BLASTX nr result
ID: Mentha26_contig00049005
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha26_contig00049005
(582 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza] 278 1e-72
gb|EYU30717.1| hypothetical protein MIMGU_mgv1a001145mg [Mimulus... 254 1e-65
gb|EYU40508.1| hypothetical protein MIMGU_mgv1a0199441mg, partia... 254 2e-65
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 204 2e-50
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 201 9e-50
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 197 2e-48
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 194 1e-47
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 194 1e-47
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 193 3e-47
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 193 3e-47
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps... 189 5e-46
ref|XP_002883965.1| RNA-dependent RNA polymerase family protein ... 189 5e-46
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 189 6e-46
ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutr... 187 1e-45
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 186 3e-45
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 184 1e-44
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 184 1e-44
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 184 2e-44
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 183 3e-44
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 183 3e-44
>gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]
Length = 898
Score = 278 bits (710), Expect = 1e-72
Identities = 144/186 (77%), Positives = 162/186 (87%), Gaps = 2/186 (1%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
R SLILSKTT+IDLDFAAIIVEIIEDIPFQD +GSII DEDGKPILHTDGTGYIS+DLA+
Sbjct: 373 RLSLILSKTTRIDLDFAAIIVEIIEDIPFQDDNGSIIRDEDGKPILHTDGTGYISQDLAM 432
Query: 210 KCLKDLHASKHNTDTYFDELLLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRSMIKVEK 389
KC KD +AS HNT++ F E LLIQCRLFHDGYAVKGTLLVNRKLEPGRIQ+R SMIKVEK
Sbjct: 433 KCSKDFYASMHNTNSTF-EPLLIQCRLFHDGYAVKGTLLVNRKLEPGRIQIRPSMIKVEK 491
Query: 390 DQKLQNQE--TFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALEETRK 563
D ++++E FNSLEI SR+P ++ LSK LI+LL+YGGVPQEFFLNLL ALEET+
Sbjct: 492 DHSMESEEILKFNSLEINTISRRPNRNFLSKYLISLLSYGGVPQEFFLNLLFKALEETQN 551
Query: 564 VYSNRR 581
VYSNRR
Sbjct: 552 VYSNRR 557
>gb|EYU30717.1| hypothetical protein MIMGU_mgv1a001145mg [Mimulus guttatus]
Length = 878
Score = 254 bits (649), Expect = 1e-65
Identities = 127/187 (67%), Positives = 153/187 (81%)
Frame = +3
Query: 21 CTFRFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISED 200
C R SLILSK+ K++++ AA+I+E I+DIPFQD+ G +IHDEDGKPILHTDGTGYISED
Sbjct: 280 CMARLSLILSKSIKLEINLAAVIIEKIKDIPFQDEGGFVIHDEDGKPILHTDGTGYISED 339
Query: 201 LAIKCLKDLHASKHNTDTYFDELLLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRSMIK 380
LAI+C A K+ TD F E LL+QCR+FH+GYAVKGTLLVNRKLEPG IQ+R SMIK
Sbjct: 340 LAIRCQICFSAPKYGTDDRF-EPLLVQCRIFHEGYAVKGTLLVNRKLEPGTIQIRPSMIK 398
Query: 381 VEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALEETR 560
VE+D ++ +E FNSLEIVN S KP ++ LSK LIALL+YGGVPQEFFLNL+ N LE+ R
