BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00026364
         (1658 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]   947   0.0  
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...   808   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    783   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     783   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     782   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    781   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   776   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   776   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   762   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   757   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...   754   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   752   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   739   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   736   0.0  
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   736   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   736   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   729   0.0  
gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlise...   727   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   725   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       719   0.0  

>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score =  947 bits (2448), Expect = 0.0
 Identities = 460/551 (83%), Positives = 505/551 (91%), Gaps = 2/551 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AK+L DYLED VGLVWRCRVKTSSTPQDSYPN+EI+TE+VQRK EYEKVEPHAFVHFA+A
Sbjct: 25   AKLLSDYLEDNVGLVWRCRVKTSSTPQDSYPNYEIDTENVQRKGEYEKVEPHAFVHFAVA 84

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +S+A A++LS +G L+LG  I+KV  GPQNPYRL E RRTTTP+K+PGV++EIG ++SRD
Sbjct: 85   QSSASAMKLSGAGDLVLGRHILKVGLGPQNPYRLRERRRTTTPYKVPGVTVEIGAMKSRD 144

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            EFVVGWRGP+TG DFLVDPFNGTCQI FT+DTAFSI+GEARPAVIKCNFK+EFVPREIN+
Sbjct: 145  EFVVGWRGPRTGLDFLVDPFNGTCQILFTKDTAFSIKGEARPAVIKCNFKMEFVPREINQ 204

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            IKRYKDF+S+V+L QLAS P LYYRTADDDIEESVP+DLLDDDDPWIRTTDFVPSGAIGR
Sbjct: 205  IKRYKDFSSVVVLFQLASSPLLYYRTADDDIEESVPFDLLDDDDPWIRTTDFVPSGAIGR 264

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI--ERLRVQDEPDFGVPMPDPFFCFQY 894
            SNTYRISVRPR+  QLEKALG+LQ RRVP       ERLRVQDEPDFGVPM DPFFCFQY
Sbjct: 265  SNTYRISVRPRHLSQLEKALGYLQNRRVPVENGSPQERLRVQDEPDFGVPMADPFFCFQY 324

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
            KEGL+FKVMFMVNAVVHKGIINQHQ S  FFDLLR Q EE NLVALKHIYSYKRP YDA 
Sbjct: 325  KEGLNFKVMFMVNAVVHKGIINQHQTSKQFFDLLRSQPEELNLVALKHIYSYKRPVYDAY 384

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            RALD+V KWL+KNPKLLQRP+QMDDIVEVRRL+ITPSKAYCLPPEVELSNRVLR Y++IS
Sbjct: 385  RALDSVTKWLIKNPKLLQRPDQMDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKNIS 444

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTFMDEAMQTLNKNVLTYYAAPIVRE+T NL+PQ+TTMF+RVRDILY+GFYLCGR
Sbjct: 445  DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREITSNLNPQRTTMFKRVRDILYQGFYLCGR 504

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            +YSFLAFSSNQLRDRSAWFFAED+ T+V  IK WMGKFTNRNVAKCAARMGQCFSSTYAT
Sbjct: 505  RYSFLAFSSNQLRDRSAWFFAEDRKTSVVCIKTWMGKFTNRNVAKCAARMGQCFSSTYAT 564

Query: 1615 VEVPPSQANHK 1647
            VEVP +QAN K
Sbjct: 565  VEVPSAQANSK 575


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score =  808 bits (2087), Expect = 0.0
 Identities = 381/554 (68%), Positives = 461/554 (83%), Gaps = 2/554 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML+DY ED +GLVWRCR+KTSSTP +SYPN+EI+ +S ++  +Y K++P+AFVHF +A
Sbjct: 26   AKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEIDIDSAKQSDDYVKIQPYAFVHFVVA 85

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +SA +A+E +  G L    +++KVS GPQNPYRLSE RRTTTP+K+    +EIG LRSR+
Sbjct: 86   ESANKAVEAASRGDLRFAGKLLKVSLGPQNPYRLSERRRTTTPYKLSDAFVEIGSLRSRE 145

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            E VVGWRGP++G DFLVDPF+GTC++H  RDTAF  +GEAR A+IKC+F+IEF PREI E
Sbjct: 146  ELVVGWRGPRSGVDFLVDPFSGTCKLHIKRDTAFCFKGEARSAIIKCDFRIEFFPREIIE 205

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            IK Y+DF+S++IL+QLAS P +YYRTADDDIEE    DLLDDDDPWIRTTDF   GA GR
Sbjct: 206  IKHYRDFSSLIILIQLASSPLIYYRTADDDIEEPATCDLLDDDDPWIRTTDFTSGGAFGR 265

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDI--ERLRVQDEPDFGVPMPDPFFCFQY 894
             NTYRISVRP N   L KAL +L++RRVP + +   +RL VQDEPDFG+P+ DPF C QY
Sbjct: 266  CNTYRISVRPHNGPHLLKALDYLRKRRVPVLDERTRQRLVVQDEPDFGMPVLDPFLCIQY 325

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
            KEG+SFKVMF++NAV+HKGIINQHQ+S+   D+ RRQ E+ N VALKH+ SYKRP YDA 
Sbjct: 326  KEGISFKVMFLLNAVMHKGIINQHQISEQLLDMFRRQPEDVNTVALKHMCSYKRPVYDAF 385

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            +A++ VQ+WL+KNPKLL+RP  MDDIVEVRRLIITP+KAYCLPPEVELSNRVLR Y++++
Sbjct: 386  KAVETVQRWLLKNPKLLERPRGMDDIVEVRRLIITPAKAYCLPPEVELSNRVLRHYKAVA 445

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTF DEAM TLNKN LTYY  P+VR +T + +PQ+TT+F+R++DIL+ GFYLCGR
Sbjct: 446  DRFLRVTFTDEAMSTLNKNALTYYVGPMVRGITSSSNPQRTTIFKRIKDILHSGFYLCGR 505

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            KYSFLAFSSNQLRDRSAWFFAEDK   V +IKNWMG+FTNRNVAKCAARMGQCFSSTYAT
Sbjct: 506  KYSFLAFSSNQLRDRSAWFFAEDKDIGVANIKNWMGRFTNRNVAKCAARMGQCFSSTYAT 565

