BLASTX nr result
ID: Mentha26_contig00026387
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha26_contig00026387
(2420 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus... 1484 0.0
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su... 1460 0.0
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su... 1458 0.0
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 1443 0.0
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun... 1437 0.0
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ... 1436 0.0
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su... 1431 0.0
ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phas... 1425 0.0
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su... 1425 0.0
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su... 1424 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 1419 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1419 0.0
emb|CBI18915.3| unnamed protein product [Vitis vinifera] 1417 0.0
ref|XP_006282990.1| hypothetical protein CARUB_v10003976mg [Caps... 1417 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 1416 0.0
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z... 1415 0.0
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su... 1414 0.0
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su... 1414 0.0
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su... 1414 0.0
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su... 1414 0.0
>gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus guttatus]
Length = 1842
Score = 1484 bits (3843), Expect = 0.0
Identities = 730/793 (92%), Positives = 757/793 (95%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MDLRFPFSPAEVAKVR VQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETCMANMA+CPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCSKILA+ EEPK
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKIVLSILRCVCFNCSKILADEEEPK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQAMRIRNPKNRL+KIL+ACK+K+KC+GGDEIDGH QDTEEPVKKSRGGCGAQQPK+++
Sbjct: 121 FKQAMRIRNPKNRLRKILDACKNKTKCDGGDEIDGHSQDTEEPVKKSRGGCGAQQPKISI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
DGMK+VA+YK MPEPVERKQ LSAEKVLSILKRITDEDC+ LGLNP+FAR
Sbjct: 181 DGMKMVAEYKLQKKKSDDQDQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKFAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
LLRYSAWHQE EKGFITPGDTQVRIEKGELL+GTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHQETEKGFITPGDTQVRIEKGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFSMGIGDTIAD TM KI+ETI+ AKNEV ELIRAAQEKQL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
E EPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
lycopersicum]
Length = 1846
Score = 1460 bits (3779), Expect = 0.0
Identities = 713/793 (89%), Positives = 751/793 (94%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MDLRFPFSPAEVAKVR VQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETCMANMA+CPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCSKILA+ ++PK
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQAMRIRNPKNRL+K+L+ACK+K+KCEGGDEID GQDTEEPVKKSRGGCGAQQPK+++
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
DGMK+VA+YK MPEPVERKQ LSAE+VLSILKR++DEDC LGLNP+FAR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQ L SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDNDLPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRK+TKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
LLRYSAWH + EKG+ITPGDTQVRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQ AFS+GIGDTIAD TM KI+ETI+ AK +V ELI+AAQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
tuberosum]
Length = 1839
Score = 1458 bits (3774), Expect = 0.0
Identities = 712/793 (89%), Positives = 750/793 (94%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MDLRFPFSPAEVAKVR VQFGI+SPDEIRQMSVVHIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETCMANMA+CPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCSKILA+ ++PK
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQAMRIRNPKNRL+K+L+ACK+K+KCEGGDEID G DTEEPVKKSRGGCGAQQPK+++
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
DGMK+VA+YK MPEPVERKQ LSAE+VLSILKR++DEDC LGLNP+FAR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQ L SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDNDLPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRK+TKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
LLRYSAWH + EKG+ITPGDTQVRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQ AFS+GIGDTIAD TM KI+ETI+ AK +V ELI+AAQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 1443 bits (3736), Expect = 0.0
Identities = 705/793 (88%), Positives = 748/793 (94%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD+RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+ E+ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA +IRNPKNRLKKIL+ACK+KSKCEGGDEI+ D++EPVKKSRGGCGAQQPKLT+
