BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00044177
         (933 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...   477   e-132
gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlise...   439   e-121
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   397   e-108
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   391   e-106
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...   382   e-103
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              374   e-101
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   374   e-101
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put...   373   e-101
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...   373   e-101
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   373   e-101
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   372   e-101
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   372   e-101
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   368   2e-99
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   367   4e-99
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   364   3e-98
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   364   3e-98
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   363   4e-98
ref|XP_002299208.2| DNA-directed RNA polymerase alpha subunit fa...   361   3e-97
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   350   3e-94
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   343   7e-92

>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score =  477 bits (1227), Expect = e-132
 Identities = 242/311 (77%), Positives = 266/311 (85%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            Y EGFSVSL++FFL  DVLE IQ+ +QKI PLL HLRAS+SES+ALQ+D YLR+VKIPV 
Sbjct: 613  YTEGFSVSLREFFLPLDVLESIQENLQKISPLLFHLRASYSESIALQIDNYLRNVKIPVT 672

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             F++ SSA+G LIDSKSESALSKVVQQIGFLGIQ+SDKGKFY+ETLV+DMSSLFQ KYPS
Sbjct: 673  NFVK-SSAVGRLIDSKSESALSKVVQQIGFLGIQLSDKGKFYTETLVQDMSSLFQKKYPS 731

Query: 573  YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDV 394
             D  P EEF LV RPLFRGLNPYQEMVH            RGLTEPGTLFKNLMAILRDV
Sbjct: 732  CDGYPAEEFSLVSRPLFRGLNPYQEMVHSIASREVIVRSTRGLTEPGTLFKNLMAILRDV 791

Query: 393  VICYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 214
            VIC+DGTVRNMCSNSI+QFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLD    
Sbjct: 792  VICHDGTVRNMCSNSIIQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDSSSS 851

Query: 213  XXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKE 34
               SW+MMKEILLCGV FKND  DRRV+LYL+ CDCGRKHCQE+AAL VKN LK++SLK+
Sbjct: 852  SNSSWEMMKEILLCGVSFKNDITDRRVILYLSHCDCGRKHCQESAALVVKNQLKKVSLKD 911

Query: 33   AAIEFLIEYRS 1
             A+EFLIEYRS
Sbjct: 912  TAMEFLIEYRS 922


>gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlisea aurea]
          Length = 1379

 Score =  439 bits (1130), Expect = e-121
 Identities = 218/307 (71%), Positives = 251/307 (81%)
 Frame = -1

Query: 927  EGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVAKF 748
            EGFSVSLKDFFL R+VLE I++ IQKI PLL HLR  +SES+ALQL++YL SVK PV +F
Sbjct: 614  EGFSVSLKDFFLPREVLEGIRENIQKISPLLSHLRDHYSESIALQLESYLSSVKTPVTEF 673

Query: 747  IRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPSYD 568
            I +SSAIG L DS+SES LSKVVQQIGF G Q+S KGKFY+E LVKD+SSLF+ KYPS D
Sbjct: 674  IVNSSAIGFLTDSRSESGLSKVVQQIGFCGTQLSSKGKFYTERLVKDLSSLFRSKYPSSD 733

Query: 567  DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDVVI 388
            D P E+FGLV +PLFRGLNPYQEMVH            RGLTEPGTLFKNLMAILRDVVI
Sbjct: 734  DCPTEDFGLVCQPLFRGLNPYQEMVHSISSREVIVRSSRGLTEPGTLFKNLMAILRDVVI 793

Query: 387  CYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXXXX 208
            CYDGTVRNMCSNSI+QFEY  N+ +I +EFCAGDPVGVLAAT+MSNPAYKAVLD      
Sbjct: 794  CYDGTVRNMCSNSIIQFEYSANSTDIVTEFCAGDPVGVLAATSMSNPAYKAVLDSSSSSN 853

