BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00023740
         (1554 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...   594   e-167
gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlise...   504   e-140
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   485   e-134
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   484   e-134
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   484   e-134
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   471   e-130
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put...   466   e-129
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...   466   e-129
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   466   e-129
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   462   e-127
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              457   e-126
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   457   e-126
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   456   e-125
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   437   e-120
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...   432   e-118
ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutr...   429   e-117
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...   428   e-117
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   426   e-116
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   424   e-116
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th...   422   e-115

>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score =  594 bits (1531), Expect = e-167
 Identities = 321/529 (60%), Positives = 372/529 (70%), Gaps = 23/529 (4%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKKVGNLFK+++LS S+CCSFCQSSKSK T+VPCIQFFWQGA D LLERAS  LADTVC
Sbjct: 969  KKKKVGNLFKKVELSVSDCCSFCQSSKSKLTDVPCIQFFWQGAPDNLLERASYFLADTVC 1028

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLLQT+IKGDPR+STAN++W+SPDT TWIRSP KSP GELA+DI LEKEAV KSGDAWR
Sbjct: 1029 PVLLQTIIKGDPRISTANVVWLSPDTPTWIRSPSKSPIGELALDIVLEKEAVRKSGDAWR 1088

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            VVMDSCLPV HLID+QRSIPY IKQ++ LLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL
Sbjct: 1089 VVMDSCLPVMHLIDTQRSIPYGIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1148

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LLGNSMTCAGTLIGFN+GGIK+LS+ L VQVPFMNATLFTPRKCFE+AAEKC VDNLSSI
Sbjct: 1149 LLGNSMTCAGTLIGFNSGGIKALSRLLGVQVPFMNATLFTPRKCFEKAAEKCYVDNLSSI 1208

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            V SCAWGKHVSVGTGSPFEI+W T+   +  D+EIDVY+FL MVNSS LEDAGTSCLGA+
Sbjct: 1209 VASCAWGKHVSVGTGSPFEILWDTRKAELSPDKEIDVYDFLHMVNSSKLEDAGTSCLGAD 1268

Query: 653  IXXXXXXXXXDFELSPVRDSGAEKPTFEDII-------GDSNGISKEDDGGWSSLGTKA- 498
            I         D +LSPVR+ G+EKPTFE  +       G S    KE +  WSS G K  
Sbjct: 1269 IEDLGQEDYMDLDLSPVREPGSEKPTFECEVEFGLNGDGFSKEGGKESEDSWSSWGKKVD 1328

Query: 497  --EGWNSN---SAWGKKVDYDEPSDASGWESKKADESTPSTAWGSSNKESESNDWNPIKK 333
              + W      + WGKKVD +        +  K DE   S++WG    ES++  W    +
Sbjct: 1329 TEDDWTKKAELTTWGKKVDREADDWILKGQKSKTDEEN-SSSWG-KKVESDAGGWGRKPE 1386

Query: 332  KSNDSTPSQDWGSKQNTWETKVADESTHSK------AWGSSNKESESNNWHSFQKNSNDS 171
            +S   +  Q   S  N W TK   +ST  +      AWG   KES++  W       N  
Sbjct: 1387 QSTGGSTGQT-RSIDNDW-TKAGQQSTFDEDAQTGSAWG-KKKESDAGGW-----GKNVE 1438

Query: 170  TPAQSWGSKNDT----WETKVADESTPSKAWGSSNKESGSNDAAGWGSK 36
            + A  WG K ++    W  KV  +   +  WG    +   +DA GWG K
Sbjct: 1439 SDAGGWGKKVESDAGGWGKKVESD---AGGWG----KQVDSDAGGWGKK 1480



 Score = 63.2 bits (152), Expect = 3e-07
 Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 31/202 (15%)
 Frame = -2

Query: 533  DDGGWSSLGTKAEGWNSNSAWGKKVDYDEPSDASGWESKKADESTPSTAWG--------- 381
            D G W+    ++   N   A     D+ +  + S W + KA +    + WG         
Sbjct: 1648 DGGDWAKKDEQSTWGNVKKAGSDGGDWAKKDEQSTWGNVKASQIQNKSTWGRDAAPTENV 1707

Query: 380  SSNKESESNDWNPIKK---------KSNDSTPSQDWGSKQNTWETKVADESTHSKAWGSS 228
            SS K  E   W+  +K         K++ +     WG      E   + +S     W S+
Sbjct: 1708 SSPKSQEDGLWSSAQKGEQSTWGHVKTSQTQNKSTWGGDTAPIENVPSPKSQEDGLWSSA 1767

Query: 227  NK-------ESESNNWHSFQKNSNDSTPAQSWGSKNDTW-----ETKVADESTPSKAWGS 84
            +          ++N W +      +S P  +WGS +D W     +T   D +     W S
Sbjct: 1768 SAAQKEQDGSKDNNPWQTKVAEQANSEPLSTWGSSSD-WVKPDSQTPTGDNTKNESPWSS 1826

Query: 83   SNK-ESGSNDAAGWGSKVADDA 21
            S K  + S D+ GWGS   D A
Sbjct: 1827 SQKLLNDSTDSQGWGSSKVDTA 1848


>gb|EPS67715.1| hypothetical protein M569_07058, partial [Genlisea aurea]
          Length = 1379

 Score =  504 bits (1299), Expect = e-140
 Identities = 258/427 (60%), Positives = 316/427 (74%), Gaps = 6/427 (1%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKKVGNLFK+I LSYS+ C+FC SSKSK T VPC+QF W GA D + ++ S +L+DTVC
Sbjct: 969  KKKKVGNLFKKIKLSYSDHCTFCASSKSKRTEVPCVQFLWNGAIDDI-DKVSHLLSDTVC 1027

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            P LLQTVIKGDPRVSTA ++W+SP TATWIRSP K+  GE+A+++  EKEA   SGDAWR
Sbjct: 1028 PALLQTVIKGDPRVSTAEIVWVSPGTATWIRSPSKNLNGEMAIEVVFEKEAARHSGDAWR 1087

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            V MDSC+PV HLID++RSIPYAIKQ++ LLGISCAFEQAVQRLSTSVTMVTKGVLKDH+L
Sbjct: 1088 VAMDSCVPVMHLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHIL 1147

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LLGN+MTCAGTLIGFN+GGIK+LS+SLD+ VPFM ATLFTPRKCFERAAEKC+VD L+S+
Sbjct: 1148 LLGNNMTCAGTLIGFNSGGIKALSQSLDLHVPFMTATLFTPRKCFERAAEKCHVDKLTSV 1207

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            VGSCAWGKHVSVGTGSPFEI+W T+  ++  D+E+DVY FL +VN S   D GTSC+G E
Sbjct: 1208 VGSCAWGKHVSVGTGSPFEILWDTRKTDLNPDKELDVYGFLHLVNGSVPLDMGTSCIGTE 1267

Query: 653  IXXXXXXXXXDFELSPVRDSGAEKPTFEDI----IGDSNGISKEDDGGWSSLGTKAEGWN 486
            I         DFELSP R+ G EKPTF+D     +  + G++ E  G WSS G       
Sbjct: 1268 I-EDLDQELMDFELSPEREPGLEKPTFDDEHEFGMNSNEGVT-EVKGSWSSWGNVVA--P 1323

Query: 485  SNSAWGKKVDYDEPSDASGWESKKADE--STPSTAWGSSNKESESNDWNPIKKKSNDSTP 312
              + W  KV      +++GW S    E  +    +WG + ++ +   W   K+KS+D+  
Sbjct: 1324 DTNDWSNKV------ESTGWGSAVNSELKNKNEDSWGQNEEKPDDTVWGQ-KEKSDDTV- 1375

Query: 311  SQDWGSK 291
               WG K
Sbjct: 1376 ---WGQK 1379


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  485 bits (1248), Expect = e-134
 Identities = 267/566 (47%), Positives = 348/566 (61%), Gaps = 49/566 (8%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKK G  FKRI LS S+CC F   S SKWT++PC++FFWQ  +D  LER   I+AD +C
Sbjct: 772  KKKKYGYHFKRILLSVSDCCFF-NHSDSKWTDMPCLKFFWQDMTDTDLERTKHIMADMIC 830

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL T+IKGDPR+ST N+IWI+P T TW++SPC S KGELAV++ LEKEAV  +GDAWR
Sbjct: 831  PVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELAVEVALEKEAVRLTGDAWR 890

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            +V+D CLPVFHLID++RSIPYAIKQI+ L GISCAF+QAVQRLSTSVTMVTKGVLK+HLL
Sbjct: 891  IVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEHLL 950

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL +SMTCAG L+GFNT GIK+L ++L+VQVPF  ATL+TPRKCFERA+EKC+VD L+SI
Sbjct: 951  LLASSMTCAGNLVGFNTSGIKALCRALNVQVPFTEATLYTPRKCFERASEKCHVDTLASI 1010

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            VGSC+WGK VS+GTG+ F+++W TK +  M D+  DVYNFL +V+S+  E+  +  LG +
Sbjct: 1011 VGSCSWGKRVSIGTGAKFDLLWETKEIE-MADKPTDVYNFLHLVSSANEEEVDSGGLGED 1069

Query: 653  IXXXXXXXXXDFELSPVRDSGAEKPTFEDI--IGDSNGISKEDDGGWSSLGTKAEGWNSN 480
            I         +  LSP +++   K  FE+   IG  + I+  D+  W +  +   GWN+N
Sbjct: 1070 IESFEKDVYMEPALSPEQEN---KAVFEETLEIGVDSDITGADESSWDAFPSSGTGWNAN 1126