Sbjct: 399 VERDHNIKVEEAFNSLEIVNISHKPGRNCLSKYLIALLSYGGVPQEFFLNLVANTLEDAR 458
Query: 561 KVYSNRR 581
VY+NRR
Sbjct: 459 NVYTNRR 465
>gb|EYU40508.1| hypothetical protein MIMGU_mgv1a0199441mg, partial [Mimulus
guttatus]
Length = 379
Score = 254 bits (648), Expect = 2e-65
Identities = 127/184 (69%), Positives = 156/184 (84%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RF+LILSKT K+DL+FAA+ +E IEDIPFQD++GSI++DEDGKPILHTDGTGYISEDLA
Sbjct: 171 RFALILSKTIKLDLNFAAVTIERIEDIPFQDENGSIVYDEDGKPILHTDGTGYISEDLAK 230
Query: 210 KCLKDLHASKHNTDTYFDELLLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRSMIKVEK 389
KC KD +K+ T+ F+ LL+ QCRLFHDG AVKGTLL+N+KL+PG IQVR SMIKV+K
Sbjct: 231 KCPKDFTTAKYITNNNFEPLLM-QCRLFHDGVAVKGTLLINKKLKPGTIQVRPSMIKVDK 289
Query: 390 DQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALEETRKVY 569
D L N ETFNSLEIV S +P ++ LSK LI+LL+YGGVP++FFL+LL NAL+ETR V+
Sbjct: 290 DPTLPNNETFNSLEIVAISHRPGRNNLSKYLISLLSYGGVPRQFFLDLLTNALDETRHVF 349
Query: 570 SNRR 581
SN+R
Sbjct: 350 SNKR 353
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 204 bits (518), Expect = 2e-50
Identities = 105/184 (57%), Positives = 141/184 (76%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT K+D+D + + ++ I+D P +D+DG +++DED KP++ TDGTG+ISEDLA+
Sbjct: 310 RFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLAL 369
Query: 210 KCLKDLHASKHNTDTYFDELLLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRSMIKVEK 389
+C +L K+ + D LL IQCRLF++G AVKGTLL+NRKL P IQ+R SMIKVE
Sbjct: 370 RCPNNLCRGKYMNNGNSDPLL-IQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVET 428
Query: 390 DQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALEETRKVY 569
D KL + +T NS+EI TS +PR+S LSK LIALL+YGGVP E+F+NLL +ALE+ V
Sbjct: 429 DPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQ 488
Query: 570 SNRR 581
S++R
Sbjct: 489 SSKR 492
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 201 bits (512), Expect = 9e-50
Identities = 105/189 (55%), Positives = 141/189 (74%), Gaps = 5/189 (2%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT K+D+D + + ++ I+D P +D+DG +++DED KP++ TDGTG+ISEDLA+
Sbjct: 318 RFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLAL 377
Query: 210 KCLKDLHASKHNTDTYFDEL-----LLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRSM 374
+C +L K+ + D LLIQCRLF++G AVKGTLL+NRKL P IQ+R SM
Sbjct: 378 RCPNNLCRGKYMNNGNSDVCDSRYPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSM 437
Query: 375 IKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALEE 554
IKVE D KL + +T NS+EI TS +PR+S LSK LIALL+YGGVP E+F+NLL +ALE+
Sbjct: 438 IKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALED 497
Query: 555 TRKVYSNRR 581
V S++R
Sbjct: 498 APSVQSSKR 506
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 197 bits (500), Expect = 2e-48
Identities = 101/190 (53%), Positives = 134/190 (70%), Gaps = 6/190 (3%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT +++D I + I+DI D+DG + D++ KP +H+DGTGYISEDLA
Sbjct: 352 RFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLAR 411
Query: 210 KCL------KDLHASKHNTDTYFDELLLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRS 371
C K L + Y D LLIQ R+F+DGYAVKGT L+N+KL P +QVR S
