393 (51%), Positives = 274/393 (69%), Gaps = 5/393 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP+LLSAE VK+FLE+       G GTI A++VK  K G RA+A+VQF D 
Sbjct: 1    MGKTIQVFGFPNLLSAEVVKLFLEKHT-----GYGTICALEVKQSKGGSRAFAKVQFVDN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A    +LA+   L +G+SYLK W+   DIV   R Y D M+G+TLN G Q S++ F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + +V++KFG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYK+L++  +S+FK TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 627  FVNYEESKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 454
            F +Y E ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 453  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 280
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIT 349

Query: 279  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382



 Score = 69.7 bits (169), Expect(2) = e-117
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 420 RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFA 461


>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 935

 Score =  379 bits (972), Expect(2) = e-116
 Identities = 204/395 (51%), Positives = 273/395 (69%), Gaps = 7/395 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP LLSAE VK FLE+       G GT+ A++VK  K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPRLLSAEVVKSFLEKHT-----GYGTVCALEVKQSKGGSRAFAKVQFVDN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A    +LA+   L +G+SYLK W+ + DIV     Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + +V++KFG  LKN   FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKNFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYK+L++  +S+FK TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 627  FVNYEESKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 454
            F +Y E ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 453  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 280
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y  FK  +PP +  
Sbjct: 290  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGY--FKGRQPPKSPS 347

Query: 279  ---DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
               DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 348  ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382



 Score = 69.7 bits (169), Expect(2) = e-116
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 420 RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFA 461


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  379 bits (974), Expect(2) = e-116
 Identities = 205/394 (52%), Positives = 266/394 (67%), Gaps = 6/394 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP+LLSAE VK FLE        G GT++A++VK  K G RA+A+VQF + 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHT-----GNGTVYALEVKQSKGGRRAFAKVQFANN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
            + A +   LA+ G L YG SYLK W+    IV  PRTY   M+GVTLN G Q S + F+V
Sbjct: 56   KSAEIIIDLASKG-LYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L     V++KFG  LK +  FLS+ S +Y+LQL ++NIWQ+VL+     G+  + LL+QL
Sbjct: 114  LGSKV-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRP--YGQKAQFLLLQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
             GAPRIYK+L+D  +S+FK TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF+++
Sbjct: 171  SGAPRIYKRLEDSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSES 229

Query: 627  FVNYEESKSPFSLENGVPFCGNQD---LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGP 457
            F  Y+ES +   L+ G  F  +Q    LVPI+  P G+ELPY++LFK+  L+Q+GC PG 
Sbjct: 230  FFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGL 289

Query: 456  KLDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNY---RTFKKPRPP 286
             L+ NF++L++P + +IA +E  LEK+YY+KECCYDP  WL EQ+  Y   R   K    
Sbjct: 290  ALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSI 349

Query: 285  PADDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
              DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 350  TLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 383



 Score = 68.6 bits (166), Expect(2) = e-116
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +Y R LSTLRNG  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 421 RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFA 462


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  378 bits (971), Expect(2) = e-116
 Identities = 201/393 (51%), Positives = 271/393 (68%), Gaps = 5/393 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP+LLSAE VK FLE+       G GT+ A++VK  K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPYLLSAEVVKSFLEKHT-----GYGTVCALEVKQSKGGSRAFAKVQFVDN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A    +LA+   L +G+SYLK W+   DIV   R Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + +V++KFG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYK+L++  +S+FK TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 627  FVNYEESKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 454
            F +Y E ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 453  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 280
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIT 349

Query: 279  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382



 Score = 69.7 bits (169), Expect(2) = e-116
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 420 RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFA 461


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  379 bits (973), Expect(2) = e-116
 Identities = 199/393 (50%), Positives = 264/393 (67%), Gaps = 5/393 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVR-AYARVQFTD 1171
            M KTIQV GFP ++SA+ +K FLE+       G GTI A+++K  + G    +A+VQFT 
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYT-----GEGTIEALEIKQPRSGASMTHAKVQFTS 55

Query: 1170 VEYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFS 991
             E A    +L    +  YG +YLK  + D+DI+P PR +   M+ +TL+ G Q S E F 
Sbjct: 56   FELAEFIITLCKKKV-WYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFC 114

Query: 990  VLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQ 811
            VLWKA +V+VKFG+ L+    FLSH S EY+L+L ++NIWQI L +   RG+  K LLIQ
Sbjct: 115  VLWKAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHP--RGQITKFLLIQ 172

Query: 810  LYGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFAD 631
            L GAP+IY+K       YFK  PDDQWVR  DFTPS  IGQS  +CL LP G+ LPNF +
Sbjct: 173  LLGAPQIYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRE 232

