BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00032844
         (2376 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU19354.1| hypothetical protein MIMGU_mgv1a000485mg [Mimulus...  1298   0.0  
gb|AAR08426.1| phytochrome A [Orobanche minor]                       1290   0.0  
ref|XP_006339917.1| PREDICTED: type A phytochrome [Solanum tuber...  1287   0.0  
gb|EYU35379.1| hypothetical protein MIMGU_mgv1a000476mg [Mimulus...  1284   0.0  
ref|NP_001275384.1| phytochrome A [Solanum tuberosum] gi|7657416...  1281   0.0  
ref|NP_001234490.1| alternative transcript type 3 [Solanum lycop...  1277   0.0  
sp|P33530.1|PHYA1_TOBAC RecName: Full=Phytochrome A1 gi|297478|e...  1274   0.0  
gb|ACC60969.1| phytochrome A [Vitis riparia]                         1273   0.0  
ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera] g...  1273   0.0  
sp|P30733.2|PHYA_SOLTU RecName: Full=Phytochrome A gi|7550158|gb...  1272   0.0  
gb|AGT50254.1| phytochrome A2 [Ipomoea batatas]                      1265   0.0  
gb|AGT50253.1| phytochrome A1 [Ipomoea batatas]                      1263   0.0  
gb|AGT50255.1| phytochrome A3 [Ipomoea batatas]                      1261   0.0  
ref|XP_007031301.1| Phytochrome A [Theobroma cacao] gi|508719906...  1256   0.0  
ref|XP_006423945.1| hypothetical protein CICLE_v10027712mg [Citr...  1233   0.0  
gb|EXB57569.1| Phytochrome type A [Morus notabilis]                  1227   0.0  
ref|XP_002512596.1| phytochrome A, putative [Ricinus communis] g...  1224   0.0  
ref|XP_002318913.1| phytochrome A family protein [Populus tricho...  1221   0.0  
gb|AEK26583.1| phytochrome A [Populus tremula]                       1218   0.0  
ref|XP_004302312.1| PREDICTED: phytochrome A-like [Fragaria vesc...  1216   0.0  

>gb|EYU19354.1| hypothetical protein MIMGU_mgv1a000485mg [Mimulus guttatus]
          Length = 1125

 Score = 1298 bits (3359), Expect = 0.0
 Identities = 637/792 (80%), Positives = 717/792 (90%), Gaps = 1/792 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEGSNSTHPDKRKRLW 181
            E+LP +LTLCGS+LRAPHSCHLQYMENM SIASLVMS+VVNEG EE  + +   KRKRLW
Sbjct: 306  EHLPFNLTLCGSTLRAPHSCHLQYMENMGSIASLVMSVVVNEGAEEEPSPSDSSKRKRLW 365

Query: 182  GLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDMLLR 361
            GLVVCH+TSPRFVPFPLRYACEFL QVFAIHVNKELELENQ+LEKNILRTQTLLCDMLLR
Sbjct: 366  GLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLLR 425

Query: 362  DAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTGLS 541
            DAPLGIVS+SPNVMDLVKCDGA LLYKNK++R+GMTP+DFQIRDIVSWLDEYHRDSTGLS
Sbjct: 426  DAPLGIVSRSPNVMDLVKCDGALLLYKNKRYRMGMTPTDFQIRDIVSWLDEYHRDSTGLS 485

Query: 542  TDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDDGR 721
            TDSLYDAGFPGALALGDAVCG+AAVKIT++DWLFWFRSHTA+E+RWGGAKHEP EKDDGR
Sbjct: 486  TDSLYDAGFPGALALGDAVCGVAAVKITERDWLFWFRSHTASEVRWGGAKHEPGEKDDGR 545

Query: 722  KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKLND 901
            KMHPRSSF AFLEVVKTRSLPWK+YEMDAIHSLQLILRN+FKEAD  DS  + IHTKLND
Sbjct: 546  KMHPRSSFNAFLEVVKTRSLPWKEYEMDAIHSLQLILRNAFKEADEKDSNTQEIHTKLND 605

Query: 902  LQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCHFL 1081
            ++IEGIQELEAVTSEMVRLIETASVPILAVD +G+VNGWN KIADLTGL V++AI  HFL
Sbjct: 606  MRIEGIQELEAVTSEMVRLIETASVPILAVDSNGLVNGWNQKIADLTGLRVEDAIERHFL 665

Query: 1082 SLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKENVV 1261
            +LVE+S AD V+  L LAL+G+EERN++FEIKTHG RSE GPI+LVVNACASRD+KENVV
Sbjct: 666  TLVEESCADTVNKTLALALQGKEERNIEFEIKTHGSRSECGPISLVVNACASRDVKENVV 725

Query: 1262 GVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTKVS 1441
            GVCFIAQDVTAQKSMMDKFTRIEG+YKAIVQNPNPLIPPIFGTDEFGWCSEWN +M K+S
Sbjct: 726  GVCFIAQDVTAQKSMMDKFTRIEGEYKAIVQNPNPLIPPIFGTDEFGWCSEWNPSMIKLS 785

Query: 1442 GWTRDDVMNKMLLGEVFGT-NRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSRS 1618
            GW R D+++KML+GEVFG  N+A C LKNQEA VNLGI LN+AVTGQD+EK+PFGFFSR+
Sbjct: 786  GWDRQDMIDKMLIGEVFGVHNKACCCLKNQEALVNLGIALNSAVTGQDSEKIPFGFFSRN 845

Query: 1619 GKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMRK 1798
            GKY+ECLL VSKKLD EGAV G+FCF            H+QRLSEQTA+K+ +VL+Y++K
Sbjct: 846  GKYIECLLSVSKKLDGEGAVTGLFCFLHLASQELQQAIHIQRLSEQTALKKSRVLAYIKK 905

Query: 1799 EVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLEM 1978
            E+ NP++GI F+RKMMEGT +DEEQK LL+ SLHCQ QLNKIL+DTDLDHIIEGYLDLEM
Sbjct: 906  EISNPVAGIKFTRKMMEGTELDEEQKKLLQISLHCQHQLNKILEDTDLDHIIEGYLDLEM 965

Query: 1979 VEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISVT 2158
             EFKLHDVLIASISQVM+KSN KGIMIVD LAPNLS+E  +GDS RLQQVLA FLL+SVT
Sbjct: 966  TEFKLHDVLIASISQVMMKSNEKGIMIVDKLAPNLSTELFFGDSARLQQVLATFLLVSVT 1025

Query: 2159 YTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGIS 2338
            YTPS GQL IAA+L K+SIG++++LGHLEFRITHSGGGV Q++LS+MFGD+ +A EEGI+
Sbjct: 1026 YTPSGGQLTIAATLAKNSIGQSVKLGHLEFRITHSGGGVAQELLSEMFGDEEEASEEGIN 1085

Query: 2339 LFISRKLVKLMN 2374
            LFISRKLVKLMN
Sbjct: 1086 LFISRKLVKLMN 1097


>gb|AAR08426.1| phytochrome A [Orobanche minor]
          Length = 1123

 Score = 1290 bits (3337), Expect = 0.0
 Identities = 629/792 (79%), Positives = 722/792 (91%), Gaps = 2/792 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEGSNSTH-PDKRKRL 178
            +NLP DLTLCGS+LRAPH CH QYMENMNSIASLVMS+VVNEGDE+G +S+  P KRKRL
Sbjct: 304  DNLPFDLTLCGSTLRAPHGCHSQYMENMNSIASLVMSVVVNEGDEDGPDSSSGPYKRKRL 363

Query: 179  WGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDMLL 358
            WGLVVCH+T PRF+PFPLRYACEFL QVF+IHVNKELELENQMLEKNILRTQTLLCD+LL
Sbjct: 364  WGLVVCHNTCPRFIPFPLRYACEFLVQVFSIHVNKELELENQMLEKNILRTQTLLCDLLL 423

Query: 359  RDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTGL 538
            RD PLGIVSQSPNVMDLVKCDGA LL+K  K+RLG+TP+DFQIRDIVSWLDEYH+DSTGL
Sbjct: 424  RDVPLGIVSQSPNVMDLVKCDGAILLHKRTKYRLGLTPTDFQIRDIVSWLDEYHQDSTGL 483

Query: 539  STDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDDG 718
            STDSLYDAGFPGALALG+A+CGMAAVKITD+DWLFWFRSHTAAEIRWGGAKHE + KDDG
Sbjct: 484  STDSLYDAGFPGALALGNALCGMAAVKITDEDWLFWFRSHTAAEIRWGGAKHELEAKDDG 543

Query: 719  RKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKLN 898
            RKMHPRSSF+AFLEVVKTRSLPWKDYEMD IHSLQLILRN++KE++  D  ++ IH +LN
Sbjct: 544  RKMHPRSSFRAFLEVVKTRSLPWKDYEMDGIHSLQLILRNAYKESEEKDLESREIHARLN 603

Query: 899  DLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCHF 1078
            +LQI+G++E+EAVTSEMVRLIETA+VPI +V VDG+VNGWNTKI+DLTGL V  AIG HF
Sbjct: 604  ELQIDGVKEIEAVTSEMVRLIETATVPIFSVGVDGLVNGWNTKISDLTGLSVVEAIGMHF 663

Query: 1079 LSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKENV 1258
            L+LVEDSSAD VS ML LAL+G+EE +VQFEIKTHG+RSESGPI+L+VNACAS+D+KENV
Sbjct: 664  LALVEDSSADTVSKMLGLALQGKEEHDVQFEIKTHGQRSESGPISLIVNACASKDVKENV 723

Query: 1259 VGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTKV 1438
            VGVCFIAQD+T QKSMMDKFTRIEGDY++I+QNPNPLIPPIFGTDEFGWCSEWNAAM K+
Sbjct: 724  VGVCFIAQDITTQKSMMDKFTRIEGDYRSIIQNPNPLIPPIFGTDEFGWCSEWNAAMIKL 783