Query: 207  XSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEAA 28
             +W MMK+ILLC   FKND +DRRV+LYL  C+CGRKHCQET AL V+NHLK+++LK+ A
Sbjct: 854  SAWQMMKDILLCATSFKNDISDRRVILYLTDCECGRKHCQETGALVVQNHLKKVTLKDTA 913

Query: 27   IEFLIEY 7
            ++FLIEY
Sbjct: 914  VDFLIEY 920


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score =  397 bits (1020), Expect = e-108
 Identities = 203/308 (65%), Positives = 243/308 (78%), Gaps = 1/308 (0%)
 Frame = -1

Query: 927  EGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVAKF 748
            EGFS+SL+DF++T+ V + IQ+ IQ +  LLHHLR+S++ESV +QL+ +LR+ K+PV  F
Sbjct: 616  EGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHLRNEKLPVIDF 675

Query: 747  IRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPSYD 568
            +  SS +G LIDSKSESA +KVVQQIGFLG+QISD+GKFY++TLV DM+ LFQ KYPS  
Sbjct: 676  VLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYTKTLVHDMAQLFQKKYPSVG 735

Query: 567  DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDVVI 388
             +P EEFGLV   LF GL+PYQ M+H            RGLTEPGTLFKNLMAILRDVVI
Sbjct: 736  TNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVI 795

Query: 387  CYDGTVRNMCSNSIVQFEYGVN-TANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXXX 211
            CYDGTVRN+ SNSI+QFEYG +  +N+ SEFCAGDPVGVLAATAMSNPAYKAVLD     
Sbjct: 796  CYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAVLDSSPSS 855

Query: 210  XXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEA 31
              SW+MMKEILLCGV FKND +DRRV+LYLN C C R +C+E AA  VKNHL ++ LK+A
Sbjct: 856  NSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDA 915

Query: 30   AIEFLIEY 7
            A EFLIEY
Sbjct: 916  ADEFLIEY 923


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  391 bits (1005), Expect = e-106
 Identities = 201/308 (65%), Positives = 239/308 (77%), Gaps = 1/308 (0%)
 Frame = -1

Query: 927  EGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVAKF 748
            EGFS+SL+DF++T+ V + IQ+ IQ +  LLHHLR+S++ESV +QL+ +LR+ K+PV  F
Sbjct: 167  EGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHLRNEKLPVIDF 226

Query: 747  IRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPSYD 568
            +  SS +G LIDSKSESA +KVVQQIGFLG+QISD+GKFY  TLV DM+ LFQ KYPS  
Sbjct: 227  VLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYXXTLVHDMAQLFQKKYPSVG 286

Query: 567  DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDVVI 388
             +P EEFGLV   LF GL+PYQ M+H            RGLTEPGTLF NLMAILRDVVI
Sbjct: 287  TNPSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFXNLMAILRDVVI 346

Query: 387  CYDGTVRNMCSNSIVQFEYGVN-TANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXXX 211
            CYDGTVRN+ SNSI+QFEYG +  +N+ SEFCAGDPVGVLAATAMSNPAYKA LD     
Sbjct: 347  CYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAXLDSSPSS 406

Query: 210  XXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKEA 31
              SW+MMKEILLCGV FKND +DRRV+LYLN C C R +C+E AA  VKNHL ++ LK+A
Sbjct: 407  NSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDA 466

Query: 30   AIEFLIEY 7
            A EFLIEY
Sbjct: 467  ADEFLIEY 474


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  382 bits (981), Expect = e-103
 Identities = 192/312 (61%), Positives = 241/312 (77%), Gaps = 1/312 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSV L+DF+++R  ++DIQK IQ    LL+HLR++++E V  QL   +RSVK+PV+
Sbjct: 616  FSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEFVEFQLQNRIRSVKVPVS 675

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI +SSA+G LIDSKS+SA++K+VQQIGFLG+Q+SDKG+FYS+TLV+D++SL   KYPS
Sbjct: 676  HFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLVEDVASLCHSKYPS 735

Query: 573  YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDV 394
              D P  E+GLV    F GL+PY+ +VH            RGL+EPGTLFKNLMAILRDV
Sbjct: 736  DIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEPGTLFKNLMAILRDV 795

Query: 393  VICYDGTVRNMCSNSIVQFEYGVNTANIASE-FCAGDPVGVLAATAMSNPAYKAVLDXXX 217
            VICYDGTVRN+CSNSI+QFEYGVN  +     F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 796  VICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAATAMSNPAYKAVLDSTP 855

Query: 216  XXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLK 37
                SW++MKEILLC V FKN+  DRRV+LYLN C CGRK+C+E AA  VKN LK++SLK
Sbjct: 856  SSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAACLVKNQLKKVSLK 915

Query: 36   EAAIEFLIEYRS 1
            + A+EF+IEY +
Sbjct: 916  DTAVEFMIEYNN 927


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  374 bits (959), Expect = e-101
 Identities = 192/311 (61%), Positives = 237/311 (76%), Gaps = 2/311 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSVSL+DF +  +V ++IQK ++ I  LL++LR+ ++E + LQ + +LR  K+PVA
Sbjct: 673  FSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLRLTKVPVA 732

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI +SSA+G+LIDSKS+SA++KVVQQIGFLG Q+S+KGKFYS TLV+ M+ LF+ KYP 
Sbjct: 733  NFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKSKYPF 792

Query: 573  YD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
            +  D P  EFGL+    F GL+PY+EMVH            RGL+EPGTLFKNLMAILRD
Sbjct: 793  HGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRD 852

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNTANIASEFC-AGDPVGVLAATAMSNPAYKAVLDXX 220
            VVICYDGTVRN+CSNSI+QFEYGV        F  AG+PVGVLAATAMSNPAYKAVLD  
Sbjct: 853  VVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSS 912

Query: 219  XXXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISL 40
                 SW++MKEILLC V FKND  DRRV+LYLN CDCGRK+C+E AA  VKN LK+ SL
Sbjct: 913  PSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASL 972

Query: 39   KEAAIEFLIEY 7
            K+ A+EF+IEY
Sbjct: 973  KDTAVEFMIEY 983


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  374 bits (959), Expect = e-101
 Identities = 192/311 (61%), Positives = 237/311 (76%), Gaps = 2/311 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSVSL+DF +  +V ++IQK ++ I  LL++LR+ ++E + LQ + +LR  K+PVA
Sbjct: 613  FSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLRLTKVPVA 672

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI +SSA+G+LIDSKS+SA++KVVQQIGFLG Q+S+KGKFYS TLV+ M+ LF+ KYP 
Sbjct: 673  NFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKSKYPF 732

Query: 573  YD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
            +  D P  EFGL+    F GL+PY+EMVH            RGL+EPGTLFKNLMAILRD
Sbjct: 733  HGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRD 792

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNTANIASEFC-AGDPVGVLAATAMSNPAYKAVLDXX 220
            VVICYDGTVRN+CSNSI+QFEYGV        F  AG+PVGVLAATAMSNPAYKAVLD  
Sbjct: 793  VVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSS 852

Query: 219  XXXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISL 40
                 SW++MKEILLC V FKND  DRRV+LYLN CDCGRK+C+E AA  VKN LK+ SL
Sbjct: 853  PSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASL 912

Query: 39   KEAAIEFLIEY 7
            K+ A+EF+IEY
Sbjct: 913  KDTAVEFMIEY 923


>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao] gi|508727914|gb|EOY19811.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            3 [Theobroma cacao]
          Length = 1675

 Score =  373 bits (958), Expect = e-101
 Identities = 189/311 (60%), Positives = 240/311 (77%), Gaps = 1/311 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSVSL+DF ++R+V+++IQK+IQ I PLL+ LR++++E V LQ++ ++R  K PVA
Sbjct: 614  FAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHIRVAKAPVA 673

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI +SSA+G LIDSKS+S ++KVVQQIGFLG+Q+S+KGKFYS+TLV+D++  FQ  YPS
Sbjct: 674  NFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQFQSIYPS 733

