BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00044813
         (982 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004927965.1| nucleocapsid protein [Potato yellow dwarf vi...    95   4e-17
ref|YP_052850.1| N [Maize mosaic virus] gi|81940135|sp|Q6E0X1.1|...    92   4e-16
ref|YP_224078.1| N [Taro vein chlorosis virus] gi|81929516|sp|Q5...    88   6e-15
gb|AHN10094.1| nucleocapsid protein [Eggplant mottled dwarf virus]     85   4e-14
gb|AHM10390.1| nucleocapsid protein, partial [Taro vein chlorosi...    82   4e-13
emb|CCK73133.1| nucleocapsid protein [Eggplant mottled dwarf virus]    81   7e-13
ref|YP_002308454.1| nucleocapsid protein [Maize Iranian mosaic v...    77   8e-12
ref|NP_620496.1| nucleocapsid protein [Rice yellow stunt virus] ...    73   2e-10
dbj|BAI79326.1| nucleocapsid protein [Rice yellow stunt virus]         73   2e-10
ref|YP_001294924.1| nucleocapsid protein [Orchid fleck virus] gi...    67   1e-08
dbj|BAH97109.1| nucleocapsid protein [Orchid fleck virus]              64   9e-08
gb|AGN91968.1| nucleocapsid protein [Citrus leprosis virus nucle...    64   1e-07
gb|AGQ21972.1| nucleocapsid protein [Citrus necrotic spot virus]       63   2e-07
gb|AHH44825.1| nucleocapsid [Coffee ringspot virus]                    59   2e-06

>ref|YP_004927965.1| nucleocapsid protein [Potato yellow dwarf virus]
           gi|158342658|gb|ABW35154.1| nucleocapsid protein [Potato
           yellow dwarf virus] gi|293570308|gb|ADE45268.1|
           nucleocapsid protein [Potato yellow dwarf virus]
          Length = 472

 Score = 95.1 bits (235), Expect = 4e-17
 Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 2/251 (0%)
 Frame = +3

Query: 159 PFMQSTVVAAEY-DNDFFDAAKGNKTFKVNILEDDGILTTWETVKRSLEEGKISPVDILS 335
           P     +V  EY D DF+  +K    + ++ L    ++  W  ++ S++   IS   I  
Sbjct: 29  PAADGKLVQIEYSDADFW--SKLTTIYSLDDLGPSDLVAAWTRIRESIDNSTISESIIGE 86

Query: 336 IIELAMNIKSVED-TGRLLQWVQRDNDMLSGSSDLSKSRLMTGKIAKDIGKNMLVDEDFT 512
           I  +A +IK VED T R++          +    ++K+ L T  I    G+++ V  D T
Sbjct: 87  IFRVAAHIKKVEDKTSRIIGSFAPP----TARGVVTKTGLDTAPIV--FGQSVTVGADIT 140

Query: 513 MAFEEEENDEDTLAPDGREIKVKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDT 692
           +     +N   T+        V +A YLC+ LLRLM K  ++F R +++I+  +  FY  
Sbjct: 141 V-----QNTAPTVRTTDAGDAVVSAPYLCMALLRLMTKPVESFNRSLTTIRTSYGRFYGM 195

Query: 693 SSSEVMSFNISKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQH 872
            S+EV +F+    S+  +S GL +    N T+ + +      + R ++++  MRF   QH
Sbjct: 196 QSAEVTNFSAPLNSLQQLSTGLDTYPTCNSTMAWMMGFAEGSILRNNKNHGFMRFLIFQH 255

Query: 873 VELRGLHAYKL 905
            E+RG+  YK+
Sbjct: 256 AEMRGMQIYKM 266


>ref|YP_052850.1| N [Maize mosaic virus] gi|81940135|sp|Q6E0X1.1|NCAP_MMVR RecName:
           Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
           protein; Short=Protein N gi|49487512|gb|AAT66752.1| N
           [Maize mosaic virus]
          Length = 447

 Score = 91.7 bits (226), Expect = 4e-16
 Identities = 61/237 (25%), Positives = 106/237 (44%)
 Frame = +3

Query: 264 ILTTWETVKRSLEEGKISPVDILSIIELAMNIKSVEDTGRLLQWVQRDNDMLSGSSDLSK 443
           + + W  +  +L  G  S   + ++ ELA N+K+   TG +  ++    D   G  D + 
Sbjct: 62  VASDWTNLATALTNGTFSATHLRTLCELAFNLKAPTGTGTI--FIHEIADPWKGCIDAN- 118