Query: 1439 SGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSRS 1618
            SGW R+ V++KMLLGEVFG N+A CRLKNQEAYVNLG+VLNN VTGQ++ K+ FGFFSRS
Sbjct: 784  SGWGREAVIDKMLLGEVFGLNKACCRLKNQEAYVNLGVVLNNTVTGQESGKVSFGFFSRS 843

Query: 1619 GKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMRK 1798
            GKYV CLLCVSKK+D+EG+V G+FCF            H+QR+SEQTA KRL+VL+Y+R+
Sbjct: 844  GKYVACLLCVSKKVDSEGSVTGLFCFLQLASPELQQALHIQRISEQTASKRLRVLAYIRR 903

Query: 1799 EVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLEM 1978
            E+R+PLSGIIFSRK+MEGT++++EQKN++RTSLHCQ Q+NKIL+DTDLDHIIEGYLDLEM
Sbjct: 904  EIRSPLSGIIFSRKLMEGTDLNDEQKNIVRTSLHCQSQMNKILEDTDLDHIIEGYLDLEM 963

Query: 1979 VEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISVT 2158
            VEFKLH+VLIASISQV+ KSNGKGI IVD+LAPNLS+ETLYGDSLRLQQVLAAFLLI+V 
Sbjct: 964  VEFKLHEVLIASISQVISKSNGKGIKIVDNLAPNLSNETLYGDSLRLQQVLAAFLLIAVD 1023

Query: 2159 YTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDD-VDACEEGI 2335
             TPS GQLG+AA+L KDSIG+ +QLG LE RITH GGGVPQ++L+QMFGD+  DA E+GI
Sbjct: 1024 STPSGGQLGVAATLAKDSIGEFVQLGRLECRITH-GGGVPQEILNQMFGDEPTDASEDGI 1082

Query: 2336 SLFISRKLVKLM 2371
            SLFISRKLVKLM
Sbjct: 1083 SLFISRKLVKLM 1094


>ref|XP_006339917.1| PREDICTED: type A phytochrome [Solanum tuberosum]
          Length = 1123

 Score = 1287 bits (3331), Expect = 0.0
 Identities = 621/793 (78%), Positives = 714/793 (90%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E LP DLTLCGS+LRAPH CHLQYMENMNSIASLVM++VVN+GDEEG  S+S+   KRKR
Sbjct: 304  EKLPFDLTLCGSTLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELENQ LEKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIVSQSPN+MDL+KCDGAALLYKNK HRLGM PSDFQ+ DIVSWL EYH DSTG
Sbjct: 424  MRDAPLGIVSQSPNIMDLIKCDGAALLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAGFPGALALGDAVCGMAAV+I+DKDWLFW+RSHTAAE+RWGGAKHEP EKDD
Sbjct: 484  LSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEPGEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GRKMHPRSSFKAFLEVVKTRS+PWKDYEMDAIHSLQLILRN+FK+AD+ +S   +IHTKL
Sbjct: 544  GRKMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDADAVNSNTISIHTKL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            NDL+I+G+QELEAVT+EMVRLIETASVPI AVDVDG VNGWNTK+A+LTGLPVD AIG H
Sbjct: 604  NDLKIDGMQELEAVTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKH 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSS D V+ ML+LAL+G+EERNV+FEIKTHG   +S PI+L+VNACAS+D++++
Sbjct: 664  LLTLVEDSSVDTVNKMLELALQGKEERNVEFEIKTHGPSRDSSPISLIVNACASKDVRDS 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCFIAQD+T QKS+MDKFTRIEGDY+AI+QNP+PLIPPIFGTD+FGWCSEWN+AMTK
Sbjct: 724  VVGVCFIAQDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTK 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            ++GW RDDVM+KMLLGEVFGT  A CRLKNQEA+VN G++LNNA+TGQ++EK+PFGFF+R
Sbjct: 784  LTGWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGFFAR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
             GKYVECLLCVSK+LD EGAV G+FCF            HVQRLSEQTA+KRLKVL+Y+R
Sbjct: 844  YGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLAYIR 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            +++RNPLSGIIFSRKM+EGT++ EEQKN+L TS  CQRQL+KILDDTDLD IIEGYLDLE
Sbjct: 904  RQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLDKILDDTDLDSIIEGYLDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            M+EFKLH+VL+ASISQVM+KSNGK IMI +D+  +L +ETLYGDS RLQQVLA FLL+SV
Sbjct: 964  MLEFKLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
              TPS G+L I+  LTKD IG+++QL  LEFRI H+GGGVP+++LSQMFG + DA EEGI
Sbjct: 1024 NSTPSGGKLSISGKLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMFGSEADASEEGI 1083

Query: 2336 SLFISRKLVKLMN 2374
            SL +SRKLVKLMN
Sbjct: 1084 SLLVSRKLVKLMN 1096


>gb|EYU35379.1| hypothetical protein MIMGU_mgv1a000476mg [Mimulus guttatus]
          Length = 1129

 Score = 1284 bits (3322), Expect = 0.0
 Identities = 637/801 (79%), Positives = 725/801 (90%), Gaps = 10/801 (1%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEE-----GSNSTHPDK 166
            +NL  DLTLCGS+LRAPHSCHLQYMENMNSIASLVMS+VVNEG+EE      S+S++ +K
Sbjct: 307  KNLDFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVNEGEEEEAGPANSSSSNLEK 366

Query: 167  RKRLWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLC 346
            RKRLWGLVVCH+TSPRFVPFPLRYACEFL QVFAIHV+KELELENQ LEKNILRTQTLLC
Sbjct: 367  RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVSKELELENQNLEKNILRTQTLLC 426

Query: 347  DMLLRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRD 526
            D+LLRDAPLGIVSQSPNV DLVKCDGA LLYKNK ++LG+TP+DFQIRDIVSWLDEYHRD
Sbjct: 427  DLLLRDAPLGIVSQSPNVTDLVKCDGAVLLYKNKTYKLGLTPNDFQIRDIVSWLDEYHRD 486

Query: 527  STGLSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDE 706
            STGLSTDSLYDAGFPGAL+LGDA+CG AAV+IT++DWLFWFR+HTAAEIRWGGAKHE  E
Sbjct: 487  STGLSTDSLYDAGFPGALSLGDAICGTAAVRITERDWLFWFRAHTAAEIRWGGAKHEAGE 546

Query: 707  KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSF-KEADSTDSYAKAI 883
            KDDGRKMHPRSSF AFLEVVK+RSLPWKD+EMDAIHSLQLILRNSF KE    D     +
Sbjct: 547  KDDGRKMHPRSSFNAFLEVVKSRSLPWKDFEMDAIHSLQLILRNSFLKEGGEGD----LV 602

Query: 884  HTKLNDLQ-IEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDN 1060
             T+L+++Q IEG+QELEAVTSEMVRLIETA+VPILAVDVDG+VNGWN+KIA+LTGL V++
Sbjct: 603  RTRLSEMQMIEGVQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLGVES 662

Query: 1061 AIGCHFLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESG-PITLVVNACAS 1237
            AIG HFL LVEDSSA  VS ML+LA++G+EE+NVQFEIKTH + +ES  PITLVVNACAS
Sbjct: 663  AIGRHFLELVEDSSAGVVSRMLELAIQGKEEQNVQFEIKTHDQTTESAPPITLVVNACAS 722

Query: 1238 RDMKENVVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEW 1417
            +D+KEN+VGVCFIAQD+TAQK++MDKFTRI+GDYK+I+QNPNPLIPPIFG+DEFGWCSEW
Sbjct: 723  KDVKENIVGVCFIAQDITAQKTIMDKFTRIQGDYKSIIQNPNPLIPPIFGSDEFGWCSEW 782

Query: 1418 NAAMTKVSGWTRDDVMNKMLLGEVFGTNRAS-CRLKNQEAYVNLGIVLNNAVTGQDNEKL 1594
            N AMTK+SGW +DDV+NKML+GE+FGTN+++ CR+KNQEAYVNLGI LNNAVTGQ +EK+
Sbjct: 783  NPAMTKISGWRKDDVINKMLVGEIFGTNKSNYCRIKNQEAYVNLGIALNNAVTGQHSEKM 842

Query: 1595 PFGFFSRSGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRL 1774
            PFGF SR GKYVECLLCVSKK+D EG+V GVFCF            HVQRLSE+ A+KR 
Sbjct: 843  PFGFLSRGGKYVECLLCVSKKMDPEGSVTGVFCFLQLASPELQRALHVQRLSEENALKRS 902

Query: 1775 KVLSYMRKEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHII 1954
            +VL+Y+R+E+RNPLSGIIFSRKMMEGT++D+EQKNLLRTS HCQRQLNKILDDTDLDHII
Sbjct: 903  RVLAYIRREIRNPLSGIIFSRKMMEGTDLDDEQKNLLRTSGHCQRQLNKILDDTDLDHII 962

Query: 1955 EGYLDLEMVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLA 2134
            EGYLDLEMVEF LH+VLIASISQVM+KSNGKGI+I D+LAPNLS+ETLYGDSLRLQQVLA
Sbjct: 963  EGYLDLEMVEFNLHEVLIASISQVMMKSNGKGIVIADNLAPNLSNETLYGDSLRLQQVLA 1022

Query: 2135 AFLLISVTYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMF-GDD 2311
            AFLLISVT TPS G +G+AA LTKDSIG+++QLGHLE RITHSGGGV QQVL QMF GD+
Sbjct: 1023 AFLLISVTSTPSGGSVGVAAKLTKDSIGQSVQLGHLELRITHSGGGVAQQVLDQMFGGDE 1082