Query: 573  YD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
               D P  EFGL+    F GL+PY+ MVH            RGL+EPGTLFKNLMAILRD
Sbjct: 734  DGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRD 793

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXX 217
            VVICYDGTVRN+ SNSI+QF+YG+N A    +F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 794  VVICYDGTVRNISSNSIIQFQYGLN-ARTKPQFPAGEPVGVLAATAMSNPAYKAVLDSTP 852

Query: 216  XXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLK 37
                SW++MKEILLC V  KND  DRRV+LYL  CDCGRK+CQE AA  VKNHL+++ LK
Sbjct: 853  SSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLK 912

Query: 36   EAAIEFLIEYR 4
            + A+E + EY+
Sbjct: 913  DTAVELIFEYK 923


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  373 bits (958), Expect = e-101
 Identities = 189/311 (60%), Positives = 240/311 (77%), Gaps = 1/311 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSVSL+DF ++R+V+++IQK+IQ I PLL+ LR++++E V LQ++ ++R  K PVA
Sbjct: 614  FAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHIRVAKAPVA 673

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI +SSA+G LIDSKS+S ++KVVQQIGFLG+Q+S+KGKFYS+TLV+D++  FQ  YPS
Sbjct: 674  NFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQFQSIYPS 733

Query: 573  YD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
               D P  EFGL+    F GL+PY+ MVH            RGL+EPGTLFKNLMAILRD
Sbjct: 734  DGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRD 793

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXX 217
            VVICYDGTVRN+ SNSI+QF+YG+N A    +F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 794  VVICYDGTVRNISSNSIIQFQYGLN-ARTKPQFPAGEPVGVLAATAMSNPAYKAVLDSTP 852

Query: 216  XXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLK 37
                SW++MKEILLC V  KND  DRRV+LYL  CDCGRK+CQE AA  VKNHL+++ LK
Sbjct: 853  SSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLK 912

Query: 36   EAAIEFLIEYR 4
            + A+E + EY+
Sbjct: 913  DTAVELIFEYK 923


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  373 bits (957), Expect = e-101
 Identities = 187/310 (60%), Positives = 229/310 (73%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSVSL DFF  +  L++IQ+ IQ + PLL  LR+SF+E V +Q + ++R  K PV 
Sbjct: 414  FSEGFSVSLHDFFFPKSELQNIQRNIQDLSPLLLQLRSSFNELVQVQFENHIREFKSPVG 473

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI  SSA+G +IDS+S+SA+ K+VQQIGFLG+Q+SD+ KFYS  LV+D++SLF  KYP 
Sbjct: 474  NFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYSRGLVEDVASLFHQKYPF 533

Query: 573  YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDV 394
             D  P EEFG V R  F GL+PY+E+VH            +GL EPGTLFKNLMA+LRDV
Sbjct: 534  ADVYPSEEFGFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAVLRDV 593

Query: 393  VICYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 214
            VICYDGTVRN+ SNS++QFEYGV      + F AGDPVGVLAATAMSNPAYKAVLD    
Sbjct: 594  VICYDGTVRNISSNSVIQFEYGVGGMQSQNLFPAGDPVGVLAATAMSNPAYKAVLDSSPN 653

Query: 213  XXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKE 34
               SWDMMKEIL C   F+ND  DRRV+LYLN C CGRK+CQE A+  VKNHLK++SL++
Sbjct: 654  SNSSWDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKKVSLRD 713

Query: 33   AAIEFLIEYR 4
            AAIE  IEY+
Sbjct: 714  AAIELAIEYK 723


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  372 bits (956), Expect = e-101
 Identities = 189/310 (60%), Positives = 238/310 (76%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + +GFSVSL+DF L++  L +IQKEIQ ++ LL+H  ++ +E V LQ++ ++R VK+ VA
Sbjct: 614  FADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVA 673

