BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00020313
         (428 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007029767.1| Sigma factor A isoform 2 [Theobroma cacao] g...   196   4e-48
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   196   4e-48
gb|EYU44877.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus...   195   6e-48
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun...   194   1e-47
ref|XP_004499502.1| PREDICTED: RNA polymerase sigma factor sigA-...   193   2e-47
ref|XP_004499501.1| PREDICTED: RNA polymerase sigma factor sigA-...   193   2e-47
ref|XP_004499499.1| PREDICTED: RNA polymerase sigma factor sigA-...   193   2e-47
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   191   9e-47
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   191   1e-46
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              191   1e-46
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   190   2e-46
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   190   2e-46
gb|EYU44876.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus...   189   3e-46
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   188   6e-46
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr...   187   1e-45
ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [A...   187   1e-45
ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Popu...   187   2e-45
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   187   2e-45
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      186   2e-45
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha...   186   2e-45

>ref|XP_007029767.1| Sigma factor A isoform 2 [Theobroma cacao]
           gi|508718372|gb|EOY10269.1| Sigma factor A isoform 2
           [Theobroma cacao]
          Length = 450

 Score =  196 bits (497), Expect = 4e-48
 Identities = 102/141 (72%), Positives = 107/141 (75%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIKAGL+LEE R RLK+RLGCEPSDE                 IECSLAREKLAMSN+RL
Sbjct: 217 KIKAGLSLEEHRLRLKERLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRL 276

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDNMGAEM D             EKFDSSKG+KISTYVYWWIRQGVSRALVE+
Sbjct: 277 VMSIAQRYDNMGAEMSDLIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVEN 336

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLHERL LIRNAK
Sbjct: 337 SRTLRLPTHLHERLGLIRNAK 357


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
           gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
           [Theobroma cacao]
          Length = 508

 Score =  196 bits (497), Expect = 4e-48
 Identities = 102/141 (72%), Positives = 107/141 (75%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIKAGL+LEE R RLK+RLGCEPSDE                 IECSLAREKLAMSN+RL
Sbjct: 217 KIKAGLSLEEHRLRLKERLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRL 276

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDNMGAEM D             EKFDSSKG+KISTYVYWWIRQGVSRALVE+
Sbjct: 277 VMSIAQRYDNMGAEMSDLIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVEN 336

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLHERL LIRNAK
Sbjct: 337 SRTLRLPTHLHERLGLIRNAK 357


>gb|EYU44877.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus guttatus]
           gi|604346415|gb|EYU44878.1| hypothetical protein
           MIMGU_mgv1a004509mg [Mimulus guttatus]
          Length = 520

 Score =  195 bits (495), Expect = 6e-48
 Identities = 102/140 (72%), Positives = 108/140 (77%)
 Frame = +1

Query: 7   IKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLV 186
           IKAGL LE+RRSRLK+RLGCEPSDE                 IECSLAREKLAMSNIRLV
Sbjct: 230 IKAGLLLEDRRSRLKERLGCEPSDEQLATSLQISRADLQSKLIECSLAREKLAMSNIRLV 289

Query: 187 MSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVESS 366
           MSIAQRYD+MGAEM D             EK+DSSKGFKISTYVYWWIRQGVS+ALVE+S
Sbjct: 290 MSIAQRYDHMGAEMADLIQGGLIGLLRGIEKYDSSKGFKISTYVYWWIRQGVSKALVENS 349

Query: 367 RTLRLPTHLHERLSLIRNAK 426
           RTLRLPTHLHERLSLIRNAK
Sbjct: 350 RTLRLPTHLHERLSLIRNAK 369


>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
           gi|462415485|gb|EMJ20222.1| hypothetical protein
           PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  194 bits (492), Expect = 1e-47
 Identities = 100/141 (70%), Positives = 106/141 (75%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIK GL++EE +SRLK+RLGCEPSDE                 IEC LAREKLAMSN+RL
Sbjct: 221 KIKVGLSVEEHKSRLKERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRL 280

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDNMGAEM D             EKFDSSKGFKISTYVYWWIRQGVSRALVE+
Sbjct: 281 VMSIAQRYDNMGAEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 340

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLHERL LIRNAK
Sbjct: 341 SRTLRLPTHLHERLGLIRNAK 361