Query: 1615 VEVPPSQANHKLKD 1656
            VEVP  Q N KL D
Sbjct: 566  VEVPSKQVNSKLPD 579


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  783 bits (2023), Expect = 0.0
 Identities = 382/554 (68%), Positives = 454/554 (81%), Gaps = 2/554 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML +YLE++VG VWRCR+K S+TP DSYP ++I+ E V R  +YEKV PHAFVHFA +
Sbjct: 26   AKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDIDAERVHRMKDYEKVVPHAFVHFASS 85

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +SA  AL  +    L+LG + + VS GP+NPYRL++ RRTT PFK   VS+E+GVL S+D
Sbjct: 86   ESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKD 145

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            +FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS RGEAR A+IKCNFKIEF+ REINE
Sbjct: 146  DFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINE 205

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            IK+ KDFTS+VIL QLAS P ++YRTADDDIEESV +DLLDDDD WIRTTD   SGAIGR
Sbjct: 206  IKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGR 265

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFGVPMPDPFFCFQY 894
             NTYRIS+RPRN    EKA+ +   RRVP V    R  LRV+DEPDFGV M DPFFCFQ 
Sbjct: 266  CNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ- 324

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
             EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR + EE NL ALKH++SYK P  DA+
Sbjct: 325  NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNLAALKHMFSYKWPVNDAI 384

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            + L  +QKWL+KNPKLL+R  ++DDIVEVRRL+ITP+KAYCLPP VELSNRVLR Y+ ++
Sbjct: 385  QKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVA 444

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQRV+ IL +GF+LCGR
Sbjct: 445  DRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGR 504

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            KYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAARMGQCFSSTYAT
Sbjct: 505  KYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYAT 564

Query: 1615 VEVPPSQANHKLKD 1656
            VEVP S+ N +L D
Sbjct: 565  VEVPSSEVNSELPD 578


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  783 bits (2023), Expect = 0.0
 Identities = 383/554 (69%), Positives = 453/554 (81%), Gaps = 2/554 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML +YLE++VG VWRCR+K SSTP DSYP F+++ E VQR  +YEKV PHAFVHFA +
Sbjct: 26   AKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDVDAERVQRMKDYEKVVPHAFVHFASS 85

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +SA  AL  +    L+LG + + VS GP+NPYRL++ RRTT PFK   VSIE+GVL S+D
Sbjct: 86   ESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSIEMGVLVSKD 145

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            +FVVGWRGP+TG DFLVDPFNG C+I FT+DTAFS RGEAR A+IKCNFKIEF+ REINE
Sbjct: 146  DFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINE 205

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            IK+ KDFTS+VILLQLAS P ++YRTADDDIEESV +DLLDDDD WIRTTD   SGAIGR
Sbjct: 206  IKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGR 265

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFGVPMPDPFFCFQY 894
             NTYRIS+RPRN    EKA+ +    RVP V    R  LRV+DEPDFGV M DPFFCFQ 
Sbjct: 266  CNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ- 324

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
             EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR   EE NL ALKH++SYK P  DA+
Sbjct: 325  NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAI 384

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            + L  ++KWL+KNPKLL+R  ++DDIVEVRRL+ITP+KAYCLPP VELSNRVLR Y+ ++
Sbjct: 385  QKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVA 444

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQRV+ IL +GF+LCGR
Sbjct: 445  DRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGR 504

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            KYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAARMGQCFSSTYAT
Sbjct: 505  KYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYAT 564

Query: 1615 VEVPPSQANHKLKD 1656
            VEVP S+ N +L D
Sbjct: 565  VEVPSSEVNSELPD 578


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  782 bits (2020), Expect = 0.0
 Identities = 382/554 (68%), Positives = 451/554 (81%), Gaps = 2/554 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML +YLE++VG VWRCR+K SSTP DSYP ++I+ E VQR   YEKV PHAFVHFA +
Sbjct: 26   AKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDIDAEKVQRMNNYEKVVPHAFVHFASS 85

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +SA  AL  +    L+LG + + VS GP+NPYRL++ RRTT PFK   VS+E+GVL S+D
Sbjct: 86   ESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKD 145

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            +FVVGWRGP+TG DFLVDPFNGTC+I FT+DTAFS RGEAR A+IKCNFKIEF+ REINE
Sbjct: 146  DFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINE 205

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            IK+ KDFTS+VIL QLAS P ++YRTADDDIEESV +DLLDDDD WIRTTD   SGAIGR
Sbjct: 206  IKKCKDFTSLVILFQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGR 265

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFGVPMPDPFFCFQY 894
             NTYRIS+RPRN    EKA+ +   RRVP V    R  LRV+DEPDFGV M DPFFCFQ 
Sbjct: 266  CNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ- 324

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
             EG+SF+V+F+VNAV+HKGI+NQHQM++ FF LLR   EE N  ALKH++SYK P  DA+
Sbjct: 325  NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEEVNSAALKHMFSYKWPVNDAI 384

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            + L  +QKWL+KNPKLL R  ++DDIVEVRRL+ITP+KAYCLPP VELSNRVLR Y+ ++
Sbjct: 385  QKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVA 444

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQRV+ IL KGF+LCGR
Sbjct: 445  DRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGR 504

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            KYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAARMGQCFSSTYAT
Sbjct: 505  KYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYAT 564

Query: 1615 VEVPPSQANHKLKD 1656
            VEVP S+ N +L D
Sbjct: 565  VEVPSSEVNSELPD 578


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  781 bits (2016), Expect = 0.0
 Identities = 382/554 (68%), Positives = 450/554 (81%), Gaps = 2/554 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML +YLE++VG VWRCR+K SSTP DSYP ++I+ E VQR   YEKV PHAFVHFA +
Sbjct: 26   AKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDIDAEKVQRMNNYEKVVPHAFVHFASS 85

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +SA  AL  +    L+LG + + VS GP+NPYRL++ RRTT PFK   VS+E+GVL S+D
Sbjct: 86   ESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKD 145

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            +FVVGWRGP+TG DF VDPFNGTC+I FT+DTAFS RGEAR A+IKCNFKIEF+ REINE
Sbjct: 146  DFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFMVREINE 205

