BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00031107
         (398 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic st...    86   5e-15
ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus] gi|5...    86   5e-15
gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus]     82   1e-13

>ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic stunt virus]
          Length = 846

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 38/42 (90%), Positives = 41/42 (97%)
 Frame = -2

Query: 397 TSSNSVEKAFSQCWAMRCAPNSSSRKVTFEPDWRKNKFLGIS 272
           TSS+S+ KAFSQCWAMRCAPNSSSRKVTFEP+WRKNKFLGIS
Sbjct: 805 TSSDSIAKAFSQCWAMRCAPNSSSRKVTFEPEWRKNKFLGIS 846


>ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus]
            gi|50400776|sp|Q8QVV0.1|POL1_CNSV RecName: Full=RNA1
            polyprotein; AltName: Full=P1; Contains: RecName:
            Full=P1A protein; Short=1A; AltName: Full=Protease
            cofactor; Contains: RecName: Full=Putative ATP-dependent
            helicase; AltName: Full=1B; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=1C-VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; AltName: Full=1D-PRO; Contains: RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
            gi|20160382|dbj|BAB89369.1| polyprotien 1 [Cycas necrotic
            stunt virus]
          Length = 2336

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 38/42 (90%), Positives = 41/42 (97%)
 Frame = -2

Query: 397  TSSNSVEKAFSQCWAMRCAPNSSSRKVTFEPDWRKNKFLGIS 272
            TSS+S+ KAFSQCWAMRCAPNSSSRKVTFEP+WRKNKFLGIS
Sbjct: 2295 TSSDSIAKAFSQCWAMRCAPNSSSRKVTFEPEWRKNKFLGIS 2336


>gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus]
          Length = 1984

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 35/42 (83%), Positives = 40/42 (95%)
 Frame = -2

Query: 397  TSSNSVEKAFSQCWAMRCAPNSSSRKVTFEPDWRKNKFLGIS 272
            TSS+++ KAFSQCWAMRCAPNSSSRK+TFEP+WRKNK LGIS
Sbjct: 1943 TSSDTIAKAFSQCWAMRCAPNSSSRKITFEPEWRKNKVLGIS 1984