BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00038834
         (895 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus...   434   e-119
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   350   3e-94
ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   343   4e-92
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   342   9e-92
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   340   6e-91
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   337   5e-90
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           335   2e-89
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   335   2e-89
ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [...   328   1e-87
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   326   9e-87
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   322   2e-85
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   317   3e-84
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   315   2e-83
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...   315   2e-83
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   312   1e-82
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   310   4e-82
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   307   3e-81
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   303   6e-80
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   295   1e-77
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   295   2e-77

>gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus guttatus]
          Length = 457

 Score =  434 bits (1115), Expect = e-119
 Identities = 221/303 (72%), Positives = 253/303 (83%), Gaps = 6/303 (1%)
 Frame = -3

Query: 893 AAATNSENNEKEKNI-QWLILPPFTPTADGCSIGKKLYGRPEETSATTVLKWILKCCPHL 717
           A A  +EN EKEKN  QWL LPPF P ADGCSIGK+L G+P +   TT LKWILKCCPH+
Sbjct: 30  ATAATAENCEKEKNYDQWLTLPPFNPNADGCSIGKRLSGQPADAK-TTALKWILKCCPHI 88

Query: 716 PRSLVQKLFRLRQV-----RKECSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHP 552
           PR LVQKLFRLRQV     RKE S+ E  EQRP+R+GAKDLM IGDRI+LPKSVD  S  
Sbjct: 89  PRCLVQKLFRLRQVHFLLIRKESSNMEDKEQRPKRIGAKDLMDIGDRIFLPKSVDGTSPS 148

Query: 551 TTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYD 372
           TTA++++F  E++ +FV+SLELYKD AIIVINKPPG+PVQGG+GI+RSLDELAAKYL++D
Sbjct: 149 TTAESRNFFDEKEMEFVRSLELYKDPAIIVINKPPGLPVQGGIGIKRSLDELAAKYLKFD 208

Query: 371 HMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRYLAL 192
             E PRLVHRLDRDSSGILVMGRTQLSTT+LHSVFREKT GA N+V G K ILQK+Y AL
Sbjct: 209 FTESPRLVHRLDRDSSGILVMGRTQLSTTILHSVFREKTFGASNNVCGNKKILQKKYWAL 268

Query: 191 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 12
           VIGSPRRR+G ISVPL+KVV D+GKSERITVA+ +NTL  QHAVT+YRVIASS  GY+WL
Sbjct: 269 VIGSPRRREGLISVPLVKVVLDNGKSERITVAENNNTLSAQHAVTEYRVIASSSRGYSWL 328

Query: 11  ELS 3
           ELS
Sbjct: 329 ELS 331


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 476

 Score =  350 bits (899), Expect = 3e-94
 Identities = 182/302 (60%), Positives = 225/302 (74%), Gaps = 9/302 (2%)
 Frame = -3

Query: 884 TNSENNEKEKNIQWLILPPFTPTADGCSIGKKL--------YGRPEETSATTVLKWILKC 729
           T  E+ +K  N +W  LPPFT T +G ++G++L        Y +P   +ATT LKW+ +C
Sbjct: 40  TVHEDKQKRGN-KWFTLPPFTDTVNGAALGRELSRSVGRDVYAKPSAAAATTALKWVTRC 98

Query: 728 CPHLPRSLVQKLFRLRQVRKECSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPT 549
           CP +PR+LVQKLFRLRQVR+E S  + + Q  +RVG KD M +GDRI LP SV E   P 
Sbjct: 99  CPEIPRNLVQKLFRLRQVRREASDMDQSVQPLKRVGTKDSMNLGDRICLPISVKE--FPD 156

Query: 548 TADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDH 369
               +   SEE+ +F++SL LYKD AIIVINKPPG+PVQGG+GI+RSLDELAA  L YD 
Sbjct: 157 HKQKEGHCSEEEAEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDELAATCLSYDL 216

Query: 368 MEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVL-GGKNILQKRYLAL 192
            +PPRLVHRLDRD SGILVMGRTQ S TVLHSVFREKT GA +DV+   K+ILQ+RYLAL
Sbjct: 217 SQPPRLVHRLDRDCSGILVMGRTQTSATVLHSVFREKTFGASDDVIKHAKSILQRRYLAL 276

Query: 191 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 12
           VIGSPR+++G ISVPL KVV D+GKS+RIT+ +K+  LP QHA+T Y+VI SS  G+TWL
Sbjct: 277 VIGSPRQQEGLISVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKVIGSSCPGFTWL 336

Query: 11  EL 6
           EL
Sbjct: 337 EL 338


>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395210|gb|EMJ01009.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  343 bits (881), Expect = 4e-92
 Identities = 190/323 (58%), Positives = 227/323 (70%), Gaps = 27/323 (8%)
 Frame = -3

Query: 890  AATNSENNEKEKNIQ-WLILPPFTPTADGCSIGKKL-----YGRPEET---------SAT 756
            A T + + ++EK  + W  LPPFT T +G ++GK+L     YGR   T         + T
Sbjct: 34   ATTETFHEDREKRGEKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTT 93

Query: 755  TVLKWILKCCPHLPRSLVQKLFRLRQVRKE-----CSS--AETNEQRPRRVGAKDLMGIG 597
            T LKW+ +CCP LPRSLVQKLFRLRQVR+E     CS    E  E+  +RV AKD M +G
Sbjct: 94   TALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVG 153

Query: 596  DRIYLPKSVDE----RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQG 429
            DRI+LP SV E    +        + + SEE+  F++SLELYKD AIIVINKPPGMPVQG
Sbjct: 154  DRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQG 213

Query: 428  GVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIG 249
            G+GI+RSLDELAA  L YD  EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT G
Sbjct: 214  GIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFG 273

Query: 248  AFNDVL-GGKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPG 72
            A ND +   K ILQ+RY ALVIGSPR+R+G IS PL KVV D+GKS+RIT+ + S TLP 
Sbjct: 274  ASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPS 333

Query: 71   QHAVTDYRVIASSPSGYTWLELS 3
            QHA+T Y+VI S   GYTWLEL+
Sbjct: 334  QHAITKYKVIGSPCPGYTWLELT 356


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  342 bits (878), Expect = 9e-92
 Identities = 182/303 (60%), Positives = 219/303 (72%), Gaps = 16/303 (5%)
 Frame = -3

Query: 863 KEKNIQWLILPPFTPTADGCSIGKKLYGRPEETS--------ATTVLKWILKCCPHLPRS 708
           K K  +W  LP FTP  D  S+GK L G   + +        +TT LKW+++CCP LPRS
Sbjct: 50  KSKKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRS 109

Query: 707 LVQKLFRLRQVRKECSSAETN-------EQRPRRVGAKDLMGIGDRIYLPKSVDERSHPT 549
           LVQKLFRLRQVR+E  +  T+       E R +RV AKDLM +GD+I LP +V+E     
Sbjct: 110 LVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEFP--- 166

Query: 548 TADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDH 369
           +  ++   ++E+  FV +LELYKD AIIV+NKPPG+PVQGG+GI+RSLDELAA YLRYD 
Sbjct: 167 SEKHEYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDC 226

Query: 368 MEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAF-NDVLGGKNILQKRYLAL 192
            EPPRLVHRLDRDSSGIL+MGRTQ S T+LHS+FREKT GA  ND+   K ILQ+RY AL
Sbjct: 227 SEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWAL 286

Query: 191 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 12
           VIGSPRR +G IS PL KVV DDGKSERIT+ D   T+  QHA+T+YRVI SS  GYTWL
Sbjct: 287 VIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWL 346

Query: 11  ELS 3
           ELS
Sbjct: 347 ELS 349


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Solanum tuberosum]
          Length = 467

 Score =  340 bits (871), Expect = 6e-91
 Identities = 179/303 (59%), Positives = 220/303 (72%), Gaps = 6/303 (1%)
 Frame = -3

Query: 893 AAATNSENNEKEKNIQWLILPPFTPTADGCSIGKKLYG-----RPEETSATTVLKWILKC 729
           A   N   NEK K   WL LPPFT T +G ++G++L G     +   T+  T LKW+ +C
Sbjct: 45  AQVCNRNENEKAK---WLTLPPFTATVNGAALGRELAGVKMDVKENSTNTMTALKWVQRC 101

Query: 728 CPHLPRSLVQKLFRLRQVRKECSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPT 549
           CP LP+SLVQKLFRLRQVR++ S+ E  EQRP+RV AK+ M +GDRI+LP +V +   P+
Sbjct: 102 CPELPKSLVQKLFRLRQVRRDSSNVE--EQRPKRVSAKESMNVGDRIFLPITVQK--FPS 157

Query: 548 TADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDH 369
                  SSEE+RKFV SLELYKD  I+V+NKPPGMPVQGG+GI+RSLDELAAKY+R+++
Sbjct: 158 EKVVYYPSSEEERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEY 217