Query: 444 SRLMTGKIAKDIGKNMLVDEDFTMAFEEEENDEDTLAPDGREIKVKAAGYLCLCLLRLMK 623
                   A D       D D  M+     +       +  E+K+KA  +LC  LLRL  
Sbjct: 119 --------APDTVAIPATDSDVNMS--TVSSGSTASGTEDAEVKMKAISFLCCTLLRLSV 168

Query: 624 KDPDNFMRGMSSIKRGFSLFYDTSSSEVMSFNISKASVIAISDGLRSNNKLNQTVVYCVA 803
           K+P + M+ ++SI++ F   Y  SS  + S   +++ +  I  G+ +      TV Y   
Sbjct: 169 KEPSHIMQAINSIRQRFGSLYGVSSPTLNSVTFNRSQLSRIKQGIETYPSARGTVFYYTR 228

Query: 804 TGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTN 974
                   T++ Y + RF   QH+EL G+H YK+   L   ++  +P  + L+W+ N
Sbjct: 229 YADATHGYTTKEYGICRFLLFQHLELEGMHIYKMLLALLGEWS-TVPIGLLLTWIRN 284


>ref|YP_224078.1| N [Taro vein chlorosis virus] gi|81929516|sp|Q5GA90.1|NCAP_TAVCV
           RecName: Full=Nucleoprotein; Short=NP; AltName:
           Full=Nucleocapsid protein; Short=Protein N
           gi|56480908|gb|AAV92082.1| N [Taro vein chlorosis virus]
          Length = 502

 Score = 87.8 bits (216), Expect = 6e-15
 Identities = 61/250 (24%), Positives = 114/250 (45%), Gaps = 1/250 (0%)
 Frame = +3

Query: 228 KTFKVNILEDDGILTTWETVKRSLEEGKISPVDILSIIELAMNIKSVEDTGRL-LQWVQR 404
           K ++V   +D  I + W  V  ++  G  S  ++ ++ ELA N++   +TG + +  V  
Sbjct: 50  KFWEVTAKDDPTIASDWAGVCTAITAGTFSATNLKTVCELAFNLRKPHETGNVFIHTVPS 109

Query: 405 DNDMLSGSSDLSKSRLMTGKIAKDIGKNMLVDEDFTMAFEEEENDEDTLAPDGREIKVKA 584
           D      +S +S   + T  I          + D T++           A +    K KA
Sbjct: 110 D-----WTSSISTDSVDTTPIPA-------TESDATLSTVSAAVQSG--AAEDAATKAKA 155

Query: 585 AGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMSFNISKASVIAISDGLRS 764
             +LC  L+RL  K+P + M  ++SI++ F   Y  +S+ + +   ++  +  I  G+ +
Sbjct: 156 ISFLCCALIRLSVKEPSHIMTAITSIRQRFGSLYGLASATLNAITFTRQQLSRIKQGIET 215

Query: 765 NNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLP 944
            +    T+ Y V         + +SY + RF   QH+EL G+H YK+   L   ++  +P
Sbjct: 216 YSLARGTIFYYVRYADTTYGSSDKSYGVCRFLLFQHLELEGMHIYKMILALLTEWS-TVP 274

Query: 945 TAVFLSWLTN 974
             + L+W+ N
Sbjct: 275 IGLLLTWIRN 284


>gb|AHN10094.1| nucleocapsid protein [Eggplant mottled dwarf virus]
          Length = 476

 Score = 85.1 bits (209), Expect = 4e-14
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 14/244 (5%)
 Frame = +3

Query: 216 AKGNKTFKVNILEDDGILTTWETVKRSLEEGKISPVDILSIIELAMNIKSVEDTG-RLLQ 392
           +K    + +  +E+  I T++  +  S+E+  ++ V+I  I  +A  IK++E +  RLL 
Sbjct: 44  SKITSLYDLGPMENADIATSFIKLMDSIEKSTLTEVEIAMIFRIAFQIKNIERSSERLLT 103

Query: 393 WVQRDNDMLSGSSDLSKSRLMTGKIAKDIGKNMLVDEDFTMAFEEEENDEDTLA------ 554
             +   D   G S++ KS L                +D  +A EE++    ++       
Sbjct: 104 NAKPHPD---GKSNIIKSAL----------------DDVRLAGEEQQTAAASITIPAGGI 144