>ref|XP_004499502.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Cicer
           arietinum] gi|502126947|ref|XP_004499503.1| PREDICTED:
           RNA polymerase sigma factor sigA-like isoform X2 [Cicer
           arietinum]
          Length = 513

 Score =  193 bits (490), Expect = 2e-47
 Identities = 99/141 (70%), Positives = 108/141 (76%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIKAGL+L+E +SRLK+RLGCEPSD+                 IECSLAREKL MSN+RL
Sbjct: 222 KIKAGLSLDEHKSRLKERLGCEPSDDQVATSLKISRAELRAKIIECSLAREKLTMSNVRL 281

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDNMGAEM D             EKFDSSKGFKISTYVYWWIRQGVSRALVE+
Sbjct: 282 VMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 341

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLH+RLSLIRNA+
Sbjct: 342 SRTLRLPTHLHDRLSLIRNAE 362


>ref|XP_004499501.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X3 [Cicer
           arietinum]
          Length = 513

 Score =  193 bits (490), Expect = 2e-47
 Identities = 99/141 (70%), Positives = 108/141 (76%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIKAGL+L+E +SRLK+RLGCEPSD+                 IECSLAREKL MSN+RL
Sbjct: 222 KIKAGLSLDEHKSRLKERLGCEPSDDQVATSLKISQAELRAKIIECSLAREKLTMSNVRL 281

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDNMGAEM D             EKFDSSKGFKISTYVYWWIRQGVS+ALVE+
Sbjct: 282 VMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVEN 341

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLHERLSLIRNA+
Sbjct: 342 SRTLRLPTHLHERLSLIRNAE 362


>ref|XP_004499499.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Cicer
           arietinum] gi|502126940|ref|XP_004499500.1| PREDICTED:
           RNA polymerase sigma factor sigA-like isoform X2 [Cicer
           arietinum]
          Length = 514

 Score =  193 bits (490), Expect = 2e-47
 Identities = 99/141 (70%), Positives = 108/141 (76%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIKAGL+L+E +SRLK+RLGCEPSD+                 IECSLAREKL MSN+RL
Sbjct: 223 KIKAGLSLDEHKSRLKERLGCEPSDDQVATSLKISQAELRAKIIECSLAREKLTMSNVRL 282

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDNMGAEM D             EKFDSSKGFKISTYVYWWIRQGVS+ALVE+
Sbjct: 283 VMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALVEN 342

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLHERLSLIRNA+
Sbjct: 343 SRTLRLPTHLHERLSLIRNAE 363


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  191 bits (485), Expect = 9e-47
 Identities = 98/141 (69%), Positives = 107/141 (75%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIK GL+LEE +SRLK++LGCEPSD+                 IECSLAREKLAMSN+RL
Sbjct: 212 KIKVGLSLEEHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRL 271

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQ+YDN+GAEM D             EKFDSSKGFKISTYVYWWIRQGVSRALVE+
Sbjct: 272 VMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 331

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLP HLHERLSLIRNAK
Sbjct: 332 SRTLRLPAHLHERLSLIRNAK 352


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
           vinifera]
          Length = 497

 Score =  191 bits (484), Expect = 1e-46
 Identities = 99/142 (69%), Positives = 108/142 (76%)
 Frame = +1

Query: 1   HKIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIR 180
           +KIKAGL LE+ +SRLK+R+G EP+DE                 IECSLAREKLAMSN+R
Sbjct: 205 NKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVR 264

Query: 181 LVMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVE 360
           LVMSIAQRYDNMGAEM D             EKFDSSKGFKISTYVYWWIRQGVSRALVE
Sbjct: 265 LVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVE 324

Query: 361 SSRTLRLPTHLHERLSLIRNAK 426
           +SRTLRLP+HLHERLSLIRNAK
Sbjct: 325 NSRTLRLPSHLHERLSLIRNAK 346


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  191 bits (484), Expect = 1e-46
 Identities = 99/142 (69%), Positives = 108/142 (76%)
 Frame = +1

Query: 1   HKIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIR 180
           +KIKAGL LE+ +SRLK+R+G EP+DE                 IECSLAREKLAMSN+R
Sbjct: 263 NKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVR 322

Query: 181 LVMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVE 360
           LVMSIAQRYDNMGAEM D             EKFDSSKGFKISTYVYWWIRQGVSRALVE
Sbjct: 323 LVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVE 382