Query: 630  NFVNYEESKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKL 451
            NF  Y+E+   F LE+G  +  N  LVPI+ PP+G  LP+++LFK+  LVQNGCL GP L
Sbjct: 233  NFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTL 292

Query: 450  DKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKP-RPPPA-- 280
            D +F++L++PE+F I+++E  LEK+Y++KECCY+P  WL EQ++ Y   KKP    PA  
Sbjct: 293  DTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY--VKKPVAGSPAIS 350

Query: 279  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
             D  LV++ R+Q+TP KVYF GPEVNVSNRVLR
Sbjct: 351  LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLR 383



 Score = 68.6 bits (166), Expect(2) = e-116
 Identities = 33/45 (73%), Positives = 37/45 (82%)
 Frame = -3

Query: 145 ESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           E RRT +Y R LS L+NGI IG KKF+FLAFSSSQLR+NS WMFA
Sbjct: 417 EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFA 461


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  376 bits (966), Expect(2) = e-116
 Identities = 200/393 (50%), Positives = 270/393 (68%), Gaps = 5/393 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP+LLSAE VK FLE+       G GT+ A++VK  K G RA+A+VQF D 
Sbjct: 1    MGKTIQVFGFPYLLSAEVVKSFLEKYT-----GYGTVCALEVKQSKGGSRAFAKVQFADN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A    +LAN   L +G+SYLK W+   DIV   R Y D+M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIITLAN-NRLYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + +V+++FG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYK+L++  +S+FK TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFPPSW-IGLSSSLCLQFRRGVRLPNFEES 229

Query: 627  FVNYEESKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 454
            F +Y E ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPA 289

Query: 453  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 280
            L+  F++L++P + ++A +E  LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSIT 349

Query: 279  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382



 Score = 69.7 bits (169), Expect(2) = e-116
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 420 RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFA 461


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  380 bits (976), Expect(2) = e-115
 Identities = 202/393 (51%), Positives = 271/393 (68%), Gaps = 5/393 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP LLSAE VK FLE+       G GT+ A++VK  K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHT-----GYGTVCALEVKQSKGGSRAFAKVQFVDN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A    +LA+   L +G+SYLK W+   DIV   R Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + +V++KFG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYK+L++  +S+FK TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 627  FVNYEESKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 454
            F +Y E ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 453  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 280
            L+ NF++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVNFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIN 349

Query: 279  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382



 Score = 65.5 bits (158), Expect(2) = e-115
 Identities = 31/42 (73%), Positives = 35/42 (83%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +Y R LSTL+ G  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 420 RTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFA 461


>gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
          Length = 1044

 Score =  376 bits (965), Expect(2) = e-115
 Identities = 204/392 (52%), Positives = 269/392 (68%), Gaps = 4/392 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP+LLSAE VK FLE        G GT++A++VK  K G RA+A+VQF + 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHT-----GNGTVYALEVKQSKGGRRAFAKVQFANN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
            + A +   LA+ G L YG SYL+ W+   DIV  PRTY   M+GVTLN G Q S + F+V
Sbjct: 56   KSAELIMDLASEG-LYYGPSYLQAWEMKTDIV-QPRTYVQHMDGVTLNFGCQISDKKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + DV++KFG  LK +  FLS+ S +Y+LQL ++NIWQ+VL+     G+  + LL+QL
Sbjct: 114  LG-SKDVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHCP--YGQKAQFLLLQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRI+K+L+D  +S+FK TPDDQWVRTTDFTPS  IG SS +CL    G  LPNF+ +
Sbjct: 171  FGAPRIHKRLEDSCNSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSGS 229

Query: 627  FVNYEES-KSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPKL 451
            F  Y+ES  S F+      F     LVPI+  P G+ELPY++LFK+  L+Q+GC PG  L
Sbjct: 230  FFYYKESGPSYFTDWFTFSFVQKLSLVPIVHLPEGVELPYKILFKISSLIQHGCFPGLAL 289

Query: 450  DKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK-PRPP--PA 280
            + NF++L++P + +IA +E  LEK+YY+KECCYDP  WL EQ+  Y   ++ P+ P    
Sbjct: 290  NFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKHRQLPKSPSITL 349

Query: 279  DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
            DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 350  DDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 381



 Score = 68.6 bits (166), Expect(2) = e-115
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +Y R LSTLRNG  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 419 RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFA 460


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  367 bits (943), Expect(2) = e-115
 Identities = 193/402 (48%), Positives = 258/402 (64%), Gaps = 14/402 (3%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGV-RAYARVQFTD 1171
            MGKTI++ GFP  ++  +VK F+EQ       G GT+FA++++ GK  V RA+A +QFT 
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYT-----GEGTVFAIKLRHGKGRVPRAFAIIQFTT 55