Query: 479  -------------SAWGKKVDYDEPSDAS---GW------------ESKKADESTPSTAW 384
                         S+WG K D   P D+S   GW            +S K+     S +W
Sbjct: 1127 KIDTGSGSAEGGWSSWGSKKDQANPEDSSKTGGWSSGGSKQKPQPEDSSKSGGWDASKSW 1186

Query: 383  GSSNKESESNDWNPIKKKSNDSTPSQDWGS---KQNTWE--------TKVADEST----- 252
            G SN+   S  W    K +ND +   D GS   +   W         +K  + ST     
Sbjct: 1187 GGSNQGDPSPVWGQPVKATNDISIENDHGSGSAEGGGWANSGMKKDLSKQENSSTAGGWD 1246

Query: 251  HSKAWGSSNKESESNNWHSFQKNSNDSTPAQSWGSKNDTWETKVADESTPSKAWGSSNKE 72
             SK+W  S  +  S+ W +  K ++D+   +   SK D     V D       WG     
Sbjct: 1247 ASKSWSGSKPKDPSSAWGA-GKKTDDNNGWKKSDSKKDLASGSVEDGG--CSGWGPKKDL 1303

Query: 71   SGSNDAA---GWGSKVADDATPSKAW 3
                D+A   GWG+  +    PS AW
Sbjct: 1304 LQPEDSAGENGWGASKSKSKEPSSAW 1329



 Score = 63.2 bits (152), Expect = 3e-07
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 19/184 (10%)
 Frame = -2

Query: 557  DSNGISKEDDGGWSSLGTKAEGWNSNSAWGKKVDYDEPSDASG---WESKKADESTPSTA 387
            D+NG  K D     + G+  +G    S WG K D  +P D++G   W + K+    PS+A
Sbjct: 1271 DNNGWKKSDSKKDLASGSVEDG--GCSGWGPKKDLLQPEDSAGENGWGASKSKSKEPSSA 1328

Query: 386  WGSSNKESESNDW--NPIKKKSNDSTPSQDWGSKQNTWETKVADES--THSKAW------ 237
            WG   +E+++  W  N  ++ S +   +  W  K        + +S    SK W      
Sbjct: 1329 WGKPAQETDNIGWKKNNPQRDSENLEGTSGWNDKLQKENKSFSKQSQPASSKDWDSTGNI 1388

Query: 236  --GSSNKESESNNWHSFQKNSNDSTPAQSWG-SKNDTWETKVADE---STPSKAWGSSNK 75
              GS+    E  N   +   SN S    +WG +  ++W+    DE         WG S+K
Sbjct: 1389 TAGSTGFGVEKGNEKPWDVASNVSVKKSTWGQTGGNSWKKNEQDEKDGDPQGLPWGKSHK 1448

Query: 74   ESGS 63
             S S
Sbjct: 1449 SSDS 1452


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score =  484 bits (1246), Expect = e-134
 Identities = 267/498 (53%), Positives = 329/498 (66%), Gaps = 31/498 (6%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKK+GNLFKRI LS SE CSFC +S SK  N PC++F W  ASD  LER S ILAD +C
Sbjct: 973  KKKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHILADMIC 1032

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            P+LL TVIKGDPRVS+AN+ WISPDT +WIRSP KS +GELA+DI LEKEAV + GDAWR
Sbjct: 1033 PILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKQRGDAWR 1092

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            ++MDSCLPV HLID+ RSIPYAIKQ++ L+GISCAFEQAV+RLSTSVTMVTKGVLKDHL+
Sbjct: 1093 ILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVKRLSTSVTMVTKGVLKDHLV 1152

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMTCAG L+GFN GGIK+LS+SL+VQ+PF  ATLFTPRKCFERAAEKC+VD+LSSI
Sbjct: 1153 LLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSI 1212

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMV-NSSTLEDAGTSCLGA 657
            V SC+WGKHV+VGTGS FE++  T++V   + +  DVY+FL +V N+S  E  GTSCLGA
Sbjct: 1213 VASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGA 1272

Query: 656  EIXXXXXXXXXDFELSPVRDSGAEKPTFEDII----------GDSNGI--------SKED 531
            EI            LSP RDSG+E PTFED            G  +G         S + 
Sbjct: 1273 EIDELEEDEDMGLYLSPNRDSGSEMPTFEDRAEFDYNENLDEGKPSGSAWEKASSGSVKS 1332

Query: 530  DGGWSSLGTKAEG-------WNSNSAWGKKVDYDEPSDASGWESKKADESTPSTAWGSSN 372
             G W   G    G        +S SAWGKKV  DEP + +  +S   ++S   ++WG   
Sbjct: 1333 GGSWDMAGKTQNGAEEGVNQSDSWSAWGKKV--DEPEN-NRQQSGSGEQSGSWSSWG-KK 1388

Query: 371  KESESNDWNPIKKKSNDSTPSQDWGSKQNTWETKVADESTHSKAWGSSNKESESNNWHSF 192
             E +   W+  K+ +++S+    WG   N            + A G+   +   N+W S 
Sbjct: 1389 VEKDGGSWDEPKQLNSESS----WGKAPN------GGGLGSATAEGNKRLDQSVNDWSSS 1438

Query: 191  -----QKNSNDSTPAQSW 153
                 QK +N     + W
Sbjct: 1439 VSRDGQKXTNTXXLYKKW 1456


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  484 bits (1245), Expect = e-134
 Identities = 258/557 (46%), Positives = 341/557 (61%), Gaps = 40/557 (7%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            K KKV   FK   LS SECCSF QS   K +N+PC+ F  +GASD  L++ S +LA+ + 
Sbjct: 971  KMKKVVQFFKNTSLSVSECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIY 1030

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+T+IKGDPR+ +AN+IWISPDT  WIR+P K+ KGELA+D+ LEK  V +SGDAWR
Sbjct: 1031 PVLLETIIKGDPRIYSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAWR 1090

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
             V+DSCLPVFHLID++RS+PYAIKQ++ LLG+SCAFEQAVQRLS SVTMV KGVLK+HL+
Sbjct: 1091 TVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHLI 1150

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMTCAG L+GFN+GG K+LS+SL+VQVPF  ATLFTPRKCFE+AAEKC+ DNLSS+
Sbjct: 1151 LLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFTPRKCFEKAAEKCHTDNLSSV 1210

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSST-LEDAGTSCLGA 657
            V +C+WGKHV+VGTGS F+++W T++     D+ +DVY+FL MV SST +E++ T CLG 
Sbjct: 1211 VAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEESDTGCLGE 1270

Query: 656  EIXXXXXXXXXDFELSPVRDSGAEKPTFEDIIGDSNGIS---------------KEDDGG 522
            E+         D+ LSP  +  ++KP FED++ D + +                K  +  
Sbjct: 1271 EV--DGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDK 1328

Query: 521  WSSLGTKAE----GWNSNSAWGKKVDYDEPSDASGWESKKADESTPSTAWGSSNKESESN 354
            W  LGT  E    GW +  AWGK    D+  + +G  S+K        +WG S+ +   N
Sbjct: 1329 WEKLGTSLEKPSSGWRTEGAWGK--SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWEN 1386

Query: 353  DWNPIKKKSNDSTPSQDWGSKQNTWETKVADESTHSKAWGSSNKESESNNWHSFQKNSND 174
              +P  K  ++      WG         V+  +  S  WGS     +S+         + 
Sbjct: 1387 VGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSA 1446

Query: 173  STPAQSWGSK-------NDTWETKVADESTPSKAWG---SSNKES----------GSNDA 54
            S P   WG+K        D  E      + PS AWG   S +K S            N  
Sbjct: 1447 SKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPL 1506

Query: 53   AGWGSKVADDATPSKAW 3
            +GWG++ A D+  S  W
Sbjct: 1507 SGWGTE-AQDSGKSSDW 1522


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  471 bits (1213), Expect = e-130
 Identities = 258/558 (46%), Positives = 340/558 (60%), Gaps = 41/558 (7%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            K KKV   FK   LS SECCSF QS   K +N+PC+ F  +GASD  L++ S +LA+ + 
Sbjct: 972  KMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIY 1031

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+T+IKGDPR+ +AN+IWISPDT  WIR+P K+ KGELA+D+ LEK  V +SGDAWR
Sbjct: 1032 PVLLETIIKGDPRICSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAWR 1091

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
             V+DSCLPVFHLID++RS+PYAIKQ++ LLG+SCAFEQAVQRLS SVTMV KGVLK+HL+
Sbjct: 1092 TVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHLI 1151

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMTCAG L+GFN+GG K+LS+SL+VQVPF  ATLF PRKCFE+AAEK + DNLSS+
Sbjct: 1152 LLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSV 1211

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSST-LEDAGTSCLGA 657
            V +C+WGKHV+VGTGS F+++W T++     D+ +DVY+FL MV SST +E+  T CLG 
Sbjct: 1212 VAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGE 1271

Query: 656  EIXXXXXXXXXDFELSPVRDSGAEKPTFEDIIGDSNGIS---------------KEDDGG 522
            E+         D+ LSP  +  ++KP FED++ D + +                K  +  
Sbjct: 1272 EV--DGLEDEFDWSLSPEHNLCSDKPIFEDLVEDQSWLENKQENENWDSEADCRKSSEDK 1329

Query: 521  WSSLGTKAE----GWNSNSAWGKKVDYDEPSDASGWESKKADESTPSTAWGSSNKESESN 354
            W  LGT  E    GW +  AWGK    D+  + +G  S+K        +WG S+ +   N
Sbjct: 1330 WEKLGTSLEKPSSGWRTEGAWGK--SSDDKLEKAGSPSRKPSGWGTEASWGESSSDKWEN 1387

