BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00045004
         (406 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...    57   1e-07
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...    56   3e-07
gb|AAC62795.1| contains similarity to retroviral aspartyl protea...    54   2e-06
emb|CAN75292.1| hypothetical protein VITISV_014745 [Vitis vinifera]    55   8e-06
gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsi...    50   8e-06

>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score = 56.6 bits (135), Expect(2) = 1e-07
 Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
 Frame = -2

Query: 189 SYVINSVVTIDTWHSRLGHLSFDKLHSMASFIHVTITSYK---ICGICPLAKQRKLSFPT 19
           S  +N+VV I  WH RLGH S  +L +++  +  T    K    C +C LAKQRKLSFPT
Sbjct: 546 SISVNAVVDISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPT 605

Query: 18  S 16
           S
Sbjct: 606 S 606



 Score = 24.6 bits (52), Expect(2) = 1e-07
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 260 EGKMIGMGHRLGNLYV 213
           +G+M+G G R+ NLY+
Sbjct: 524 KGRMLGQGRRVANLYL 539


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score = 56.2 bits (134), Expect(2) = 3e-07
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
 Frame = -2

Query: 180 INSVVTIDTWHSRLGHLSFDKLHSMASFIHVTITSYK---ICGICPLAKQRKLSFPTSTS 10
           +N+VV +  WH RLGH SF +L S++  +  T    K    C +C LAKQ+KLSFP++ +
Sbjct: 560 VNAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANN 619



 Score = 23.9 bits (50), Expect(2) = 3e-07
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 263 SEGKMIGMGHRLGNLYV 213
           ++G  +G G R+GNLYV
Sbjct: 534 TKGLTLGEGKRIGNLYV 550


>gb|AAC62795.1| contains similarity to retroviral aspartyl proteases (Pfam:
           rvp.hmm, score: 11.80) [Arabidopsis thaliana]
          Length = 1244

 Score = 53.5 bits (127), Expect(2) = 2e-06
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
 Frame = -2

Query: 210 DSAKLLSSYVINSVVTIDTWHSRLGHLSFDKLHSMASFIHVTITSYK---ICGICPLAKQ 40
           D+   L S  +N+VV +  WH R+GH ++ +L +++  +  T    K    C IC LAKQ
Sbjct: 528 DTTPPLDSVSVNAVVDVSLWHMRMGHPAYSRLDAISDILRTTKHKNKGSAYCHICHLAKQ 587

Query: 39  RKLSFPTSTS 10
           +KLSF +S +
Sbjct: 588 KKLSFQSSNN 597



 Score = 23.5 bits (49), Expect(2) = 2e-06
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 248 IGMGHRLGNLYV 213
           IG G R+GNLYV
Sbjct: 515 IGRGRRIGNLYV 526


>emb|CAN75292.1| hypothetical protein VITISV_014745 [Vitis vinifera]
          Length = 1472

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = -2

Query: 231 TRKSLCTDSAKLLSSYVINSVVTIDTWHSRLGHLSFDKLHSMA-SFIHVTITSYKICGIC 55
           T KSL   S+         ++ + D WHSRLGH+S  +L  +A +F++ ++ S   C IC
Sbjct: 481 TEKSLTNHSSSTNQPACNLAISSTDLWHSRLGHVSPSRLSFIAKNFLNFSVQSNNACPIC 540

Query: 54  PLAKQRKLSFPTS 16
           PLAKQ +L F TS
Sbjct: 541 PLAKQSRLPFGTS 553


>gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1264

 Score = 50.1 bits (118), Expect(2) = 8e-06
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = -2

Query: 180 INSVVTIDTWHSRLGHLSFDKLHSMASFIHVTITSYK---ICGICPLAKQRKLSFPTSTS 10
           +N+VV I TWH+RL H S  +L  ++  +  T    K    C +C LAK RKLSFP+  +
Sbjct: 408 VNAVVDISTWHNRLRHASLQRLDVISESLGTTKHKNKGSDYCHVCHLAKHRKLSFPSQNN 467



 Score = 25.0 bits (53), Expect(2) = 8e-06
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 260 EGKMIGMGHRLGNLYV 213
           +G+M+G G R+ NLYV
Sbjct: 383 KGRMLGHGRRVANLYV 398