Query: 1170 VEYAAMFKSLAN--LGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKEN 997
               A    S AN  L  L YGTSYLK  + + DIVP PR +   ++ V L+ G Q SK  
Sbjct: 56   ANSATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGR 115

Query: 996  FSVLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLL 817
            FSVLWK  DV V FG+ ++ M    SH +V+Y+L+L ++NIW+I L+    R    + LL
Sbjct: 116  FSVLWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRP--RNETTRYLL 173

Query: 816  IQLYGAPRIYKK--------LDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLP 661
            IQL GAPR+++          DD   ++FK  PD+QW+R  DFTP S IGQSS ICL LP
Sbjct: 174  IQLLGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELP 233

Query: 660  PGTTLPNFADNFVNYEESKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLV 481
             G  LPNF +NF  YEES+  ++L+ GVPF  N  LVPI+ PP G+++ Y +LFKV  LV
Sbjct: 234  NGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLV 293

Query: 480  QNGCLPGPKLDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFK 301
            Q+ CL GP LD +FY+L++P +    ++E  LEKIYY KE CY+P  WL +Q++ Y   K
Sbjct: 294  QHACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESK 353

Query: 300  K-PRPP--PADDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
              PR P    D  LV++ R+Q+TP KVYF GPE+NVSNRVLR
Sbjct: 354  NHPRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLR 395



 Score = 75.5 bits (184), Expect(2) = e-115
 Identities = 34/47 (72%), Positives = 42/47 (89%)
 Frame = -3

Query: 145 ESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFAPT 5
           ++++T++Y R LS L+NGI +G KKFEFLAFSSSQLRENSLWMFAPT
Sbjct: 427 QNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPT 473


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  368 bits (945), Expect(2) = e-114
 Identities = 198/402 (49%), Positives = 266/402 (66%), Gaps = 13/402 (3%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQG-VRAYARVQFTD 1171
            MGKTIQ+SGFP  +SAE+VK FLE        G GT++A++++  K G  R+YA VQF  
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHT-----GRGTVYAIKIRPTKNGGSRSYAIVQFMT 55

Query: 1170 VEYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFS 991
            VE A +   LAN   L YG SYL     + DIVP PR     ++ VTL+ G Q SKE FS
Sbjct: 56   VETAELIIRLANPR-LWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFS 114

Query: 990  VLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQ 811
             LW+  +V+V FG  L+ +  +L++  VEYRLQL ++N+WQI L+    RG+  K LLIQ
Sbjct: 115  FLWRVGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRP--RGQTAKYLLIQ 172

Query: 810  LYGAPRIYKK--------LDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPG 655
            L GAPR+Y+K        L++   +YFK TPDDQWVR TDFT S  IG SS + L LP G
Sbjct: 173  LLGAPRVYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYG 232

Query: 654  TTLPNFADNFVNYEESKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQN 475
              LP+  +NFV Y+ES+  F LE+G  F  N DLVPI+ PP G+ LP+  +FK+  L+QN
Sbjct: 233  VDLPDLRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQN 292

Query: 474  GCLPGPKLDKNFYKLINPEKF-DIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKK 298
            GCL GP LD +FY+L++P++  ++  +   LEK++ +KEC Y+P +WL EQ++ Y T  +
Sbjct: 293  GCLSGPTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPR 352

Query: 297  PRPPPA---DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQ 181
            P  PPA   D  LV++ R+QVTP+KVYF GPE+NVSNRVLR+
Sbjct: 353  PPKPPAIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLRE 394



 Score = 73.9 bits (180), Expect(2) = e-114
 Identities = 35/45 (77%), Positives = 38/45 (84%)
 Frame = -3

Query: 145 ESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           E RRT +Y R LS LRNGI IG +KFEFLAFSSSQLR+NSLWMFA
Sbjct: 429 EDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFA 473


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  373 bits (958), Expect(2) = e-114
 Identities = 199/393 (50%), Positives = 268/393 (68%), Gaps = 5/393 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP LL AE VK FLE+       G GT+ A+ VK  K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPDLLPAEVVKSFLEKHT-----GYGTVCALDVKQSKGGSRAFAKVQFVDN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A    +LA+   L +G+SYLK W+   DIV     Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAV 112

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + +V++KFG  LK +  FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 113  LG-STEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 169

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYK+L++  +S+FK TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 170  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQES 228

Query: 627  FVNYEESKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 454
            F +Y E ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 229  FFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPS 288

Query: 453  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 280
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 289  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIT 348

Query: 279  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 349  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 381



 Score = 67.4 bits (163), Expect(2) = e-114
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +YER LST++ G  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 419 RTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFA 460


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  366 bits (940), Expect(2) = e-114
 Identities = 194/401 (48%), Positives = 255/401 (63%), Gaps = 12/401 (2%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQG-VRAYARVQFTD 1171
            M KT++VSGFP   +A  V++FLE        G GT+ A++++  + G  R YA VQFT 
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHT-----GGGTVEALKIREIRTGGARKYAIVQFTT 55