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YK +PEPVERKQ LSAE+VL++LKRI+DEDC LGLNP++AR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI+KDVFMNILMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
LLR SAWH E E GFITPGDTQVRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQN FS+GIGDTIAD TM KI+ETI+KAKNEV ELIRAAQE+QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
[Populus trichocarpa] gi|550338614|gb|ERP60834.1|
DNA-directed RNA polymerase II largest subunit family
protein [Populus trichocarpa]
Length = 1837
Score = 1437 bits (3721), Expect = 0.0
Identities = 699/793 (88%), Positives = 748/793 (94%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD RFP+SPAEVAKVR VQFGILSPDEIRQMSV+ IEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+ E+ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA++I+NPK+RLKKIL+ACK+K+KCEGGDEID GQD EEPVKKSRGGCGAQQPKLT+
Sbjct: 121 FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YK +PEPVERKQ L+AE+VLS+LKRI+DEDC+ LGL+P++AR
Sbjct: 181 EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQER+GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAPTI+KP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L+R +AWH + E+G ITPGDT VRIEKGELLSGTLCKKTLG+SSGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM KI+ETI+ AKNEV +LIR AQ K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|590702285|ref|XP_007046586.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 1436 bits (3716), Expect = 0.0
Identities = 702/793 (88%), Positives = 742/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MDLRFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+ EE K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA++I+NPKNRLKKIL+ACK+KSKCEGGDEID GQDTEEPVKKSRGGCGAQQPKL++
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
DGMK++A+YK +PEPVERKQ L+AE+VLS+LKRI+DEDC+ LGLNP+FAR
Sbjct: 181 DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTH LAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFHVATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
LLR SAWH E E GFITPGDTQVRIEKGELLSGTLCKK LG+SSGSLIHVIWEEVGPDAA
Sbjct: 601 LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM KI+ETI+KAK EV LI AQ K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEEVKNLIVKAQNKDL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
E EPGRTMMESFEN+VNQVLNKARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
max]
Length = 1827
Score = 1431 bits (3705), Expect = 0.0
Identities = 694/793 (87%), Positives = 745/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRK+KCETC A+MA+CPGHFGHLELAKPM+HIGF+KTVL+I+RCVCFNCSKILA+ + K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA+RIRNPKNRLKKIL+ACK+KSKCEGGDEID GQDT+EPVKKSRGGCGAQQPK+T+
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YKA +PEPVERKQ LSAE+VL +LKRI+DEDC+ LGLNP++AR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L+RYS+WH E E+G ITPGDT VRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM I++TI+ AK +V +LIR AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
gi|561031277|gb|ESW29856.1| hypothetical protein
PHAVU_002G104500g [Phaseolus vulgaris]
Length = 1834
Score = 1425 bits (3689), Expect = 0.0
Identities = 691/793 (87%), Positives = 742/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRK+KCETC A+MA+CPGHFGHLELAKPM+HIGF+KTVL+I+RCVCFNCSKILA+ + K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA+RIRNPKNRLKKIL+ACK+KSKCEGGDEID GQDT+EPVKKSRGGCGAQQPK+T+
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YKA +PEPVERKQ LSAE+VL +LKRI+DEDC+ LGLNP++AR
Sbjct: 181 EGMKIIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+ IN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWTGKQVFNLIIPKPIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L+RYS+WH E E+G ITPGDT VRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM I++TI+ AK +V +LIR AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
arietinum]
Length = 1834
Score = 1425 bits (3689), Expect = 0.0
Identities = 690/793 (87%), Positives = 746/793 (94%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPKIGGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC A+MA+CPGHFG+LELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+ ++ K
Sbjct: 61 DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA+RI++PKNRL+KIL+ACK+K+KCEGGD+ID G DTEEPVKKSRGGCGAQQPK+T+
Sbjct: 121 FKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGHDTEEPVKKSRGGCGAQQPKITI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YKA +PEPVERKQ LSAE+VL +LKRI+DEDC+ LGLNP++AR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDW+ILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD+
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVP PTILKP+P+WTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPTPTILKPEPMWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L+RYS+WH E EKG ITPGDT VRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHNENEKGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM I++TI++AK +V +LIR AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKEKVKQLIREAQEKKL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