Query: 353  DWNPIKKKSNDSTPSQDW----GSKQNTWETKVADEST---HSKAWGSSNKESESNNWHS 195
              +P  K  ++      W    G K     +  A  S+      +WG S  + + N   S
Sbjct: 1388 VGSPAAKSFSEWGTEASWGKSFGDKPENVRSPAAKTSSGWGSEASWGKSPGDRQENVGRS 1447

Query: 194  FQKNSNDSTPAQSWG-SKNDTWETKVADESTPSKAWG---SSNKES----------GSND 57
              K  +      SWG S  D  E      + PS AWG   S +K S            N 
Sbjct: 1448 ASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENP 1507

Query: 56   AAGWGSKVADDATPSKAW 3
             +GWG++ A D+  S  W
Sbjct: 1508 LSGWGTE-AQDSGKSSDW 1524


>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao] gi|508727914|gb|EOY19811.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            3 [Theobroma cacao]
          Length = 1675

 Score =  466 bits (1200), Expect = e-129
 Identities = 259/591 (43%), Positives = 348/591 (58%), Gaps = 74/591 (12%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKK  + FKR DL +SECCS  QS   KW ++ C+ FF +   D  L+     L D + 
Sbjct: 969  KKKKTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIY 1028

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+TVIKGDPR+ +AN+IW+SPDT TWIRSP K+ KGELA+D+ LEK AV ++GDAWR
Sbjct: 1029 PVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWR 1088

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
             V+D CLPV +LID+QRSIPYAIKQ++ LLGISCAFEQAVQRLSTSV+MV +GVLK+HL+
Sbjct: 1089 TVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLKEHLI 1148

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMTCAG LIGFN+GG K+LS+SL++QVPF  ATLFTPRKCFERAAEKC+VD+LSSI
Sbjct: 1149 LLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVDSLSSI 1208

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            V SC+WGKHV+VGTGS F+++W  K V       IDVYNFL M++S++   + T+CLG E
Sbjct: 1209 VASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSSASGPSSTTTCLGEE 1268

Query: 653  IXXXXXXXXXD-FELSPVRDSGAEKPTFEDIIGDSNGISKED-DGGWSSLGT--KAEGWN 486
            +           + LSP   +G +KP FED     N +  +  +  W    +  K   WN
Sbjct: 1269 VDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAESSWEKGVSLDKVSSWN 1328

Query: 485  SNSAWGKKVDYDEP-----------SDASGWESKKADESTPSTAWGSSNKESESNDWNPI 339
             +SAW KK +  +            SD   W + K+     + A  S+ K++E  DW   
Sbjct: 1329 VSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTSKSKTQDAAAAATSTTKKTEWCDWGTS 1388

Query: 338  KKKSNDSTPSQDWGSKQNTW------ETKV------ADESTHSKAWG------------- 234
            K K+ +   +    ++QN W      ++K+         +T    WG             
Sbjct: 1389 KSKTQEVAATVTGTAEQNEWCDWRTSKSKIQVVAAAVTSTTKQSEWGDWGTSKSKTQDVA 1448

Query: 233  ---SSNKESESNNWHSFQKNSNDSTPA------------QSWG-SKNDTWETKVADESTP 102
               +   E+E  +W   +  + D +P               WG  KNDT +  + +++  
Sbjct: 1449 AAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWGLKKNDTQDVSMEEKTFK 1508

Query: 101  SK------AWGSSNKES---GSNDA---AGWG------SKVADDATPSKAW 3
            S       +WG+  KES    +NDA   +GWG      +K  DD++ S  W
Sbjct: 1509 SNGADTGTSWGTMGKESEKPDANDALPWSGWGTQDVIPTKTLDDSSKSSGW 1559



 Score = 59.3 bits (142), Expect = 5e-06
 Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 13/186 (6%)
 Frame = -2

Query: 599  DSGAEKPTFEDIIGDSNGISKEDDGGWSS-------LGTKAEGWNSN-----SAWGKKVD 456
            D G  K   +D+     G  + + G W         +  K +G   N     S WG K +
Sbjct: 1436 DWGTSKSKTQDVAAAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWGLKKN 1495

Query: 455  YDEPSDASGWESK-KADESTPSTAWGSSNKESESNDWNPIKKKSNDSTPSQDWGSKQNTW 279
              +  D S  E   K++ +   T+WG+  KESE  D       +ND+ P   WG+ Q+  
Sbjct: 1496 --DTQDVSMEEKTFKSNGADTGTSWGTMGKESEKPD-------ANDALPWSGWGT-QDVI 1545

Query: 278  ETKVADESTHSKAWGSSNKESESNNWHSFQKNSNDSTPAQSWGSKNDTWETKVADESTPS 99
             TK  D+S+ S  W        S  W S  + SN    +  W + N    T    +S   
Sbjct: 1546 PTKTLDDSSKSSGWEQQKSPECSQGWGSLDE-SNQPASSNGWDTPNGLGST----QSEKQ 1600

Query: 98   KAWGSS 81
              WG S
Sbjct: 1601 HQWGQS 1606


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  466 bits (1200), Expect = e-129
 Identities = 259/591 (43%), Positives = 348/591 (58%), Gaps = 74/591 (12%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKK  + FKR DL +SECCS  QS   KW ++ C+ FF +   D  L+     L D + 
Sbjct: 969  KKKKTADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIY 1028

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+TVIKGDPR+ +AN+IW+SPDT TWIRSP K+ KGELA+D+ LEK AV ++GDAWR
Sbjct: 1029 PVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWR 1088

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
             V+D CLPV +LID+QRSIPYAIKQ++ LLGISCAFEQAVQRLSTSV+MV +GVLK+HL+
Sbjct: 1089 TVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLKEHLI 1148

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMTCAG LIGFN+GG K+LS+SL++QVPF  ATLFTPRKCFERAAEKC+VD+LSSI
Sbjct: 1149 LLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVDSLSSI 1208

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            V SC+WGKHV+VGTGS F+++W  K V       IDVYNFL M++S++   + T+CLG E
Sbjct: 1209 VASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHMLSSASGPSSTTTCLGEE 1268

Query: 653  IXXXXXXXXXD-FELSPVRDSGAEKPTFEDIIGDSNGISKED-DGGWSSLGT--KAEGWN 486
            +           + LSP   +G +KP FED     N +  +  +  W    +  K   WN
Sbjct: 1269 VDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAESSWEKGVSLDKVSSWN 1328

Query: 485  SNSAWGKKVDYDEP-----------SDASGWESKKADESTPSTAWGSSNKESESNDWNPI 339
             +SAW KK +  +            SD   W + K+     + A  S+ K++E  DW   
Sbjct: 1329 VSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTSKSKTQDAAAAATSTTKKTEWCDWGTS 1388

Query: 338  KKKSNDSTPSQDWGSKQNTW------ETKV------ADESTHSKAWG------------- 234
            K K+ +   +    ++QN W      ++K+         +T    WG             
Sbjct: 1389 KSKTQEVAATVTGTAEQNEWCDWRTSKSKIQVVAAAVTSTTKQSEWGDWGTSKSKTQDVA 1448

Query: 233  ---SSNKESESNNWHSFQKNSNDSTPA------------QSWG-SKNDTWETKVADESTP 102
               +   E+E  +W   +  + D +P               WG  KNDT +  + +++  
Sbjct: 1449 AAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWGLKKNDTQDVSMEEKTFK 1508

Query: 101  SK------AWGSSNKES---GSNDA---AGWG------SKVADDATPSKAW 3
            S       +WG+  KES    +NDA   +GWG      +K  DD++ S  W
Sbjct: 1509 SNGADTGTSWGTMGKESEKPDANDALPWSGWGTQDVIPTKTLDDSSKSSGW 1559



 Score = 59.3 bits (142), Expect = 5e-06
 Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 13/186 (6%)
 Frame = -2

Query: 599  DSGAEKPTFEDIIGDSNGISKEDDGGWSS-------LGTKAEGWNSN-----SAWGKKVD 456
            D G  K   +D+     G  + + G W         +  K +G   N     S WG K +
Sbjct: 1436 DWGTSKSKTQDVAAAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWGLKKN 1495

Query: 455  YDEPSDASGWESK-KADESTPSTAWGSSNKESESNDWNPIKKKSNDSTPSQDWGSKQNTW 279
              +  D S  E   K++ +   T+WG+  KESE  D       +ND+ P   WG+ Q+  
Sbjct: 1496 --DTQDVSMEEKTFKSNGADTGTSWGTMGKESEKPD-------ANDALPWSGWGT-QDVI 1545

Query: 278  ETKVADESTHSKAWGSSNKESESNNWHSFQKNSNDSTPAQSWGSKNDTWETKVADESTPS 99
             TK  D+S+ S  W        S  W S  + SN    +  W + N    T    +S   
Sbjct: 1546 PTKTLDDSSKSSGWEQQKSPECSQGWGSLDE-SNQPASSNGWDTPNGLGST----QSEKQ 1600

Query: 98   KAWGSS 81
              WG S
Sbjct: 1601 HQWGQS 1606


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  466 bits (1200), Expect = e-129
 Identities = 260/478 (54%), Positives = 313/478 (65%), Gaps = 26/478 (5%)
 Frame = -2

Query: 1550 KKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVCP 1371
            KKK+GNLFKRI LS SE CSFC +S SK  N PC++F W  ASD  LER S ILAD + P
Sbjct: 525  KKKIGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHILADMIXP 584