Sbjct: 412 MCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPS 471
Query: 372 MIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALE 551
MIKV KD L N TFN+LE+V TS P+++KLSKNL+ALL+YGG+P EFFL++L+N LE
Sbjct: 472 MIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLE 531
Query: 552 ETRKVYSNRR 581
E++ ++ N+R
Sbjct: 532 ESKSIFYNKR 541
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 194 bits (494), Expect = 1e-47
Identities = 104/208 (50%), Positives = 146/208 (70%), Gaps = 24/208 (11%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
R SLILSKT K+++DF+ I +E IED P +DKDG++++ +DG+ ++HTDGTG+ISEDLA+
Sbjct: 367 RLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLAL 425
Query: 210 KCLKDLHASKHNTDT------------------------YFDELLLIQCRLFHDGYAVKG 317
KC ++ K D Y + LL+Q RLF++G AVKG
Sbjct: 426 KCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKG 485
Query: 318 TLLVNRKLEPGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLN 497
TLL+N+KL P IQ+R SMIKV+ D+ L + +TFNSLE+V TS +PR++ LS+NLIALL+
Sbjct: 486 TLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLS 545
Query: 498 YGGVPQEFFLNLLINALEETRKVYSNRR 581
YGGVP+ FFL++L NAL++ R V+SN+R
Sbjct: 546 YGGVPEIFFLDILRNALDDARGVFSNKR 573
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 194 bits (494), Expect = 1e-47
Identities = 104/208 (50%), Positives = 146/208 (70%), Gaps = 24/208 (11%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
R SLILSKT K+++DF+ I +E IED P +DKDG++++ +DG+ ++HTDGTG+ISEDLA+
Sbjct: 369 RLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLAL 427
Query: 210 KCLKDLHASKHNTDT------------------------YFDELLLIQCRLFHDGYAVKG 317
KC ++ K D Y + LL+Q RLF++G AVKG
Sbjct: 428 KCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKG 487
Query: 318 TLLVNRKLEPGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLN 497
TLL+N+KL P IQ+R SMIKV+ D+ L + +TFNSLE+V TS +PR++ LS+NLIALL+
Sbjct: 488 TLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLS 547
Query: 498 YGGVPQEFFLNLLINALEETRKVYSNRR 581
YGGVP+ FFL++L NAL++ R V+SN+R
Sbjct: 548 YGGVPEIFFLDILRNALDDARGVFSNKR 575
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 193 bits (490), Expect = 3e-47
Identities = 107/205 (52%), Positives = 135/205 (65%), Gaps = 23/205 (11%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSL LS T K+ +D ++ ++ IEDI DK G II+DEDGKP++HTDGTGYISEDLA
Sbjct: 453 RFSLTLSTTVKLQVDLNSVNIDRIEDICCHDKSGRIIYDEDGKPLIHTDGTGYISEDLAR 512
Query: 210 KCLKDLHASKH---NTDTYFDEL--------------------LLIQCRLFHDGYAVKGT 320
KC +D KH N + Y + + LL+QCRLF++G AVKGT
Sbjct: 513 KCPQDFFNVKHRCANLERYTNGVKLGENSSELGEAEFQSGEPPLLMQCRLFYNGLAVKGT 572
Query: 321 LLVNRKLEPGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNY 500
LLVNRKL IQ+R SMIKVE D +L + FNSLEI S KPR + LS+ LIALL Y
Sbjct: 573 LLVNRKLPRRTIQIRPSMIKVEADPRLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTY 632
Query: 501 GGVPQEFFLNLLINALEETRKVYSN 575
GGVP E+F ++L N LEET+++YS+
Sbjct: 633 GGVPVEYFYDILNNTLEETQRLYSD 657
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 193 bits (490), Expect = 3e-47