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            IK+ KDFTS+VILLQLAS P ++YRTADDDIEESV +DLLDDDD WIRTTD   SGAIGR
Sbjct: 206  IKKCKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGR 265

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFGVPMPDPFFCFQY 894
             NTYRIS+RPRN    EKA+ +    RVP V    R  LRV+DEPDFGV M DPFFCFQ 
Sbjct: 266  CNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ- 324

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
             EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR + EE N  ALKH++SYK P  DA+
Sbjct: 325  NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNSAALKHMFSYKWPVNDAI 384

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            + L  +QKWL+KNPKLL R  ++DDIVEVRRL+ITP+KAYCLPP VELSNRVLR Y+ ++
Sbjct: 385  QKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVA 444

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQRV+ IL KGF+LCGR
Sbjct: 445  DRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGR 504

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            KYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAARMGQCFSSTYAT
Sbjct: 505  KYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYAT 564

Query: 1615 VEVPPSQANHKLKD 1656
            VEVP  + N +L D
Sbjct: 565  VEVPSREVNSELPD 578


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  776 bits (2005), Expect = 0.0
 Identities = 380/554 (68%), Positives = 448/554 (80%), Gaps = 2/554 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML +YLE++VG VWRCR+K SSTP DSYP ++I+ E VQR   YEKV PHAFVHFA +
Sbjct: 26   AKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDIDAERVQRMNNYEKVVPHAFVHFASS 85

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +SA  AL  +    L+LG + + VS GP+NPYRL++ RRTT PFK   VS+E+GVL S+ 
Sbjct: 86   ESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKH 145

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            +FVVGWRGP+TG DFLVDPFNGTC+I FT+DT FS RGEAR A+IKCNFKIEF+ REINE
Sbjct: 146  DFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFSFRGEARHAIIKCNFKIEFLVREINE 205

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            IK+ KDF S+VILLQLAS P ++YRTADDDIEESV +DLLDDDD WIRTTD   SGAIGR
Sbjct: 206  IKKCKDFMSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGR 265

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFGVPMPDPFFCFQY 894
             NTYRIS+RPRN    EKA+ +    RVP V    R  LRV+DEPDFGV M DPFFCFQ 
Sbjct: 266  CNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ- 324

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
             EG+SFKV+F+ NAV+HKGI+NQHQM + FF LLR   EE NL ALKH++SYK P  DA+
Sbjct: 325  NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAI 384

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            + L  +QKWL+KNPKLL+R  ++DDIVEVRRL+ITP+KAYCLPP VELSNRVLR Y+ ++
Sbjct: 385  QKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVA 444

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQRV+ IL KGF+LCGR
Sbjct: 445  DRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGR 504

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            KYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAARMGQCFSSTYAT
Sbjct: 505  KYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYAT 564

Query: 1615 VEVPPSQANHKLKD 1656
            VEVP S+ N +L D
Sbjct: 565  VEVPSSEVNSELPD 578


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  776 bits (2003), Expect = 0.0
 Identities = 377/554 (68%), Positives = 451/554 (81%), Gaps = 2/554 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML +YLE++VG VWRCR+K S+TP DSYP ++++   V R  +YEKV PHAFVHFA +
Sbjct: 26   AKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDVDAARVHRMKDYEKVVPHAFVHFASS 85

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +SA  AL  +    L+LG + + VS GP+NPYRL++ RRTT PFK   VS+E+GVL S+D
Sbjct: 86   ESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKD 145

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            +FVVGWRGP+TG DF VDPFNG C+I FT+DTAFS RGEA+ A+IKCNFKIEF+ REINE
Sbjct: 146  DFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFSFRGEAKHAIIKCNFKIEFMVREINE 205

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            IK++KDFTS+VILLQLAS P ++YRTADDDIEESV +DLLDDDD WIRTTD   SGAIGR
Sbjct: 206  IKKFKDFTSLVILLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGR 265

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFGVPMPDPFFCFQY 894
             NTYRIS+RPRN    EKA+ +    RVP V    R  LRV+DEPDFGV M DPFFCFQ 
Sbjct: 266  CNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ- 324

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
             EG+SFKVMF+VNAV+HKGI+NQHQM++ FF LLR   EE NL ALKH++SYK P  DA+
Sbjct: 325  NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAI 384

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            + L  +QKWL+KNPKLL+R  ++DDIVEVRRL+ITP+KAYCLPP VELSNRVLR Y+ ++
Sbjct: 385  QKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVA 444

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T N +PQ+T +FQRV+ IL +GF+LCGR
Sbjct: 445  DRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGR 504

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            KYSFLAFS+NQLRDRSAWFFAED    V  I +WMG+F+NRNVAKCAARMGQCFSSTYAT
Sbjct: 505  KYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYAT 564

Query: 1615 VEVPPSQANHKLKD 1656
            VEVP S+ N +L D
Sbjct: 565  VEVPSSEVNSELPD 578


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score =  762 bits (1968), Expect = 0.0
 Identities = 373/554 (67%), Positives = 443/554 (79%), Gaps = 2/554 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML + LED+VG VWRCR+KTSSTP DSYP ++I+ E+V+R   Y KVEPHAFVHFA +
Sbjct: 26   AKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDIDVENVRRMNNYIKVEPHAFVHFASS 85

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +SA  AL  +    L L  + +KVS GP+NP+ +++ RRT  PFK   V +EIGVL S D
Sbjct: 86   ESAQNALAAARRDELFLEEKPLKVSLGPENPFNMNKRRRTIMPFKFSDVGVEIGVLVSND 145

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            +FVVGWRGP +G +FLVDPFNGTC+I FTRDTAF  +GE + AVIKCNFKIEF+ REINE
Sbjct: 146  DFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFCFKGEGKHAVIKCNFKIEFLLREINE 205

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            I   KDF S+V+LLQL S P ++YRTADDDIEESV +DLLDDDD WIRTTD   SGAIGR
Sbjct: 206  INECKDFASLVLLLQLTSSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITCSGAIGR 265