Query: 2312 VDACEEGISLFISRKLVKLMN 2374
             +A +EGISLFISRKLVKLMN
Sbjct: 1083 AEASDEGISLFISRKLVKLMN 1103


>ref|NP_001275384.1| phytochrome A [Solanum tuberosum] gi|76574169|gb|ABA46868.1|
            phytochrome A [Solanum tuberosum]
          Length = 1123

 Score = 1281 bits (3316), Expect = 0.0
 Identities = 618/793 (77%), Positives = 710/793 (89%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E LP DLTLCGS+LRAPH CHLQYMENMNS+ASLVM++VVN+GDEEG  S+S+   KRKR
Sbjct: 304  EKLPFDLTLCGSTLRAPHYCHLQYMENMNSVASLVMAVVVNDGDEEGESSDSSQSQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELENQ LEKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIVSQSPN+MDLVKCDGAALLYKNK HRLGM PSDFQ+ DIVSWL EYH DSTG
Sbjct: 424  MRDAPLGIVSQSPNIMDLVKCDGAALLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAGFPGALALGDAVCGMAAV+I+DKDWLFW+RSHTAAE+RWGGAKHEP EKDD
Sbjct: 484  LSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEPGEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GRKMHPRSSFKAFLEVVKTRS+PWKDYEMDAIHSLQLILRN+FK+AD+ +S   +IHTKL
Sbjct: 544  GRKMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDADAVNSNTNSIHTKL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            NDL+I+G+QELEAVT+EM+RLIETASVPI AVDVDG VNGWNTK+A+LTGLPVD AIG H
Sbjct: 604  NDLRIDGMQELEAVTAEMIRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKH 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSS D V+ ML+LAL+G+EERNV+FEIK HG   +S PI+L+VNACAS+D++++
Sbjct: 664  LLTLVEDSSVDTVNKMLELALQGKEERNVEFEIKAHGPSRDSSPISLIVNACASKDVRDS 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCFIAQD+T QKS+MDKFTRIEGDY+AI+QNP+PLIPPIFGTD+FGWCSEWN+AMTK
Sbjct: 724  VVGVCFIAQDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTK 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            ++GW RDDVM+KMLLGEVFGT  A CRLKNQEA+VN G++LNNA+TGQ++EK+PFGFF R
Sbjct: 784  LTGWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGFFGR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
             GKYVECLLCVSK+LD EGAV G+FCF            HVQRLSEQTA+KRLKVL+Y+R
Sbjct: 844  YGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLAYIR 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            ++++NPLSGIIFS KM+EGT++ EEQKN+L TS  CQRQLNKILDDTDLD IIEGYLDLE
Sbjct: 904  RQIKNPLSGIIFSWKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIEGYLDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            M+EFKLH+VL+ASISQVM+KSNGK IMI +D+  +L +ETLYGDS RLQQVLA FLL+SV
Sbjct: 964  MLEFKLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
              TPS GQL I+  LTKD IG+++QL  LEFRI H+GGGVP+++LSQM G +VDA EEGI
Sbjct: 1024 NSTPSGGQLSISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMLGSEVDASEEGI 1083

Query: 2336 SLFISRKLVKLMN 2374
             L +SRKLVKLMN
Sbjct: 1084 FLLVSRKLVKLMN 1096


>ref|NP_001234490.1| alternative transcript type 3 [Solanum lycopersicum]
            gi|3492795|emb|CAA05086.1| phyA [Solanum lycopersicum]
            gi|3492797|emb|CAA05087.1| phyA [Solanum lycopersicum]
            gi|3492799|emb|CAA05088.1| phyA [Solanum lycopersicum]
            gi|3492801|emb|CAA05089.1| phyA [Solanum lycopersicum]
          Length = 1123

 Score = 1277 bits (3305), Expect = 0.0
 Identities = 618/793 (77%), Positives = 710/793 (89%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E LP DLTLCGS+LRAPH CHLQYMENMNSIASLVM++VVN+GDEEG  S+S+   KRKR
Sbjct: 304  EKLPFDLTLCGSTLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELENQ LEKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIVSQSPN+MDLVKCDGAALLYKNK HRLGM PSDFQ++DIVSWL EYH DSTG
Sbjct: 424  MRDAPLGIVSQSPNIMDLVKCDGAALLYKNKIHRLGMNPSDFQLQDIVSWLCEYHTDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAGFPGALALGDAVCGMAAV+I+DKDWLFWFRSHTAAE+RWGGAKHEP EKDD
Sbjct: 484  LSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEPGEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GRKMHPRSSFKAFLEVVKTRS+PWKDYEMDAIHSLQLILRN+FK+A+  +S   +I+ KL
Sbjct: 544  GRKMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDAEVVNSNTNSIYKKL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            NDL+I+G+QELE+VT+EMVRLIETA VPILAVDVDG VNGWNTKIA+LTGLPVD AIG H
Sbjct: 604  NDLKIDGMQELESVTAEMVRLIETALVPILAVDVDGQVNGWNTKIAELTGLPVDEAIGKH 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSS D V+ ML+LAL+G+EE+NV+FEIKTHG   +S PI+L+VNACAS+D+++N
Sbjct: 664  LLTLVEDSSVDTVNKMLELALQGKEEKNVEFEIKTHGPSRDSSPISLIVNACASKDVRDN 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCF+A D+T QKS+MDKFTRIEGDY+AI+QNP+PLIPPIFGTD+FGWCSEWN AMTK
Sbjct: 724  VVGVCFMAHDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNTAMTK 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            ++GW RDDVM+KMLLGEVFGT  A CRLKNQEA+VN G+VLNNA+TGQ++EK+PFGFF+R
Sbjct: 784  LTGWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAITGQESEKIPFGFFAR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
             GKYVECLLCVSK+LD EGAV G+FCF            +VQRLSEQTA+KRLKVL+Y+R
Sbjct: 844  YGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALYVQRLSEQTALKRLKVLAYIR 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            +++RNPLSGIIFSRKM+EGT++ EEQKN+L TS  CQRQLNKILDDTDLD II+GYLDLE
Sbjct: 904  RQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYLDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            M+EFKLH+VL+ASISQVM+KSNGK IMI +D+  +L +ETLYGDS RLQQVLA FLL+SV
Sbjct: 964  MLEFKLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
              TPS GQL I+  LTKD IG+++QL  LEFRI H+GGGVP+++L QMFG + DA EEGI
Sbjct: 1024 NATPSGGQLSISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLGQMFGSEADASEEGI 1083

Query: 2336 SLFISRKLVKLMN 2374
            SL +SRKLVKLMN
Sbjct: 1084 SLLVSRKLVKLMN 1096


>sp|P33530.1|PHYA1_TOBAC RecName: Full=Phytochrome A1 gi|297478|emb|CAA47284.1| type-A
            phytochrome [Nicotiana tabacum]
          Length = 1124

 Score = 1274 bits (3296), Expect = 0.0
 Identities = 618/793 (77%), Positives = 710/793 (89%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E LP DLTLCGS+LRAPH CHLQYMENM+SIASLVM++VVN+GDEEG  S+ST   KRKR
Sbjct: 304  EKLPFDLTLCGSTLRAPHYCHLQYMENMSSIASLVMAVVVNDGDEEGESSDSTQSQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELE+Q+LEKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +R APLGIVSQSPN+MDLVKCDGAALLYKNK HRLGMTPSDFQ+ DIVSWL EYH DSTG
Sbjct: 424  MRVAPLGIVSQSPNIMDLVKCDGAALLYKNKIHRLGMTPSDFQLHDIVSWLSEYHTDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAGFPGALALGD VCGMAAV+I+DK WLFW+RSHTAAE+RWGGAKHEP EKDD
Sbjct: 484  LSTDSLYDAGFPGALALGDVVCGMAAVRISDKGWLFWYRSHTAAEVRWGGAKHEPGEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GRKMHPRSSFKAFLEVVKTRS+PWKDYEMDAIHSLQLILRN+ K+AD+ DS    IHTKL
Sbjct: 544  GRKMHPRSSFKAFLEVVKTRSVPWKDYEMDAIHSLQLILRNASKDADAMDSNTNIIHTKL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            NDL+I+G+QELEAVT+EMVRLIETASVPI AVDVDG +NGWNTKIA+LTGLPVD AIG H
Sbjct: 604  NDLKIDGLQELEAVTAEMVRLIETASVPIFAVDVDGQLNGWNTKIAELTGLPVDEAIGNH 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSS D VS ML+LAL+G+EERNV+FEIKTHG   +S PI+L+VNACASRD+ ++
Sbjct: 664  LLTLVEDSSVDTVSKMLELALQGKEERNVEFEIKTHGPSGDSSPISLIVNACASRDVGDS 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCFIAQD+T QK++MDKFTRIEGDY+AI+QNP+PLIPPIFGTD+FGWCSEWN+AMTK
Sbjct: 724  VVGVCFIAQDITGQKNIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTK 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            ++GW RDDV++KMLLGEVFGT  A CRLKNQEA+VN G+VLNNA+TGQ+  K+ FGFF+R
Sbjct: 784  LTGWRRDDVIDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAMTGQECAKISFGFFAR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
            +GKYVECLLCVSK+LD EGAV G+FCF            H+QRLSEQTA+KRLKVL+Y+R
Sbjct: 844  NGKYVECLLCVSKRLDREGAVTGLFCFLQLASHELQQALHIQRLSEQTALKRLKVLAYIR 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            +++RNPLSGIIFSRKM+EGTN+ EEQKN+LRTS  CQRQLNKILDDTDLD II+GYLDLE
Sbjct: 904  RQIRNPLSGIIFSRKMLEGTNLGEEQKNILRTSSQCQRQLNKILDDTDLDSIIDGYLDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            M+EFKLH+VL+ASISQ+M+KSNGK IMIV+D+  +L +ETLYGDS RLQQVLA FLL+ V
Sbjct: 964  MLEFKLHEVLVASISQIMMKSNGKNIMIVNDMVEDLLNETLYGDSPRLQQVLANFLLVCV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
              TPS GQL I+ +LTKD IG+++QL  LE RI+H+GGGVP+++LSQMFG + +A EEGI
Sbjct: 1024 NSTPSGGQLSISGTLTKDRIGESVQLALLEVRISHTGGGVPEELLSQMFGTEAEASEEGI 1083

