BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00021266
         (427 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Mimulus...   219   3e-55
gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlise...   171   1e-40
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   161   1e-37
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   152   5e-35
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   152   6e-35
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   152   6e-35
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...   151   8e-35
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              151   1e-34
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   142   4e-32
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   142   4e-32
ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phas...   142   5e-32
ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phas...   142   5e-32
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   142   5e-32
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   138   9e-31
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun...   136   3e-30
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   134   2e-29
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub...   133   2e-29
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub...   133   2e-29
ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi...   129   3e-28
ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabi...   127   1e-27

>gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Mimulus guttatus]
          Length = 1379

 Score =  219 bits (558), Expect = 3e-55
 Identities = 105/143 (73%), Positives = 120/143 (83%), Gaps = 1/143 (0%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           EC + GAK  RDCEGHFG+I FPFTILNPY+MSEV+QILNKICPGCK+ RH K K+  S 
Sbjct: 57  ECATCGAKNSRDCEGHFGLIKFPFTILNPYYMSEVSQILNKICPGCKTFRHSKTKNADSS 116

Query: 247 SSH-QSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSDGVLASDYW 71
           S+H QSR+CRYC+GK KDGYPKM F+VSSKDVFAKSAIIAEV E  V+KCS G LA DYW
Sbjct: 117 SAHNQSRNCRYCSGKSKDGYPKMTFRVSSKDVFAKSAIIAEVKEILVNKCSSGNLAYDYW 176

Query: 70  DVLPKDSAQENSSLPANKRVLLP 2
           DV+PKDSA E++ LP N+RVLLP
Sbjct: 177 DVIPKDSAVEHAVLPPNRRVLLP 199


>gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlisea aurea]
          Length = 1380

 Score =  171 bits (432), Expect = 1e-40
 Identities = 84/142 (59%), Positives = 108/142 (76%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           EC + GA   ++CEGHFGVINF +TILNPY+M E+A ILNKICPGCKS+R  KIK   S 
Sbjct: 27  ECLTCGANSAKECEGHFGVINFNYTILNPYYMPEIANILNKICPGCKSIRQRKIKKGDSA 86

Query: 247 SSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSDGVLASDYWD 68
           S    ++C+YCN     GYPKMKF+VS+++VFAK+AIIAEV E +V++     LASDYWD
Sbjct: 87  S---QQNCKYCN-VTSLGYPKMKFRVSTREVFAKTAIIAEVQEMAVNQHHCIGLASDYWD 142

Query: 67  VLPKDSAQENSSLPANKRVLLP 2
           ++PKDS Q+ S +P+N+RVL P
Sbjct: 143 IIPKDSPQDQSDIPSNRRVLYP 164


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
           cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
           polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  161 bits (407), Expect = 1e-37
 Identities = 83/144 (57%), Positives = 100/144 (69%), Gaps = 5/144 (3%)
 Frame = -1

Query: 424 CTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMR-HIKIKDVHSP 248
           CT+ GA   + CEGHFGVINFP+ IL+PYF+SEV QILNKICPGCKS+R  ++IK  +S 
Sbjct: 60  CTTCGAADMKHCEGHFGVINFPYAILHPYFLSEVVQILNKICPGCKSVRKDLRIKGANSV 119

Query: 247 SS-HQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETS---VSKCSDGVLAS 80
           S  +Q + C+YC G   D YP M FK+SSKD+F KSAII EV E S   V K     L S
Sbjct: 120 SKVNQRKGCKYCVGNSIDWYPPMNFKISSKDLFRKSAIIVEVSEKSSMKVRKRGKQALPS 179

Query: 79  DYWDVLPKDSAQENSSLPANKRVL 8
           DYWD +PKD  QE S +  N+RVL
Sbjct: 180 DYWDFIPKDEQQEESLIRPNRRVL 203


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  152 bits (384), Expect = 5e-35
 Identities = 79/146 (54%), Positives = 97/146 (66%), Gaps = 6/146 (4%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIK-IKDVHS 251
           +C++ GAK  + CEGHFGVI FPFTIL+PYF++EV QILNKICPGCKS R  + +K   S
Sbjct: 56  QCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADS 115

Query: 250 PSSH-QSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSD----GVL 86
            S   +S+ C+YC     D YP MKFKVSSKD+F K+AII E+ E    K        VL
Sbjct: 116 GSRRLRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVL 175