Query: 555 -------PDGREIKVKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMS 713
                  P   ++ V    Y+C+ LLRL+ K  ++F R + ++K  F  FY   S  V S
Sbjct: 145 SPQPKPTPSSADVAVSGP-YICMALLRLVAKTVESFQRSLPTLKSSFGRFYGVQSQAVNS 203

Query: 714 FNISKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLH 893
           F+    S++ I  GL +    +QT+ + +      + R+ +++  MR+   QH E+RG+ 
Sbjct: 204 FSPPTQSLMQIIQGLDTYTAASQTLSWMLGQAESTIPRSDKNHGFMRYLIYQHAEMRGMQ 263

Query: 894 AYKL 905
            YK+
Sbjct: 264 VYKM 267


>gb|AHM10390.1| nucleocapsid protein, partial [Taro vein chlorosis virus]
          Length = 349

 Score = 81.6 bits (200), Expect = 4e-13
 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 1/228 (0%)
 Frame = +3

Query: 294 SLEEGKISPVDILSIIELAMNIKSVEDTGRL-LQWVQRDNDMLSGSSDLSKSRLMTGKIA 470
           ++  G  S  ++ +I ELA N++   +TG + +  +  D      SS +S   + T  I 
Sbjct: 5   AITAGTFSATNLKTICELAFNLRKPHETGNVFIHTIPSD-----WSSSISTDGVDTTPIP 59

Query: 471 KDIGKNMLVDEDFTMAFEEEENDEDTLAPDGREIKVKAAGYLCLCLLRLMKKDPDNFMRG 650
                    + D T++           A +    K KA  +LC  L+RL  K+P + M  
Sbjct: 60  A-------TETDVTLSTVSAAVQSG--AAEDAATKAKAISFLCCALIRLSVKEPSHIMTA 110

Query: 651 MSSIKRGFSLFYDTSSSEVMSFNISKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRT 830
           ++SI++ F   Y  SS+ + +   ++  +  I  G+ + +    T+ Y V       + +
Sbjct: 111 ITSIRQRFGSLYGLSSATLNAITFTRQQLSRIKQGIETYSVARGTIFYYVRYADTTYTSS 170

Query: 831 SQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTN 974
            +SY + RF   QH+EL G+H YK+   L   ++  +P  + L+W+ N
Sbjct: 171 DKSYGVCRFLLFQHLELEGMHIYKMILALLTEWS-TVPIGLLLTWIRN 217


>emb|CCK73133.1| nucleocapsid protein [Eggplant mottled dwarf virus]
          Length = 476

 Score = 80.9 bits (198), Expect = 7e-13
 Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 15/245 (6%)
 Frame = +3

Query: 216 AKGNKTFKVNILEDDGILTTWETVKRSLEEGKISPVDILSIIELAMNIKSVEDTGRLLQW 395
           +K    + ++ +E+  I  ++  V  S+E+  ++  +I  I  +A  IK++E +      
Sbjct: 44  SKITSLYDLSPMENADIAASFIKVMDSIEKSTLTEGEIAMIFRIAFQIKNIERS------ 97

Query: 396 VQRDNDMLSGSSDLSKSRLMTGKIAKDIGKNMLVD--EDFTMAFEEEENDEDTLA----- 554
                         S+S L   K+  D   N++    +D  +A EE++    ++      
Sbjct: 98  --------------SESLLSNAKLHPDGKSNIIKSALDDVRLAGEEQQTAAASITIPAGG 143

Query: 555 --------PDGREIKVKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVM 710
                   P   ++ V    Y+C+ LLRL+ K  ++F R + ++K  F  FY   S  V 
Sbjct: 144 ISPQPKPTPSSADVAVSGP-YICMALLRLVAKTVESFQRSLPTLKSSFGRFYGVQSQAVN 202

Query: 711 SFNISKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGL 890
           SF+    S++ I  GL +    +QT+ + +      + R+ +++  MR+   QH E+RG+
Sbjct: 203 SFSPPTQSLMQIIQGLDTYTAASQTLSWMLGQAESTIPRSDKNHGFMRYLIYQHAEMRGM 262

Query: 891 HAYKL 905
             YK+
Sbjct: 263 QVYKM 267


>ref|YP_002308454.1| nucleocapsid protein [Maize Iranian mosaic virus]
           gi|77022083|gb|ABA60884.1| nucleocapsid protein [Maize
           Iranian mosaic virus]
          Length = 493

 Score = 77.4 bits (189), Expect = 8e-12
 Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 4/289 (1%)
 Frame = +3