Query: 2336 SLFISRKLVKLMN 2374
            SL ISRKLVKLMN
Sbjct: 1084 SLLISRKLVKLMN 1096


>gb|ACC60969.1| phytochrome A [Vitis riparia]
          Length = 1124

 Score = 1273 bits (3293), Expect = 0.0
 Identities = 624/793 (78%), Positives = 705/793 (88%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E LP DLTLCGS+LRAPHSCH+QYMENMNSIASLVM++VVN+GDEEG  SNS  P KRKR
Sbjct: 303  EKLPFDLTLCGSTLRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKR 362

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCHHT+PRFVPFPLRYACEFL QVFAIHVNKELELE+Q+LEKNILRTQTLLCDML
Sbjct: 363  LWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDML 422

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIVSQSPNVMDLVKCDGAALLYKNK  RLG+TPSDFQ+ DI SWL EYH DSTG
Sbjct: 423  MRDAPLGIVSQSPNVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTG 482

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAG+PGALALGDAVCGMAAVKIT KD LFWFRSHTAAE+RWGGAKHEP EKDD
Sbjct: 483  LSTDSLYDAGYPGALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDD 542

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+FK++++ D    AIHTKL
Sbjct: 543  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKL 602

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            NDL+IEG+QELEAVTSEMVRLIETASVPILAVDVDG+VNGWNTKI++LT LPVD AIG H
Sbjct: 603  NDLKIEGMQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMH 662

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSSAD V  ML LAL+G+EE+NVQFEIKTHG + +SGPI+LVVNACASRD+ EN
Sbjct: 663  LLTLVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLDEN 722

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCF+AQD+T+QK++MDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN AM K
Sbjct: 723  VVGVCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVK 782

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            +SGW R++VM+KMLLGEVFGT+ A CRLKN+EA+V LGIVLN+ +TG+++EK+ FGFFS+
Sbjct: 783  LSGWNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSK 842

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
            SGKYVECLL VSKKLD EGAV GVFCF            H+QRLSEQTA+KRLK L+Y++
Sbjct: 843  SGKYVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIK 902

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            ++++NPLSGIIFSRKMME T++ EEQ+ +L TS  CQRQL+KILDD DLD IIEGYLDLE
Sbjct: 903  RQIKNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLE 962

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            MVEF L +VL+ASISQVMIKSNGKGI IV+D    + +ETLYGD LRLQQVLA FLLISV
Sbjct: 963  MVEFTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISV 1022

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
             +TP  GQL +AASL KD +G+++ L HLE RITH+G GVP+Q+L+QMFG++ DA EEGI
Sbjct: 1023 NFTPGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGI 1082

Query: 2336 SLFISRKLVKLMN 2374
            SL ISRKLVKLMN
Sbjct: 1083 SLLISRKLVKLMN 1095


>ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera]
            gi|147838424|emb|CAN76586.1| hypothetical protein
            VITISV_020287 [Vitis vinifera]
            gi|183239014|gb|ACC60965.1| phytochrome A [Vitis
            vinifera] gi|296089871|emb|CBI39690.3| unnamed protein
            product [Vitis vinifera]
          Length = 1124

 Score = 1273 bits (3293), Expect = 0.0
 Identities = 624/793 (78%), Positives = 705/793 (88%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E LP DLTLCGS+LRAPHSCH+QYMENMNSIASLVM++VVN+GDEEG  SNS  P KRKR
Sbjct: 303  EKLPFDLTLCGSTLRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKR 362

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCHHT+PRFVPFPLRYACEFL QVFAIHVNKELELE+Q+LEKNILRTQTLLCDML
Sbjct: 363  LWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDML 422

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIVSQSPNVMDLVKCDGAALLYKNK  RLG+TPSDFQ+ DI SWL EYH DSTG
Sbjct: 423  MRDAPLGIVSQSPNVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTG 482

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAG+PGALALGDAVCGMAAVKIT KD LFWFRSHTAAE+RWGGAKHEP EKDD
Sbjct: 483  LSTDSLYDAGYPGALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDD 542

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+FK++++ D    AIHTKL
Sbjct: 543  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKL 602

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            NDL+IEG+QELEAVTSEMVRLIETASVPILAVDVDG+VNGWNTKI++LT LPVD AIG H
Sbjct: 603  NDLKIEGMQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMH 662

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSSAD V  ML LAL+G+EE+NVQFEIKTHG + +SGPI+LVVNACASRD+ EN
Sbjct: 663  LLTLVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLHEN 722

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCF+AQD+T+QK++MDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN AM K
Sbjct: 723  VVGVCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVK 782

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            +SGW R++VM+KMLLGEVFGT+ A CRLKN+EA+V LGIVLN+ +TG+++EK+ FGFFS+
Sbjct: 783  LSGWNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSK 842

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
            SGKYVECLL VSKKLD EGAV GVFCF            H+QRLSEQTA+KRLK L+Y++
Sbjct: 843  SGKYVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIK 902

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            ++++NPLSGIIFSRKMME T++ EEQ+ +L TS  CQRQL+KILDD DLD IIEGYLDLE
Sbjct: 903  RQIKNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLE 962

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            MVEF L +VL+ASISQVMIKSNGKGI IV+D    + +ETLYGD LRLQQVLA FLLISV
Sbjct: 963  MVEFTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISV 1022

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
             +TP  GQL +AASL KD +G+++ L HLE RITH+G GVP+Q+L+QMFG++ DA EEGI
Sbjct: 1023 NFTPGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGI 1082

Query: 2336 SLFISRKLVKLMN 2374
            SL ISRKLVKLMN
Sbjct: 1083 SLLISRKLVKLMN 1095


>sp|P30733.2|PHYA_SOLTU RecName: Full=Phytochrome A gi|7550158|gb|AAB21533.2| type A
            phytochrome [Solanum tuberosum]
          Length = 1123

 Score = 1272 bits (3292), Expect = 0.0
 Identities = 615/793 (77%), Positives = 708/793 (89%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E LP DLTLCGS+LRAPH CHLQYMENMNSIASLVM++VVN+GDEEG  S+S+   KRKR
Sbjct: 304  EKLPFDLTLCGSTLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVV H+T+PRF PFPLRYACEFL QVFAI VNKELELENQ LEKNILRTQTLLCDML
Sbjct: 364  LWGLVVSHNTTPRFAPFPLRYACEFLAQVFAILVNKELELENQFLEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIVSQSPN+MDL+KCDGAALLYKNK HRLGM PSDFQ+ DIVSWL EYH DSTG
Sbjct: 424  MRDAPLGIVSQSPNIMDLIKCDGAALLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAGFPGALALGDAVCGMAAV+I+DKDWLFW+RSHTAAE+RWGGAKHEP EKDD
Sbjct: 484  LSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEPGEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GRKMHPRSSFK FLEVVKTRS+PWKDYEMD IHSLQLILRN+FK+AD+ +S   +IHTKL
Sbjct: 544  GRKMHPRSSFKGFLEVVKTRSIPWKDYEMDRIHSLQLILRNAFKDADAVNSNTISIHTKL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            NDL+I+G+QELEAVT+EMVRLIETASVPI AVDVDG VNGWNTK+A+LTGLPVD AIG H
Sbjct: 604  NDLKIDGMQELEAVTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKH 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSS D V+ ML+LAL+G+EERNV+FEIKTHG   +S PI+L+VNACAS+D++++
Sbjct: 664  LLTLVEDSSVDTVNKMLELALQGQEERNVEFEIKTHGPSRDSSPISLIVNACASKDVRDS 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCFIAQD+T QKS+MDKFTRIEGDY+AI+QNP+PLIPPIFGTD+FGWCSEWN+AMT 
Sbjct: 724  VVGVCFIAQDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTM 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            ++GW RDDVM+KMLLGEVFGT  A CRLKNQEA+VN G++LNNA+TGQ++EK+PFGFF+R
Sbjct: 784  LTGWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGFFAR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
             GKYVECLLCVSK+LD EGAV G+FCF            HVQRLSEQTA+KRLKVL+Y+R
Sbjct: 844  YGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLAYIR 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            +++RNPLSGIIFSRKM+EGT++ EEQKN+L TS  CQRQL+KILDDTDLD IIEGYLDLE
Sbjct: 904  RQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLDKILDDTDLDSIIEGYLDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            M+EFKLH+VL+ASISQVM+KSNGK IMI +D+  +L +ETLYGDS RLQQVLA FLL+SV
Sbjct: 964  MLEFKLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
              TPS G+L I+  LTKD IG+++QL  LEFRI H+GGGVP+++LSQMFG + DA EEGI
Sbjct: 1024 NSTPSGGKLSISGKLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMFGSEADASEEGI 1083