Identities = 99/189 (52%), Positives = 132/189 (69%), Gaps = 6/189 (3%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT +++D I + I+DI D+DG + D++ KP +H+DGTGYISEDLA
Sbjct: 356 RFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLAR 415
Query: 210 KCLKDLHASKHNTDTYFDEL------LLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRS 371
C ++ K E LLIQ R+F+DGYAVKGT L+N+KL P +QVR S
Sbjct: 416 MCPLNIFKGKCLRSENIQEACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPS 475
Query: 372 MIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALE 551
MIKV KD L N TFN+LE+V TS PR++KLSKNL+ALL+YGG+P EFFL++L+N LE
Sbjct: 476 MIKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLE 535
Query: 552 ETRKVYSNR 578
E++ ++ N+
Sbjct: 536 ESKSIFYNK 544
>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
gi|482565607|gb|EOA29796.1| hypothetical protein
CARUB_v10012890mg [Capsella rubella]
Length = 998
Score = 189 bits (480), Expect = 5e-46
Identities = 100/190 (52%), Positives = 130/190 (68%), Gaps = 6/190 (3%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT K+++D I E I+DI D+D + D++GKP +H+DGTGYISEDLA
Sbjct: 369 RFSLILSKTKKLEMDMTGITFEKIDDIHCHDQDNHDVLDKNGKPCIHSDGTGYISEDLAR 428
Query: 210 KCLKDLHASKHNTDTYF------DELLLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRS 371
C ++ K D LLIQ R+F+ GYAVKGT L N+KL P +QVR S
Sbjct: 429 MCPINIFKGKSIRSNNIKGTCGEDPPLLIQFRMFYKGYAVKGTFLSNKKLPPQTVQVRPS 488
Query: 372 MIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALE 551
MIKV +DQ L N TFNSLE+VNTS P+ ++LS+NLIALL+YGGVP +FFLN+L LE
Sbjct: 489 MIKVYEDQALLNFSTFNSLEVVNTSNPPKMTRLSRNLIALLSYGGVPNDFFLNILRKTLE 548
Query: 552 ETRKVYSNRR 581
E++ ++ + R
Sbjct: 549 ESKTIFYSER 558
>ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329805|gb|EFH60224.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 934
Score = 189 bits (480), Expect = 5e-46
Identities = 99/199 (49%), Positives = 133/199 (66%), Gaps = 15/199 (7%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT +++D I E I+DI D+D + D++GKP +H+DGTGYISEDLA
Sbjct: 381 RFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDNKDVLDKNGKPCIHSDGTGYISEDLAR 440
Query: 210 KCLKDLHASK----HNTDTYFDEL-----------LLIQCRLFHDGYAVKGTLLVNRKLE 344
C ++ K +N + + LLIQ R+FH+GYAVKGT L N+KL
Sbjct: 441 MCPVNIFKGKSMRSNNIQSKIPNIEGQGPCGQEPPLLIQFRMFHNGYAVKGTFLTNKKLP 500
Query: 345 PGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFF 524
P +QVR SMIKV +DQ + N TFNSLE+V TS PR ++LS+NL+ALL+YGGVP +FF
Sbjct: 501 PWTVQVRPSMIKVNEDQTMSNFSTFNSLEVVTTSNPPRNARLSRNLVALLSYGGVPNDFF 560
Query: 525 LNLLINALEETRKVYSNRR 581
LN+L N LEE++ ++ + R
Sbjct: 561 LNILRNTLEESKTIFYSER 579
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 189 bits (479), Expect = 6e-46
Identities = 99/190 (52%), Positives = 136/190 (71%), Gaps = 6/190 (3%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT K+++D I + I++I D++ +++ D++ +P +H+DGTGYISEDLA
Sbjct: 364 RFSLILSKTKKLEVDMTGITYQEIKEIHCHDQNNNVVLDKNKEPRMHSDGTGYISEDLAR 423
Query: 210 KC----LKDLHASKHNTDTYF--DELLLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRS 371
C K SK N D LLIQ R+F+DG AVKGT L+N+KL +QVR S
Sbjct: 424 MCPVNIFKGKCLSKKNIQESCGQDPPLLIQFRMFYDGNAVKGTFLLNKKLPDRTVQVRPS 483
Query: 372 MIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALE 551