EAEPGRTMMESFENRVNQ LN+ARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
DNA-directed RNA polymerase II subunit 1-like isoform X2
[Glycine max]
Length = 1827
Score = 1424 bits (3685), Expect = 0.0
Identities = 691/793 (87%), Positives = 741/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRK+KCETC A+MA+CPGHFGHLELAKPM+HIGF+KTVL+I+RCVCFNCSKILA+ + K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA+RIRNPKNRLKKIL+ACK+KSKCEGGDEID GQDTEE VKKSRGGCGAQQPK+T+
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YKA +PEPVERKQ LSAE+VL +LKRI+DEDC+ LGLNP++AR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L+RYS+WH E E+G ITPGDT VRIEKGELL+GTLCKKTLG+ SG LIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM I++TI+ AK +V +LIR A EK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
EAEPGR+MM+SFENRVNQ LN+ARDDAG+SAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 1419 bits (3673), Expect = 0.0
Identities = 690/793 (87%), Positives = 738/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MDLRFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVL+I+R VCFNCSKIL + E+PK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA+RI+NPKNRL+KIL+ACK+K+KCEGGDEID GQD+++PVKKSRGGCGAQQPK+++
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK+ A+YKA +PEPVERKQ L+AE+VL ILKRITDEDCK LGLNP++AR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L R SAWH E E G ITPGDT VRIEKGELLSGTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM KI+ETI+ AKNEV LI+ AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 1419 bits (3673), Expect = 0.0
Identities = 690/793 (87%), Positives = 738/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MDLRFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVL+I+R VCFNCSKIL + E+PK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA+RI+NPKNRL+KIL+ACK+K+KCEGGDEID GQD+++PVKKSRGGCGAQQPK+++
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK+ A+YKA +PEPVERKQ L+AE+VL ILKRITDEDCK LGLNP++AR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L R SAWH E E G ITPGDT VRIEKGELLSGTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM KI+ETI+ AKNEV LI+ AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 1417 bits (3668), Expect = 0.0
Identities = 705/841 (83%), Positives = 749/841 (89%), Gaps = 48/841 (5%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD+RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAE----- 384
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADELTEN 120
Query: 385 -------------------------AEEPKFKQAMRIRNPKNRLKKILEACKSKSKCEGG 489
+E+ KFKQA +IRNPKNRLKKIL+ACK+KSKCEGG
Sbjct: 121 VKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKNRLKKILDACKNKSKCEGG 180
Query: 490 DEIDGHGQDTEEPVKKSRGGCGAQQPKLTLDGMKLVADYKAXXXXXXXXXXMPEPVERKQ 669
DEI+ D++EPVKKSRGGCGAQQPKLT++GMK++A+YK +PEPVERKQ
Sbjct: 181 DEIETQALDSDEPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKNDDPEQLPEPVERKQ 240
Query: 670 ILSAEKVLSILKRITDEDCKTLGLNPQFARPDWMILQVLXXXXXXXXXSVMMDTSSRSE- 846
LSAE+VL++LKRI+DEDC LGLNP++ARPDWMILQVL SVMMDTSSRSE
Sbjct: 241 QLSAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEA 300
Query: 847 -----------------DDLTHQLAMIIRHNENLKRQERNGAPAHIISEFAQLLQFHVAT 975
DDLTHQLAMIIRHNENL+RQERNGAPAHIISEFAQLLQFHVAT
Sbjct: 301 SLSVLVNDRLKLSMWLWDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHVAT 360
Query: 976 YFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 1155
YFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID
Sbjct: 361 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 420
Query: 1156 QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 1335
+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLK
Sbjct: 421 ELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLK 480
Query: 1336 KSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 1515
KSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN
Sbjct: 481 KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 540
Query: 1516 ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDT 1695
ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDT
Sbjct: 541 ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 600
Query: 1696 FIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQINLLRYSAWHQEGE 1875
FI+KDVFMNILMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIP+QINLLR SAWH E E
Sbjct: 601 FIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESE 660
Query: 1876 KGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVN 2055
GFITPGDTQVRIEKGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVN
Sbjct: 661 TGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 720
Query: 2056 YWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQLEAEPGRTMMESF 2235
YWLLQN FS+GIGDTIAD TM KI+ETI+KAKNEV ELIRAAQE+QLEAEPGRTMMESF
Sbjct: 721 YWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESF 780
Query: 2236 ENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 2415
ENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR
Sbjct: 781 ENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 840
Query: 2416 I 2418
I
Sbjct: 841 I 841
>ref|XP_006282990.1| hypothetical protein CARUB_v10003976mg [Capsella rubella]
gi|482551695|gb|EOA15888.1| hypothetical protein
CARUB_v10003976mg [Capsella rubella]
Length = 1838
Score = 1417 bits (3667), Expect = 0.0
Identities = 683/794 (86%), Positives = 739/794 (93%), Gaps = 1/794 (0%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD RFPFSPAEV+KVR VQFGILSPDEIRQMSV+H+EHSETTE+GKPK+GGLSD RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRK+KCETCMANMA+CPGHFGHLELAKPMYH+GF+KTVLSI+RCVCFNCSKILA+ EE K
Sbjct: 61 DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDG-HGQDTEEPVKKSRGGCGAQQPKLT 576
FKQAM+I+NPKNRLKKIL+ACK+K+KC+GGDEID H QDTEEPVKKSRGGCGAQQPKLT
Sbjct: 121 FKQAMKIKNPKNRLKKILDACKNKTKCDGGDEIDDVHSQDTEEPVKKSRGGCGAQQPKLT 180
Query: 577 LDGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFA 756
++GMK++A+YK +PEP ERKQ L A++VLS+LKRI+DEDC+ LG NP+FA
Sbjct: 181 IEGMKMIAEYKITRKKTDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKFA 240
Query: 757 RPDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHII 936
RPDWMIL+VL SVMMD +SRSEDDLTHQLAMIIRHNENLKRQE+NGAPAHII
Sbjct: 241 RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300
Query: 937 SEFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 1116
SEF QLLQFH+ATYFDN+LPGQPRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301 SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
Query: 1117 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 1296
RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420
Query: 1297 RDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 1476
RDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYS
Sbjct: 421 RDDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480
Query: 1477 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 1656
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 481 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540
Query: 1657 TLLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQI 1836
TLLGCRKITKRDTFI+KDVFMN LMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QI
Sbjct: 541 TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600
Query: 1837 NLLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDA 2016
NLLRYSAWH + E GFITPGDTQVRIE+GELL+GTLCKK LG+S+GSL+HVIWEEVGPDA
Sbjct: 601 NLLRYSAWHSDSETGFITPGDTQVRIERGELLAGTLCKKALGTSNGSLVHVIWEEVGPDA 660
Query: 2017 ARKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQ 2196
ARKFLGHTQWLVNYWLLQN F++GIGDTIAD TM KI+ETI+ AK V +LIR QEK+
Sbjct: 661 ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKK 720
Query: 2197 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQM 2376
L+ EPGRTM E+FENRVNQVLNKARDDAGSSAQKSLAE+NNLKAMVTAGSKGSFINISQM
Sbjct: 721 LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780
Query: 2377 TACVGQQNVEGKRI 2418
TACVGQQNVEGKRI
Sbjct: 781 TACVGQQNVEGKRI 794
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 1416 bits (3666), Expect = 0.0
Identities = 687/793 (86%), Positives = 740/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD+RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IE SETTERGKPK GGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCSKILA+ E+ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA++I+NPKNRLKKIL+ACK+K+KCEGGD+ID H QDT+EPVKKSRGGCGAQQP++T+
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YKA +PEPVERKQ L+AE+VL +LKRI+D+DC+ LG NP++AR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLK+QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVPAP ILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L+R +AWH + E+G ITPGDT VRIEKGELLSGT+CKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQN FS+GIGDTIAD TM KI+ETI+ AKN V ELIR AQ K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
E +PGRTMMESFEN VNQVLN+ARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 1415 bits (3663), Expect = 0.0
Identities = 687/793 (86%), Positives = 739/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD RFP+SPAEVAKV FVQFGILSPDEIRQMSV+ IEH+ET ERGKPK GGLSDPRLGTI
Sbjct: 1 MDARFPYSPAEVAKVEFVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRK+KCETCMA MA+CPGHFGHLELAKPM+HIGFIKTVLSI+RCVCFNCSKILA+ +E K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA++IRNPKNRLK+I +ACKSK C GGD++D QDT+EP+KK RGGCGAQQP +T+
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEPIKK-RGGCGAQQPNITV 179
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
DGMK+VA++KA +PEPVERKQILSAE+VL++LKRI+DEDC LGLNP++AR
Sbjct: 180 DGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYAR 239
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHII+
Sbjct: 240 PDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT 299
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 300 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 359
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 360 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 419