Query: 2336 SLFISRKLVKLMN 2374
            SL +SRKLVKLMN
Sbjct: 1084 SLLVSRKLVKLMN 1096


>gb|AGT50254.1| phytochrome A2 [Ipomoea batatas]
          Length = 1127

 Score = 1265 bits (3273), Expect = 0.0
 Identities = 614/796 (77%), Positives = 716/796 (89%), Gaps = 5/796 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E L IDLTLCGS+LRAPHSCHLQYMENMNSIASLVM++VVN+GD+EG  S S    KRKR
Sbjct: 304  EKLSIDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDGDDEGEASESGRIQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGL+VCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELENQ++EKNILRTQTLLCDML
Sbjct: 364  LWGLIVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIVSQSPN+MDL+KCDGAALL+K+K HRLG+TP+DFQ+ DIVSWL EYH DSTG
Sbjct: 424  MRDAPLGIVSQSPNIMDLIKCDGAALLFKSKVHRLGITPTDFQLHDIVSWLSEYHMDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAGF GALALGDA+CGMA+V+I+DKDWLFWFRSHTAAE+RWGGAKHEPDEKDD
Sbjct: 484  LSTDSLYDAGFQGALALGDAICGMASVRISDKDWLFWFRSHTAAEVRWGGAKHEPDEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSF-KEADSTDSYAKA--IH 886
            GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+F KEAD+ D+ A A  IH
Sbjct: 544  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFGKEADTMDTKANANAIH 603

Query: 887  TKLNDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAI 1066
            +KLNDL+I+G+QELEAVTSEMVRLIETA+VPILAVDVDG+VNGWNTKIA+LTGL VD AI
Sbjct: 604  SKLNDLRIDGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLTVDEAI 663

Query: 1067 GCHFLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDM 1246
            G HFL+LVEDSS   V  ML LAL+G+EE+NVQFEIKTHG+RSESGPI+L+VNACASRD+
Sbjct: 664  GKHFLTLVEDSSVHNVRKMLSLALQGKEEKNVQFEIKTHGQRSESGPISLIVNACASRDV 723

Query: 1247 KENVVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAA 1426
            +E+VVGVCFIAQD+T QK++MDKFTRIEGDY+AI+QNPNPLIPPIFGTDEFGWCSEWN+A
Sbjct: 724  QESVVGVCFIAQDITGQKTIMDKFTRIEGDYRAIIQNPNPLIPPIFGTDEFGWCSEWNSA 783

Query: 1427 MTKVSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGF 1606
            MT +SGW RD+VM+KMLLGEVFGT +A CRLKNQEA+VNLG+VLNNA+TGQ +EK  FGF
Sbjct: 784  MTNLSGWCRDEVMDKMLLGEVFGTQKACCRLKNQEAFVNLGVVLNNAITGQVSEKTRFGF 843

Query: 1607 FSRSGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLS 1786
            F+R+GKYVECLL VSK+LD EGAV G+FCF            H Q+LSEQTAMKRLKVL+
Sbjct: 844  FARNGKYVECLLSVSKRLDREGAVTGLFCFLQLASQELQQALHFQKLSEQTAMKRLKVLA 903

Query: 1787 YMRKEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYL 1966
            Y+R++V+NPLSGI+FSRKM+EGT + ++QK++L TS  CQ+QL+K+LDDTDLD IIEGYL
Sbjct: 904  YIRRQVKNPLSGIMFSRKMLEGTELGKDQKSILHTSAQCQQQLSKVLDDTDLDCIIEGYL 963

Query: 1967 DLEMVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLL 2146
            DLEMVEFKL +VL ASISQVM KSNGK + I++D+A N+  ETLYGDSLRLQQ+L+ FL 
Sbjct: 964  DLEMVEFKLDEVLQASISQVMTKSNGKSLRIINDIADNILCETLYGDSLRLQQILSEFLS 1023

Query: 2147 ISVTYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACE 2326
            ++V +TPS GQL +++ LTKD+ G++IQL HLEFR+TH+GGGVP+++L+QMFG + DA E
Sbjct: 1024 VAVNFTPSGGQLALSSKLTKDNFGESIQLAHLEFRLTHTGGGVPEELLTQMFGSEADASE 1083

Query: 2327 EGISLFISRKLVKLMN 2374
            +GISL ISRKLVKLMN
Sbjct: 1084 DGISLLISRKLVKLMN 1099


>gb|AGT50253.1| phytochrome A1 [Ipomoea batatas]
          Length = 1127

 Score = 1263 bits (3268), Expect = 0.0
 Identities = 613/796 (77%), Positives = 717/796 (90%), Gaps = 5/796 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E L IDLTLCGS+LRAPHSCHLQYMENMNSIASLVM++VVN+GD+EG  S S    KRKR
Sbjct: 304  EKLSIDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDGDDEGEASESGRIQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELENQ++EKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGI+SQSPN+MDL+KCDGAALL+K+K HRLG+TP+DFQ++DIVSWL EYH DSTG
Sbjct: 424  MRDAPLGILSQSPNIMDLIKCDGAALLFKSKVHRLGITPTDFQLQDIVSWLSEYHMDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAGF GALALGDA+CGMA+V+I+DKDWLFWFRSHTAAE+RWGGAKHEPDEKDD
Sbjct: 484  LSTDSLYDAGFQGALALGDAICGMASVRISDKDWLFWFRSHTAAEVRWGGAKHEPDEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSF-KEADSTDSYAKA--IH 886
            GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+F KEAD+ D+ A A  IH
Sbjct: 544  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFGKEADTMDTKANANAIH 603

Query: 887  TKLNDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAI 1066
            +KLNDL+I+G+QELEAVTSEMVRLIETA+VPILAVDVDG+VNGWNTKIA+LTGL VD AI
Sbjct: 604  SKLNDLRIDGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLTVDEAI 663

Query: 1067 GCHFLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDM 1246
            G HFL+LVEDSS   V  ML LAL+G+EE+NVQFEIKTHG+RSESGPI+L+VNACASRD+
Sbjct: 664  GKHFLTLVEDSSVHNVRKMLSLALQGKEEKNVQFEIKTHGQRSESGPISLIVNACASRDV 723

Query: 1247 KENVVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAA 1426
            +E+VVGVC IAQD+T QK++MDKFTRIEGDY+AI+QNPNPLIPPIFGTDEFGWCSEWN+A
Sbjct: 724  QESVVGVCLIAQDITGQKTIMDKFTRIEGDYRAIIQNPNPLIPPIFGTDEFGWCSEWNSA 783

Query: 1427 MTKVSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGF 1606
            MT +SGW RD+VM+KMLLGEVFGT +A CRLKNQEA+VNLG+VLNNA+TGQ +EK  FGF
Sbjct: 784  MTNLSGWCRDEVMDKMLLGEVFGTQKACCRLKNQEAFVNLGVVLNNAITGQVSEKTRFGF 843

Query: 1607 FSRSGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLS 1786
            F+R+GKYVECLL VSK+LD EGAV G+FCF            H Q+LSEQTAMKRLKVL+
Sbjct: 844  FARNGKYVECLLSVSKRLDREGAVTGLFCFLQLASQELQQALHFQKLSEQTAMKRLKVLA 903

Query: 1787 YMRKEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYL 1966
            Y+R++V+NPLSGI+FSRKM+EGT + ++QK++L TS  CQ+QL+K+LDDTDLD IIEGYL
Sbjct: 904  YIRRQVKNPLSGIMFSRKMLEGTELGKDQKSILHTSAQCQQQLSKVLDDTDLDCIIEGYL 963

Query: 1967 DLEMVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLL 2146
            DLEMVEFKL +VL ASISQVM KSNGK + I++D+A N+  ETLYGDSLRLQQ+L+ FL 
Sbjct: 964  DLEMVEFKLDEVLQASISQVMTKSNGKSLRIINDIADNILCETLYGDSLRLQQILSEFLS 1023

Query: 2147 ISVTYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACE 2326
            ++V +TPS GQL +++ LTKD++G++IQL HLEFR+TH+GGGVP+++L+QMFG + DA E
Sbjct: 1024 VAVNFTPSGGQLALSSKLTKDNLGESIQLAHLEFRLTHTGGGVPEELLTQMFGSEADASE 1083

Query: 2327 EGISLFISRKLVKLMN 2374
            +GISL ISRKLVKLMN
Sbjct: 1084 DGISLLISRKLVKLMN 1099


>gb|AGT50255.1| phytochrome A3 [Ipomoea batatas]
          Length = 1127

 Score = 1261 bits (3262), Expect = 0.0
 Identities = 612/796 (76%), Positives = 715/796 (89%), Gaps = 5/796 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEG--SNSTHPDKRKR 175
            E L IDLTLCGS+LRAPHSCHLQYMENMNSIASLVM++VVN+GD+EG  S S    KRKR
Sbjct: 304  EKLSIDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDGDDEGEASESGRIQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGL+VCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELENQ++EKNILRTQTLLCDML
Sbjct: 364  LWGLIVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIVSQSPN+MDL+KCDGAALL+K+K HRLG+TP+DFQ+ DIVSWL EYH DSTG
Sbjct: 424  MRDAPLGIVSQSPNIMDLIKCDGAALLFKSKVHRLGITPTDFQLHDIVSWLSEYHMDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAGF GALALGDA+CGMA+V+I+DKDWLFWFRSHTAAE+RWGG KHEPDEKDD
Sbjct: 484  LSTDSLYDAGFQGALALGDAICGMASVRISDKDWLFWFRSHTAAEVRWGGEKHEPDEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSF-KEADSTDSYAKA--IH 886
            GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+F KEAD+ D+ A A  IH
Sbjct: 544  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFGKEADTMDTKANANAIH 603

Query: 887  TKLNDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAI 1066
            +KLNDL+I+G+QELEAVTSEMVRLIETA+VPILAVDVDG+VNGWNTKIA+LTGL VD AI
Sbjct: 604  SKLNDLRIDGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLTVDEAI 663

Query: 1067 GCHFLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDM 1246
            G HFL+LVEDSS   V  ML LAL+G+EE+NVQFEIKTHG+RSESGPI+L+VNACASRD+
Sbjct: 664  GKHFLTLVEDSSVHNVRKMLSLALQGKEEKNVQFEIKTHGQRSESGPISLIVNACASRDV 723

