BLASTX nr result

ID: Mentha26_contig00026611 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00026611
         (361 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004292768.1| PREDICTED: pre-mRNA-processing protein 40A-l...    61   1e-07
ref|XP_002320019.2| FF domain-containing family protein [Populus...    57   3e-06

>ref|XP_004292768.1| PREDICTED: pre-mRNA-processing protein 40A-like [Fragaria vesca
            subsp. vesca]
          Length = 990

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
 Frame = +2

Query: 2    RRSKDRGGGNRKAKDRRKINETDS---DGSDSYS-LEETXXXXXXXXXXXXXXXXXXXXX 169
            R+ KDR     K K+R K +ETDS   D +DS+   E+                      
Sbjct: 862  RKEKDREREKEKGKERSKKDETDSETVDMTDSHDHKEDKKREKDKDRKHRKRHQSSIDDV 921

Query: 170  XXXXXEKERSRSHRYISDSKKSKQVEKQLWNDEADMENQSKKQKRDHGDGSSRNNDNEVR 349
                 EKE S+ HR+ SD KKS+   K+ +  E+D EN+ ++ K++H DGS RN   E  
Sbjct: 922  GSDKEEKEDSKKHRHSSDRKKSR---KRAYTPESDSENRHRRHKKEHRDGSRRNGGYEEL 978

Query: 350  KIGE 361
            + GE
Sbjct: 979  EDGE 982


>ref|XP_002320019.2| FF domain-containing family protein [Populus trichocarpa]
            gi|550323102|gb|EEE98334.2| FF domain-containing family
            protein [Populus trichocarpa]
          Length = 1019

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 42/124 (33%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
 Frame = +2

Query: 5    RSKDRGGGNRKAKDRRKINETDS---DGSDSYS-LEETXXXXXXXXXXXXXXXXXXXXXX 172
            + K++     K K R K NETD    D SD Y   ++                       
Sbjct: 881  KEKEKEREREKGKQRTKKNETDGENVDASDGYGHKDDKKREKDKDRKHRKRHQSAIDDVN 940

Query: 173  XXXXEKERSR-SHRYISDSKKSKQVEKQLWNDEADMENQSKKQKRDHGDGSSRNNDNEVR 349
                EKE S+ S ++ SD KKS+   K  +  E+D E+Q K+ KRDH DGS RN  NE  
Sbjct: 941  SDKDEKEESKKSRKHSSDRKKSR---KHTYTPESDGESQHKRHKRDHRDGSRRNGSNEEL 997

Query: 350  KIGE 361
            + GE
Sbjct: 998  EDGE 1001


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