Query: 85  ASDYWDVLPKDSAQENSSLPANKRVL 8
             DYWD +PKD  QE + L  N+RVL
Sbjct: 176 PLDYWDFIPKDPQQEENCLNPNRRVL 201


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
           [Solanum tuberosum]
          Length = 1446

 Score =  152 bits (383), Expect = 6e-35
 Identities = 81/144 (56%), Positives = 104/144 (72%), Gaps = 4/144 (2%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           +CT+ GA   + CEGHFG++NFP+TILNPYF+SEVAQIL KICPGCKS+R  K+K     
Sbjct: 56  QCTTCGANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVK----- 110

Query: 247 SSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKC--SDGV-LASD 77
            S ++ +C+YC+G  + GYP  KFKVS KD+F ++AIIAEV E  + K   + GV LASD
Sbjct: 111 GSDRTSACKYCDGVLR-GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQQTTGVSLASD 169

Query: 76  YWDVLPKDSAQENSSLPAN-KRVL 8
           YWD +P D+ QE S   +N KRVL
Sbjct: 170 YWDFIPYDAQQEASVNSSNYKRVL 193


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score =  152 bits (383), Expect = 6e-35
 Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 6/146 (4%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           +CT+ GA   + CEGHFGVI FP+TI++PYF+SEVAQ+LNK+CPGCKS+R      V  P
Sbjct: 56  QCTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDP 115

Query: 247 SSHQSR--SCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSK----CSDGVL 86
           +S  +R   CRYC G  KD YP M+FK+S+ D+F KS I+ EV E    K     + G L
Sbjct: 116 TSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGL 175

Query: 85  ASDYWDVLPKDSAQENSSLPANKRVL 8
            SDYWD +PKD  QE S    N+++L
Sbjct: 176 PSDYWDFIPKDEQQEESYCRPNRKIL 201


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
           lycopersicum]
          Length = 1446

 Score =  151 bits (382), Expect = 8e-35
 Identities = 80/144 (55%), Positives = 102/144 (70%), Gaps = 4/144 (2%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           +CT+ GA   + CEGHFG++NFP+TILNPYF+SEVAQIL KICPGCKS+R  K+K     
Sbjct: 56  QCTTCGANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVK----- 110

Query: 247 SSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGET---SVSKCSDGVLASD 77
            S ++ +C+YC+G  + GYP  KFKVS KD+F ++AIIAEV E     V K +   LASD
Sbjct: 111 VSDRTSACKYCDGVLR-GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQKTTGVSLASD 169

Query: 76  YWDVLPKDSAQENSSLPAN-KRVL 8
           YWD +P D+ QE S   +N KRVL
Sbjct: 170 YWDFIPYDAQQEASVNSSNYKRVL 193


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  151 bits (381), Expect = 1e-34
 Identities = 77/147 (52%), Positives = 97/147 (65%), Gaps = 7/147 (4%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRH---IKIKDV 257
           +C++ GAK  + CEGHFGVI FPFTIL+PYF++EV QILNKICPGCKS R    +K++ +
Sbjct: 56  QCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKVRRL 115

Query: 256 HSPSSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSD----GV 89
                 +S+ C+YC     D YP MKFKVSSKD+F K+AII E+ E    K        V
Sbjct: 116 ------RSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPV 169

Query: 88  LASDYWDVLPKDSAQENSSLPANKRVL 8
           L  DYWD +PKD  QE + L  N+RVL
Sbjct: 170 LPLDYWDFIPKDPQQEENCLNPNRRVL 196


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
           [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
           PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
           isoform X3 [Citrus sinensis]
           gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
           RNA polymerase IV subunit 1-like isoform X4 [Citrus
           sinensis]
          Length = 1443

 Score =  142 bits (359), Expect = 4e-32
 Identities = 68/140 (48%), Positives = 93/140 (66%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           EC+S GAK  + CEGHFG I FPFTIL+PYF+S++A++LN ICP CK++R  + K   S 
Sbjct: 57  ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSS 116

Query: 247 SSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSDGVLASDYWD 68
              Q R C+YC   P   YP+M+FK+SSKD+  K+AII E+ E    K  +  L  DYW 
Sbjct: 117 RKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKPSKK--NKKLPDDYWG 174