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFGVPMPDPFFCFQY 894
             NTYRIS+RPRN   L+KA+ + +E RVP V    R  LRV+DEPDFGV + +PFFCFQ 
Sbjct: 266  FNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGNRQMLRVRDEPDFGVSLSEPFFCFQN 325

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
             EG+SFKV+F+VNAV+ KGI+NQHQM+  FF LLR+  E  NL ALKHI+SYKRP  DA+
Sbjct: 326  HEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLRKHQEGVNLAALKHIFSYKRPVNDAI 385

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            + L +VQKWL KNP LL+R  Q+DD+VEVRRL+ITP+KAYCLPP VELSNRVLRKY+ +S
Sbjct: 386  QKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHVS 445

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTFMDE M+ LN+NVLTYYAA IVRE+T + +PQ+T +FQRV+ IL KGFYLCGR
Sbjct: 446  DRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSSSNPQRTGIFQRVKSILSKGFYLCGR 505

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            +YSFLAFS+NQLRDRSAWFFAE     V +I NWMGKF NRNVAKCAARMGQCFSSTYAT
Sbjct: 506  RYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWMGKFGNRNVAKCAARMGQCFSSTYAT 565

Query: 1615 VEVPPSQANHKLKD 1656
            VEV PS+ N +L D
Sbjct: 566  VEVLPSEVNSELPD 579


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  757 bits (1954), Expect = 0.0
 Identities = 363/545 (66%), Positives = 445/545 (81%), Gaps = 3/545 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRKTEYEKVEPHAFVHFAL 177
            A  L  YLED +G V RCR+KTSSTP +SYP+FEI +T  ++R  +Y+KVEPHAFVHF  
Sbjct: 26   ATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKIERTEDYKKVEPHAFVHFVS 85

Query: 178  AKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSR 357
             ++A  AL+ +    L L  + +KVS GP+ P+ L++ RRTT PFK P V +EIG+L SR
Sbjct: 86   PEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRTTFPFKFPDVRLEIGILVSR 145

Query: 358  DEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREIN 537
            DE+  GWRGP +G DFLVDPF+GTC+  FT+DTAFS +G  + AVIKCNFK+EF+ REIN
Sbjct: 146  DEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMPKHAVIKCNFKVEFLVREIN 205

Query: 538  EIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIG 717
            E+++ +D +S+++LLQL+S P +YYRTADDDIEE+VP+DLLDDDDPWIRTTDF  SGAIG
Sbjct: 206  EVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIG 265

Query: 718  RSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER--LRVQDEPDFGVPMPDPFFCFQ 891
            R N+YRIS+ PR   +L+KA+ +L+ RRV  + D  +  LRV+DEPDFG+PM DPFFC Q
Sbjct: 266  RCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQ 325

Query: 892  YKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDA 1071
            +KEG+ F+VMF+VNAV+HKGIINQHQ+SD FFDLLR Q ++ N+ ALKHI SY+ P +DA
Sbjct: 326  HKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDA 385

Query: 1072 LRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSI 1251
             + L  V KWL+KNPKLL+ P+++DDIVEVRRL+ITPSKAYCLPPEVELSNRVLR Y+ +
Sbjct: 386  YQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEV 445

Query: 1252 SDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCG 1431
            SDRFLRVTFMDE MQT+N NVL YY APIV+ +T N  PQKT +F+RV+ IL  GFYLCG
Sbjct: 446  SDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCG 505

Query: 1432 RKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYA 1611
            RKYSFLAFSSNQLRDRSAWFFAEDK T+V +IK+WMGKFTNRNVAKCAARMGQCFSSTYA
Sbjct: 506  RKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYA 565

Query: 1612 TVEVP 1626
            TVEVP
Sbjct: 566  TVEVP 570


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score =  754 bits (1948), Expect = 0.0
 Identities = 369/553 (66%), Positives = 441/553 (79%), Gaps = 1/553 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML +YLE++VG VWRCR+KTSSTP DSYP ++I+ E V+R   Y KVEPHAFVHFA +
Sbjct: 26   AKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDIDVEKVRRMNNYIKVEPHAFVHFASS 85

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            +SA  AL  +    L L  + +KVS GP+N + ++E RRT  P+K   V +EIGVL S D
Sbjct: 86   ESAQNALAAARRDELFLEEKPLKVSLGPENTFNMNERRRTFMPYKFSDVGVEIGVLVSND 145

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            +FVVGWRGP +G +FLVDPFNG C+I FTRDTAF  +GE + AVIKCNFKIEF+ REINE
Sbjct: 146  DFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFCFKGEGKHAVIKCNFKIEFLLREINE 205

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            I   KDF+S+V+LLQLAS P ++YRTADDDIEESV +DLLDDDD WIRTTD   SGAIGR
Sbjct: 206  INECKDFSSLVLLLQLASSPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITFSGAIGR 265

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIER-LRVQDEPDFGVPMPDPFFCFQYK 897
             NTYR+S+RPRN    +KA+ + +E RVP V   E+ LRV++EPDFG  + +PFFCFQ  
Sbjct: 266  FNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQGEQMLRVRNEPDFGESVSEPFFCFQNH 325

Query: 898  EGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDALR 1077
            EG+SFKV+F+VNAV+HKGI+NQHQM+  FF LLR+  E  NL ALKHI+SYKRP  DA+R
Sbjct: 326  EGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRKHQEGVNLAALKHIFSYKRPVNDAIR 385

Query: 1078 ALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSISD 1257
             L +VQKWL  NP LL+R  Q+DD+VEVRRL+ITP+KAYCLPP VELSNRVLRKY+ ISD
Sbjct: 386  KLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHISD 445

Query: 1258 RFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGRK 1437
            RFLRVTFMDE M+ LN+N LTYYAA IVRE+T + +PQ+T +FQRV+ I+ KGFYLCGR+
Sbjct: 446  RFLRVTFMDEGMRNLNRNALTYYAANIVREITSSSNPQRTGIFQRVKIIVNKGFYLCGRR 505

Query: 1438 YSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYATV 1617
            YSFLAFS+NQLRDRSAWFFAE     V SI NWMGKF NRNVAKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMGKFGNRNVAKCAARMGQCFSSTYATV 565