MIKV KD+ L N TFNSLE+V TS P+++KLS+NL+ALL+YGGVP EFFL+LL+N +E
Sbjct: 484 MIKVSKDRALSNFSTFNSLEVVTTSNPPKRTKLSRNLVALLSYGGVPNEFFLDLLLNTME 543
Query: 552 ETRKVYSNRR 581
ET+ +++N+R
Sbjct: 544 ETKTIFNNKR 553
>ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutrema salsugineum]
gi|557110063|gb|ESQ50360.1| hypothetical protein
EUTSA_v10001896mg [Eutrema salsugineum]
Length = 988
Score = 187 bits (476), Expect = 1e-45
Identities = 99/199 (49%), Positives = 133/199 (66%), Gaps = 15/199 (7%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT K+++D I + I+DI D++ + + D+ GKP +H+DGTGYISEDLA
Sbjct: 337 RFSLILSKTKKLEVDMTGITFQQIDDIHCHDQENNNVLDKHGKPCIHSDGTGYISEDLAR 396
Query: 210 KCLKDLHASK----HNTDTYFDEL-----------LLIQCRLFHDGYAVKGTLLVNRKLE 344
C D+ K N + + LLIQ R+F+DGYAVKGT L+N+KL
Sbjct: 397 MCPTDIFKGKCIGIDNIQSKIPNVEAQGTCGKEPPLLIQFRMFYDGYAVKGTFLLNKKLP 456
Query: 345 PGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFF 524
+QVR SMIKV DQ L N TFNSLE+VNTS P ++KLS+NL+ALL+YGGVP +FF
Sbjct: 457 DRTVQVRPSMIKVYNDQTLSNFSTFNSLEVVNTSNPPNRTKLSRNLVALLSYGGVPNDFF 516
Query: 525 LNLLINALEETRKVYSNRR 581
L++L N LE ++ ++ N+R
Sbjct: 517 LDILRNTLENSKTIFQNKR 535
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 186 bits (473), Expect = 3e-45
Identities = 97/190 (51%), Positives = 135/190 (71%), Gaps = 6/190 (3%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT K+++D + EII+DIP D+DG + D++ KP +H+DGTGYISEDLA
Sbjct: 360 RFSLILSKTKKLEVDLTGVNFEIIKDIPCHDQDGKDVLDKNKKPRIHSDGTGYISEDLAQ 419
Query: 210 KCLKDLHASKHNTDTYFDEL------LLIQCRLFHDGYAVKGTLLVNRKLEPGRIQVRRS 371
C +++ K E LLIQ R+F++GYA+KGT L+N+K+ +QVR S
Sbjct: 420 MCPVNIYKGKCLRSDKIKEACGQEPPLLIQFRMFYNGYAIKGTFLLNKKIPSRTVQVRPS 479
Query: 372 MIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFFLNLLINALE 551
MIKV D L N TFN+LE+VNTS P+++KLS+NL+ALL+YGG+P EFFL++L N LE
Sbjct: 480 MIKVLPDS-LPNISTFNTLEVVNTSFPPKRTKLSRNLVALLSYGGIPDEFFLDILHNTLE 538
Query: 552 ETRKVYSNRR 581
E++ ++ N+R
Sbjct: 539 ESKAIFYNKR 548
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 184 bits (468), Expect = 1e-44
Identities = 104/203 (51%), Positives = 138/203 (67%), Gaps = 19/203 (9%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT +++D + + ++ I D P +DKDG+ ++ DGKP++HTDGTG+IS DLA+
Sbjct: 237 RFSLILSKTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLAL 296
Query: 210 KCLKD------LHASK------HNTDT-------YFDELLLIQCRLFHDGYAVKGTLLVN 332
KC K+ L AS HN + D LLIQ RLF++G AVKGT LVN
Sbjct: 297 KCPKNQVKGTCLQASNIERLRVHNEVMEQNPECLHGDPPLLIQFRLFNNGRAVKGTFLVN 356
Query: 333 RKLEPGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVP 512
+KL + VR SMIKVE D KL N + NSLEIV TS +P+++ LSKNLIALL+YGGVP
Sbjct: 357 KKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSYGGVP 416
Query: 513 QEFFLNLLINALEETRKVYSNRR 581
+EFF+ +L NALE+ + SN++
Sbjct: 417 EEFFMGILNNALEDAHGILSNKK 439
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 184 bits (468), Expect = 1e-44
Identities = 97/199 (48%), Positives = 130/199 (65%), Gaps = 15/199 (7%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT +++D I E I+DI D+D + D++GKP +H+DGTGYISEDLA
Sbjct: 356 RFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLAR 415