Query: 120 DDVLEEFSQLKVRPFMQSTVVAAEYDNDFFDAAKGNKTFKVNILEDDGILTTWETVKRSL 299
           DDV     +    P  +S +   E+ +   +  K  K ++V  ++D  ++T W  V+ +L
Sbjct: 16  DDVKSLTQKASEIPSSKSIIPQTEFSDA--ELKKTLKFWEVTAMDDATMVTQWSGVQSAL 73

Query: 300 EEGKISPVDILSIIELAMNIKSVEDTGRLLQWVQRDNDMLSGSSDLSKSRLMTGKIAKDI 479
             G  S  ++  + +LA N++   + G +          +    D  K+ L   + A   
Sbjct: 74  AGGTFSAQNLKELCQLAFNLRKPHEPGHVF---------IHNIPDSWKAYL---EAATPD 121

Query: 480 GKNMLVDED----FTMAFEEEENDEDTLAPDGREIKVKAAGYLCLCLLRLMKKDPDNFMR 647
           G  +   E+     T+         D  AP+    K  A  +L   L+RL  K+P + M 
Sbjct: 122 GTAIPATENESTMSTIGAAAATGSADETAPN----KAAAIAFLSCTLMRLAIKEPKHIMD 177

Query: 648 GMSSIKRGFSLFYDTSSSEVMSFNISKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSR 827
            M++I+  +   Y  SS  + S   + + +  I  GL +      T+ Y         + 
Sbjct: 178 AMTNIRSRYGSLYGRSSPFLNSVTFNLSQLSRIKQGLETYAVARGTLFYYTRHADSTYTY 237

Query: 828 TSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWLTN 974
           T+ SY + R+   QH+EL G+H YK+   L   +   +P  + L+W+ N
Sbjct: 238 TTPSYGICRYLLFQHLELEGMHIYKMLLALQTEW-ATVPMRLLLTWIRN 285


>ref|NP_620496.1| nucleocapsid protein [Rice yellow stunt virus]
           gi|75569073|sp|Q86523.1|NCAP_RYSV RecName:
           Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
           protein; Short=Protein N gi|414194|emb|CAA53224.1|
           nucleocapsid protein [Rice yellow stunt virus]
           gi|2961423|dbj|BAA25154.1| nucleocapsid protein [Rice
           yellow stunt virus]
          Length = 521

 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 56/247 (22%), Positives = 103/247 (41%)
 Frame = +3

Query: 228 KTFKVNILEDDGILTTWETVKRSLEEGKISPVDILSIIELAMNIKSVEDTGRLLQWVQRD 407
           K F++  L D  I+  W T+K ++     S   + SI+++A N++ +      L      
Sbjct: 52  KLFQIGALTDAEIVAAWTTIKTAMGNNTFSETHMRSIVKIACNLRGITPGSTPLLVTYNP 111

Query: 408 NDMLSGSSDLSKSRLMTGKIAKDIGKNMLVDEDFTMAFEEEENDEDTLAPDGREIKVKAA 587
               + +   S   + +G     +    ++ ++     E+ E +           K +A 
Sbjct: 112 PQSATWAPAPSTDAIYSGTPVAGV----IIPQNTGAGGEDTETEAS---------KARAI 158

Query: 588 GYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMSFNISKASVIAISDGLRSN 767
            ++C  LLR + K  ++    + ++K  +S  Y   S+ + ++N S      +  G  + 
Sbjct: 159 AFICCYLLRFIVKTEEHLTNSLGNLKLQYSRLYSAQSATLSNWNPSNTWASRVKLGFDTY 218

Query: 768 NKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPT 947
             L  TV Y +A+    L   + +Y L R    QH+EL GL  YK+   L   F    P 
Sbjct: 219 LTLRATVAYNIASADALLVPENVNYGLCRMLVFQHLELSGLQLYKMAMTLIAHFKLIEPN 278

Query: 948 AVFLSWL 968
             FLSW+
Sbjct: 279 K-FLSWI 284


>dbj|BAI79326.1| nucleocapsid protein [Rice yellow stunt virus]
          Length = 513

 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 56/247 (22%), Positives = 103/247 (41%)
 Frame = +3

Query: 228 KTFKVNILEDDGILTTWETVKRSLEEGKISPVDILSIIELAMNIKSVEDTGRLLQWVQRD 407
           K F++  L D  I+  W T+K ++     S   + SI+++A N++ +      L      
Sbjct: 52  KLFQIGALTDAEIVAAWTTIKTAMGNNTFSETHMRSIVKIACNLRGITPGSTPLLVTYNP 111