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
+DGQRLDLRY+KKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 420 EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 479
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 539
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDT I+KDVFMNILMWW+DFDGK+PAPTILKP+P+WTGKQVFNLIIP+QIN
Sbjct: 540 LLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQIN 599
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L+R+SAWH E EKGFITPGDT VRIEKGELLSGTLCKK+LG+ SGSLIHVIWEEVGPDAA
Sbjct: 600 LIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAA 659
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQN FS+GIGDTIAD TM I++TI+KAKN V ELI+ A EKQL
Sbjct: 660 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQL 719
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQ SL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 720 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMT 779
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 780 ACVGQQNVEGKRI 792
>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
[Citrus sinensis]
Length = 1963
Score = 1414 bits (3661), Expect = 0.0
Identities = 688/793 (86%), Positives = 739/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCSKILA+ ++ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA++IRNPKNRLKKIL+ACK+K+KCEGGDEID GQD EEP+KK++GGCGAQQPKLT+
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YKA +PEPVERKQ L+AE+VL +LKRI+DEDC+ LGLNP++AR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM I++TI+KAKN V LI+ AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
[Citrus sinensis]
Length = 1853
Score = 1414 bits (3661), Expect = 0.0
Identities = 688/793 (86%), Positives = 739/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCSKILA+ ++ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA++IRNPKNRLKKIL+ACK+K+KCEGGDEID GQD EEP+KK++GGCGAQQPKLT+
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YKA +PEPVERKQ L+AE+VL +LKRI+DEDC+ LGLNP++AR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM I++TI+KAKN V LI+ AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
[Citrus sinensis]
Length = 1790
Score = 1414 bits (3661), Expect = 0.0
Identities = 688/793 (86%), Positives = 739/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCSKILA+ ++ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA++IRNPKNRLKKIL+ACK+K+KCEGGDEID GQD EEP+KK++GGCGAQQPKLT+
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YKA +PEPVERKQ L+AE+VL +LKRI+DEDC+ LGLNP++AR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM I++TI+KAKN V LI+ AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793
>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Citrus sinensis] gi|568825318|ref|XP_006467028.1|
PREDICTED: DNA-directed RNA polymerase II subunit 1-like
isoform X2 [Citrus sinensis]
Length = 1860
Score = 1414 bits (3661), Expect = 0.0
Identities = 688/793 (86%), Positives = 739/793 (93%)
Frame = +1
Query: 40 MDLRFPFSPAEVAKVRFVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 219
MD RFP+SPAEVAKVR VQFGILSPDEIRQMSVV IEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 220 DRKMKCETCMANMADCPGHFGHLELAKPMYHIGFIKTVLSILRCVCFNCSKILAEAEEPK 399
DRKMKCETC ANMA+CPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCSKILA+ ++ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 400 FKQAMRIRNPKNRLKKILEACKSKSKCEGGDEIDGHGQDTEEPVKKSRGGCGAQQPKLTL 579
FKQA++IRNPKNRLKKIL+ACK+K+KCEGGDEID GQD EEP+KK++GGCGAQQPKLT+
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 580 DGMKLVADYKAXXXXXXXXXXMPEPVERKQILSAEKVLSILKRITDEDCKTLGLNPQFAR 759
+GMK++A+YKA +PEPVERKQ L+AE+VL +LKRI+DEDC+ LGLNP++AR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 760 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 939
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 940 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1119
EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1120 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 1299
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1300 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1479
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1659
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1660 LLGCRKITKRDTFIDKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN 1839
LLGCRKITKRDTFI+KDVFMNILMWWEDFDGKVP PTILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1840 LLRYSAWHQEGEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 2019
L R +AWH + +KG +T GDT VRIEKGELLSGTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2020 RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQL 2199
RKFLGHTQWLVNYWLLQNAFS+GIGDTIAD TM I++TI+KAKN V LI+ AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 2200 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT 2379
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2380 ACVGQQNVEGKRI 2418
ACVGQQNVEGKRI
Sbjct: 781 ACVGQQNVEGKRI 793