Query: 1370 VLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWRV 1191
            +LL TVIKGDPRVS+AN+ WISPDT +WIRSP KS +GELA+DI LEKEAV   GDAWR 
Sbjct: 585  ILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKXRGDAWRX 644

Query: 1190 VMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLLL 1011
            +MDSCLPV HLID+ RSIPYAIKQ++ L+GISCAFEQAV RLSTSVTMVTKGVLKDHL+L
Sbjct: 645  LMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVXRLSTSVTMVTKGVLKDHLVL 704

Query: 1010 LGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSIV 831
            L NSMTCAG L+GFN GGIK+LS+SL+VQ+PF  ATLFTPRKCFERAAEKC+VD+LSSIV
Sbjct: 705  LANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSIV 764

Query: 830  GSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMV-NSSTLEDAGTSCLGAE 654
             SC+WGKHV+VGTGS FE++  T++V   + +  DVY+FL +V N+S  E  GTSCLGAE
Sbjct: 765  ASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGAE 824

Query: 653  IXXXXXXXXXDFELSPVRDSGAEKPTFEDII----------GDSNGISKED--------D 528
            I            LSP RDSG+E PTFED            G  +G + E+         
Sbjct: 825  IDELEEDEDMGLYLSPNRDSGSEMPTFEDRAEFDYNENLDEGKPSGSAWEEASSGSVKSG 884

Query: 527  GGWSSLGTKAEG-------WNSNSAWGKKVDYDEPSDASGWESKKADESTPSTAWGSSNK 369
            G W   G    G        +S S+WGKKV  DEP + +  +S   ++S   + WG   K
Sbjct: 885  GSWDMAGKTQNGAEEGVNQSDSWSSWGKKV--DEPEN-NRQQSGSGEQSGSWSPWGRRWK 941

Query: 368  ESESNDWNPIKKKSNDSTPSQDWGSKQNTWETKVADESTHSKAWGSSNKESESNNWHS 195
            +       P +  S  S     WG   N            + A G+   +   N+W S
Sbjct: 942  KMVVLGDEPKQLNSESS-----WGKAPN------GGGLGSATAEGNRRLDQSVNDWSS 988


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  462 bits (1188), Expect = e-127
 Identities = 254/542 (46%), Positives = 335/542 (61%), Gaps = 36/542 (6%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKKVGNLFK+  L  SE CSF Q         PC+ FFWQGA DV LER S+ILAD +C
Sbjct: 978  KKKKVGNLFKKTILLVSESCSFQQCIDES----PCLMFFWQGADDVHLERTSNILADMIC 1033

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+T+IKGD R+S AN+IW +P+T TWIR+P ++ KGELA+DI LEK  V KSGDAWR
Sbjct: 1034 PVLLETIIKGDHRISCANIIWATPETNTWIRNPSRTQKGELALDIVLEKSVVKKSGDAWR 1093

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            +V+DSCLPV HLI++ RSIPYAIKQ++ LLG+SCAF+ AVQRLS SVTMV KGVLK+HL+
Sbjct: 1094 IVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSVTMVAKGVLKEHLI 1153

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LLGNSMTCAG+LIGF TGG K+LS+SLD+QVPF  ATLFTPRKCFE+AAEKC+ D+LSSI
Sbjct: 1154 LLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKAAEKCHTDSLSSI 1213

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSST-LEDAGTSCLGA 657
            V SCAWGKHV+VGTGS F+++W TK   +  +  +DVY+FL MV S+   E++ T+CLGA
Sbjct: 1214 VASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFLNMVRSTAGGEESVTACLGA 1273

Query: 656  EIXXXXXXXXXDFELSPVRDSGAEKPTFEDIIGDSNGISKED-DGGWSSLGT-------- 504
            E+         D+ LSP  +S ++KPTFED     + +  +  +  W  + +        
Sbjct: 1274 EV-DDLMLEDEDWNLSPEHNSSSDKPTFEDSAEFQDFLGNQPAESNWEKISSLKDRSRSS 1332

Query: 503  ------KAEGWNSNSAWGKKVDYDEPSD--ASGWESKKADESTPSTAWGSSNKESESNDW 348
                  K +G      W   ++  E +D  +SGW++  A   T + +W S N  ++SN +
Sbjct: 1333 GNWDVDKNDGAVKEKPWSLGMNTAEANDVASSGWDTAAA--RTTNNSWNSENNVAQSNSF 1390

Query: 347  NPIKKK------------------SNDSTPSQDWGSKQNTWETKVADESTHSKAWGSSNK 222
            +    K                  SND      WG K    + K A+ +     WG    
Sbjct: 1391 SGWATKKPEPHNGFATKVQEEPTTSNDWDAGAAWGRKDR--DNKFAETNASKSWWGKVTD 1448

Query: 221  ESESNNWHSFQKNSNDSTPAQSWGSKNDTWETKVADESTPSKAWGSSNKESGSNDAAGWG 42
              ES       K+ N     Q  G+    W+ K++ + + S  W S   +  + ++ GW 
Sbjct: 1449 GDESGQ----NKSKNKRPEDQDVGTHG--WDDKMSQDQSIS-GWASKTTQEATTESLGWD 1501

Query: 41   SK 36
            SK
Sbjct: 1502 SK 1503


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  457 bits (1177), Expect = e-126
 Identities = 242/509 (47%), Positives = 318/509 (62%), Gaps = 13/509 (2%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKK VG  FK+I LS+ ECC+F  S +SK +++PC+ FFWQG  D  LE+   ILA  +C
Sbjct: 1033 KKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQILHILAHKIC 1092

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLLQT+IKGD RV T N+IWISPDT TWIR+PCKS KGELA+DI LEK AV + GDAWR
Sbjct: 1093 PVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWR 1152

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            +V+D+CLPV HLID++RSIPYAIKQ++ LLGISCAF+QAVQRLS SVTMV KGVLK+HL+
Sbjct: 1153 IVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLI 1212

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMTCAG LIGFN+GG K+LS++L++QVPF  ATLFTPRKCFE+A+EKC+ D+LSSI
Sbjct: 1213 LLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSI 1272

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTL-EDAGTSCLGA 657
            V SC+WGKHV+VGTGS F+++W TK +    D  ID+Y+FL +V S +  ++  T+CLGA
Sbjct: 1273 VASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGA 1332

Query: 656  EIXXXXXXXXXD-FELSPVRDSGAEKPTFEDIIGDSNGISKE---DDGGWS--------S 513
            E+             +SP   S  EKP FED     N          G W+        +
Sbjct: 1333 EVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGGDWAVNQNKETTA 1392

Query: 512  LGTKAEGWNSNSAWGKKVDYDEPSDASGWESKKADESTPSTAWGSSNKESESNDWNPIKK 333
               K   W+S   WG     D+ +    + +++ DES+ S  W            N   +
Sbjct: 1393 STLKPSAWSS---WGT----DKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKAQNTAFR 1445

Query: 332  KSNDSTPSQDWGSKQNTWETKVADESTHSKAWGSSNKESESNNWHSFQKNSNDSTPAQSW 153
            ++++ +P      +  T+          S AWG    E++   W     N ND  P    
Sbjct: 1446 RTHEDSPRSS--GRDETFRD--GRPQFASSAWGKKIDEADKTGW-----NKNDGKPQMDK 1496

Query: 152  GSKNDTWETKVADESTPSKAWGSSNKESG 66
              ++  W+ KVA E T    +G  +  +G
Sbjct: 1497 LRESYDWDCKVAQEKTTQSTYGGISSTTG 1525


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  457 bits (1177), Expect = e-126
 Identities = 242/509 (47%), Positives = 318/509 (62%), Gaps = 13/509 (2%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKK VG  FK+I LS+ ECC+F  S +SK +++PC+ FFWQG  D  LE+   ILA  +C
Sbjct: 973  KKKNVGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQILHILAHKIC 1032

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLLQT+IKGD RV T N+IWISPDT TWIR+PCKS KGELA+DI LEK AV + GDAWR
Sbjct: 1033 PVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWR 1092

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            +V+D+CLPV HLID++RSIPYAIKQ++ LLGISCAF+QAVQRLS SVTMV KGVLK+HL+
Sbjct: 1093 IVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLI 1152

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMTCAG LIGFN+GG K+LS++L++QVPF  ATLFTPRKCFE+A+EKC+ D+LSSI
Sbjct: 1153 LLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSI 1212

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTL-EDAGTSCLGA 657
            V SC+WGKHV+VGTGS F+++W TK +    D  ID+Y+FL +V S +  ++  T+CLGA
Sbjct: 1213 VASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGA 1272

Query: 656  EIXXXXXXXXXD-FELSPVRDSGAEKPTFEDIIGDSNGISKE---DDGGWS--------S 513
            E+             +SP   S  EKP FED     N          G W+        +
Sbjct: 1273 EVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGGDWAVNQNKETTA 1332

Query: 512  LGTKAEGWNSNSAWGKKVDYDEPSDASGWESKKADESTPSTAWGSSNKESESNDWNPIKK 333
               K   W+S   WG     D+ +    + +++ DES+ S  W            N   +
Sbjct: 1333 STLKPSAWSS---WGT----DKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKAQNTAFR 1385

Query: 332  KSNDSTPSQDWGSKQNTWETKVADESTHSKAWGSSNKESESNNWHSFQKNSNDSTPAQSW 153
            ++++ +P      +  T+          S AWG    E++   W     N ND  P    
Sbjct: 1386 RTHEDSPRSS--GRDETFRD--GRPQFASSAWGKKIDEADKTGW-----NKNDGKPQMDK 1436