Query: 1170 VEYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFS 991
               A    SLAN   L YG SYL     D DI+P PR++   ME VTL+ G QTSKE FS
Sbjct: 56   TRAAEQIISLANPR-LWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFS 114

Query: 990  VLWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQ 811
             +W   +V+V FG  ++ +  FLSH   EY+L L  +NIWQI L+    RG+  K LLIQ
Sbjct: 115  AVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRP--RGQTVKYLLIQ 172

Query: 810  LYGAPRIYKK--------LDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPG 655
            LYGAPRIY++         +D   +YF+  PD+QWVRTTDFTPS  IG SS +CL LP  
Sbjct: 173  LYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNH 232

Query: 654  TTLPNFADNFVNYEESKSPFSLENGVPFCGNQDLVPIIQPPRGLELPYRLLFKVCCLVQN 475
              LPNF +NF  Y+E++  F LE+G+ F  N DLVPI+ P  G+ LPY +LF+V  LVQN
Sbjct: 233  LQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQN 292

Query: 474  GCLPGPKLDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKP 295
            GCL G  LD  FY+L++P +  +  +E  LEK+Y++KECCY+P  W  EQ++ Y T   P
Sbjct: 293  GCLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNP 352

Query: 294  RPPPA---DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLRQ 181
               P    D  LV+++++Q+TP KV+F GPEVNVSNRVLRQ
Sbjct: 353  PRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQ 393



 Score = 73.2 bits (178), Expect(2) = e-114
 Identities = 36/45 (80%), Positives = 38/45 (84%)
 Frame = -3

Query: 145 ESRRTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           E RRT +Y R LSTL+NGI IG KKFEFLAFSSSQLRENS WMFA
Sbjct: 428 ELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFA 472


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  369 bits (946), Expect(2) = e-113
 Identities = 198/393 (50%), Positives = 269/393 (68%), Gaps = 5/393 (1%)
 Frame = -1

Query: 1347 MGKTIQVSGFPHLLSAENVKMFLEQRMELLGRGTGTIFAVQVKSGKQGVRAYARVQFTDV 1168
            MGKTIQV GFP LLSAE VK FLE+       G GT+ A++VK  K G RA+A+VQF D 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHT-----GYGTVCALEVKQSKGGSRAFAKVQFVDN 55

Query: 1167 EYAAMFKSLANLGILMYGTSYLKVWDQDMDIVPNPRTYEDEMEGVTLNVGVQTSKENFSV 988
              A    +LA+   L +G+SYLK  + + D+V     Y D M+G+TLN G Q S + F+V
Sbjct: 56   ISADKIINLASKR-LYFGSSYLKAREMETDLV-QLWEYVDHMDGITLNFGCQISDDKFAV 113

Query: 987  LWKAADVTVKFGNKLKNMQLFLSHESVEYRLQLYHDNIWQIVLYNSGSRGRAGKVLLIQL 808
            L  + +V++KFG  LK    FLS  S +Y+LQL ++NIWQ+VL+     G+  + LLIQL
Sbjct: 114  LG-STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRP--YGQNAQFLLIQL 170

Query: 807  YGAPRIYKKLDDCAHSYFKITPDDQWVRTTDFTPSSSIGQSSGICLHLPPGTTLPNFADN 628
            +GAPRIYK+L++  +S+FK TPDDQWVRTTDF PS  IG SS +CL    G  LPNF ++
Sbjct: 171  FGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQES 229

Query: 627  FVNYEESKSPFSLENGVPFCGNQD--LVPIIQPPRGLELPYRLLFKVCCLVQNGCLPGPK 454
            F +Y E ++  +L+ G  F  +Q   LVP +QPP G+ +PY++LFK+  LVQ+GC+PGP 
Sbjct: 230  FFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 289

Query: 453  LDKNFYKLINPEKFDIAYLEQVLEKIYYMKECCYDPHSWLIEQHQNYRTFKKPRPPPA-- 280
            L+  F++L++P++ ++A +EQ LEK+YY+KECCYDP  WL EQ+  Y   ++P   P+  
Sbjct: 290  LNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSIN 349

Query: 279  -DDDLVHIHRMQVTPTKVYFYGPEVNVSNRVLR 184
             DD LV++ R+ VTP KVYF GPEVNVSNRVLR
Sbjct: 350  LDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382



 Score = 69.7 bits (169), Expect(2) = e-113
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = -3

Query: 136 RTKLYERTLSTLRNGIRIGSKKFEFLAFSSSQLRENSLWMFA 11
           RT +YER LSTLR G  IG KKFEFLAFSSSQLR+NS+WMFA
Sbjct: 420 RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFA 461