Query: 210 KCLKDLHASKHNTDTYFDEL---------------LLIQCRLFHDGYAVKGTLLVNRKLE 344
C ++ K LLIQ R+F++GYAVKGT L N+KL
Sbjct: 416 MCPVNIFKGKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLP 475
Query: 345 PGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVPQEFF 524
P +QVR SMIKV +D+ L N TFNSLE+V TS PR+++LS+NL+ALL+YGGVP +FF
Sbjct: 476 PRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFF 535
Query: 525 LNLLINALEETRKVYSNRR 581
LN+L N LEE++ ++ + R
Sbjct: 536 LNILRNTLEESKTIFYSER 554
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 184 bits (466), Expect = 2e-44
Identities = 99/205 (48%), Positives = 138/205 (67%), Gaps = 21/205 (10%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
R SLILSKT K+ ++ A++ +E IEDI +D++G II DEDG+P +HTDGTG+ISEDLA+
Sbjct: 372 RLSLILSKTIKLQVNLASVTIERIEDILCRDENGCIIKDEDGEPRIHTDGTGFISEDLAM 431
Query: 210 KCLKDLHASKHNTDTYFDEL---------------------LLIQCRLFHDGYAVKGTLL 326
C KD +++ D ++ LL+QCRLF +G AVKGT L
Sbjct: 432 HCPKDFVKAEYIKDENYENFVDIVDLDAERRESVSWNREPPLLMQCRLFFNGCAVKGTFL 491
Query: 327 VNRKLEPGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGG 506
VNRK+ +I +R SM+KVE D + + TF+SLEIV S +P ++ LSKNLI+LL+YGG
Sbjct: 492 VNRKIGSRKIHIRPSMVKVEIDPAISSIPTFDSLEIVAISHRPNKAYLSKNLISLLSYGG 551
Query: 507 VPQEFFLNLLINALEETRKVYSNRR 581
V +E+F+ LL +ALEET++VY +R
Sbjct: 552 VQKEYFMELLGSALEETKQVYLRKR 576
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 183 bits (465), Expect = 3e-44
Identities = 102/202 (50%), Positives = 139/202 (68%), Gaps = 19/202 (9%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT +++D + + ++ I D P +DKDG++++ DGKP++HTDGTG+IS DLA+
Sbjct: 237 RFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLAL 296
Query: 210 KCLKD------LHASK------HNT--DTY-----FDELLLIQCRLFHDGYAVKGTLLVN 332
KC K+ L AS HN + Y D LLIQ RLF++G AVKGT LVN
Sbjct: 297 KCPKNQFKGTCLRASNIERLNVHNEVMEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVN 356
Query: 333 RKLEPGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVP 512
+KL + +R SMIKVE D KL + + NSLEIV TS +P+++ LSKNLIALL+YGGVP
Sbjct: 357 KKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVP 416
Query: 513 QEFFLNLLINALEETRKVYSNR 578
+EFF+ ++ NALE+ + SN+
Sbjct: 417 EEFFMGIVNNALEDAHGILSNK 438
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 183 bits (465), Expect = 3e-44
Identities = 102/202 (50%), Positives = 139/202 (68%), Gaps = 19/202 (9%)
Frame = +3
Query: 30 RFSLILSKTTKIDLDFAAIIVEIIEDIPFQDKDGSIIHDEDGKPILHTDGTGYISEDLAI 209
RFSLILSKT +++D + + ++ I D P +DKDG++++ DGKP++HTDGTG+IS DLA+
Sbjct: 259 RFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLAL 318
Query: 210 KCLKD------LHASK------HNT--DTY-----FDELLLIQCRLFHDGYAVKGTLLVN 332
KC K+ L AS HN + Y D LLIQ RLF++G AVKGT LVN
Sbjct: 319 KCPKNQFKGTCLRASNIERLNVHNEVMEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVN 378
Query: 333 RKLEPGRIQVRRSMIKVEKDQKLQNQETFNSLEIVNTSRKPRQSKLSKNLIALLNYGGVP 512
+KL + +R SMIKVE D KL + + NSLEIV TS +P+++ LSKNLIALL+YGGVP
Sbjct: 379 KKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVP 438
Query: 513 QEFFLNLLINALEETRKVYSNR 578
+EFF+ ++ NALE+ + SN+
Sbjct: 439 EEFFMGIVNNALEDAHGILSNK 460