Query: 1247 KENVVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAA 1426
            +E+VVGVCFIAQD+T QK++MDKFTRIEGDY+AI+QNPNPLIPPIFGTDEFGWCSEWN+A
Sbjct: 724  QESVVGVCFIAQDITGQKTIMDKFTRIEGDYRAIIQNPNPLIPPIFGTDEFGWCSEWNSA 783

Query: 1427 MTKVSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGF 1606
            MT +SGW RD+VM+KMLLGEVFGT +A CRLKNQEA+VNLG+VLNNA+TGQ +EK  FGF
Sbjct: 784  MTNLSGWCRDEVMDKMLLGEVFGTQKACCRLKNQEAFVNLGVVLNNAITGQVSEKTRFGF 843

Query: 1607 FSRSGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLS 1786
            F+R+GKYVECLL VSK+LD EGAV G+FCF              Q+LSEQTAMKRLKVL+
Sbjct: 844  FARNGKYVECLLSVSKRLDREGAVTGLFCFLQLASQELQQALRFQKLSEQTAMKRLKVLA 903

Query: 1787 YMRKEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYL 1966
            Y+R++V+NPLSGI+FSRKM+EGT + ++QK++L TS  CQ+QL+K+LDDTDLD IIEGYL
Sbjct: 904  YIRRQVKNPLSGIMFSRKMLEGTELGKDQKSILHTSAQCQQQLSKVLDDTDLDCIIEGYL 963

Query: 1967 DLEMVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLL 2146
            DLEMVEFKL +VL ASISQVM KSNGK + I++D+A N+  ETLYGDSLRLQQ+L+ FL 
Sbjct: 964  DLEMVEFKLDEVLQASISQVMTKSNGKSLRIINDIADNILCETLYGDSLRLQQILSEFLS 1023

Query: 2147 ISVTYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACE 2326
            ++V +TPS GQL +++ LTKD++G++IQL HLEFR+TH+GGGVP+++L+QMFG + DA E
Sbjct: 1024 VAVNFTPSGGQLALSSKLTKDNLGESIQLAHLEFRLTHTGGGVPEELLTQMFGSEADASE 1083

Query: 2327 EGISLFISRKLVKLMN 2374
            +GISL ISRKLVKLMN
Sbjct: 1084 DGISLLISRKLVKLMN 1099


>ref|XP_007031301.1| Phytochrome A [Theobroma cacao] gi|508719906|gb|EOY11803.1|
            Phytochrome A [Theobroma cacao]
          Length = 1121

 Score = 1256 bits (3251), Expect = 0.0
 Identities = 611/794 (76%), Positives = 705/794 (88%), Gaps = 3/794 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEGS--NSTHPD-KRK 172
            + LP DLTLCGS+LRAPHSCHLQYMENMNSIASLVM+++VN+GDEEG   +S  P  KRK
Sbjct: 300  DKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVIVNDGDEEGDGPDSAQPQQKRK 359

Query: 173  RLWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDM 352
            RLWGLVVCH+T+PRFVPFPLRYACEFL QVFAIHVNKE+ELENQ++EKNILRTQTLLCDM
Sbjct: 360  RLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELENQIIEKNILRTQTLLCDM 419

Query: 353  LLRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDST 532
            LLRDAP+GI+SQSPN+MDLVKCDGAALLYKNK  +LG+TPSDFQ+ +I SWL EYH DST
Sbjct: 420  LLRDAPMGIISQSPNIMDLVKCDGAALLYKNKIWKLGVTPSDFQLHEIASWLSEYHMDST 479

Query: 533  GLSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKD 712
            GLSTDSLYDAGFPGALALGD VCGMAAV+IT KD LFWFRSHTAAEIRWGGAKHEP EKD
Sbjct: 480  GLSTDSLYDAGFPGALALGDVVCGMAAVRITLKDMLFWFRSHTAAEIRWGGAKHEPGEKD 539

Query: 713  DGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTK 892
            +GRKMHPRSSFKAFL+VVKTRS+PWKDYEMDAIHSLQLILRN+FK+ ++TD+   AIH+K
Sbjct: 540  NGRKMHPRSSFKAFLQVVKTRSMPWKDYEMDAIHSLQLILRNAFKDVETTDTNTSAIHSK 599

Query: 893  LNDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGC 1072
            L+DL+IEG+QELEAVTSEMVRLIETA+VPILAVDVDG+VNGWN KIA+LTGLPVD AIG 
Sbjct: 600  LSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNMKIAELTGLPVDKAIGK 659

Query: 1073 HFLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKE 1252
            H L+LVEDSS + V  ML LAL+G+EE+N+QFEIKTHG R E+GPI+LVVNACA+RD+ E
Sbjct: 660  HLLTLVEDSSVETVKQMLVLALQGKEEKNIQFEIKTHGSRIEAGPISLVVNACANRDLHE 719

Query: 1253 NVVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMT 1432
            NVVGVCF+AQD+T QK +MDKFTRIEGDYKAIVQNPNPLIPPIFG DEFGWCSEWN AMT
Sbjct: 720  NVVGVCFVAQDITGQKIVMDKFTRIEGDYKAIVQNPNPLIPPIFGMDEFGWCSEWNPAMT 779

Query: 1433 KVSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFS 1612
            K++GW RD+V++KMLLGEVFGT+ A CRLK+Q+++VNLG+VLNNA+TG + EK+PFGFF+
Sbjct: 780  KLTGWKRDEVVDKMLLGEVFGTHIACCRLKSQDSFVNLGVVLNNAMTGHEPEKVPFGFFA 839

Query: 1613 RSGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYM 1792
            RSGKYVECLLCV+KKLD E AV GVFCF            HVQRLSEQTAMKRLK L+Y+
Sbjct: 840  RSGKYVECLLCVNKKLDREDAVTGVFCFLQLASHELQQALHVQRLSEQTAMKRLKALAYL 899

Query: 1793 RKEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDL 1972
            ++++RNPLSGIIFSRKMMEGT +  EQK LL+TS  CQRQL+KILDD+DLD II+GYLDL
Sbjct: 900  KRQIRNPLSGIIFSRKMMEGTELGPEQKRLLQTSTLCQRQLSKILDDSDLDSIIDGYLDL 959

Query: 1973 EMVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLIS 2152
            EM++F LH+VL+ASISQVM+KSNGKGI IV+D    + +ETLYGDS+RLQQVLA FLLIS
Sbjct: 960  EMIDFTLHEVLVASISQVMMKSNGKGIRIVNDTEEEVMTETLYGDSVRLQQVLADFLLIS 1019

Query: 2153 VTYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEG 2332
            V +TP+ GQL + ASLTKD +G+++ L HLE RITH+GGGVP+ +LSQMFG D DA EEG
Sbjct: 1020 VNFTPNGGQLVVVASLTKDQLGQSVHLAHLELRITHAGGGVPEALLSQMFGSDGDASEEG 1079

Query: 2333 ISLFISRKLVKLMN 2374
            ISL ISRKLVKLMN
Sbjct: 1080 ISLLISRKLVKLMN 1093


>ref|XP_006423945.1| hypothetical protein CICLE_v10027712mg [Citrus clementina]
            gi|568853345|ref|XP_006480323.1| PREDICTED: phytochrome
            A-like [Citrus sinensis] gi|557525879|gb|ESR37185.1|
            hypothetical protein CICLE_v10027712mg [Citrus
            clementina]
          Length = 1117

 Score = 1233 bits (3190), Expect = 0.0
 Identities = 599/791 (75%), Positives = 692/791 (87%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEGSNSTHPDKRKRLW 181
            E LP DLTLCGS+LRAPHSCHLQYMENMNSIASLVM++VVN+ +EEG N T P KRKRLW
Sbjct: 304  EKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDN-TLPQKRKRLW 362

Query: 182  GLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDMLLR 361
            GLVVCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELE Q+LEKNILRTQTLLCDML+R
Sbjct: 363  GLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMR 422

Query: 362  DAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTGLS 541
            DAPLGIV+QSPN+MDLVKCDGAALLYKNK  RLG+TP+DFQ+ DIVSWL EYH DSTGLS
Sbjct: 423  DAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLS 482

Query: 542  TDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDDGR 721
             DSLYDAG+PGALALGD VCGMAAV+I+ KD +FWFRS TA+E+RWGGAKHEPDEKDDGR
Sbjct: 483  ADSLYDAGYPGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGR 542

Query: 722  KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKLND 901
            KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+FK+  + D   K+IH+KL D
Sbjct: 543  KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCD 602

Query: 902  LQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCHFL 1081
            L+IEG++ELEAVTSEMVRLIETA+VPILAVDVDG+VNGWNTKIA+LTGL VD AIG HFL
Sbjct: 603  LKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFL 662

Query: 1082 SLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKENVV 1261
            +LVEDSS D V  ML LAL+G+EE+N+QFEIKTHG +    PITL+VNACASRD+ +NVV
Sbjct: 663  TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVV 722

Query: 1262 GVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTKVS 1441
            GVCF+AQD+T QK++MDKFTRIEGDYKAIVQNPNPLIPPIFG+DEFGWC EWN AM K++
Sbjct: 723  GVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLT 782

Query: 1442 GWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSRSG 1621
            GW R++V++K+LL EVFGTN A CRLKNQEA+VNLGIVLN A++GQD EK+PFGFF+R+G
Sbjct: 783  GWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNG 842

Query: 1622 KYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMRKE 1801
            KY ECLLCV+KKLD EGAV GVFCF            HVQRLSEQTA+KRLK L+Y +++
Sbjct: 843  KYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQ 902

Query: 1802 VRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLEMV 1981
            +RNPLSGIIFSRKMMEGT +  EQK LL TS  CQRQL+KILDD+DLD II+GYLDLEMV
Sbjct: 903  IRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMV 962