Query: 368 MEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQKRYLAL 192
            E PRLVHRLDRD SG+LVMGRTQLS + LHS+FREKT  + N D+   K ILQK+Y AL
Sbjct: 218 SEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWAL 277

Query: 191 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 12
           VIG PRR  G IS PL K+V D+GKSERIT+         Q+AVT+YR+I SS  GYTWL
Sbjct: 278 VIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWL 337

Query: 11  ELS 3
           ELS
Sbjct: 338 ELS 340


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
           gi|462395209|gb|EMJ01008.1| hypothetical protein
           PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  337 bits (863), Expect = 5e-90
 Identities = 189/323 (58%), Positives = 226/323 (69%), Gaps = 27/323 (8%)
 Frame = -3

Query: 890 AATNSENNEKEKNIQ-WLILPPFTPTADGCSIGKKL-----YGRPEET---------SAT 756
           A T + + ++EK  + W  LPPFT T +G ++GK+L     YGR   T         + T
Sbjct: 34  ATTETFHEDREKRGEKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTT 93

Query: 755 TVLKWILKCCPHLPRSLVQKLFRLRQVRKE-----CSS--AETNEQRPRRVGAKDLMGIG 597
           T LKW+ +CCP LPRSLVQKLFRLRQVR+E     CS    E  E+  +RV AKD M +G
Sbjct: 94  TALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECSGEGVEALERPLKRVAAKDSMNVG 153

Query: 596 DRIYLPKSVDE----RSHPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQG 429
           DRI+LP SV E    +        + + SEE+  F++SLELYKD AIIVINKPPGMPVQG
Sbjct: 154 DRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQG 213

Query: 428 GVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIG 249
           G+GI+RSLDELAA  L YD  EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT G
Sbjct: 214 GIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFG 273

Query: 248 AFNDVL-GGKNILQKRYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPG 72
           A ND +   K ILQ+RY ALVIGSPR+R+G IS PL KVV D+GKS+RIT+ + S TLP 
Sbjct: 274 ASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPS 333

Query: 71  QHAVTDYRVIASSPSGYTWLELS 3
           QHA+T Y+VI S    YTWLEL+
Sbjct: 334 QHAITKYKVIGS--PCYTWLELT 354


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  335 bits (858), Expect = 2e-89
 Identities = 177/304 (58%), Positives = 216/304 (71%), Gaps = 18/304 (5%)
 Frame = -3

Query: 860 EKN-IQWLILPPFTPTADGCSIGKKLYGRPEE---------TSATTVLKWILKCCPHLPR 711
           EKN  +W  LPP T T DG  +GK + G  ++         ++ATT LKW+++CCP LPR
Sbjct: 43  EKNGTKWFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPR 102

Query: 710 SLVQKLFRLRQVRKECSSAET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERSHP 552
           SLVQKLFRLRQVR+E  + E         + R RRV AKD + +GD+I+LP SV E    
Sbjct: 103 SLVQKLFRLRQVRRESFNVEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISVKELP-- 160

Query: 551 TTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYD 372
                + F +EE+ KF++SLELYKD AI+V+NKPPG+PVQGG+GI+ SLD+LA   L YD
Sbjct: 161 -VEKKECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLSYD 219

Query: 371 HMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFND-VLGGKNILQKRYLA 195
           + EPPRLVHRLDRD SGILVMGRTQ S TVLHS+FREKT GA ND  + GK +LQ+RY A
Sbjct: 220 YTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWA 279

Query: 194 LVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTW 15
            VIGSPR   G IS PL KVV D+GKS+RITV + S+TL  QHA+T Y+VI SS  GYTW
Sbjct: 280 FVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGYTW 339

Query: 14  LELS 3
           LELS
Sbjct: 340 LELS 343


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
           lycopersicum]
          Length = 467

 Score =  335 bits (858), Expect = 2e-89
 Identities = 178/303 (58%), Positives = 217/303 (71%), Gaps = 6/303 (1%)
 Frame = -3

Query: 893 AAATNSENNEKEKNIQWLILPPFTPTADGCSIGKKLYG-----RPEETSATTVLKWILKC 729
           A   N   NEK K   WL LPPFT   +G ++G++L G         T+  T LKW+ +C
Sbjct: 45  AQVCNRNENEKAK---WLTLPPFTAAVNGAALGRELAGVKMDVNENSTNTMTALKWVQRC 101