Query: 1618 EVPPSQANHKLKD 1656
            EV PS+ N +L D
Sbjct: 566  EVLPSEVNSELPD 578


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  752 bits (1941), Expect = 0.0
 Identities = 352/553 (63%), Positives = 447/553 (80%), Gaps = 1/553 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRKTEYEKVEPHAFVHFAL 177
            AK L++YLE ++GLVWRCR+KTS TP +SYPNFEI +   + R  +Y +VEPHAFVHFAL
Sbjct: 26   AKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTEDYRRVEPHAFVHFAL 85

Query: 178  AKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSR 357
             +SA  A++ ++   L L ++ +K S GP+NP+ L++ RR TTPFK+ GV +EIG L SR
Sbjct: 86   PQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFKLSGVGVEIGTLVSR 145

Query: 358  DEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREIN 537
            DEF VGWRGP TG DFLVDPF+GTC+  F+R+TAFS +  A  AVIKC+FK+EF+ R+IN
Sbjct: 146  DEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFKVEFLVRDIN 205

Query: 538  EIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIG 717
            EIK+Y + + +V+LLQLAS P+++YRTADDDIE SVP+DLLDDDDPWIRTTDF  SGAIG
Sbjct: 206  EIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIG 265

Query: 718  RSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVPMPDPFFCFQYK 897
            R ++YR+S+ PR+  +L KA+ FL+ERRV        +R++DEPDFG+PM DPFFC  +K
Sbjct: 266  RCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHK 325

Query: 898  EGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDALR 1077
            EG++F V+F+VNAV+HKGI NQHQ+S++FFDLLR Q  E N+ ALKHIY Y+RP +DA +
Sbjct: 326  EGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYK 385

Query: 1078 ALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSISD 1257
             L   Q+WL+KNPK  +  +++DDI E+RRL+ITP+KAYCLPPEVELSNRVLRKY+ ++D
Sbjct: 386  KLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVAD 445

Query: 1258 RFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGRK 1437
            RFLRVTFMDE +QT+N N L Y+AAPIVR +T    PQKT +F+RVR IL +GFYLCGR+
Sbjct: 446  RFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRR 505

Query: 1438 YSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYATV 1617
            YSFLAFSSNQLRDRSAWFFAED++  V +IK+WMGKFTN+N+AKCAARMGQCFSSTYAT+
Sbjct: 506  YSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATI 565

Query: 1618 EVPPSQANHKLKD 1656
            EVPP + N  L D
Sbjct: 566  EVPPEEVNSDLPD 578


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  739 bits (1907), Expect = 0.0
 Identities = 354/553 (64%), Positives = 442/553 (79%), Gaps = 1/553 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRKTEYEKVEPHAFVHFAL 177
            AK LM+Y +++VG+VWRCR+KTS TP +SYPNFEI ++  +QR  +Y+KVEPHAFVHFA 
Sbjct: 26   AKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVIQRTDDYKKVEPHAFVHFAS 85

Query: 178  AKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSR 357
              +A  A++ +    L+  +Q++KVS GP+NPY L+  RR TTPFK+  V ++IG + SR
Sbjct: 86   PLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRNTTPFKLSDVCLDIGGMVSR 145

Query: 358  DEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREIN 537
            DEF VGWRGP  G DFLVDPF+GTC+  F+RDTAFS +G    AVIKC+FK+EF+ R+IN
Sbjct: 146  DEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTTEYAVIKCDFKVEFLVRDIN 205

Query: 538  EIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIG 717
            EIK+Y + + +V+ LQLAS P+++YRTADD+IEESVP+DLLDDDD WIRTTDF PSGAIG
Sbjct: 206  EIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLLDDDDQWIRTTDFTPSGAIG 265

Query: 718  RSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVPMPDPFFCFQYK 897
            R NTYR+ +RPR+  +L+KAL +L+E+RVP       LR+ DEPDFG  M DPF+C  YK
Sbjct: 266  RCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRISDEPDFGRSMSDPFYCIDYK 325

Query: 898  EGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDALR 1077
            EG+ F++MF+VNAV+HKGI NQHQ+S++FF+LLR Q  E N+ ALKHIYSY+RP +DA +
Sbjct: 326  EGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVNVAALKHIYSYRRPVFDAYK 385

Query: 1078 ALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSISD 1257
             L  V  WL++NP L + P+Q+DDIVE+RRL+ITP+KA+CL PEVELSNRVLRKY+ ++D
Sbjct: 386  RLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCLLPEVELSNRVLRKYKEVAD 445

Query: 1258 RFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGRK 1437
            RFLRVTFMDE MQT+N NVLTYYAA IVR+VT     QKT +F+RVR IL  GFYLCGRK
Sbjct: 446  RFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTGVFKRVRSILTDGFYLCGRK 505

Query: 1438 YSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYATV 1617
            YSFLAFS+NQLRD SAWFFAED  T+V  I  WMGKFTNRN+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRNIAKCAARMGQCFSSTYATV 565

Query: 1618 EVPPSQANHKLKD 1656
            EVP ++ N  L D
Sbjct: 566  EVPSTEVNPFLPD 578


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  736 bits (1901), Expect = 0.0
 Identities = 346/556 (62%), Positives = 449/556 (80%), Gaps = 4/556 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRKTEYEKVEPHAFVHFAL 177
            AK L++YL+  +GLVWRCR+KTS TP +SYPNFEI +   ++R  +Y +V PHAFVHFAL
Sbjct: 26   AKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIERTEDYRRVVPHAFVHFAL 85

Query: 178  AKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSR 357
             +SA  A+  S    L L ++ +KVS GP+NP+ L++ RRTTTPFK+  V  EIG L SR
Sbjct: 86   PQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTTTPFKLSDVGFEIGNLVSR 145

Query: 358  DEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREIN 537
            DEF VGWRGP +G DFLVDPF+GTC+  F+R+TAFS++  +  AVIKC+FK+EF+ R+IN
Sbjct: 146  DEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEHAVIKCDFKVEFLVRDIN 205

Query: 538  EIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIG 717
            EI +Y + + +V+LLQLAS P ++YRTADDDIE  VP+DLLDDDDPWIRTTDF  SGAIG
Sbjct: 206  EIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIG 265

