BLASTX nr result

ID: Mentha26_contig00038064 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00038064
         (1006 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006295454.1| hypothetical protein CARUB_v10024557mg [Caps...    59   4e-06
ref|XP_006279310.1| hypothetical protein CARUB_v10012775mg, part...    58   5e-06

>ref|XP_006295454.1| hypothetical protein CARUB_v10024557mg [Capsella rubella]
            gi|482564162|gb|EOA28352.1| hypothetical protein
            CARUB_v10024557mg [Capsella rubella]
          Length = 863

 Score = 58.5 bits (140), Expect = 4e-06
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 20/193 (10%)
 Frame = +1

Query: 94   GWLNNFHVDALLNLVAYEFDIH---HRSRDWTVLDMRATNTLISKDFKVMEIEP------ 246
            GWL ++H+ A +++      ++   +       +D     TL++ DFK  ++ P      
Sbjct: 623  GWLKDYHISATMSMFRRRSMLNPCPYPKERIAFIDQDFLRTLVN-DFKQFDMAPKNFLFN 681

Query: 247  -----YVNGKLPS---VGRIPWELTQRLFGCGNVGQNHWVLFQVCFKRQEVEVYDSLG-- 396
                 +VNG  P+     ++ W     L+GC +V  NHWV   +   + ++ VYDS+   
Sbjct: 682  NSCLEHVNGTAPTETATKKVWWIDVDHLYGCLSVNGNHWVALLIDLLQGKINVYDSIPSM 741

Query: 397  ISKDEIVAYFEDLCRNIPKALRVHRVWENQQRGNSPAILLRDVWDVV-VHEGSPKQDNLF 573
            +S   +      L + IP  L V      + R NS     R + +V  V    P  +N  
Sbjct: 742  VSDSNMTLECLSLRQMIPALLNV--AIPEKHRKNS-----RQMLEVSRVKRNVPLNENPG 794

Query: 574  DCGILCLKVLECI 612
            DCG+  LK +EC+
Sbjct: 795  DCGMYSLKYIECL 807


>ref|XP_006279310.1| hypothetical protein CARUB_v10012775mg, partial [Capsella rubella]
           gi|482547997|gb|EOA12208.1| hypothetical protein
           CARUB_v10012775mg, partial [Capsella rubella]
          Length = 375

 Score = 58.2 bits (139), Expect = 5e-06
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 19/192 (9%)
 Frame = +1

Query: 94  GWLNNFHVDALLNLVAYEFDIH---HRSRDWTVLDMRATNTLISKDFKVMEIEP------ 246
           GWL + H+ A +++      ++   +       +D     TL++ DFK  ++ P      
Sbjct: 135 GWLKDHHISATMSMFRRRSMLNPCLYPKERIAFIDQDFLRTLVN-DFKQFDMAPKNFLFN 193

Query: 247 -----YVNGKLPS---VGRIPWELTQRLFGCGNVGQNHWVLFQVCFKRQEVEVYDSL--G 396
                +VNG  P+     ++ W     L+GC  V  NHWV   +   + ++ VYDS+   
Sbjct: 194 KSYLEHVNGTAPTETATKKVWWIDVDHLYGCLFVNGNHWVALHIDLPQGKINVYDSIPST 253

Query: 397 ISKDEIVAYFEDLCRNIPKALRVHRVWENQQRGNSPAILLRDVWDVVVHEGSPKQDNLFD 576
           +S   +      L R IP  L V    +++++      + R      V    P  +N  D
Sbjct: 254 VSDSNMALECLSLKRMIPALLNVAIPEKHRKKSRQMLEVRR------VKRNVPLNENHGD 307

Query: 577 CGILCLKVLECI 612
           CG+  LK +EC+
Sbjct: 308 CGMYSLKYIECL 319


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