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
            KFI  SS +G+LIDSKS+SA+SKVVQQ GFLG+Q+SD+GKFYS+TLV+D++S F+  YP 
Sbjct: 674  KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 733

Query: 573  YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDV 394
              + P  ++GL+    F GL+PY+EM H            RGL+EPGTLFKNLMA+LRDV
Sbjct: 734  DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 793

Query: 393  VICYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 214
            VICYDGTVRN+CSNSI+QF+Y VN     S F AG+PVGVLAATAMSNPAYKAVLD    
Sbjct: 794  VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 853

Query: 213  XXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKE 34
               SW++MKEILLC V F ND  DRRV+LYLN C CGRK+CQE AA  VKN LKR+SLK+
Sbjct: 854  SNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD 913

Query: 33   AAIEFLIEYR 4
            AA+EFLIEY+
Sbjct: 914  AAVEFLIEYK 923


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  372 bits (956), Expect = e-101
 Identities = 189/310 (60%), Positives = 238/310 (76%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + +GFSVSL+DF L++  L +IQKEIQ ++ LL+H  ++ +E V LQ++ ++R VK+ VA
Sbjct: 615  FADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVA 674

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
            KFI  SS +G+LIDSKS+SA+SKVVQQ GFLG+Q+SD+GKFYS+TLV+D++S F+  YP 
Sbjct: 675  KFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPM 734

Query: 573  YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDV 394
              + P  ++GL+    F GL+PY+EM H            RGL+EPGTLFKNLMA+LRDV
Sbjct: 735  DLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDV 794

Query: 393  VICYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 214
            VICYDGTVRN+CSNSI+QF+Y VN     S F AG+PVGVLAATAMSNPAYKAVLD    
Sbjct: 795  VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 854

Query: 213  XXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKE 34
               SW++MKEILLC V F ND  DRRV+LYLN C CGRK+CQE AA  VKN LKR+SLK+
Sbjct: 855  SNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD 914

Query: 33   AAIEFLIEYR 4
            AA+EFLIEY+
Sbjct: 915  AAVEFLIEYK 924


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  368 bits (944), Expect = 2e-99
 Identities = 190/312 (60%), Positives = 237/312 (75%), Gaps = 2/312 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSV L+DF L R  ++DIQK +++I PLL H+R  ++E V +QL+ ++R VK PV+
Sbjct: 612  FSEGFSVGLEDFALPRASIQDIQKGLKEISPLLFHMRTVYNELVEMQLENHIRKVKEPVS 671

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI +SSA+G LIDSKS+SA++KVVQQ+GFLG Q+ D+GK YS+TLV+D+SSL+Q KYPS
Sbjct: 672  NFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYDQGKLYSKTLVEDVSSLYQNKYPS 731

Query: 573  -YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
               D P  EFGLV R    GL+P + M+H            RGL+EPGTLFKNLMA LRD
Sbjct: 732  DIVDYPSAEFGLVHRGFVHGLDPVEGMIHSIATREVIVRSSRGLSEPGTLFKNLMATLRD 791

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNTANIASE-FCAGDPVGVLAATAMSNPAYKAVLDXX 220
            VVICYDGTVRN+CSNSI+QFEYGV + +     F AG+PVGVLAATAMSNPAYKAVLD  
Sbjct: 792  VVICYDGTVRNVCSNSIIQFEYGVKSGSGPENLFPAGEPVGVLAATAMSNPAYKAVLDST 851

Query: 219  XXXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISL 40
                 SWD+MKEILLC V FKN+  DRRV+LYLN C CGRK+C+E AA  VKN LK++SL
Sbjct: 852  PSSNSSWDLMKEILLCKVNFKNELIDRRVVLYLNDCGCGRKYCREHAAYLVKNRLKKVSL 911