Query: 1982 EFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISVTY 2161
            EF L++VL+ASISQVM+KSN KGI IV++ A  + SETLYGDS+RLQQVLA FL IS+ +
Sbjct: 963  EFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINF 1022

Query: 2162 TPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGISL 2341
             P+ GQL +++SLTKD +G+++ L +LE RITH+GGG+P+ +L QMFG + D  EEGISL
Sbjct: 1023 VPNGGQLMVSSSLTKDQLGRSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISL 1082

Query: 2342 FISRKLVKLMN 2374
             ISRKLVKLMN
Sbjct: 1083 LISRKLVKLMN 1093


>gb|EXB57569.1| Phytochrome type A [Morus notabilis]
          Length = 1130

 Score = 1227 bits (3175), Expect = 0.0
 Identities = 593/793 (74%), Positives = 691/793 (87%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEGS--NSTHPDKRKR 175
            E LP DLTLCGS+LRAPHSCHLQYM+NMNSIASLVM++VVNEGD++    NS+ P KRKR
Sbjct: 304  EKLPFDLTLCGSTLRAPHSCHLQYMDNMNSIASLVMAVVVNEGDDDDDSPNSSQPQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+TSPRFVPFPLRYACEFL QVFAIHVNKELELENQ++EKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIVSQSPN+MDLVKCDGAALLY+NK  RLG+ PSD Q+ DIV WL E+H DSTG
Sbjct: 424  MRDAPLGIVSQSPNIMDLVKCDGAALLYRNKVWRLGIAPSDSQLHDIVLWLSEHHMDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAG+PGA AL D +CGMAAV+IT KD +FWFRSHTAAEI+WGGAKHEP EKDD
Sbjct: 484  LSTDSLYDAGYPGAHALDDVICGMAAVRITSKDMIFWFRSHTAAEIQWGGAKHEPGEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GRKMHPRSSFKAFLEVVKTRS PWKDYEMDAIHSLQLILRN+FK+ ++ DS    I+T+L
Sbjct: 544  GRKMHPRSSFKAFLEVVKTRSFPWKDYEMDAIHSLQLILRNAFKDTEALDSNTMTINTRL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
             DL+ EG+QELEAVTSEMVRLIETA+VPILAVD+DG+VNGWNTKI+DLTGLPV+ AIG H
Sbjct: 604  TDLKFEGMQELEAVTSEMVRLIETATVPILAVDIDGVVNGWNTKISDLTGLPVEQAIGAH 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSS + V  ML+LAL+G+EERN+QFEIKTHG RS+SGPI+LVVNACASRD+  N
Sbjct: 664  LLTLVEDSSTEVVRVMLELALQGKEERNIQFEIKTHGSRSDSGPISLVVNACASRDLNGN 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCF+AQD+TAQK+MMDKFTRIEGDYKAIVQN NPLIPPIFG DEFGWCSEWN AMTK
Sbjct: 724  VVGVCFVAQDLTAQKTMMDKFTRIEGDYKAIVQNRNPLIPPIFGADEFGWCSEWNPAMTK 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            ++GW R++V++KMLLGEVFG +   CRLKNQEA+VNLG+VLNNA+TGQ++EK+PFGFF+R
Sbjct: 784  ITGWKREEVIDKMLLGEVFGVSMTCCRLKNQEAFVNLGVVLNNAMTGQESEKVPFGFFAR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
            +GKY+ECLLCVSKKLD +GAV GVFCF            HVQRL EQ A KRLK L+Y++
Sbjct: 844  NGKYIECLLCVSKKLDRDGAVTGVFCFLQLASLELQQALHVQRLMEQIATKRLKALAYIK 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            +++RNPLSGIIFSRKMMEGT +  EQK LL TS  CQRQL+KILDD+DLD+IIEGY DLE
Sbjct: 904  RQIRNPLSGIIFSRKMMEGTELGLEQKQLLHTSAQCQRQLSKILDDSDLDNIIEGYSDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            MVEF LH++L+A+ SQVM+K   KGI +V+D +   +++TLYGDSLRLQQVLA FLLISV
Sbjct: 964  MVEFTLHEILVAATSQVMMKIKAKGIRLVEDASEETTNDTLYGDSLRLQQVLADFLLISV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
             +TP+ GQ+ IAA+LTKD +G+++ L  LE R+TH+G G+P+ +L+QMFG D D  EEGI
Sbjct: 1024 NFTPNGGQIVIAANLTKDHLGESVHLVRLELRLTHTGSGIPESLLNQMFGTDGDVSEEGI 1083

Query: 2336 SLFISRKLVKLMN 2374
            SL ISRKLVKLMN
Sbjct: 1084 SLLISRKLVKLMN 1096


>ref|XP_002512596.1| phytochrome A, putative [Ricinus communis]
            gi|223548557|gb|EEF50048.1| phytochrome A, putative
            [Ricinus communis]
          Length = 1124

 Score = 1224 bits (3167), Expect = 0.0
 Identities = 598/793 (75%), Positives = 691/793 (87%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEGSNST--HPDKRKR 175
            E LP++LTLCGS+LRAPHSCHLQYMENM+S+ASLVM++VVNEGDE+  + T   P KRKR
Sbjct: 304  EKLPLELTLCGSTLRAPHSCHLQYMENMDSVASLVMAVVVNEGDEDDDSPTSVQPQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELENQ++EKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            LRDAPLGI++QSPN+ DLVKCDGAALLYKNK  RLG+TPSD QIRDI  WL EYH DSTG
Sbjct: 424  LRDAPLGILTQSPNITDLVKCDGAALLYKNKIWRLGVTPSDLQIRDIAVWLSEYHMDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAG+  AL+L D VCGMAAV+IT KD LFWFR+ TAAEIRWGGAKHEP EKDD
Sbjct: 484  LSTDSLYDAGYSAALSLEDVVCGMAAVRITSKDMLFWFRAPTAAEIRWGGAKHEPGEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+FK+A++ D+ AKAIH++L
Sbjct: 544  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDAETMDADAKAIHSRL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            +DL+IEG+QELEAVTSEMVRLIETA+VPILAVDVDG+VNGWNTKIA+LTGLPVD AIG H
Sbjct: 604  SDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLPVDKAIGKH 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVED S D V  ML  AL+G+EE+N+QFEIKTHG + ESGPI+LVVNACASRD+ EN
Sbjct: 664  LLTLVEDGSIDLVKNMLFSALQGKEEQNIQFEIKTHGSKVESGPISLVVNACASRDISEN 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCF+AQD+T QK++MDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN AM K
Sbjct: 724  VVGVCFVAQDITGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMAK 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            ++GW R++VM+KMLLGEVFG NRA C LKNQEA+VNLG+++NNA+T Q  EK+ F FF+R
Sbjct: 784  LTGWKREEVMDKMLLGEVFGINRACCCLKNQEAFVNLGVLINNAMTSQVPEKVSFSFFAR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
            + KYVECLLCVSKKLD EGAV GVFCF            H+QRLSEQTA+KRLK L+Y++
Sbjct: 844  NKKYVECLLCVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKTLAYIK 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            ++++NPLSGI+FSRK+ME T +D EQK LL TS  CQRQL+KILDD+D+D I+EGYLDLE
Sbjct: 904  RQIQNPLSGIMFSRKLMEITELDAEQKQLLHTSAQCQRQLSKILDDSDIDSIVEGYLDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            MVEF LH+VLIA+ISQV IKS GKGI IV+D A  + +ETLYGDS+RLQQVLA FL  SV
Sbjct: 964  MVEFTLHEVLIAAISQVTIKSKGKGIRIVNDAAEVIMTETLYGDSIRLQQVLADFLAASV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
             +TP  GQL IAA  TKD +G+++ L HLE RITH+GGG+P+ +L+QMFG D D  +EG+
Sbjct: 1024 DFTPPGGQLTIAAKFTKDQLGQSVHLVHLELRITHAGGGIPEPLLNQMFGSDGDVSDEGV 1083

Query: 2336 SLFISRKLVKLMN 2374
            SLFISRKLVKLMN
Sbjct: 1084 SLFISRKLVKLMN 1096


>ref|XP_002318913.1| phytochrome A family protein [Populus trichocarpa]
            gi|222857289|gb|EEE94836.1| phytochrome A family protein
            [Populus trichocarpa]
          Length = 1126

 Score = 1221 bits (3160), Expect = 0.0
 Identities = 598/793 (75%), Positives = 684/793 (86%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEGS--NSTHPDKRKR 175
            E LP DLTLCGS+LRAPHSCHLQYMENMNSIASLVM++VVN+GDE+G   +S +P KRKR
Sbjct: 304  EKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSVNPQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+TSPRFVPFPLRYACEFL QVFAIHVNKELELENQ++EKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIV+QSPN+MDLVKCDGA L Y+NK  RLG+TPSD Q++DI  WL EYH DSTG
Sbjct: 424  MRDAPLGIVTQSPNIMDLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAG+PGALALGD VCGMAAV+IT KD LFWFRS TAAEIRWGGAKHEP EKDD
Sbjct: 484  LSTDSLYDAGYPGALALGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GR+MHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+FK+ ++ D   K IH +L
Sbjct: 544  GRRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDIETMDVDTKTIHARL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            +DL+IEG+QELEAVTSEMVRLIETA+VPILAVDVDG+VNGWNTKI++LTGL VD AIG H
Sbjct: 604  SDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKH 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSS D V  ML LAL+G+EE+N+QFEIKTHG +SE GPI LVVNACASRD+ EN
Sbjct: 664  LLTLVEDSSVDIVKRMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHEN 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCF+ QD+T QK +MDKFTRIEGDYKAIVQN NPLIPPIFGTDEFGWCSEWN AMT 
Sbjct: 724  VVGVCFVGQDITGQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTN 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            ++GW R++V++KMLLGEVFG N A CRLKNQEA+VNLG+VLN A+TGQ++EK+ FGFF+R
Sbjct: 784  LTGWKREEVLDKMLLGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFAR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
            +GKYVECLLCVSKKLD EGAV GVFCF            HVQRLSEQTA+KRLK L+Y++
Sbjct: 844  TGKYVECLLCVSKKLDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALAYLK 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            +++ NPLSGIIFS KMMEGT +  EQK LL TS  CQ QL+KILDD+DLD IIEGYLDLE
Sbjct: 904  RQIWNPLSGIIFSGKMMEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEGYLDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            MVEF L +VL+A+ SQVM+KSN KGI I++D A    +ETLYGDS+RLQQVLA FL +SV
Sbjct: 964  MVEFTLREVLVAATSQVMMKSNEKGIRIINDAAEETMAETLYGDSIRLQQVLADFLQMSV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
             +TPS G L ++ASLTKD +G+++ L HLE RI H G G+P+ +L QMFG+D DA  EGI
Sbjct: 1024 NFTPSGGLLSVSASLTKDQLGQSVYLVHLELRIRHPGAGIPEALLDQMFGEDTDASVEGI 1083