Query: 408 NDMLSGSSDLSKSRLMTGKIAKDIGKNMLVDEDFTMAFEEEENDEDTLAPDGREIKVKAA 587
               + +   S   + +G     +    ++ ++     E+ E +           K +A 
Sbjct: 112 PQSATWAPAPSTDAIYSGTPVAGV----IIPQNTGAGGEDTETEAS---------KARAI 158

Query: 588 GYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMSFNISKASVIAISDGLRSN 767
            ++C  LLR + K  ++    + ++K  +S  Y   S+ + ++N S      +  G  + 
Sbjct: 159 AFICCYLLRFIVKTEEHLTNSLGNLKLQYSRLYSAQSATLSNWNPSNTWASRVKLGFDTY 218

Query: 768 NKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPT 947
             L  TV Y +A+    L   + +Y L R    QH+EL GL  YK+   L   F    P 
Sbjct: 219 LTLRATVAYNIASADALLVPENVNYGLCRMLVFQHLELSGLQLYKMAMTLIAHFKLIEPN 278

Query: 948 AVFLSWL 968
             FLSW+
Sbjct: 279 K-FLSWI 284


>ref|YP_001294924.1| nucleocapsid protein [Orchid fleck virus]
           gi|94384803|dbj|BAE93579.1| nucleocapsid protein [Orchid
           fleck virus]
          Length = 450

 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 54/235 (22%), Positives = 101/235 (42%), Gaps = 7/235 (2%)
 Frame = +3

Query: 285 VKRSLEEGKISPVDILSIIELAMNIKSVEDTGRLLQWVQRDNDMLSGSSDLSKSRLMTGK 464
           V  +  E       +LS ++LA     +   G ++Q       ++ G ++ S    MT  
Sbjct: 58  VAEAFREATQGTETVLSKLQLAQ----IMSLGFMIQMSGDPEALMQGVAEGSFLETMTMP 113

Query: 465 IAKDIGKNMLVDEDFTMAFEEEENDEDTLAPDGREI-------KVKAAGYLCLCLLRLMK 623
             K    + +      MA +  E   D L    ++        K +A  Y+CL L+RL  
Sbjct: 114 DIKTRQDSRITAAIAAMALDPTEEGPDDLEDRSQQADAESAMSKARAMVYICLSLMRLAV 173

Query: 624 KDPDNFMRGMSSIKRGFSLFYDTSSSEVMSFNISKASVIAISDGLRSNNKLNQTVVYCVA 803
           K  ++FM+G+  IK+ +S+     S  + +++ S+     I+D     + L  T+ +  A
Sbjct: 174 KPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCDDLKATLCHHCA 233

Query: 804 TGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWL 968
              +      + + L+RF   QHV+L G+  Y ++ ++ + F   L     L+WL
Sbjct: 234 IADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRYFT-LLTPGQLLTWL 287


>dbj|BAH97109.1| nucleocapsid protein [Orchid fleck virus]
          Length = 450

 Score = 63.9 bits (154), Expect = 9e-08
 Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 7/235 (2%)
 Frame = +3

Query: 285 VKRSLEEGKISPVDILSIIELAMNIKSVEDTGRLLQWVQRDNDMLSGSSDLSKSRLMTGK 464
           V  +  E       +LS ++LA     +   G ++Q       ++ G ++ S    MT  
Sbjct: 58  VAEAFREATQGTETVLSKLQLAQ----IMSLGFMIQMSGDPEALMQGVAEGSFLEAMTMP 113

Query: 465 IAKDIGKNMLVDEDFTMAFEEEENDEDTLAPDGREI-------KVKAAGYLCLCLLRLMK 623
             K    + +      MA +  E   + L    ++        K +A  Y+CL L+RL  
Sbjct: 114 DIKTRQDSRITAAIAAMALDPTEEGPNDLEDRSQQADAESAMSKARAMVYICLSLMRLAV 173

Query: 624 KDPDNFMRGMSSIKRGFSLFYDTSSSEVMSFNISKASVIAISDGLRSNNKLNQTVVYCVA 803
           K  ++FM+G+  IK+ +S+     S  + +++ S+     I+D     + L  T+ +  A
Sbjct: 174 KPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCDDLKATLCHHCA 233

Query: 804 TGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWL 968
              +      + + L+RF   QHV+L G+  Y ++ ++ + F   L     L+WL
Sbjct: 234 IADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRHFT-LLTPGQLLTWL 287