Query: 67  VLPKDSAQENSSLPANKRVL 8
            +P D+ QE +S+  N++VL
Sbjct: 175 FIPFDAQQEENSVKPNRKVL 194


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
           [Citrus sinensis]
          Length = 1481

 Score =  142 bits (359), Expect = 4e-32
 Identities = 68/140 (48%), Positives = 93/140 (66%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           EC+S GAK  + CEGHFG I FPFTIL+PYF+S++A++LN ICP CK++R  + K   S 
Sbjct: 95  ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSS 154

Query: 247 SSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSDGVLASDYWD 68
              Q R C+YC   P   YP+M+FK+SSKD+  K+AII E+ E    K  +  L  DYW 
Sbjct: 155 RKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKPSKK--NKKLPDDYWG 212

Query: 67  VLPKDSAQENSSLPANKRVL 8
            +P D+ QE +S+  N++VL
Sbjct: 213 FIPFDAQQEENSVKPNRKVL 232


>ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
           gi|561031869|gb|ESW30448.1| hypothetical protein
           PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1464

 Score =  142 bits (358), Expect = 5e-32
 Identities = 72/142 (50%), Positives = 93/142 (65%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           EC + G+K  + CEGHFGVI FPF IL+PYFMSE+AQILNKICP CKS+RH         
Sbjct: 56  ECATCGSKNKKICEGHFGVIKFPFPILHPYFMSEIAQILNKICPVCKSIRHKSKGAQLIF 115

Query: 247 SSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSDGVLASDYWD 68
              +S +C+YC+G     YP MKFK SS D++ ++AII EV + +  K     L +DYWD
Sbjct: 116 GIKRSINCKYCSGNGVGRYPAMKFKFSSNDLYRRTAIIVEVNDKASKKSLGRSLPADYWD 175

Query: 67  VLPKDSAQENSSLPANKRVLLP 2
            LP D+ QE + +  N+RVL P
Sbjct: 176 FLPYDAQQEENYV--NRRVLSP 195


>ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
           gi|561031868|gb|ESW30447.1| hypothetical protein
           PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1463

 Score =  142 bits (358), Expect = 5e-32
 Identities = 72/142 (50%), Positives = 93/142 (65%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           EC + G+K  + CEGHFGVI FPF IL+PYFMSE+AQILNKICP CKS+RH         
Sbjct: 56  ECATCGSKNKKICEGHFGVIKFPFPILHPYFMSEIAQILNKICPVCKSIRHKSKGAQLIF 115

Query: 247 SSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSDGVLASDYWD 68
              +S +C+YC+G     YP MKFK SS D++ ++AII EV + +  K     L +DYWD
Sbjct: 116 GIKRSINCKYCSGNGVGRYPAMKFKFSSNDLYRRTAIIVEVNDKASKKSLGRSLPADYWD 175

Query: 67  VLPKDSAQENSSLPANKRVLLP 2
            LP D+ QE + +  N+RVL P
Sbjct: 176 FLPYDAQQEENYV--NRRVLSP 195


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
           gi|557542783|gb|ESR53761.1| hypothetical protein
           CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  142 bits (358), Expect = 5e-32
 Identities = 68/140 (48%), Positives = 93/140 (66%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSP 248
           EC+S GAK  + CEGHFG I FPFTIL+PYF+S++A++LN ICP CK++R  + K   S 
Sbjct: 57  ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSS 116

Query: 247 SSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSDGVLASDYWD 68
              Q R C+YC   P   YP+M+FK+SSKD+  K+AII E+ E    K  +  L  DYW 
Sbjct: 117 RKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKK--NKKLPDDYWG 174

Query: 67  VLPKDSAQENSSLPANKRVL 8
            +P D+ QE +S+  N++VL
Sbjct: 175 FIPFDAQQEENSVKPNRKVL 194


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
           subunit 1-like [Vitis vinifera]
          Length = 1560

 Score =  138 bits (347), Expect = 9e-31
 Identities = 73/132 (55%), Positives = 87/132 (65%), Gaps = 6/132 (4%)
 Frame = -1

Query: 385 GHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIK-IKDVHSPSSH-QSRSCRYCN 212
           GHFGVI FPFTIL+PYF++EV QILNKICPGCKS R  + +K   S S   +S+ C+YC 
Sbjct: 103 GHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRRLRSKGCKYCA 162

Query: 211 GKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSD----GVLASDYWDVLPKDSAQ 44
               D YP MKFKVSSKD+F K+AII E+ E    K        VL  DYWD +PKD  Q
Sbjct: 163 ANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQ 222