Query: 728 CPHLPRSLVQKLFRLRQVRKECSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPT 549
           CP LP+SLVQKLFRLRQVR++ S+ E  EQRP+RV AK+ M +GDRI+LP +V +   P+
Sbjct: 102 CPELPKSLVQKLFRLRQVRRDSSNVE--EQRPKRVSAKESMNVGDRIFLPITVQK--FPS 157

Query: 548 TADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDH 369
                  SSEE+RKFV SLELYKD+ IIV+NKPPGMPVQGG+GI+RSLDELAAKY+ + +
Sbjct: 158 EKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYMSHQY 217

Query: 368 MEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFN-DVLGGKNILQKRYLAL 192
            E PRLVHRLDRD SG+LVMGRTQLS + LHS+FREKT  + N D+   K ILQK+Y AL
Sbjct: 218 SEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWAL 277

Query: 191 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 12
           VIG PRR  G IS PL K+V D+GKSERIT+         Q+AVT+YR+I SS  GYTWL
Sbjct: 278 VIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEKGYTWL 337

Query: 11  ELS 3
           ELS
Sbjct: 338 ELS 340


>ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
           gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine
           synthase, putative [Theobroma cacao]
          Length = 477

 Score =  328 bits (842), Expect = 1e-87
 Identities = 176/300 (58%), Positives = 215/300 (71%), Gaps = 10/300 (3%)
 Frame = -3

Query: 872 NNEKEKNIQWLILPPFTPTADGCSIGKKLYGRPEETSA--TTVLKWILKCCPHLPRSLVQ 699
           N+EK+K  +W  LPPFT T +   +G KL G+P   +A  TT +KW+++CCP LPRSLVQ
Sbjct: 54  NSEKKKKNKWFTLPPFTKTVNASVLGAKLSGKPHSKAANETTAVKWVMRCCPELPRSLVQ 113

Query: 698 KLFRLRQVRKEC-------SSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTAD 540
           KLFRLRQVR+E           +    + +RVGAKD + IGDRI+LP SV E        
Sbjct: 114 KLFRLRQVRRESHVLEVAGDGCQVQTVQLKRVGAKDALNIGDRIFLPFSVREFREEK--- 170

Query: 539 NQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEP 360
            +S  +EE+  F++ LELYKD AIIV+NKPPGMPVQGG+GI+ SLD+LAA  L +D+ EP
Sbjct: 171 QESGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEP 230

Query: 359 PRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAF-NDVLGGKNILQKRYLALVIG 183
           PRLVHRLDRDSSGILVMGRTQ+S T+LHSVFRE+T  A  +DV   K ILQKRY ALVIG
Sbjct: 231 PRLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVIG 290

Query: 182 SPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELS 3
           SPRR +G I  PL KVV DDGKS+RITV D S  +  Q A T+Y+VI ++  GYTWLELS
Sbjct: 291 SPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELS 350


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
           gi|550331407|gb|EEE87831.2| hypothetical protein
           POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  326 bits (835), Expect = 9e-87
 Identities = 180/306 (58%), Positives = 218/306 (71%), Gaps = 12/306 (3%)
 Frame = -3

Query: 884 TNSENN-EKEKNIQWLILPPFTPTADGCSIGKKLYGR--PEETSATTVLKWILKCCPHLP 714
           T S+N+ E +K  +W  LPP+T T +G  +G  L  R   +  S TT LKW+L+CCP LP
Sbjct: 44  TKSQNHYENDKRGKWFTLPPYTSTINGSVLGIALSARIPAKSASETTALKWVLRCCPELP 103

Query: 713 RSLVQKLFRLRQVRKECSSAET-------NEQRPRRVGAKDLMGIGDRIYLPKSVDERSH 555
           R+LVQKLFRLRQVR+E    E+        E R +RV AKD M +GDRI+LP SV     
Sbjct: 104 RNLVQKLFRLRQVRRESPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKV--- 160

Query: 554 PTTADNQS-FSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 378
              A+ Q    +EE+  F++ LELYKD+AIIV+NKPPGMPVQGG+GI+RSLDEL+A    
Sbjct: 161 -LPAEKQDCHCNEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFS 219

Query: 377 YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGK-NILQKRY 201
            D+ EPPRLVHRLDRD SGILVMGRTQ S TVLH++FREKT+ A ND +G K  ILQ++Y
Sbjct: 220 SDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKY 279

Query: 200 LALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGY 21
            ALVIGSPRR +G IS PL KVV D+GKS+RITV + S  L  QHAVT YRVI SS  G+
Sbjct: 280 WALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESS-HGF 338