Query: 39   KEAAIEFLIEYR 4
            K+ A+EF+IEY+
Sbjct: 912  KDTAVEFMIEYQ 923


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  367 bits (942), Expect = 4e-99
 Identities = 184/311 (59%), Positives = 239/311 (76%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + +GFSV L+DF ++++V+++I K+IQ I PLL+HLR++++E V LQL+  +R  K PV 
Sbjct: 617  FAQGFSVGLEDFSISQEVIKNITKDIQLISPLLYHLRSTYNELVELQLENQIRFAKAPVT 676

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI  SS++G+LID KS+SA++KVVQQIGFLG+QISD+GKFYS+TLV+D+S L+  KYP 
Sbjct: 677  NFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRGKFYSKTLVEDVSCLYTRKYPE 736

Query: 573  YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDV 394
              D P  E GL+    F GL+PY+E+VH            RGLTEPGTLFKNLMAILRDV
Sbjct: 737  NVDYPSAEHGLIRSCFFHGLDPYEEIVHSISTREVIVRSSRGLTEPGTLFKNLMAILRDV 796

Query: 393  VICYDGTVRNMCSNSIVQFEYGVNTANIASEFCAGDPVGVLAATAMSNPAYKAVLDXXXX 214
            VICYDGTVRN+CSNSI+QFEYG  +A   + + AG+PVGVLAATAMSNPAYKAVLD    
Sbjct: 797  VICYDGTVRNVCSNSIIQFEYGRGSAR--NLYPAGEPVGVLAATAMSNPAYKAVLDSSPS 854

Query: 213  XXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLKE 34
               SW++MKEILLC   F+N+  DRRV+LYLN C CGRK+C+E A   V+N LK++SLK+
Sbjct: 855  SNSSWELMKEILLCKAIFRNELIDRRVILYLNHCGCGRKYCREQATYLVQNQLKKVSLKD 914

Query: 33   AAIEFLIEYRS 1
             A+EF+IEY++
Sbjct: 915  TAVEFMIEYKN 925


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  364 bits (934), Expect = 3e-98
 Identities = 188/312 (60%), Positives = 233/312 (74%), Gaps = 3/312 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSV L D+ +    L+ +QK IQ + PLL+ LR++F+E V LQL+ +LRSVK+P  
Sbjct: 613  FSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFT 672

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI   S++G L DSKSESA++KVVQQIGFLG+Q+SDKG+FYS++L++D++SLF  +Y S
Sbjct: 673  NFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSS 732

Query: 573  YD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
               D P  EFGLV    F GL+PY+EMVH            RGLTEPGTLFKNLMAILRD
Sbjct: 733  DKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRD 792

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNTANIA--SEFCAGDPVGVLAATAMSNPAYKAVLDX 223
            VVICYDGTVRN+CSNSI+Q EYG+    +   S F  G+PVGVLAATAMS PAYKAVLD 
Sbjct: 793  VVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDS 852

Query: 222  XXXXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRIS 43
                  SWDMMKEILLC V FKN+  DRRV+LYLN C CGRK+C E AA  VK+HLK+++
Sbjct: 853  TPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVT 912

Query: 42   LKEAAIEFLIEY 7
            LK+AA++F+IEY
Sbjct: 913  LKDAAMDFMIEY 924


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  364 bits (934), Expect = 3e-98
 Identities = 188/312 (60%), Positives = 233/312 (74%), Gaps = 3/312 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSV L D+ +    L+ +QK IQ + PLL+ LR++F+E V LQL+ +LRSVK+P  
Sbjct: 643  FSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFT 702

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI   S++G L DSKSESA++KVVQQIGFLG+Q+SDKG+FYS++L++D++SLF  +Y S
Sbjct: 703  NFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSS 762

Query: 573  YD-DSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
               D P  EFGLV    F GL+PY+EMVH            RGLTEPGTLFKNLMAILRD
Sbjct: 763  DKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRD 822

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNTANIA--SEFCAGDPVGVLAATAMSNPAYKAVLDX 223
            VVICYDGTVRN+CSNSI+Q EYG+    +   S F  G+PVGVLAATAMS PAYKAVLD 
Sbjct: 823  VVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDS 882