Query: 718  RSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE---RLRVQDEPDFGVPMPDPFFCF 888
            R ++YR+S+ PR+  +L KA+ +L+ERRV  + +     R+R+ DEPDFG+PM DPFFC 
Sbjct: 266  RCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRILDEPDFGMPMSDPFFCI 325

Query: 889  QYKEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYD 1068
             +KEG++F+V+F+VNAV+HKGI NQHQ+S++FFDLLR Q+ E N+ ALKHI +Y+RP ++
Sbjct: 326  HHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHICTYRRPVFN 385

Query: 1069 ALRALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRS 1248
            A R L  VQ+WL+KNP L + P+Q+ D+VE+RRL+ITP+KAYCLPPEVELSNRVLRKY+ 
Sbjct: 386  AYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKD 445

Query: 1249 ISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLC 1428
            ++DRFLRVTFMDE +Q +N NVL YY APIVR++T N  PQKT +F+RVR IL +GFYLC
Sbjct: 446  VADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLC 505

Query: 1429 GRKYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTY 1608
            GR+YSFLAFS+NQLRD+SAWFF+E+++ +V  +K+WMGKFTNRN+AKCAARMGQCFSSTY
Sbjct: 506  GRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTY 565

Query: 1609 ATVEVPPSQANHKLKD 1656
            AT+EVPP + N  L D
Sbjct: 566  ATIEVPPEEVNSDLPD 581


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
            sinensis]
          Length = 1025

 Score =  736 bits (1899), Expect = 0.0
 Identities = 349/553 (63%), Positives = 443/553 (80%), Gaps = 1/553 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRKTEYEKVEPHAFVHFAL 177
            A  L+ YLE++VG VWRCR+KTS TP +SYP+F + NT  V++  +YEKVEPHAFVHFA+
Sbjct: 26   AAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKTDDYEKVEPHAFVHFAM 85

Query: 178  AKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSR 357
                 RA++ +    L L  Q +KVS GP+NP+RL++  RT+TPFK+P V +EIG L SR
Sbjct: 86   PTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLVSR 145

Query: 358  DEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREIN 537
            DEF V WRGP +G DFLVDPF+GTC+  FTRD AF+++     AVIKC FK+EF+ REIN
Sbjct: 146  DEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLVREIN 205

Query: 538  EIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIG 717
             +K+Y +F+ + ILLQLAS P+++YRTADDDI   VP+D+LDDDDPWIRTTDF PSGAIG
Sbjct: 206  LVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIG 265

Query: 718  RSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVPMPDPFFCFQYK 897
            R N+YRIS+  R+R +L K + +L ERRV        + +++EPDF VPM DPFFC  Y+
Sbjct: 266  RCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYE 325

Query: 898  EGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDALR 1077
            EG+SF++MF+VNAV+HKGIINQHQ+SD+FFDLLR Q+ E N+ ALKHIYSYK P +DA +
Sbjct: 326  EGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACK 385

Query: 1078 ALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSISD 1257
             L  VQ+WL+K+P+L + P+Q+DDIVEVRRL+ITP+KAYCLPPEVELSNRVLRKY+ ++D
Sbjct: 386  RLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLAD 445

Query: 1258 RFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGRK 1437
            RFLRVTFMDE +QT+N NVL+Y+ APIVR++T N   QKT +F+RVR IL  GFYLCGRK
Sbjct: 446  RFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRK 505

Query: 1438 YSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYATV 1617
            +SFLAFSS+QLRD SAWFF+ED  T+V  IK WMG+FT++N+AKCAARMGQCFSSTYATV
Sbjct: 506  FSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATV 565

Query: 1618 EVPPSQANHKLKD 1656
            EVPP++ + +L D
Sbjct: 566  EVPPTEVDPELPD 578


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score =  736 bits (1899), Expect = 0.0
 Identities = 349/553 (63%), Positives = 443/553 (80%), Gaps = 1/553 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRKTEYEKVEPHAFVHFAL 177
            A  L+ YLE++VG VWRCR+KTS TP +SYP+F + NT  V++  +YEKVEPHAFVHFA+
Sbjct: 26   AAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKTDDYEKVEPHAFVHFAM 85

Query: 178  AKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSR 357
                 RA++ +    L L  Q +KVS GP+NP+RL++  RT+TPFK+P V +EIG L SR
Sbjct: 86   PTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLVSR 145

Query: 358  DEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREIN 537
            DEF V WRGP +G DFLVDPF+GTC+  FTRD AF+++     AVIKC FK+EF+ REIN
Sbjct: 146  DEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLVREIN 205

Query: 538  EIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIG 717
             +K+Y +F+ + ILLQLAS P+++YRTADDDI   VP+D+LDDDDPWIRTTDF PSGAIG
Sbjct: 206  LVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIG 265

Query: 718  RSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVPMPDPFFCFQYK 897
            R N+YRIS+  R+R +L K + +L ERRV        + +++EPDF VPM DPFFC  Y+
Sbjct: 266  RCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIREEPDFEVPMSDPFFCIHYE 325

Query: 898  EGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDALR 1077
            EG+SF++MF+VNAV+HKGIINQHQ+SD+FFDLLR Q+ E N+ ALKHIYSYK P +DA +
Sbjct: 326  EGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACK 385

Query: 1078 ALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSISD 1257
             L  VQ+WL+K+P+L + P+Q+DDIVEVRRL+ITP+KAYCLPPEVELSNRVLRKY+ ++D
Sbjct: 386  RLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLAD 445

Query: 1258 RFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGRK 1437
            RFLRVTFMDE +QT+N NVL+Y+ APIVR++T N   QKT +F+RVR IL  GFYLCGRK
Sbjct: 446  RFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRK 505

Query: 1438 YSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYATV 1617
            +SFLAFSS+QLRD SAWFF+ED  T+V  IK WMG+FT++N+AKCAARMGQCFSSTYATV
Sbjct: 506  FSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATV 565