Query: 20  TWLELS 3
           TWLELS
Sbjct: 339 TWLELS 344


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
           gi|482566291|gb|EOA30480.1| hypothetical protein
           CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  322 bits (824), Expect = 2e-85
 Identities = 173/295 (58%), Positives = 212/295 (71%), Gaps = 14/295 (4%)
 Frame = -3

Query: 848 QWLILPPFTPTADGCSIGKKLYGRPE------ETSATTVLKWILKCCPHLPRSLVQKLFR 687
           +WL LPPF+PT DG ++GK+L    +      ++S TT L+WIL+C P LPR+LVQKLFR
Sbjct: 54  KWLTLPPFSPTVDGTAVGKELASEGDSITGSTDSSTTTALRWILRCRPDLPRTLVQKLFR 113

Query: 686 LRQVRKE----CSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTADNQSFS-S 522
           LRQVR+E    C   E    + +RV AK+ + +GDRIYLP SVD  + P  A  +SF  S
Sbjct: 114 LRQVRREMSVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPPPAKKESFRCS 173

Query: 521 EEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHR 342
           EE+RKFV SL LYKD +IIV+NKP GM VQGG GI+ S+DELAA  L +D  E PRLVHR
Sbjct: 174 EEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFDKSESPRLVHR 233

Query: 341 LDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNI--LQKRYLALVIGSPRR 171
           LDRD SG+LV+ RTQ + TVLHS+FREKT GA     G  KNI  L+++Y+ALVIG PRR
Sbjct: 234 LDRDCSGLLVLARTQTAATVLHSIFREKTSGA--SAYGVKKNIKSLKRKYMALVIGCPRR 291

Query: 170 RQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLEL 6
           ++G IS PL KVV DDGKS+RITV D    +  QHA+T+YRVI SSP GYTWLEL
Sbjct: 292 QRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLEL 346


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  317 bits (813), Expect = 3e-84
 Identities = 172/297 (57%), Positives = 211/297 (71%), Gaps = 5/297 (1%)
 Frame = -3

Query: 878 SENNEKEKNIQWLILPPFTPTADGCSIGKKLYGRP--EETSATTVLKWILKCCPHLPRSL 705
           S+NN K    ++  LPP+T T  G ++GK L      + ++ TT LKW+L+CCP LPR+L
Sbjct: 118 SKNNTKNTG-KFFTLPPYTSTISGSALGKALSATATAKASTETTALKWVLRCCPELPRNL 176

Query: 704 VQKLFRLRQVRKECSSAETNEQ--RPRRVGAKDLMGIGDRIYLPKSVDERSHPTTADNQS 531
           VQKLFRLRQV++E  +    E   + +RV AKDLM +GDRI+LP SV           + 
Sbjct: 177 VQKLFRLRQVKRELLNVGDGEMEHKTKRVAAKDLMNVGDRIFLPISVQALPFEK---QKC 233

Query: 530 FSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRL 351
              E++  F++ LELYKD AIIV+NKPPGMPVQGG+GI+ S DELAA  L YD+ EPPRL
Sbjct: 234 HCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRL 293

Query: 350 VHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNILQKRYLALVIGSPR 174
           VHRLDRDSSGILVMGRTQ ST VLHSVFREKT  A N  +G  + ILQ++Y ALVIGSPR
Sbjct: 294 VHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPR 353

Query: 173 RRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELS 3
           R++G IS PL KVV DDGKS+RITV + + +   QHAVT YRV+ SS  GY WLELS
Sbjct: 354 RQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESS-HGYAWLELS 409


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
           gi|557524859|gb|ESR36165.1| hypothetical protein
           CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  315 bits (807), Expect = 2e-83
 Identities = 172/303 (56%), Positives = 215/303 (70%), Gaps = 10/303 (3%)
 Frame = -3

Query: 881 NSENNEKEKNIQWLILPPFTPTADGCSIGKKLYGRPEET--SATTVLKWILKCCPHLPRS 708
           ++ N + E+  +W  LPPFT T DG ++G++L   P ++  S TT LKW+L+CCP LPR+
Sbjct: 69  DNNNGDDERRGKWFTLPPFTSTIDGSALGRQL-ACPSKSPISETTALKWVLQCCPGLPRN 127

Query: 707 LVQKLFRLRQVRKECSSAETN-------EQRPRRVGAKDLMGIGDRIYLPKSVDERSHPT 549
            VQKLFRL QVR+E  S +++       E + +RV AKD + +GDRI+LP S+ E     
Sbjct: 128 FVQKLFRLSQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESP--- 184