Query: 222  XXXXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRIS 43
                  SWDMMKEILLC V FKN+  DRRV+LYLN C CGRK+C E AA  VK+HLK+++
Sbjct: 883  TPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVT 942

Query: 42   LKEAAIEFLIEY 7
            LK+AA++F+IEY
Sbjct: 943  LKDAAMDFMIEY 954


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  363 bits (933), Expect = 4e-98
 Identities = 190/313 (60%), Positives = 238/313 (76%), Gaps = 2/313 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSVSL+DF ++R V + I +  + I PLL +LR++F+E V LQ++ ++R VK PV 
Sbjct: 619  FSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVELQVENHIRDVKQPVR 678

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
            +FI  SSA+G+LIDSKS++A++KVVQQIGFLG+Q+SD+GK YS+TLV+D++S F  KYP+
Sbjct: 679  EFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLASHFLSKYPA 738

Query: 573  -YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
               D P  ++GL+    F GL+ Y+EM H            RGL+EPGTLFKNLMAILRD
Sbjct: 739  NLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAILRD 798

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNTANIA-SEFCAGDPVGVLAATAMSNPAYKAVLDXX 220
            VVICYDGTVRN+ SNSI+QFEYGV     + S F AG+PVGVLAATAMSNPAYKAVLD  
Sbjct: 799  VVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAATAMSNPAYKAVLDST 858

Query: 219  XXXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISL 40
                 SWDMMKEILLC VGFKND ADRRV+LYLN C CGR +CQE AA  VKNHL+++SL
Sbjct: 859  PSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAAYLVKNHLEKVSL 918

Query: 39   KEAAIEFLIEYRS 1
            K+ A  F+IEY+S
Sbjct: 919  KDIAKCFMIEYKS 931


>ref|XP_002299208.2| DNA-directed RNA polymerase alpha subunit family protein [Populus
            trichocarpa] gi|550346661|gb|EEE84013.2| DNA-directed RNA
            polymerase alpha subunit family protein [Populus
            trichocarpa]
          Length = 842

 Score =  361 bits (926), Expect = 3e-97
 Identities = 187/310 (60%), Positives = 236/310 (76%), Gaps = 2/310 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSVSLKDF +++ V + IQ+  + I PLL +LR++++E V LQ++ +++ VK PV 
Sbjct: 533  FSEGFSVSLKDFSISQAVKQSIQESFKVISPLLCNLRSTYNELVELQVENHIQDVKTPVL 592

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
            +FI  SSA+G+LIDSKS+ A++K+VQQIGFLG+Q+SD+GK YS+TLV+D++S FQ KYP+
Sbjct: 593  EFILTSSALGYLIDSKSDGAVAKLVQQIGFLGLQVSDRGKLYSKTLVEDLASHFQSKYPT 652

Query: 573  -YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
               + P  ++GL+    F GL+ Y+EM H            RGL+EPGTLFKNLMAILRD
Sbjct: 653  NLLNYPSAQYGLIQSSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAILRD 712

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNT-ANIASEFCAGDPVGVLAATAMSNPAYKAVLDXX 220
            VVICYDGTVRN+CSNSI+Q EYGV   A   S F AG+PVGVLAATAMSNPAYKAVLD  
Sbjct: 713  VVICYDGTVRNVCSNSIIQSEYGVKVGAESQSLFPAGEPVGVLAATAMSNPAYKAVLDST 772

Query: 219  XXXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISL 40
                 SWDMMKEILLC VGFKND ADRRV+LY N C CGR+HCQE AA  VKNHL+++SL
Sbjct: 773  PSSNSSWDMMKEILLCKVGFKNDQADRRVILYFNYCGCGREHCQEKAAFLVKNHLEKVSL 832