Query: 152  GSKNDTWETKVADESTPSKAWGSSNKESG 66
              ++  W+ KVA E T    +G  +  +G
Sbjct: 1437 LRESYDWDCKVAQEKTTQSTYGGISSTTG 1465


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  456 bits (1172), Expect = e-125
 Identities = 261/574 (45%), Positives = 348/574 (60%), Gaps = 57/574 (9%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KK  +G +FKR  LSYSECCSF QSS    +  PC+ FF+Q  ++  LE  S +LAD +C
Sbjct: 976  KKMNIGEIFKRTILSYSECCSFHQSSADNRSGSPCLMFFYQDFNNSELEAISQMLADFIC 1035

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+TVIKGDPR+S+AN+IWI+ ++ TWIRSP KS KGELA+D+ LEK  V +SGDAWR
Sbjct: 1036 PVLLKTVIKGDPRISSANIIWINSESTTWIRSPNKSLKGELALDVVLEKSVVKQSGDAWR 1095

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            + +D CLPV HLID++RSIPYAIKQ++ LLG+SCAF+QAVQRL+ +V MV KGVLK+HL+
Sbjct: 1096 IALDCCLPVLHLIDTRRSIPYAIKQVQELLGVSCAFDQAVQRLAKAVAMVAKGVLKEHLI 1155

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMTCAG  +GFN GG K+LS++L++QVPF  ATLFTP+KCFERAAEKC++D+LSSI
Sbjct: 1156 LLANSMTCAGNFVGFNPGGYKALSRALNIQVPFTEATLFTPKKCFERAAEKCHMDSLSSI 1215

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            V SC+WGKHV+VGTGS FEI+W TK   +     +DV+NFL MVN++  E+  T+ LG E
Sbjct: 1216 VASCSWGKHVAVGTGSRFEILWDTKEGGLNEVGGVDVFNFLHMVNAANGEELTTAALGTE 1275

Query: 653  I-XXXXXXXXXDFELSPVRDSGAEKPTFEDIIG-DSNGISKEDDGGWSSLGTKAEG---W 489
            I          D  LSP  +S ++KP FEDI+    N  +      W S+ T + G   W
Sbjct: 1276 IDDLVPDYENGDVSLSPEHNSSSDKPVFEDIVEFPDNFENVPGKSSWDSIYTASTGGKDW 1335

Query: 488  -----------------NSNSAWGKKVDYDEPSD------------ASGWESKKADESTP 396
                             +S SAWG K   ++ +              S W +K   E  P
Sbjct: 1336 GAVKIGTQDGISAETQADSTSAWGIKTPREDDTSPWGTAKTATEDAPSAWGTKTVKEDAP 1395

Query: 395  STAWG-SSNKESESNDWNPIKKKSNDSTPS-------QDWGSKQ-------NTWETKVAD 261
            S AWG  + +E   + W   K  + D++ +         WG+ +       + W TK   
Sbjct: 1396 S-AWGIKTAREDARSPWGTAKTATEDASSATAREDAPSPWGTAKTATGDALSAWGTKTLK 1454

Query: 260  ESTHSKAWGSSNKESESNNWHSFQKNSNDSTPAQSWGSKNDT------WET-KVADESTP 102
            E   S AWG+     ++ +     K + +  PA +WG+K+ T      W T K A E  P
Sbjct: 1455 EDAPS-AWGTKTVREDAPSPWGTAKRATEDAPA-AWGAKSATEDAPPPWGTAKTAAEDAP 1512

Query: 101  SKAWGSSNKESGSNDAAGWGSKVA-DDATPSKAW 3
            S AWG   K    + ++ W +K A +DAT   AW
Sbjct: 1513 S-AWGV--KAVKKDASSPWETKTATEDAT--TAW 1541


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  437 bits (1123), Expect = e-120
 Identities = 246/548 (44%), Positives = 336/548 (61%), Gaps = 31/548 (5%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            +KKKV    K I+LS+SE CS      S     PC+ F W    D  L+ A  +L++ +C
Sbjct: 977  RKKKVNQYLKNIELSFSESCS------SSHPAAPCLTF-WLKNHDSDLDNAVKVLSENIC 1029

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVL +T+IKGDPR+S+A++IW+SPDT TW+R+P KS  GELA+DI LE+EAV +SGDAWR
Sbjct: 1030 PVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIVLEEEAVKQSGDAWR 1089

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            +V+DSCLPV HLID++RSIPYAIKQI+ LLGISC F+QA+QR++ SV MV KGVL++HL+
Sbjct: 1090 IVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKGVLREHLI 1149

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL +SMTC G L+GFNTGG K+LS+ L++QVPF +ATLFTP+KCFERAAEKC+ D+LSSI
Sbjct: 1150 LLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSI 1209

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTL-EDAGTSCLGA 657
            V SC+WGKHV+VGTGS F+I+W +  +     E +DVY+FL MV S T  E+   +CLG 
Sbjct: 1210 VASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKSVTNGEEETDACLGE 1269

Query: 656  EIXXXXXXXXXDFELSPVRDSGAEKPTFEDIIGDSNGISKEDDGGW--SSLGTKAE---- 495
            +I         D  +SP  +SG E   FE+     NG       GW  SS  T+++    
Sbjct: 1270 DIDDLLEEEYMDLGMSPQHNSGFE-AVFEENPEVLNG---STSNGWDVSSNQTQSKTNEW 1325

Query: 494  -GWNSN-----------SAWGKKVDYDEPSDASGWESKKADESTPSTAWGSSNKESESND 351
             GW S+           ++WGK V+ ++ S ++ W       +T +TA  +  K +E +D
Sbjct: 1326 SGWASSNKDGRSETAQENSWGKTVNQEDSSKSNAW-------NTSTTADQTKTKSNEWSD 1378

Query: 350  WNPIKKK--SNDSTPSQDWGSKQNTWETKVADESTHSK-----AWGSSNKESESNNWHSF 192
            W   K +  +  S   Q+  SK N W T      T +K     AWGS+  E  +    + 
Sbjct: 1379 WGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKSEIPACGSKAV 1438

Query: 191  QKNSNDSTPAQSWGSKNDTWETKVADESTPSK-----AWGSSNKESGSNDAAGWGSKVAD 27
            Q++S          SK++TW T    + T +K     AWGS+  E      AG    V +
Sbjct: 1439 QEDS----------SKSNTWNTSTTADQTKTKSNEWSAWGSNKSEI----PAGGSKAVQE 1484

Query: 26   DATPSKAW 3
            D++ S AW
Sbjct: 1485 DSSKSNAW 1492


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  432 bits (1112), Expect = e-118
 Identities = 247/555 (44%), Positives = 334/555 (60%), Gaps = 41/555 (7%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KK  +G  FK   L  SE CSF  S   K ++ PC+ FF Q   D+         AD +C
Sbjct: 981  KKFNIGYHFKNTVLFASEHCSFHHSCAEKRSDSPCLMFFLQATDDLETTTTLQYYADLIC 1040

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+T+IKGDPR+ +AN+IWI PDT TWIRSP KS KGE A+DI LEK  + +SGDAWR
Sbjct: 1041 PVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGEWALDIVLEKSVIKQSGDAWR 1100

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
             V+DSCLPV HLID++RSIPYAIKQI+ LLG+SCAF+QAVQRLST+VTMV KGVLK+HL+
Sbjct: 1101 TVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQRLSTAVTMVAKGVLKEHLI 1160

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMTCAG  +GFN+ G K+LS++L++QVPF  ATLFTPRKCFERAAEKC++D+L+SI
Sbjct: 1161 LLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTPRKCFERAAEKCHMDSLASI 1220

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            V SC+WGKHV+VGTG  F+++W T+ V +  +  +DV+NFL MV+++ +E+A T  LGAE
Sbjct: 1221 VASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGLDVFNFLHMVSTANVEEATTGALGAE 1280

Query: 653  I-XXXXXXXXXDFELSPVRDSGAEKPTFEDII------GD---------SNGISKEDDGG 522
            +          D   SP  +S  ++P FED++      GD          +    + +GG
Sbjct: 1281 VDDLMLVDEMADSSFSPELNSSFDRPVFEDLVEFDDKLGDLPEKSNWEKDSSFHTDSNGG 1340

Query: 521  --WS---SLGTKA--EGWNSNSAWG--KKVDYDEPSDASGWESKKADESTPSTAWGSS-N 372
              WS   ++GT A  + W   S+WG  K    D  S  +  +SKK+     S+AWG +  
Sbjct: 1341 KDWSVDKNVGTVAVPDVW---SSWGTEKGKTQDSNSAEAQLDSKKSSVLDTSSAWGKNPA 1397

Query: 371  KESESNDWNPIKKKSND-----------STPSQDWGSKQNT---WETKVADESTHSKAWG 234
            KE+ ++ W       ND           +T S       NT   W T  A E   S AWG
Sbjct: 1398 KENTTSTWGTTTASENDWCGRGVGEDDSATLSGKKSGVLNTSSAWATNTAREDAAS-AWG 1456

Query: 233  SS-NKESESNNWHSFQKNSNDSTPAQSWGSKNDTWETKVADESTPSKAWGSSNKESGSND 57
            ++  KE+ ++ W + + N ND    +     + +   K +     S AW ++     +  
Sbjct: 1457 TNPAKENSTSTWGTTRANENDWCGREVGQDDSASLSVKKSSVLDTSSAWATNTAREDA-- 1514

Query: 56   AAGWGSKVADDATPS 12
            A+ WG   A + T S
Sbjct: 1515 ASAWGKHPAKENTTS 1529


>ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutrema salsugineum]
            gi|557112419|gb|ESQ52703.1| hypothetical protein
            EUTSA_v10016128mg [Eutrema salsugineum]
          Length = 1874