Query: 548 TADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDH 369
           +   +   +EE+  F+QSLELYKDSAIIVINKP GMPVQGG+GIRRS+DELAA  L YD+
Sbjct: 185 SRKEKCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDY 244

Query: 368 MEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAF-NDVLGGKNILQKRYLAL 192
            EPPRLVHRLDRDSSGILVMGRTQ S TVLHS+FREKT  A   D    K ILQ+ Y AL
Sbjct: 245 SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL 304

Query: 191 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 12
           V+G+PR  +G IS PL KVV D+GKS+RITV +    +  QHAVT Y+VI  S  GYTWL
Sbjct: 305 VVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWL 364

Query: 11  ELS 3
           +LS
Sbjct: 365 KLS 367


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
           gi|557107647|gb|ESQ47954.1| hypothetical protein
           EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score =  315 bits (807), Expect = 2e-83
 Identities = 168/302 (55%), Positives = 212/302 (70%), Gaps = 11/302 (3%)
 Frame = -3

Query: 878 SENNEKEKNIQWLILPPFTPTADGCSIGKKLYGRPEETSA-----TTVLKWILKCCPHLP 714
           +++++ +   +WL LPPF+PT D  ++GK+L+   +   A     TT L+WIL+C P LP
Sbjct: 47  ADDDDDDPRGKWLTLPPFSPTIDAAAVGKELFSDGDSVKASSDGSTTALRWILRCRPDLP 106

Query: 713 RSLVQKLFRLRQVRKE----CSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTT 546
           R+LVQKLFRLRQVR+E    C   E    + +RV AK+ + +GDRIYLP SV+  + P  
Sbjct: 107 RTLVQKLFRLRQVRREMSLSCDGDELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPPPA 166

Query: 545 ADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHM 366
                  SEE+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA  L +   
Sbjct: 167 KKESFCCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFGKS 226

Query: 365 EPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLGGKNI--LQKRYLAL 192
           E PRLVHRLDRD SG+LV+GRTQ + TVLHS+FREKT GA +     KNI  L+++YLAL
Sbjct: 227 ESPRLVHRLDRDCSGLLVLGRTQTAATVLHSIFREKTSGA-SAYSVKKNIKSLKRKYLAL 285

Query: 191 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 12
           VIG PRR++G IS PL KVV DDGKS+RITV D    +  QHA+T+YRVI SSP GYTWL
Sbjct: 286 VIGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWL 345

Query: 11  EL 6
           EL
Sbjct: 346 EL 347


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 477

 Score =  312 bits (799), Expect = 1e-82
 Identities = 172/295 (58%), Positives = 211/295 (71%), Gaps = 15/295 (5%)
 Frame = -3

Query: 845 WLILPPFTPTADGCSIGKKLYGRPE------ETSATTVLKWILKCCPHLPRSLVQKLFRL 684
           WL LPPF+PT DG ++GK L    +      + S TT L+WIL+C P LPR+LVQKLFRL
Sbjct: 55  WLTLPPFSPTIDGTAVGKDLLSDGDSVKASTDNSKTTALRWILRCRPDLPRTLVQKLFRL 114

Query: 683 RQVRKECSSA----ETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTT-ADNQSFS-S 522
           RQVR++ S +    E    + +RV AK+ + +GDRIYLP SVD  + PT  A  +SF  S
Sbjct: 115 RQVRRQMSLSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPPTPPAKKESFQCS 174

Query: 521 EEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHR 342
           EE+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA  L +D  E PRLVHR
Sbjct: 175 EEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAATCLTFDKSESPRLVHR 234

Query: 341 LDRDSSGILVMGRTQLSTTVLHSVFREKTIGAFNDVLG-GKNI--LQKRYLALVIGSPRR 171
           LDRD SG+LV+ RTQ + TVLHS+FREKT GA     G  KNI  L+++Y+ALVIG PRR
Sbjct: 235 LDRDCSGLLVLARTQTAATVLHSIFREKTCGA--SAYGVKKNIKSLKRKYMALVIGCPRR 292

Query: 170 RQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLEL 6
           ++G IS PL KVV DDGKS+RITV D    +  QHA+T+Y+VI SSP GYTWLEL
Sbjct: 293 QKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIESSPHGYTWLEL 347