Query: 2336 SLFISRKLVKLMN 2374
            SL ISRKLVKLMN
Sbjct: 1084 SLVISRKLVKLMN 1096


>gb|AEK26583.1| phytochrome A [Populus tremula]
          Length = 1109

 Score = 1218 bits (3152), Expect = 0.0
 Identities = 596/793 (75%), Positives = 684/793 (86%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEEGS--NSTHPDKRKR 175
            E LP DLTLCGS+LRAPHSCHLQYMENMNSIASLVM++VVN+GDE+G   +S +P KRKR
Sbjct: 304  EKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSANPQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+TSPRFVPFPLRYACEFL QVFAIHVNKELELENQ++EKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            +RDAPLGIV+QSPN+MDLVKCDGA L Y+NK  RLG+TPSD Q++DI  WL EYH DSTG
Sbjct: 424  MRDAPLGIVTQSPNIMDLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAG+PGALALGD VCGMAAV+IT KD LFWFRS TAAEIRWGGAKHEP EKDD
Sbjct: 484  LSTDSLYDAGYPGALALGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDD 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            GR+MHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+FK+ ++ D   K IH +L
Sbjct: 544  GRRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDIETMDVDTKTIHARL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            +DL+IEG+QELEAVTSEMVRLIETA+VPILAVDVDG+VNGWNTKI++LTGL VD AIG H
Sbjct: 604  SDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKH 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVEDSS D V  ML LAL+G+EE+N+QFEIKTHG +SE GPI LVVNACASRD+ EN
Sbjct: 664  LLTLVEDSSVDIVKRMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHEN 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCF+ QD+T QK +MDKFTRIEGDYKAIVQN NPLIPPIFGTDEFGWCSEWN AMT 
Sbjct: 724  VVGVCFVGQDITGQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTN 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
            ++GW R++V++KMLLGEVFG N A CRLKNQEA+VNLG+VLN A+TGQ++EK+ FGFF+R
Sbjct: 784  LTGWKREEVLDKMLLGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFAR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
            +GKYVECLLCVSKKLD EGAV GVFCF            HVQRLSEQTA+KRLK L+Y++
Sbjct: 844  TGKYVECLLCVSKKLDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALAYLK 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            K++ NPLSGIIFS KMMEGT +  EQK LL TS  CQ QL+KILDD+DLD IIEGYLDLE
Sbjct: 904  KQIWNPLSGIIFSGKMMEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEGYLDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            MVEF L +VL+A+ SQVM+KSN KGI I++D A  + +ETLYGDS+RLQQVLA FLL+SV
Sbjct: 964  MVEFTLREVLVAATSQVMMKSNEKGIRIINDAAEEMMAETLYGDSIRLQQVLADFLLMSV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
             +TPS G L ++AS +KD +G+++ L HLE RI H G G+P+ +L QM+G+D  A  EGI
Sbjct: 1024 NFTPSGGLLTVSASFSKDQLGQSVYLVHLELRIRHPGAGIPEALLDQMYGEDTGASVEGI 1083

Query: 2336 SLFISRKLVKLMN 2374
            SL ISRKLVKLMN
Sbjct: 1084 SLVISRKLVKLMN 1096


>ref|XP_004302312.1| PREDICTED: phytochrome A-like [Fragaria vesca subsp. vesca]
          Length = 1124

 Score = 1216 bits (3145), Expect = 0.0
 Identities = 594/793 (74%), Positives = 687/793 (86%), Gaps = 2/793 (0%)
 Frame = +2

Query: 2    ENLPIDLTLCGSSLRAPHSCHLQYMENMNSIASLVMSIVVNEGDEE--GSNSTHPDKRKR 175
            E LP+DLTLCGS+LRAPHSCHLQYMENMNSIASLVM++V+NEGD+E  G +S    KRKR
Sbjct: 304  EKLPLDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVINEGDDEVAGPDSAQTQKRKR 363

Query: 176  LWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQMLEKNILRTQTLLCDML 355
            LWGLVVCH+T+PRFVPFPLRYACEFL QVFAIHVNKELELE+QM+EKNILRTQTLLCDML
Sbjct: 364  LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEDQMIEKNILRTQTLLCDML 423

Query: 356  LRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKHRLGMTPSDFQIRDIVSWLDEYHRDSTG 535
            LRDAPLGIVSQ+PN+MDLVKCDGAALLYKNK  RLG+TPSDFQI+DI  WL E H DSTG
Sbjct: 424  LRDAPLGIVSQTPNIMDLVKCDGAALLYKNKIWRLGLTPSDFQIQDISLWLSECHMDSTG 483

Query: 536  LSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTAAEIRWGGAKHEPDEKDD 715
            LSTDSLYDAGFPGALALGD VCGMAAVKIT KD +FWFRSHTAAEIRWGGAKH+PDEKD+
Sbjct: 484  LSTDSLYDAGFPGALALGDVVCGMAAVKITSKDIIFWFRSHTAAEIRWGGAKHDPDEKDN 543

Query: 716  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKEADSTDSYAKAIHTKL 895
            G KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRN+FK+    D     I  +L
Sbjct: 544  GWKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGDMDVNNNGIQMQL 603

Query: 896  NDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWNTKIADLTGLPVDNAIGCH 1075
            +DL+I+G+QELEAVT EMVRLIETASVPILAVD++G VNGWNTKI++LTGLPVD AIG +
Sbjct: 604  SDLKIDGVQELEAVTGEMVRLIETASVPILAVDIEGSVNGWNTKISELTGLPVDKAIGKN 663

Query: 1076 FLSLVEDSSADAVSTMLKLALKGEEERNVQFEIKTHGERSESGPITLVVNACASRDMKEN 1255
             L+LVE+SS   V  ML+LAL+G+EE+N+QFEIKTHG R++ GPI+LVVNACASRD+ EN
Sbjct: 664  LLTLVEESSTIMVGRMLELALQGKEEQNIQFEIKTHGARADFGPISLVVNACASRDIHEN 723

Query: 1256 VVGVCFIAQDVTAQKSMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNAAMTK 1435
            VVGVCF+AQD+T QK++MDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN AMTK
Sbjct: 724  VVGVCFVAQDITGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMTK 783

Query: 1436 VSGWTRDDVMNKMLLGEVFGTNRASCRLKNQEAYVNLGIVLNNAVTGQDNEKLPFGFFSR 1615
             +GW R++VM+KMLLGEVFG + A C LKNQEA+VNLG+V+N A+TG+ +EK+PFGF++R
Sbjct: 784  STGWKREEVMDKMLLGEVFGIHMACCPLKNQEAFVNLGVVINRAMTGEVSEKVPFGFWNR 843

Query: 1616 SGKYVECLLCVSKKLDAEGAVIGVFCFXXXXXXXXXXXXHVQRLSEQTAMKRLKVLSYMR 1795
             GKY ECLLCVSKKLD+EGAV GVFCF            HVQRLSEQTA+KR K L+Y++
Sbjct: 844  GGKYTECLLCVSKKLDSEGAVTGVFCFLQLASLELQQALHVQRLSEQTAVKRFKALAYIK 903

Query: 1796 KEVRNPLSGIIFSRKMMEGTNMDEEQKNLLRTSLHCQRQLNKILDDTDLDHIIEGYLDLE 1975
            +++RNPLSGI+FSRKM+EGT +  EQK L+ TS  CQ+QL+KILDD+DLD II+GYLDLE
Sbjct: 904  RQIRNPLSGILFSRKMIEGTELGAEQKQLIHTSAQCQQQLSKILDDSDLDSIIDGYLDLE 963

Query: 1976 MVEFKLHDVLIASISQVMIKSNGKGIMIVDDLAPNLSSETLYGDSLRLQQVLAAFLLISV 2155
            MVEF L +VL+ASISQVMIKS+ K I IV D    + +ETLYGDSLRLQQVLA FL +SV
Sbjct: 964  MVEFTLQEVLVASISQVMIKSSAKSIRIVQDANEEIMTETLYGDSLRLQQVLADFLSVSV 1023

Query: 2156 TYTPSRGQLGIAASLTKDSIGKTIQLGHLEFRITHSGGGVPQQVLSQMFGDDVDACEEGI 2335
             Y PS GQL +A +LTKD +G+++ L HLEFRI+H+GGG+P+ +L+QMFG D D  EEGI
Sbjct: 1024 NYMPSGGQLTLATNLTKDQLGQSVHLAHLEFRISHAGGGIPEGLLNQMFGTDGDISEEGI 1083

Query: 2336 SLFISRKLVKLMN 2374
            SL ISRKLVKLMN
Sbjct: 1084 SLLISRKLVKLMN 1096