Query: 39   KEAAIEFLIE 10
            K+ A  F+IE
Sbjct: 833  KDVAKCFMIE 842


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 991

 Score =  350 bits (899), Expect = 3e-94
 Identities = 179/312 (57%), Positives = 231/312 (74%), Gaps = 1/312 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            + EGFSV L+DF+++R  +   +++ + I  LL  LR++++E +ALQL+ ++R  K+PVA
Sbjct: 616  FSEGFSVGLEDFYISRAAIGGTRRDFKVISSLLSQLRSTYNELMALQLENHIRRAKLPVA 675

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMKYPS 574
             FI   S+IG LID KS+SA++KVVQQIGFLG+QISD+GKFY++TLV+DM+  F+ KYPS
Sbjct: 676  DFIVRLSSIGDLIDYKSDSAMTKVVQQIGFLGLQISDRGKFYTKTLVEDMALHFESKYPS 735

Query: 573  YDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRDV 394
              D P  + GL+    F GL+PY+EMVH            RGL+EPGTLFKNLMAILRDV
Sbjct: 736  DIDYPSAKHGLIQSCFFHGLDPYEEMVHSISAREVMVRSTRGLSEPGTLFKNLMAILRDV 795

Query: 393  VICYDGTVRNMCSNSIVQFEYGVNTA-NIASEFCAGDPVGVLAATAMSNPAYKAVLDXXX 217
            VICYDGTVRN+CSNSI+QFEYG+       S F AG+PVGVLAATAMSNPAYKAVLD   
Sbjct: 796  VICYDGTVRNVCSNSIIQFEYGMKAGIKAQSLFPAGEPVGVLAATAMSNPAYKAVLDSTP 855

Query: 216  XXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISLK 37
                SW++MKEIL C V FKND  DRRV+LY N C CG+ +CQE  A +VKNHL+++ LK
Sbjct: 856  SSNSSWELMKEILQCRVNFKNDITDRRVILYFNYCGCGKFYCQERLAYSVKNHLEKVILK 915

Query: 36   EAAIEFLIEYRS 1
            + A+ F+ EY+S
Sbjct: 916  DIALCFMCEYKS 927


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  343 bits (879), Expect = 7e-92
 Identities = 174/312 (55%), Positives = 228/312 (73%), Gaps = 2/312 (0%)
 Frame = -1

Query: 933  YREGFSVSLKDFFLTRDVLEDIQKEIQKIFPLLHHLRASFSESVALQLDTYLRSVKIPVA 754
            +  GFSV L+DF ++R V   I + I K+ PLL  LR  + E VA QL+  ++ +++PV 
Sbjct: 699  FAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRGMYKELVAQQLEKVIQDIELPVI 758

Query: 753  KFIRDSSAIGHLIDSKSESALSKVVQQIGFLGIQISDKGKFYSETLVKDMSSLFQMK-YP 577
             F   S+ +G LIDSKS+SA+ KV+QQIGFLG Q+ ++GKFYS+ LV+D++S FQ+K + 
Sbjct: 759  NFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVASHFQLKCFY 818

Query: 576  SYDDSPYEEFGLVGRPLFRGLNPYQEMVHXXXXXXXXXXXXRGLTEPGTLFKNLMAILRD 397
              DD P  EFGL+    F GL+PY+E+VH            RGL+EPGTLFKNLMAILRD
Sbjct: 819  DKDDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRD 878

Query: 396  VVICYDGTVRNMCSNSIVQFEYGVNTANIASE-FCAGDPVGVLAATAMSNPAYKAVLDXX 220
            VVICYDGTVRN+CSNSI+QFEYG+ + + A   F AG+PVGVLAAT+MSNPAYKAVLD  
Sbjct: 879  VVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAYKAVLDAS 938

Query: 219  XXXXXSWDMMKEILLCGVGFKNDTADRRVLLYLNGCDCGRKHCQETAALAVKNHLKRISL 40
                 SW  MKEILLC V F+N+  DRRV+LYLN CDCGR +C+E AA  V+N L+++SL
Sbjct: 939  PSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLRKVSL 998

Query: 39   KEAAIEFLIEYR 4
            K+AA++F++EY+
Sbjct: 999  KDAALDFIVEYQ 1010