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudouridine synthase 4, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 4; AltName:
           Full=RNA-uridine isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  310 bits (795), Expect = 4e-82
 Identities = 169/294 (57%), Positives = 208/294 (70%), Gaps = 13/294 (4%)
 Frame = -3

Query: 848 QWLILPPFTPTADGCSIGKKLYGRPE------ETSATTVLKWILKCCPHLPRSLVQKLFR 687
           +WL LPPF+PT DG ++GK L    +      + S TT L+WIL+C P LPR+LVQKLFR
Sbjct: 54  KWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFR 113

Query: 686 LRQVRKECSSA----ETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTT-ADNQSFS- 525
           LRQVR+E S +    E    + +RV AK+ + +GDRIYLP SVD  +  T  A  +SF  
Sbjct: 114 LRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQC 173

Query: 524 SEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVH 345
           S+E+RKFV SL LYKD AIIV+NKP G+ VQGG GI+ S+DELAA  L++D  E PRLVH
Sbjct: 174 SDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVH 233

Query: 344 RLDRDSSGILVMGRTQLSTTVLHSVFREKTIGA-FNDVLGGKNILQKRYLALVIGSPRRR 168
           RLDRD SG+LV+ RTQ + TVLHS+FREKT GA    V      L+++Y+ALVIG P R+
Sbjct: 234 RLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQ 293

Query: 167 QGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLEL 6
           +G IS PL KVV DDGKSERITV D    +  QHA+T+YRVI SSP GYTWLEL
Sbjct: 294 RGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLEL 347


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  307 bits (787), Expect = 3e-81
 Identities = 167/307 (54%), Positives = 214/307 (69%), Gaps = 15/307 (4%)
 Frame = -3

Query: 881 NSENNEKEKNIQWLILPPFTPTADGCSIGKKLY---GRPE---ETSATTVLKWILKCCPH 720
           + + NEK  N +W  LPP+T T +G  +G ++    G+ E    T+A T LKW+++CCP 
Sbjct: 49  SQQKNEKGSN-RWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPE 107

Query: 719 LPRSLVQKLFRLRQVRKECSSAETNE------QRPRRVGAKDLMGIGDRIYLPKSVDERS 558
           LPRSLVQKLFRLR+VR+  S  E +E       + +RV AKD++ +GD+I+LP SV   S
Sbjct: 108 LPRSLVQKLFRLRKVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMSVQVFS 167

Query: 557 HPTTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLR 378
              T D   + ++E+  F+ SL L+KD AI+VINKPPG+PVQGG+G++RSLDELAA  L 
Sbjct: 168 TEKTRD---YCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLS 224

Query: 377 YDHMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGA---FNDVLGGKNILQK 207
           Y + EPPRLVHRLDRDSSGIL+MGRT  ST++LHSVFREKT  A    N V   K IL K
Sbjct: 225 YGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLK 284

Query: 206 RYLALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPS 27
           RY ALVIGSPRR +G I+ PL K+V DDG+SE+I V D +  +P Q A+T Y+VI  S  
Sbjct: 285 RYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHH 343

Query: 26  GYTWLEL 6
           GYTWLEL
Sbjct: 344 GYTWLEL 350


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 466

 Score =  303 bits (776), Expect = 6e-80
 Identities = 164/302 (54%), Positives = 211/302 (69%), Gaps = 10/302 (3%)
 Frame = -3

Query: 881 NSENNEKEKNIQWLILPPFTPTADGCSIGKKLY---GRPE---ETSATTVLKWILKCCPH 720
           + + NEK  N +W  LPP+T T +G  +G ++    G+ E    T+A T LKW+++CCP 
Sbjct: 49  SQQKNEKGSN-RWFTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPE 107

Query: 719 LPRSLVQKLFRLRQVRKECSSAETNEQRP-RRVGAKDLMGIGDRIYLPKSVDERSHPTTA 543
           LPRSLVQKLFRLR+V ++ +    N     +RV AKD++ +GD+I+LP SV   S   T 
Sbjct: 108 LPRSLVQKLFRLRKVPRQLNVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFSTEKTR 167

Query: 542 DNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHME 363
           D   + ++E+  F+ SL L+KD AI+VINKPPG+PVQGG+G++RSLDELAA  L Y + E
Sbjct: 168 D---YCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSE 224

Query: 362 PPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGA---FNDVLGGKNILQKRYLAL 192
           PPRLVHRLDRDSSGIL+MGRT  ST++LHSVFREKT  A    N V   K IL KRY AL
Sbjct: 225 PPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWAL 284