Query: 43  ENSSLPANKRVL 8
           E + L  N+RVL
Sbjct: 223 EENCLNPNRRVL 234


>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
           gi|462406650|gb|EMJ12114.1| hypothetical protein
           PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  136 bits (342), Expect = 3e-30
 Identities = 70/149 (46%), Positives = 99/149 (66%), Gaps = 9/149 (6%)
 Frame = -1

Query: 427 ECTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMR--------HI 272
           +C++ GA+  + CEGHFG I FP TIL+PY++SEV QILNKICPGCKS+R        + 
Sbjct: 56  QCSTCGAEKLKCCEGHFGDIKFPCTILHPYYLSEVTQILNKICPGCKSIRQNLRAKVSNR 115

Query: 271 KIKDVHSPSSHQS-RSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSD 95
            ++   S   H+  + C+YC G     YP+MKFKVS++++F +SAIIAE         ++
Sbjct: 116 TLRGAGSVIGHRKLKGCKYCIGS-SINYPRMKFKVSTRELFKRSAIIAE---------AN 165

Query: 94  GVLASDYWDVLPKDSAQENSSLPANKRVL 8
           G+L +DYWD +PKD+ Q+ S +  NKRVL
Sbjct: 166 GILPADYWDFIPKDAQQDESCMKPNKRVL 194


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 1687

 Score =  134 bits (336), Expect = 2e-29
 Identities = 70/146 (47%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
 Frame = -1

Query: 424 CTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMR-HIKIKDVHS- 251
           CT+ G+K  + CEGHFG I FPFTIL+PYFM+E+A+IL KICP CKS+R  I++K   S 
Sbjct: 208 CTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILQKICPACKSIRQEIRVKRAKSL 267

Query: 250 -PSSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSD--GVLAS 80
              ++Q + C+YC G     YP MKF+VSS D F ++AII EV + S++K  +    L +
Sbjct: 268 LGYNNQPKGCKYCCGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDISLNKKRNLGRGLPA 327

Query: 79  DYWDVLPKDSAQENSSLPANKRVLLP 2
           DYWD +  D  QE + +  N++VL P
Sbjct: 328 DYWDFILGDVQQEENHV--NRKVLSP 351


>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
           [Cicer arietinum]
          Length = 1474

 Score =  133 bits (335), Expect = 2e-29
 Identities = 72/145 (49%), Positives = 97/145 (66%), Gaps = 4/145 (2%)
 Frame = -1

Query: 424 CTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSM-RHIKIKDVHS- 251
           CT+ G+K  + CEGHFG I FPFTIL+PYFM+E+A+ILNKICP CKS+ R ++IK V S 
Sbjct: 58  CTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIKRVKSL 117

Query: 250 PSSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSD--GVLASD 77
              +Q + C+YC G     YP MKF+VSS D F ++AII EV + ++ K  +    L +D
Sbjct: 118 LGFNQPKGCKYC-GNGMGRYPTMKFRVSSNDFFRRTAIIVEVNDVALKKKRNLGRGLPAD 176

Query: 76  YWDVLPKDSAQENSSLPANKRVLLP 2
           YWD +  D+ QE +   AN+ VL P
Sbjct: 177 YWDFILGDAQQEENH--ANRMVLSP 199


>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
           [Cicer arietinum] gi|502160026|ref|XP_004511608.1|
           PREDICTED: DNA-directed RNA polymerase D subunit 1-like
           isoform X2 [Cicer arietinum]
           gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
           RNA polymerase D subunit 1-like isoform X3 [Cicer
           arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
           DNA-directed RNA polymerase D subunit 1-like isoform X4
           [Cicer arietinum]
          Length = 1475

 Score =  133 bits (335), Expect = 2e-29
 Identities = 72/145 (49%), Positives = 97/145 (66%), Gaps = 4/145 (2%)
 Frame = -1

Query: 424 CTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSM-RHIKIKDVHS- 251
           CT+ G+K  + CEGHFG I FPFTIL+PYFM+E+A+ILNKICP CKS+ R ++IK V S 
Sbjct: 58  CTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIKRVKSL 117