 Score =  429 bits (1102), Expect = e-117
 Identities = 241/538 (44%), Positives = 331/538 (61%), Gaps = 34/538 (6%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKK  + FKR +LS+SECCSF     SK +++PC+ F    A+D  LER  D+L  T+ 
Sbjct: 970  KKKKKADDFKRTNLSFSECCSFRDPCASKDSDMPCLMFSSYNATDPDLERTLDVLCHTIY 1029

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+TVIKGDPR+ +AN+ W SP+T TWI +   S +GE  +D+T+EK AV +SGDAWR
Sbjct: 1030 PVLLETVIKGDPRIFSANITWNSPETTTWIWNRHASRRGEWVLDVTVEKSAVKQSGDAWR 1089

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            VVMDSCL V HLID+ RSIPY+IKQ++ LLG+SCAFEQAVQRLS SV MV+KGVLK+H++
Sbjct: 1090 VVMDSCLSVLHLIDTTRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHII 1149

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            L+ N+MTC+G ++GFN+GG K+L++SL+++ PF  ATL TPRKCFE+AAEKC+ D+LS++
Sbjct: 1150 LVANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKCFEKAAEKCHTDSLSTV 1209

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            VGSC+WGK V VGTGS FE++W  K   +  + E DVY+FL+MV S+T  DA  S  G +
Sbjct: 1210 VGSCSWGKRVDVGTGSKFELLWNKKETGLENENETDVYSFLQMVRSTTNADAYASSPGFD 1269

Query: 653  IXXXXXXXXXDFELSPVRDSGAEKPTFEDIIGDSN--GISKEDDGGWSSLGTKAEGW--- 489
            +         ++  SP RDS   +  FED     N     K  +  W +  +    W   
Sbjct: 1270 V---TEEDMAEWAESPERDSALGELKFEDSAEFQNIHDEGKPSESKWDNGFSGGSEWDLS 1326

Query: 488  -------NSNSAWGKKVDYDEPSDASGWESKK-ADESTPS---TAWGSSNKESESN---- 354
                   N  S W K  + ++   +SGW SKK A ES+ S    AWGS  K++++N    
Sbjct: 1327 RNTGGEENPQSGWEKTTNVEKEDASSGWNSKKDAQESSRSDSWRAWGSKPKDNDANTTPS 1386

Query: 353  -DWNPIKKKS---NDSTPSQD-WGSK---QNTWETKVADESTHSKAWGSSNK-----ESE 213
             +  P +K S    ++ PS D WG K   +  W+ K +   +   AW S +K     E +
Sbjct: 1387 WETRPAQKDSMVIENNEPSVDVWGPKSVSEKVWKKKNSKTESAPAAWVSRDKKNSETELD 1446

Query: 212  SNNWHSFQK-NSNDSTPAQSWGSKNDTWETKVADESTPSKAWGSSNKESGSNDAAGWG 42
            ++ W    K N    T A +WG+    ++     ES    +WG    E+ S D AGWG
Sbjct: 1447 ASAWGFGDKVNKETETDAAAWGA---GYKMNKETESAAWGSWGEKRSETESGD-AGWG 1500


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score =  428 bits (1100), Expect = e-117
 Identities = 246/558 (44%), Positives = 332/558 (59%), Gaps = 55/558 (9%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKK  + FKR  LS S+CCSF     SK +++PC+ F +  A++  LER  D+L +T+ 
Sbjct: 971  KKKKATDDFKRTSLSVSDCCSFRDPCGSKDSDMPCLMFSYN-ATNPDLERTLDVLCNTIY 1029

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+TVIKGDPR+ +AN+IW S D  TWIR+   S +GE  +D+T+EK AV +SGDAWR
Sbjct: 1030 PVLLETVIKGDPRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWR 1089

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            VV+DSCL V HLID++RSIPY+IKQ++ LLG+SCAFEQAVQRLS SV MV+KGVLK+H++
Sbjct: 1090 VVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVKMVSKGVLKEHII 1149

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL N+MTC+G ++GFN+GG K+L++SL+++ PF  ATL TPRKCFE+AAEKC+ D+LS++
Sbjct: 1150 LLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKCFEKAAEKCHTDSLSTV 1209

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            VGSC+WGK V VGTGS FE++W  K   +   EE DVY+FL+MV S+T  DA  S  G +
Sbjct: 1210 VGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVRSTTSSDAFVSSPGFD 1269

Query: 653  IXXXXXXXXXDFELSPVRDSGAEKPTFEDIIGDSN--GISKEDDGGWSSLGTKAEGWNSN 480
            +         ++  SP RDS   +P FED     N     K+ +  W    +   G +  
Sbjct: 1270 V---TEEEMAEWAESPERDSALGEPKFEDSAEFQNLHDDGKQSESNWEKSSSWDNGCSGG 1326

Query: 479  SAWG---------------KKVDYDEPSDA-SGWESKK-ADESTPST---AWGSSNKESE 360
            S WG               +K    E  DA SGW +KK A ES+ S    AWG   K+ +
Sbjct: 1327 SEWGVSKSTGGESNTESNWEKTTSVEKEDAWSGWNTKKDAQESSKSDSGGAWGIKTKDDD 1386

Query: 359  SN---DWNPIKKKSNDSTP------SQDWGSK--------QNTWETKVADE---STHSKA 240
            +N   +W     + +   P      S  WG K        +  W T+ A     ST + A
Sbjct: 1387 ANTTPNWETRPAQMDSIVPEINEPTSDVWGLKSVSEKPWNKKNWGTESAPAAWGSTDADA 1446

Query: 239  WGSSNKESESNNWHSFQKNSNDSTPAQSWGSKN-------------DTWETKVADESTPS 99
            WGSSNK           KNS   + A +WGS++               W  K ++  + +
Sbjct: 1447 WGSSNK-----------KNSETESDAAAWGSRDKRNSDIGSGAGVLGPWNKKSSETESDA 1495

Query: 98   KAWGSSNKESGSNDAAGW 45
             AWGSS K    +DAA W
Sbjct: 1496 AAWGSSGKT--KSDAATW 1511



 Score = 70.9 bits (172), Expect = 2e-09
 Identities = 75/312 (24%), Positives = 128/312 (41%), Gaps = 48/312 (15%)
 Frame = -2

Query: 830  GSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAEI 651
            G   WG   S G  S  E  W  K+ ++  ++    +N  +    S+  D+G    G + 
Sbjct: 1325 GGSEWGVSKSTGGESNTESNW-EKTTSVEKEDAWSGWNTKKDAQESSKSDSG-GAWGIKT 1382

Query: 650  XXXXXXXXXDFELSPVRDSGAEKPTFEDIIGDSNGISKEDDGGWS--SLGTKAE--GWNS 483
                     ++E  P +      P   +   D  G+    +  W+  + GT++    W S
Sbjct: 1383 KDDDANTTPNWETRPAQMDSIV-PEINEPTSDVWGLKSVSEKPWNKKNWGTESAPAAWGS 1441

Query: 482  NSA--WGK--KVDYDEPSDASGWES--------------------KKADESTPSTAWGSS 375
              A  WG   K + +  SDA+ W S                    K ++  + + AWGSS
Sbjct: 1442 TDADAWGSSNKKNSETESDAAAWGSRDKRNSDIGSGAGVLGPWNKKSSETESDAAAWGSS 1501

Query: 374  NK-ESESNDWNPIKKKS--NDSTPSQDWGSKQNTWETKVADESTHSKAWGSSNK-ESESN 207
             K +S++  W+P  K +   DS P+  WGS+ N       +  ++  +WGSS K +S + 
Sbjct: 1502 GKTKSDAATWSPWDKNNMEPDSEPA-GWGSQGNM--KSETETESNGASWGSSGKTKSGAA 1558

Query: 206  NWHSFQKNSNDSTPAQS-WGSKN-------------DTWETKVADESTPSKAWGSSNKES 69
             W S  KN+ ++    S WGS+                W+ K+++  +    WG+ +K +
Sbjct: 1559 AWGSCDKNNMETNSEPSAWGSQGKKKAETESGPASWGAWDKKISETESGLAGWGNGDKIN 1618

Query: 68   GSND--AAGWGS 39
               +  AA WGS
Sbjct: 1619 SETESGAAAWGS 1630


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  426 bits (1096), Expect = e-116
 Identities = 244/549 (44%), Positives = 329/549 (59%), Gaps = 32/549 (5%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            +KKK+G   K+  LS SECC+F +S     +  PC+    +   +  LE +S ILAD++C
Sbjct: 971  RKKKLGKHLKKAVLSVSECCTFHKSGLDGTSEFPCLLISIRENMNDTLEESSKILADSIC 1030

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            P LL+T+IKGD R+S+A + W+S DT T IRSP  S  GELAVD+ L+K A+ +SGDAWR
Sbjct: 1031 PFLLETIIKGDSRISSAKITWLSSDT-TSIRSPQNSDMGELAVDVVLDKSAIKRSGDAWR 1089

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            +V+DSCLPV HLID++RSIPY IKQI+ LLGISCAF+QAVQRLSTSV+MV+KGVLK+HL+
Sbjct: 1090 IVIDSCLPVLHLIDTRRSIPYGIKQIQELLGISCAFDQAVQRLSTSVSMVSKGVLKEHLI 1149

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL NSMT AG LIGFN+GG K+L++SL+VQVPF  ATL TP++CFERAAEKC+VD+L+SI
Sbjct: 1150 LLANSMTYAGNLIGFNSGGYKALTRSLNVQVPFTEATLITPKRCFERAAEKCHVDSLTSI 1209