Query: 191 VIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWL 12
           VIGSPRR +G I+ PL K+V DDG+SE+I V D +  +P Q A+T Y+VI  S  GYTWL
Sbjct: 285 VIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWL 343

Query: 11  EL 6
           EL
Sbjct: 344 EL 345


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 427

 Score =  295 bits (756), Expect = 1e-77
 Identities = 153/282 (54%), Positives = 198/282 (70%)
 Frame = -3

Query: 848 QWLILPPFTPTADGCSIGKKLYGRPEETSATTVLKWILKCCPHLPRSLVQKLFRLRQVRK 669
           +WL LPP + ++       +L   P     TT LKW+++CCPHLPR+LV KLFRLRQVR 
Sbjct: 30  KWLTLPPVSASSSASVELNQLSSTP-----TTALKWVVRCCPHLPRALVHKLFRLRQVRI 84

Query: 668 ECSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHPTTADNQSFSSEEDRKFVQSLE 489
             ++    +Q  +RV AKD +  GDRI LP+SV  +  PT     S  + +   F+++L 
Sbjct: 85  HPATV-IQQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPT----HSHLTPQQINFIRTLV 139

Query: 488 LYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYDHMEPPRLVHRLDRDSSGILVM 309
           +YKD AI+V+NKPPGMPVQGG+ I+RSLD +AA  L Y + +PPRLVHRLDRD SGILVM
Sbjct: 140 IYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVM 199

Query: 308 GRTQLSTTVLHSVFREKTIGAFNDVLGGKNILQKRYLALVIGSPRRRQGSISVPLMKVVF 129
           GRT  STTVLHS+FREKT  A +D+   K ILQ+RY ALV+G PRR +G ++  L KVV 
Sbjct: 200 GRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVV 259

Query: 128 DDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYTWLELS 3
           D+G+S+RIT+ D S  +  QHA+T+YRVIASS  GYTWLEL+
Sbjct: 260 DNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELT 301


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
           gi|548850328|gb|ERN08832.1| hypothetical protein
           AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  295 bits (755), Expect = 2e-77
 Identities = 154/304 (50%), Positives = 211/304 (69%), Gaps = 10/304 (3%)
 Frame = -3

Query: 887 ATNSENNEKEKNIQWLILPPFTPTADGCSIGKKLYGRPEETSATTVLKWILKCCPHLPRS 708
           A+  E+ E  +  +W  LP F   +   SI      +  +  +TT LKW+L+CCP +PRS
Sbjct: 35  ASLEEDKEVRRQCKWFTLPSFPGASLSPSIST---AKTAKAPSTTALKWVLRCCPQVPRS 91

Query: 707 LVQKLFRLRQVRKE--------CSSAETNEQRPRRVGAKDLMGIGDRIYLPKSVDERSHP 552
           L+QKLFRLRQVRKE        C   +   Q+ +RV AKD +  GDRI+LP +V+     
Sbjct: 92  LIQKLFRLRQVRKESLNPAIASCLHKQAQYQQIKRVFAKDTLNSGDRIFLPITVNPA--- 148

Query: 551 TTADNQSFSSEEDRKFVQSLELYKDSAIIVINKPPGMPVQGGVGIRRSLDELAAKYLRYD 372
              ++    ++E+ ++++SLE+YKD+AI+V+NKPPG+PVQGG G++ SLD L A  L+YD
Sbjct: 149 VEVEDDYICNKEEMEYIRSLEVYKDAAIVVVNKPPGLPVQGGTGVKLSLDVLVASSLKYD 208

Query: 371 HMEPPRLVHRLDRDSSGILVMGRTQLSTTVLHSVFREKTIGA-FN-DVLGGKNILQKRYL 198
           + E PRLVHRLD+DSSGILVMGRTQ STT+LHS+FR+KT GA FN D+   K IL+++Y 
Sbjct: 209 YSEVPRLVHRLDQDSSGILVMGRTQESTTLLHSIFRDKTCGASFNVDIKNSKIILKRKYW 268

Query: 197 ALVIGSPRRRQGSISVPLMKVVFDDGKSERITVADKSNTLPGQHAVTDYRVIASSPSGYT 18
           ALVIG+P+  +G IS PL K++ DDGKSERITV++ S     +HA+T+YRV+ SS  G+T
Sbjct: 269 ALVIGNPQPSEGLISAPLSKLLLDDGKSERITVSEDSKNKSARHAITEYRVLRSSGHGFT 328

Query: 17  WLEL 6
           WLEL
Sbjct: 329 WLEL 332