Query: 1618 EVPPSQANHKLKD 1656
            EVPP++ + +L D
Sbjct: 566  EVPPTEVDPELPD 578


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  729 bits (1883), Expect = 0.0
 Identities = 351/553 (63%), Positives = 435/553 (78%), Gaps = 1/553 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRKTEYEKVEPHAFVHFAL 177
            A+ L+ YL++++G VWRCR+KTS TP +SYPNFEI +T  +QR   Y +VEPHAFVHFA 
Sbjct: 26   ARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVIQRVDAYRRVEPHAFVHFAS 85

Query: 178  AKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSR 357
              SA  A   +    L    + +KVS GP+NP+ L++ RRTT PFK+  V +EIG L SR
Sbjct: 86   PDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFKLSDVHVEIGTLVSR 145

Query: 358  DEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREIN 537
            DEF+VGWRGP +G DFLVDPF+G C+  FTRDTAFS +G    AVI+C+FK+EF+ R+IN
Sbjct: 146  DEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVIRCDFKLEFLVRDIN 205

Query: 538  EIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIG 717
            EIK+Y D + +VILLQLAS P ++YRTADDDIE  VP+DLLDDDDPWIRTTDF PSGAIG
Sbjct: 206  EIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDPWIRTTDFTPSGAIG 265

Query: 718  RSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVPMPDPFFCFQYK 897
            R N+YR+S+ PR+  +L++AL FL+ERRV        L V  EP++ +PM DPFFC  ++
Sbjct: 266  RCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPLHVTAEPEYEMPMSDPFFCIHHE 325

Query: 898  EGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDALR 1077
            EG+ F +MF+VNAV+HKGI NQHQ+SD+FFDLLR Q  + N+ AL+HI SYK P +DA +
Sbjct: 326  EGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHK 385

Query: 1078 ALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSISD 1257
             L  VQ+WL+KNPKL +  +Q+DDIVE+RRL ITP++AYCLPPEVELSNRVLR+Y+ I+D
Sbjct: 386  RLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIAD 445

Query: 1258 RFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGRK 1437
            +FLRVTFMDE +QT+N N LTYY APIVR++T N   QKT +F+RV+ IL  GFYLCGRK
Sbjct: 446  QFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRK 505

Query: 1438 YSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYATV 1617
            YSFLAFSSNQLRDRSAWFFAED  T+V  I+NWMGKFTNRN+AKCAARMGQCFSSTYATV
Sbjct: 506  YSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATV 565

Query: 1618 EVPPSQANHKLKD 1656
            EVP ++A   L D
Sbjct: 566  EVPSAEAILDLPD 578


>gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlisea aurea]
          Length = 1195

 Score =  727 bits (1876), Expect = 0.0
 Identities = 351/552 (63%), Positives = 431/552 (78%), Gaps = 2/552 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEINTESVQRKTEYEKVEPHAFVHFALA 180
            AKML+D+ +  +G VWRCR+KTSS P DSYPN++I+   VQ   +YE+ + HA+VHFA+ 
Sbjct: 20   AKMLVDFFQKNIGFVWRCRLKTSSLPPDSYPNYDIDISRVQGNNDYERAKRHAYVHFAIP 79

Query: 181  KSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSRD 360
            K A  A + + SG L +G + ++V  GPQNP+R++E RRT + +K+  VS+E+G ++S++
Sbjct: 80   KCAKLAADAAASGRLTMGQKQLRVGLGPQNPHRMNERRRTISSYKLFDVSVEVGSMKSQN 139

Query: 361  EFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREINE 540
            EF VGWRGP +G DF+VDP+NGTC+I F RDTAFSI  E R  V+KCNFKIEF PREI E
Sbjct: 140  EFYVGWRGPSSGVDFIVDPYNGTCKIQFERDTAFSITDEDRLVVMKCNFKIEFTPREIIE 199

Query: 541  IKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIGR 720
            IKRY+DF S++I+LQL S P +YYRTADDDIE++VP+DLL+DDDPWIRTTDF  +GAIGR
Sbjct: 200  IKRYRDFYSLIIMLQLFSSPLIYYRTADDDIEDAVPFDLLEDDDPWIRTTDFTSTGAIGR 259

Query: 721  SNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIE--RLRVQDEPDFGVPMPDPFFCFQY 894
             NTYRISVRP +  QL KAL +L+ RRV    + +   +RV DEP FG  M DPFFC Q 
Sbjct: 260  CNTYRISVRPLSGPQLLKALDYLRLRRVKVFDEFKGKHIRVMDEPGFGTLMSDPFFCIQN 319

Query: 895  KEGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDAL 1074
             +GLSFK+ F+VNAV+H GIIN HQM++ FFDLLR Q EE  + AL H+   KRP YDA+
Sbjct: 320  VKGLSFKITFLVNAVLHSGIINYHQMTEEFFDLLRTQPEELIVPALTHLSFSKRPVYDAV 379

Query: 1075 RALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSIS 1254
            +AL  VQKWL+ NPKLL+RP + +D VEVRRLIITP++AYC+PPEVELSNRVLR YR +S
Sbjct: 380  KALKAVQKWLLGNPKLLERPMRNEDTVEVRRLIITPTRAYCIPPEVELSNRVLRNYRDLS 439

Query: 1255 DRFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGR 1434
            DRFLRVTFMDEAMQ LNKN+L +Y   I+RE   NL PQKT MF+R++DIL  GFYLCG 
Sbjct: 440  DRFLRVTFMDEAMQILNKNLLVFYPDRILREDNSNLIPQKTMMFKRIKDILMDGFYLCGM 499

Query: 1435 KYSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYAT 1614
            KYSFLA+S+ QLRDRSAWFFAED    V +IK WMGKFT+RNVAKCAARMGQCFSSTYAT
Sbjct: 500  KYSFLAYSAGQLRDRSAWFFAEDSKIKVKNIKKWMGKFTDRNVAKCAARMGQCFSSTYAT 559

Query: 1615 VEVPPSQANHKL 1650
            VEVP    N KL
Sbjct: 560  VEVPHGDVNFKL 571


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score =  725 bits (1871), Expect = 0.0
 Identities = 355/553 (64%), Positives = 434/553 (78%), Gaps = 1/553 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFEI-NTESVQRKTEYEKVEPHAFVHFAL 177
            A+ LM YLE++VGLVWRCR+KTS TP +SYPNFEI +T  +QRK  Y+KVEPHAFVHFA 
Sbjct: 26   ARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQRKDNYKKVEPHAFVHFAS 85