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            V SC+WGKHV+VGTGS F+I+W T+ V       +DV NFL MV+++  E+A T+CLG E
Sbjct: 1210 VASCSWGKHVAVGTGSRFDILWDTRKVEFNQAGGVDVNNFLHMVSTAYGEEASTACLGEE 1269

Query: 653  IXXXXXXXXXDFELSPVRDSGAEKPTFEDIIGDSNGISKEDDGG---WSSLGTKAEGWNS 483
            I                 +  +++P FED I +   IS++D  G   W +L +   G +S
Sbjct: 1270 IDDLMPGDDIAELCLSPENFNSDRPVFED-IDEFQDISEKDLPGKSSWDNLSSFRSGSSS 1328

Query: 482  NSAWGKKVDYDEPSD-ASGWESKKADE-------STPSTAW--GSSNK-------ESESN 354
               WG   +     D  S W +   +E         P  +W  G  NK       E+  +
Sbjct: 1329 GKEWGSNNNVGTKYDVGSSWGTANKEEQEVIPSKGEPDNSWSNGWENKNSGRMELETMKS 1388

Query: 353  DW--------NPIKKKSNDSTPSQDWGSKQNTWETKVADESTHSKAWGSSNKESESNNWH 198
            DW        NP   K  +S+   D       W T  A E   S    +S   S    W 
Sbjct: 1389 DWRGDADERHNPFSSKPQESSKRSDVWDATPGWGTNTASEKVSSSTGWNSENISSGAGW- 1447

Query: 197  SFQKNSNDSTPAQSWGSKNDT----WETKVADESTPSKAWGSSNKESGSNDAAGWGSKVA 30
               K  +D++ A+ W S+N +    W +K   +++ +K W S N  SG    AGW SK  
Sbjct: 1448 --SKADSDNSHAKGWNSENISSGAGW-SKAGSDNSHAKGWKSENISSG----AGW-SKAD 1499

Query: 29   DDATPSKAW 3
             D + +K W
Sbjct: 1500 SDNSHAKGW 1508



 Score = 72.0 bits (175), Expect = 7e-10
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 11/185 (5%)
 Frame = -2

Query: 524  GWS---SLGTKAEGWNSNSAWGKKVDYDEPSDASGWESKKADESTPSTAWGSSNKESESN 354
            GWS   S  + A+GWNS +           S  +GW    +D S+ +  W S N  S + 
Sbjct: 1494 GWSKADSDNSHAKGWNSENI----------SSGAGWSKAGSDNSSHAKGWNSENISSGAG 1543

Query: 353  DWNPIKKKSNDSTPSQDWGSKQNT----WETKVADESTHSKAWGSSNKESESNNWHSFQK 186
             W+   K  +D++ ++ W S+  +    W +K   +++H+K W S N  S +  W   + 
Sbjct: 1544 -WS---KADSDNSHAKGWNSENISSGAGW-SKAGSDNSHAKGWNSENISSGA-GWS--KA 1595

Query: 185  NSNDSTPAQSWGSKNDT----WETKVADESTPSKAWGSSNKESGSNDAAGWGSKVADDAT 18
             S++S+ A+ W S+N +    W  + +D S  +K W S N  SG    AGW SK   D +
Sbjct: 1596 GSDNSSHAKGWNSENISSGAGWSKEDSDNS-HAKGWNSENISSG----AGW-SKAGSDNS 1649

Query: 17   PSKAW 3
             +K W
Sbjct: 1650 HAKGW 1654



 Score = 68.2 bits (165), Expect = 1e-08
 Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 39/206 (18%)
 Frame = -2

Query: 503  KAEGWNSNSAWGKKVDYDEPSDASGWESK---------KAD-ESTPSTAWGSSNKESESN 354
            +++ W++   WG     ++ S ++GW S+         KAD +++ +  W S N  S + 
Sbjct: 1411 RSDVWDATPGWGTNTASEKVSSSTGWNSENISSGAGWSKADSDNSHAKGWNSENISSGAG 1470

Query: 353  DWNPIKKKSNDSTPSQDWGSKQNT----WETKVADESTHSKAWGSSN------------- 225
             W+   K  +D++ ++ W S+  +    W +K   +++H+K W S N             
Sbjct: 1471 -WS---KAGSDNSHAKGWKSENISSGAGW-SKADSDNSHAKGWNSENISSGAGWSKAGSD 1525

Query: 224  KESESNNWHS--------FQKNSNDSTPAQSWGSKNDT----WETKVADESTPSKAWGSS 81
              S +  W+S        + K  +D++ A+ W S+N +    W +K   +++ +K W S 
Sbjct: 1526 NSSHAKGWNSENISSGAGWSKADSDNSHAKGWNSENISSGAGW-SKAGSDNSHAKGWNSE 1584

Query: 80   NKESGSNDAAGWGSKVADDATPSKAW 3
            N  SG    AGW    +D+++ +K W
Sbjct: 1585 NISSG----AGWSKAGSDNSSHAKGW 1606



 Score = 58.9 bits (141), Expect = 6e-06
 Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 10/180 (5%)
 Frame = -2

Query: 563  IGDSNGISKEDDGGWSSLGTKAEGWNSNSAWGKKVDYDEPSDASGWESKKADESTPSTAW 384
            I    G SKED     + G  +E  +S + W K     + S A GW S+        +  
Sbjct: 1611 ISSGAGWSKEDSDNSHAKGWNSENISSGAGWSKAGS--DNSHAKGWNSENISSGARWSKA 1668

Query: 383  GSSNKESESNDWNPIKKKSNDSTPS--QDW----GSKQNTWETKVADESTHSKAWGS-SN 225
             S N  ++S DWN    ++   T +    W      K++   TK   +   +  WG+ SN
Sbjct: 1669 DSDNTHAKSTDWNTTSDRTKTMTKNTWSGWHGEKSEKEDILSTKSQQDLPRNSDWGAVSN 1728

Query: 224  KESESNNWHSFQKNSNDSTPAQSWGSKNDTWETKVADESTPSKA---WGSSNKESGSNDA 54
            +E+ +   + F        P     S+   W+ K+    TP KA   W SSN E  + DA
Sbjct: 1729 RENNAERAYEFVSKDQ---PLPDQVSEPCDWDNKL----TPQKAVSGWLSSNDEGWTKDA 1781


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  424 bits (1089), Expect = e-116
 Identities = 242/569 (42%), Positives = 339/569 (59%), Gaps = 52/569 (9%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            +KKKV    K I+LS+SE CS      S     PC+ F W    D  L+ A  +LA+ +C
Sbjct: 977  QKKKVNQSLKNIELSFSESCS------SSHPAAPCLTF-WLKNYDSDLDNAVKVLAEKIC 1029

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVL +T+I+GDPR+S+A++IW+SPDT TW+R+P KS  GELA+DI LEKEAV +SGDAWR
Sbjct: 1030 PVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIILEKEAVKQSGDAWR 1089

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            VV+D+CLPV HLID++RSIPYAIKQI+ LLGISC F+QA+QR++ SV MV KGVL++HL+
Sbjct: 1090 VVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKGVLREHLI 1149

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL +SMTC G L+GFN GG K+LS+ L++QVPF +ATLFTP+KCFERAAEKC+ D+LSSI
Sbjct: 1150 LLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSI 1209

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTL-EDAGTSCLGA 657
            V SC+WGKHV+VGTGS F+++W    +     E +DVY+FL MV S T  E+   +CLG 
Sbjct: 1210 VASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLHMVKSFTNGEEETDACLGE 1269

Query: 656  EIXXXXXXXXXDFELSPVRDSGAEKPTFED-------------IIGDSNGISKEDD-GGW 519
            +I         D  +SP  +SG E   FE+              +  + G SK ++  GW
Sbjct: 1270 DIDDLLEEEYMDLGMSPQHNSGFE-AVFEENPEVLNGSTSNGWDVSSNQGESKTNEWSGW 1328

Query: 518  SSLGTKAEGWNSNS------AWGKKVDYDEPSDASGWESKKADESTPS-----TAWGSSN 372
            +S   KAE  +  S      +WGK V+ ++ S ++ W +    + T +     +AWGS+ 
Sbjct: 1329 AS-SNKAEIKDGRSEIAPKNSWGKTVNQEDSSKSNPWSTSTIADQTKTKSNEWSAWGSNK 1387

Query: 371  KES----ESNDWNPIKKKSNDSTPSQDWG--------SKQNTWETKVADESTHSK----- 243
             E      S++   IK   +++     WG        SK N W T    +  ++K     
Sbjct: 1388 SEIPVGWASSNKTEIKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTVDHANTKSNEWS 1447

Query: 242  AWGSSNKESESNNWHSFQKNSNDSTP-----AQSWGSKNDTWETKVADESTPSK--AWGS 84
            AWGS+  E  +    + Q++S  S+      AQ   S+   W+   AD++  S+   WG 
Sbjct: 1448 AWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTKSSEWSGWGK 1507

Query: 83   SN--KESGSNDAAGWGSKVADDATPSKAW 3
                 +  ++    W +  AD  T S+ W
Sbjct: 1508 KKDVTQEDNSRLGAWDANAADQ-TKSRDW 1535



 Score = 68.6 bits (166), Expect = 8e-09
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 8/194 (4%)
 Frame = -2

Query: 560  GDSNGISKEDD---GGWSSLGTKAEGWNSNSAWGKKVDY--DEPSDASGWESKKADESTP 396
            G    +++ED+   G W +        N  S WGKK D   ++ S    W++  AD++  
Sbjct: 1638 GKKKEVTQEDNSRFGAWDANAEDQTKSNEWSGWGKKKDVTQEDNSRLGAWDANAADQT-- 1695