>gb|AGN91968.1| nucleocapsid protein [Citrus leprosis virus nuclear type]
          Length = 450

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 7/213 (3%)
 Frame = +3

Query: 351 MNIKSVEDTGRLLQWVQRDNDMLSGSSDLSKSRLMTGKIAKDIGKNMLVDEDFTMAFEEE 530
           + +  +   G ++Q       ++ G ++ S    MT    K    + +      MA +  
Sbjct: 76  LQLAQIMSLGFMVQMSGDPAALMQGVAEGSFLETMTMPDIKTRQDSRITAAIAAMALDPT 135

Query: 531 ENDEDTLAPDGREI-------KVKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGFSLFYD 689
           E   D L    ++        K +A  Y+CL L+RL  K  ++FM+G+  IK+ +S+   
Sbjct: 136 EEGPDDLEDRSQQAEAENALSKARAMVYICLSLMRLAVKPAESFMKGVHQIKQAYSVLVG 195

Query: 690 TSSSEVMSFNISKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMRFAFCQ 869
             S  + +++ S+     I+D     + L  T+ +  A   +      + + L+RF   Q
Sbjct: 196 EHSEFLFNYSYSEGMCRNIADMFNQCDDLKATLCHHCAIADETHHTNRKRHGLLRFLILQ 255

Query: 870 HVELRGLHAYKLFYELDKVFNDRLPTAVFLSWL 968
           HV+L G+  Y ++ ++ + F   L     L+WL
Sbjct: 256 HVDLTGMIPYGMYIDMRRHFT-LLTPGQLLTWL 287


>gb|AGQ21972.1| nucleocapsid protein [Citrus necrotic spot virus]
          Length = 450

 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 9/237 (3%)
 Frame = +3

Query: 285 VKRSLEEGKISPVDILSIIELAMNIKSVEDTGRLLQWVQRDNDMLSGSSDLSKSRLMTGK 464
           V  +  E       +LS ++LA     +   G ++Q       ++ G ++ S    MT  
Sbjct: 58  VAEAFREATQGTETVLSKLQLAQ----IMSLGFMVQMSGDPEALMQGVAEGSFLETMTMP 113

Query: 465 IAKDIGKNMLVDEDFTMAFEEEENDEDTLAPDGRE---------IKVKAAGYLCLCLLRL 617
             K    + +      MA +  E   D   P+ R           K +A  Y+CL L+RL
Sbjct: 114 DIKTRQDSRITAAIAAMALDPTEEGPDD--PEDRSQQADAESALSKARAMVYICLSLMRL 171

Query: 618 MKKDPDNFMRGMSSIKRGFSLFYDTSSSEVMSFNISKASVIAISDGLRSNNKLNQTVVYC 797
             K  ++FM+G+  IK+ +S+     S  + +++ S+     I+D     + L  T+ + 
Sbjct: 172 AVKPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMFNQCDDLKATLCHH 231

Query: 798 VATGMKDLSRTSQSYHLMRFAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWL 968
            A   +      + + L+RF   QHV+L G+  Y ++ ++ + F   L     L+WL
Sbjct: 232 CAIADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRHFT-LLTPGQLLTWL 287


>gb|AHH44825.1| nucleocapsid [Coffee ringspot virus]
          Length = 446

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
 Frame = +3

Query: 510 TMAFEEEEND--EDTLAPDGRE---IKVKAAGYLCLCLLRLMKKDPDNFMRGMSSIKRGF 674
           TM  + +E D  E   AP   E    + +A  Y+CL L+RL  K  D FM+G   +   +
Sbjct: 129 TMNIDPDEGDQSEGGQAPTEEEDAASQCRAISYICLSLMRLAVKRVDTFMKGTPQLVTAY 188

Query: 675 SLFYDTSSSEVMSFNISKASVIAISDGLRSNNKLNQTVVYCVATGMKDLSRTSQSYHLMR 854
            +     S  + SFN S+     IS      + L +T+ +  A   +        +  +R
Sbjct: 189 HILMGDHSPFLSSFNYSRGLCSNISSLFNQCDDLKRTLAHHCAVADESHHNNRTVHGPLR 248

Query: 855 FAFCQHVELRGLHAYKLFYELDKVFNDRLPTAVFLSWL 968
           F   QH++L G+  Y ++ ++ +  +   P A+ L+WL
Sbjct: 249 FLILQHMDLNGMVPYGMYVDMKRGLSMLSPGAI-LTWL 285