Query: 178  AKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSR 357
             ++   A++ +    L   +Q++KVS GP+NPY L+  RR TTPFK+P VS+EIG L S 
Sbjct: 86   PQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDTTPFKLPDVSLEIGTLASC 145

Query: 358  DEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREIN 537
            DEF+VGWRGP +G +FLVDPF+ TC+  F+RDTAFS +G    AVIKC+FK+EF+ REIN
Sbjct: 146  DEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNEHAVIKCDFKVEFLVREIN 205

Query: 538  EIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIG 717
            E+K+Y + T  V+LLQLAS P ++YRTADDD E++VP+ LLDDDD WIRTTDF  SGAIG
Sbjct: 206  EVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLDDDDQWIRTTDFTASGAIG 265

Query: 718  RSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVPMPDPFFCFQYK 897
            R NTYR+ VRPR+  +L+KA+ +L+ERRVP      +LR++DEPDFG  M D F+ + YK
Sbjct: 266  RCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRDEPDFGRSMSDHFY-YIYK 324

Query: 898  EGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDALR 1077
            EG+ F++MF+VNAV+HKGI NQHQ+S +FF LLR Q+ E N+ ALKHIYSY+ P YDA  
Sbjct: 325  EGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNVAALKHIYSYRHPVYDAYE 384

Query: 1078 ALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSISD 1257
             L +V  WL+KNPKL + P Q+DDIVE+RRL+ITP+KAYCL PEVELSNRVLRKY+ ++D
Sbjct: 385  RLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLLPEVELSNRVLRKYKDVAD 444

Query: 1258 RFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGRK 1437
            RFLRVTFMDE MQ +N NVLTYY A IVR+VT     QKT +F+RV+ IL  GFYLCGRK
Sbjct: 445  RFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGVFKRVKSILTDGFYLCGRK 504

Query: 1438 YSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYATV 1617
            YSFLAFS+NQLRDR+AWFFAED    V  I  WMGKFTNRN+AKCAARMGQCFSSTYATV
Sbjct: 505  YSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNIAKCAARMGQCFSSTYATV 564

Query: 1618 EVPPSQANHKLKD 1656
            EVP  Q N  L D
Sbjct: 565  EVPSGQVNMHLPD 577


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  719 bits (1855), Expect = 0.0
 Identities = 347/553 (62%), Positives = 433/553 (78%), Gaps = 1/553 (0%)
 Frame = +1

Query: 1    AKMLMDYLEDKVGLVWRCRVKTSSTPQDSYPNFE-INTESVQRKTEYEKVEPHAFVHFAL 177
            AK LMD+LE +VG+V+RCR+KTS T ++SYP FE IN+E++    +  +VEPHAFVHFA 
Sbjct: 26   AKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFENINSENIMESIDIRQVEPHAFVHFAS 85

Query: 178  AKSAARALELSESGHLMLGSQIIKVSSGPQNPYRLSEMRRTTTPFKIPGVSIEIGVLRSR 357
             +S    L    S  LML +Q +KV+ GP+  YR+++ RRTTTP K+  V +EIG L  R
Sbjct: 86   PESVNWTL----SNPLMLNNQTLKVTLGPETLYRMNQRRRTTTPIKLADVIVEIGNLVRR 141

Query: 358  DEFVVGWRGPQTGADFLVDPFNGTCQIHFTRDTAFSIRGEARPAVIKCNFKIEFVPREIN 537
            DEF V WRGP  G DFLVDPF+G C+  FTRDTAFS +  A+ A++KC+FK+EF+ R+IN
Sbjct: 142  DEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFKDMAKLAMMKCDFKVEFLVRDIN 201

Query: 538  EIKRYKDFTSIVILLQLASCPKLYYRTADDDIEESVPYDLLDDDDPWIRTTDFVPSGAIG 717
            EIK+Y D + +V+LL LAS P+++YRTADDDIE SVP+DLLDDDDPWIRTTDF PSGAIG
Sbjct: 202  EIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTPSGAIG 261

Query: 718  RSNTYRISVRPRNRRQLEKALGFLQERRVPPVVDIERLRVQDEPDFGVPMPDPFFCFQYK 897
            R N+YR+S+ PR+  +L+KA+ +L+ERRV      + LR+Q EPDF VPM DP F    K
Sbjct: 262  RCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKALRIQSEPDFAVPMSDPIFYVHGK 321

Query: 898  EGLSFKVMFMVNAVVHKGIINQHQMSDNFFDLLRRQNEEFNLVALKHIYSYKRPTYDALR 1077
             G+ F++MF++N +VHKGI NQH +SD  FDL R Q  E NL ALKHI SYKRP +DA  
Sbjct: 322  HGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQPREINLAALKHISSYKRPVFDAYA 381

Query: 1078 ALDNVQKWLMKNPKLLQRPEQMDDIVEVRRLIITPSKAYCLPPEVELSNRVLRKYRSISD 1257
             L NVQ+WL++NPKLL+ P Q+DDI EVRRL+ITP++AYCLPPEVELSNRVLRKY+ +SD
Sbjct: 382  KLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYCLPPEVELSNRVLRKYKEVSD 441

Query: 1258 RFLRVTFMDEAMQTLNKNVLTYYAAPIVREVTKNLSPQKTTMFQRVRDILYKGFYLCGRK 1437
            RFLRVTFMDE MQT+N NVLTYY APIV+E+T N + QKT +F+RV+ +L  GFYLCG++
Sbjct: 442  RFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTKVFKRVKSLLTDGFYLCGQR 501

Query: 1438 YSFLAFSSNQLRDRSAWFFAEDKSTTVDSIKNWMGKFTNRNVAKCAARMGQCFSSTYATV 1617
            YSFLAFSSNQLRDRSAWFFAED   TV+ IK WMG+F NRN+AKCAARMGQCFSSTYATV
Sbjct: 502  YSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGRFNNRNIAKCAARMGQCFSSTYATV 561

Query: 1618 EVPPSQANHKLKD 1656
            EVP ++ N  L++
Sbjct: 562  EVPLTEVNFDLEE 574