Query: 395  STAWGSSNKESESNDWNPIKKKSNDSTPSQDWGSKQNTWETKVADESTHSKAWGSSNKE- 219
                    K +E +DW   K+ + +      WGS +   +    ++++ S  WG++  + 
Sbjct: 1696 --------KSNEWSDWGKKKEVTQEDNVQDSWGSGKRK-DKVTQEDNSGSGGWGANRTDL 1746

Query: 218  --SESNNWHSFQKNSNDSTPAQSWGSKNDTWETKVADESTPSKAWGSSNKESGSNDAAGW 45
              S+S+ W S+ KN ++     S   +ND+W +   ++ T  +  GS+   + +    G 
Sbjct: 1747 AKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGG 1806

Query: 44   GSKVADDATPSKAW 3
              K  +DA  S  W
Sbjct: 1807 SEKPQEDAWNSGNW 1820



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 35/233 (15%)
 Frame = -2

Query: 596  SGAEKPTFEDIIGDSN---GISKEDD---GGWSSLG---TKAEGWNSNSAWGKKVDY--D 450
            +G  K   ED  G S     +++ED+   G W +     TK+  W   S WGKK D   +
Sbjct: 1458 AGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTKSSEW---SGWGKKKDVTQE 1514

Query: 449  EPSDASGWESKKADE--STPSTAWGSSNKESESND-----WNPIKKKSNDSTPSQDWGSK 291
            + S    W++  AD+  S   + WG     ++ ++     W+        S+    WG K
Sbjct: 1515 DNSRLGAWDANAADQTKSRDWSGWGKKKDITQEDNSRLGAWDANAADQTKSSEWSGWGKK 1574

Query: 290  QNT----------WETKVADESTHSK--AWGSSNKESESNNWH--SFQKNSNDSTPAQSW 153
            ++           W+   AD++  ++   WG   + ++ +N    ++  N+ D T +  W
Sbjct: 1575 KDVTQEDNSRLGAWDANTADQTKSNEWSGWGKKKEVTQEDNSRLGAWDANTADQTKSNEW 1634

Query: 152  GSKNDTWETKVADESTPSKAWGSSNKESGSNDAAGWGSK---VADDATPSKAW 3
                   E    D S       ++  ++ SN+ +GWG K     +D +   AW
Sbjct: 1635 SGWGKKKEVTQEDNSRFGAWDANAEDQTKSNEWSGWGKKKDVTQEDNSRLGAW 1687


>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
          Length = 1976

 Score =  422 bits (1085), Expect = e-115
 Identities = 244/565 (43%), Positives = 337/565 (59%), Gaps = 48/565 (8%)
 Frame = -2

Query: 1553 KKKKVGNLFKRIDLSYSECCSFCQSSKSKWTNVPCIQFFWQGASDVLLERASDILADTVC 1374
            KKKK  + FKR  LS SECCSF     SK +++PC+ F +  A+D  LER  D+L +TV 
Sbjct: 971  KKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYN-ATDPDLERTLDVLCNTVY 1029

Query: 1373 PVLLQTVIKGDPRVSTANLIWISPDTATWIRSPCKSPKGELAVDITLEKEAVTKSGDAWR 1194
            PVLL+ VIKGD R+ +AN+IW S D  TWIR+   S +GE  +D+T+EK AV +SGDAWR
Sbjct: 1030 PVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWR 1089

Query: 1193 VVMDSCLPVFHLIDSQRSIPYAIKQIEHLLGISCAFEQAVQRLSTSVTMVTKGVLKDHLL 1014
            VV+DSCL V HLID++RSIPY++KQ++ LLG+SCAFEQAVQRLS SV MV+KGVLK+H++
Sbjct: 1090 VVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHII 1149

Query: 1013 LLGNSMTCAGTLIGFNTGGIKSLSKSLDVQVPFMNATLFTPRKCFERAAEKCNVDNLSSI 834
            LL N+MTC+GT++GFN+GG K+L++SL+++ PF  ATL  PRKCFE+AAEKC+ D+LS++
Sbjct: 1150 LLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTV 1209

Query: 833  VGSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAE 654
            VGSC+WGK V VGTGS FE++W  K   +   EE DVY+FL+MV S+T  DA  S  G +
Sbjct: 1210 VGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVISTTNADAFVSSPGFD 1269

Query: 653  IXXXXXXXXXDFELSPVRDSGAEKPTFEDII--------GDSNGISKEDDGGWSSLGTKA 498
            +         ++  SP RDS   +P FED          G  +G + E    W +  +  
Sbjct: 1270 V---TEEEMAEWAESPERDSALGEPKFEDSADFQNLHDEGKPSGANWEKSSSWDNGCSGG 1326

Query: 497  EGW----------NSNSAWGKKVDYDEPSDASGWESKK-ADESTPST---AWGSSNKESE 360
              W          N  S W K  + ++    S W ++K A ES+ S    AWG   K+++
Sbjct: 1327 SEWGVSKSTGGEANPESNWEKTTNVEKEDAWSSWNTRKDAQESSKSDSGGAWGIKTKDAD 1386

Query: 359  SN---DW--NPIKKKS----NDSTPSQDWGSK---QNTWETK--------VADESTHSKA 240
            ++   +W  +P  K S    N+   S  WG K     +W+ K         A  ST +  
Sbjct: 1387 ADTTPNWETSPAPKDSIVPENNEPTSDVWGHKSVSDKSWDKKNWGTESAPAAWGSTDAAV 1446

Query: 239  WGSSNK-----ESESNNWHSFQKNSNDSTPAQSWGSKNDTWETKVADESTPSKAWGSSNK 75
            WGSS+K     ES++  W S  KN++D     S       W  K ++  +    WGSS+K
Sbjct: 1447 WGSSDKKNSETESDAAAWGSRDKNNSD---VGSGAGVLGPWNKKSSETESNGATWGSSDK 1503

Query: 74   -ESGSNDAAGWGSKVADDATPSKAW 3
             +SG+     W  K  +  +   AW
Sbjct: 1504 TKSGAAAWNSWDKKNIETDSEPAAW 1528



 Score = 76.6 bits (187), Expect = 3e-11
 Identities = 85/334 (25%), Positives = 132/334 (39%), Gaps = 58/334 (17%)
 Frame = -2

Query: 830  GSCAWGKHVSVGTGSPFEIIWGTKSVNMMVDEEIDVYNFLRMVNSSTLEDAGTSCLGAEI 651
            G   WG   S G  +  E  W  K+ N+  ++    +N  +    S+  D+G    G + 
Sbjct: 1325 GGSEWGVSKSTGGEANPESNW-EKTTNVEKEDAWSSWNTRKDAQESSKSDSG-GAWGIKT 1382

Query: 650  XXXXXXXXXDFELSPVRDSGAEKPTFEDIIGDSNGISKEDDGGWSSLGTKA---EGWNSN 480
                     ++E SP           +D I   N     D  G  S+  K+   + W + 
Sbjct: 1383 KDADADTTPNWETSPAP---------KDSIVPENNEPTSDVWGHKSVSDKSWDKKNWGTE 1433

Query: 479  SA---WGKKVDYDEPSDASGWES---KKADESTPSTAWGSSNKESES--------NDWNP 342
            SA   WG        +DA+ W S   K ++  + + AWGS +K +            WN 
Sbjct: 1434 SAPAAWGS-------TDAAVWGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWN- 1485

Query: 341  IKKKSNDSTPSQDWGSKQ---------NTWETKVADESTHSKAWGSS---NKESESNN-- 204
             KK S   +    WGS           N+W+ K  +  +   AWGS    N E+ES    
Sbjct: 1486 -KKSSETESNGATWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETESGPAA 1544

Query: 203  WHSFQKNSNDSTPAQS-WG---SKND----------TWETKVADE--------STPSKAW 90
            W ++ K  +++ P  + WG    KN            W+ K +D         ST + AW
Sbjct: 1545 WGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDAAAW 1604

Query: 89   GSSNKESGS--NDAAGWGS---KVADDATPSKAW 3
            GSS+K +    +DAA WGS   K ++  + + AW
Sbjct: 1605 GSSDKNNSETESDAAAWGSRNKKTSEIESGAGAW 1638



 Score = 61.6 bits (148), Expect = 9e-07
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 29/192 (15%)
 Frame = -2

Query: 527  GGWSSLGTKAEGWNSNSAWGKKVDYDEPSDA-SGWESKKADESTPSTAWGSSNKESESND 351
            G W+   ++ E  ++ + WG        + A + W+ K  +  +   AWGS  K++   +
Sbjct: 1482 GPWNKKSSETE--SNGATWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETE 1539

Query: 350  WNPI------KKKSNDSTPSQDW--GSKQNT-----------WETKVADESTHSKAWGSS 228
              P       KKKS        W  G K+N+           W+ K +D  +   AWGS+
Sbjct: 1540 SGPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGST 1599

Query: 227  NKESESNNWHSFQKNSNDS-TPAQSWGSKNDTWETKVADESTPSKAWGS--------SNK 75
            +  +    W S  KN++++ + A +WGS+N     K ++  + + AWGS         +K
Sbjct: 1600 DAAA----WGSSDKNNSETESDAAAWGSRN----KKTSEIESGAGAWGSWGQPSPTAEDK 1651

Query: 74   ESGSNDAAGWGS 39
            ++  +D   W S
Sbjct: 1652 DTNEDDRNPWVS 1663