Query: 250 PSSHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSD--GVLASD 77
              +Q + C+YC G     YP MKF+VSS D F ++AII EV + ++ K  +    L +D
Sbjct: 118 LGFNQPKGCKYC-GNGMGRYPTMKFRVSSNDFFRRTAIIVEVNDVALKKKRNLGRGLPAD 176

Query: 76  YWDVLPKDSAQENSSLPANKRVLLP 2
           YWD +  D+ QE +   AN+ VL P
Sbjct: 177 YWDFILGDAQQEENH--ANRMVLSP 199


>ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata]
           gi|297332282|gb|EFH62700.1| NRPD1a [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1456

 Score =  129 bits (325), Expect = 3e-28
 Identities = 67/142 (47%), Positives = 90/142 (63%), Gaps = 3/142 (2%)
 Frame = -1

Query: 424 CTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSPS 245
           C + G+K  + CEGHFGVINF ++I+NPYF+ E+A +LNKICPGCK +R    K     +
Sbjct: 56  CKTCGSKDRKVCEGHFGVINFQYSIINPYFLKEIAALLNKICPGCKYIR----KKQFQIT 111

Query: 244 SHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSD-GVLA--SDY 74
             Q   CRYC      GYP MKF+V++K+VF +S I+ EV E S+ K    GVLA   DY
Sbjct: 112 EDQPERCRYCTS--NTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLALPPDY 169

Query: 73  WDVLPKDSAQENSSLPANKRVL 8
           W  +P+DS  + S L   +R+L
Sbjct: 170 WSFVPQDSNIDESCLKPTRRIL 191


>ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabidopsis thaliana]
           gi|334183598|ref|NP_001185298.1| DNA-directed RNA
           polymerase IV subunit 1 [Arabidopsis thaliana]
           gi|75335311|sp|Q9LQ02.1|NRPD1_ARATH RecName:
           Full=DNA-directed RNA polymerase IV subunit 1; AltName:
           Full=DNA-directed RNA polymerase D subunit 1;
           Short=AtNRPD1a; Short=Nuclear RNA polymerase D 1a;
           AltName: Full=Protein RNA-DIRECTED DNA METHYLATION
           DEFECTIVE 3; AltName: Full=Protein SILENCING DEFECTIVE
           4; AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 2;
           AltName: Full=RNA polymerase IV subunit 1a; Short=POL IV
           1a gi|8493592|gb|AAF75815.1|AC011000_18 Contains
           similarity to DNA-directed RNA Polymerase alpha-subunit
           from Methanococcus jannaschii gi|3915860 and contains
           Ribosomal protein L36 PF|00444 and RNA-Polymerase
           alpha-subunit PF|00623 domains. EST gb|AA597311 comes
           from this gene [Arabidopsis thaliana]
           gi|12323252|gb|AAG51604.1|AC010795_8 RNA polymerase IIA
           largest subunit, putative; 12353-6556 [Arabidopsis
           thaliana] gi|59939208|gb|AAX12372.1| DNA-directed RNA
           polymerase beta subunit [Arabidopsis thaliana]
           gi|68300852|gb|AAY89363.1| RNA polymerase IV largest
           subunit [Arabidopsis thaliana]
           gi|332195920|gb|AEE34041.1| nuclear RNA polymerase D1A
           [Arabidopsis thaliana] gi|332195921|gb|AEE34042.1|
           nuclear RNA polymerase D1A [Arabidopsis thaliana]
          Length = 1453

 Score =  127 bits (320), Expect = 1e-27
 Identities = 67/142 (47%), Positives = 89/142 (62%), Gaps = 3/142 (2%)
 Frame = -1

Query: 424 CTSYGAKYPRDCEGHFGVINFPFTILNPYFMSEVAQILNKICPGCKSMRHIKIKDVHSPS 245
           C + G+K  + CEGHFGVINF ++I+NPYF+ EVA +LNKICPGCK +R    K     +
Sbjct: 56  CRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIR----KKQFQIT 111

Query: 244 SHQSRSCRYCNGKPKDGYPKMKFKVSSKDVFAKSAIIAEVGETSVSKCSD-GVLA--SDY 74
             Q   CRYC      GYP MKF+V++K+VF +S I+ EV E S+ K    GVL    DY
Sbjct: 112 EDQPERCRYCT--LNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLTLPPDY 169

Query: 73  WDVLPKDSAQENSSLPANKRVL 8
           W  LP+DS  + S L   +R++
Sbjct: 170 WSFLPQDSNIDESCLKPTRRII 191