Query: 361 SSRTLRLPTHLHERLSLIRNAK 426
           +SRTLRLP+HLHERLSLIRNAK
Sbjct: 383 NSRTLRLPSHLHERLSLIRNAK 404


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
           gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  190 bits (483), Expect = 2e-46
 Identities = 99/141 (70%), Positives = 106/141 (75%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIK GL LEER++RLKQRLGCEPS++                 +E SLAREKLAMSN+RL
Sbjct: 217 KIKVGLTLEERKTRLKQRLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRL 276

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDNMGAEM D             EKFDSSKGFKISTYVYWWIRQGVSRALVE+
Sbjct: 277 VMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 336

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLHERL LIRNAK
Sbjct: 337 SRTLRLPTHLHERLGLIRNAK 357


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1
           [Glycine max] gi|571478813|ref|XP_006587676.1|
           PREDICTED: RNA polymerase sigma factor sigA-like isoform
           X2 [Glycine max]
          Length = 503

 Score =  190 bits (482), Expect = 2e-46
 Identities = 97/141 (68%), Positives = 107/141 (75%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           +IK GL+LEE +SRLK+RLGCEPSD+                 IEC+LAREKLAMSN+RL
Sbjct: 212 RIKVGLSLEEHKSRLKERLGCEPSDDQMAISLKISRTELRARMIECTLAREKLAMSNVRL 271

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQ+YDN+GAEM D             EKFDSSKGFKISTYVYWWIRQGVSRALVE+
Sbjct: 272 VMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 331

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLP HLHERLSLIRNAK
Sbjct: 332 SRTLRLPAHLHERLSLIRNAK 352


>gb|EYU44876.1| hypothetical protein MIMGU_mgv1a004509mg [Mimulus guttatus]
          Length = 523

 Score =  189 bits (481), Expect = 3e-46
 Identities = 102/143 (71%), Positives = 108/143 (75%), Gaps = 3/143 (2%)
 Frame = +1

Query: 7   IKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLV 186
           IKAGL LE+RRSRLK+RLGCEPSDE                 IECSLAREKLAMSNIRLV
Sbjct: 230 IKAGLLLEDRRSRLKERLGCEPSDEQLATSLQISRADLQSKLIECSLAREKLAMSNIRLV 289

Query: 187 MSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIR---QGVSRALV 357
           MSIAQRYD+MGAEM D             EK+DSSKGFKISTYVYWWIR   QGVS+ALV
Sbjct: 290 MSIAQRYDHMGAEMADLIQGGLIGLLRGIEKYDSSKGFKISTYVYWWIRQHCQGVSKALV 349

Query: 358 ESSRTLRLPTHLHERLSLIRNAK 426
           E+SRTLRLPTHLHERLSLIRNAK
Sbjct: 350 ENSRTLRLPTHLHERLSLIRNAK 372


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score =  188 bits (478), Expect = 6e-46
 Identities = 97/140 (69%), Positives = 105/140 (75%)
 Frame = +1

Query: 7   IKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLV 186
           IKAGL+LE+ +SRLK+RLGC+PSDE                 I CSLAREKLAMSN+RLV
Sbjct: 218 IKAGLSLEDHKSRLKERLGCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLV 277

Query: 187 MSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVESS 366
           MSIAQRYDNMGAEM D             EKFDSSKGF+ISTYVYWWIRQGVSRALVE+S
Sbjct: 278 MSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENS 337

Query: 367 RTLRLPTHLHERLSLIRNAK 426
           RTLRLP HLHERL LIRNAK
Sbjct: 338 RTLRLPNHLHERLGLIRNAK 357


>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
           gi|557097090|gb|ESQ37598.1| hypothetical protein
           EUTSA_v10002486mg [Eutrema salsugineum]
          Length = 519

 Score =  187 bits (476), Expect = 1e-45
 Identities = 96/141 (68%), Positives = 105/141 (74%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIK+GL L++ +SRLK RLGCEPSDE                 +EC LAREKLAMSN+RL
Sbjct: 228 KIKSGLRLDDHKSRLKDRLGCEPSDEQLAISLKISRGELQAWLMECHLAREKLAMSNVRL 287

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDNMGAEM D             EKFDSSKGF+ISTYVYWWIRQGVSRALV++
Sbjct: 288 VMSIAQRYDNMGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 347

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLHERL LIRNAK
Sbjct: 348 SRTLRLPTHLHERLGLIRNAK 368


>ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [Amborella trichopoda]
           gi|548832002|gb|ERM94804.1| hypothetical protein
           AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  187 bits (475), Expect = 1e-45
 Identities = 97/141 (68%), Positives = 107/141 (75%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KI+AGL+LEE +SRLK++LG +PSDE                 IECSLA+EKLAMSNIRL
Sbjct: 206 KIRAGLSLEEHKSRLKEKLGFDPSDELLASSLKISRSELHSKLIECSLAKEKLAMSNIRL 265

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQ+YDNMG EM D             EKFDSSKGFKISTYVYWWIRQGVSRA+VE+
Sbjct: 266 VMSIAQKYDNMGIEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAMVEN 325

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLHERLSLIRNAK
Sbjct: 326 SRTLRLPTHLHERLSLIRNAK 346


>ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Populus trichocarpa]
           gi|550316904|gb|ERP49007.1| hypothetical protein
           POPTR_0019s06020g [Populus trichocarpa]
          Length = 451

 Score =  187 bits (474), Expect = 2e-45
 Identities = 95/140 (67%), Positives = 105/140 (75%)
 Frame = +1

Query: 7   IKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLV 186
           I+AGL+ E+ +SRLK+RLGCEPSDE                 I+CSLAREKLAMSN+RLV
Sbjct: 219 IRAGLSFEDHKSRLKERLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLV 278

Query: 187 MSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVESS 366
           MSIAQ+YDNMGAEM D             EKFDSSKGFKISTYVYWWIRQGVSRALV++S
Sbjct: 279 MSIAQKYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNS 338

Query: 367 RTLRLPTHLHERLSLIRNAK 426
           RTLRLP HLHERL LIRNAK
Sbjct: 339 RTLRLPNHLHERLGLIRNAK 358


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
           gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
           1 family protein [Populus trichocarpa]
          Length = 509

 Score =  187 bits (474), Expect = 2e-45
 Identities = 95/140 (67%), Positives = 105/140 (75%)
 Frame = +1

Query: 7   IKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRLV 186
           I+AGL+ E+ +SRLK+RLGCEPSDE                 I+CSLAREKLAMSN+RLV
Sbjct: 219 IRAGLSFEDHKSRLKERLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLV 278

Query: 187 MSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVESS 366
           MSIAQ+YDNMGAEM D             EKFDSSKGFKISTYVYWWIRQGVSRALV++S
Sbjct: 279 MSIAQKYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNS 338

Query: 367 RTLRLPTHLHERLSLIRNAK 426
           RTLRLP HLHERL LIRNAK
Sbjct: 339 RTLRLPNHLHERLGLIRNAK 358


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  186 bits (473), Expect = 2e-45
 Identities = 96/141 (68%), Positives = 107/141 (75%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KI+ GL LEE++SRLK+RLGCEPSD+                 IECSLARE+LAMSN+RL
Sbjct: 217 KIQVGLYLEEQKSRLKERLGCEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRL 276

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDN+GAEM D             EKFD SKG+KISTYVYWWIRQGVSRALVE+
Sbjct: 277 VMSIAQRYDNVGAEMADLVQGGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVEN 336

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPT+LHERLSLIRNAK
Sbjct: 337 SRTLRLPTYLHERLSLIRNAK 357


>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
           gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
           polymerase sigma factor sigA; Short=Sigma factor A;
           Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
           sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
           Full=RNA polymerase sigma factor sig2; Short=Atsig2;
           Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
           factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
           Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
           polymerase sigma subunit 1 [Arabidopsis thaliana]
           gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
           thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
           thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
           polymerase sigma factor [Arabidopsis thaliana]
           gi|5478439|dbj|BAA82448.1| sigma factor SigA
           [Arabidopsis thaliana] gi|17064900|gb|AAL32604.1| RNA
           polymerase sigma subunit 1 [Arabidopsis thaliana]
           gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit
           1 [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
           AT1G64860 [Arabidopsis thaliana]
           gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
           1 [Arabidopsis thaliana]
          Length = 502

 Score =  186 bits (473), Expect = 2e-45
 Identities = 95/141 (67%), Positives = 105/141 (74%)
 Frame = +1

Query: 4   KIKAGLALEERRSRLKQRLGCEPSDEXXXXXXXXXXXXXXXXXIECSLAREKLAMSNIRL 183
           KIK+GL L++ +SRLK RLGCEPSDE                 +EC LAREKLAMSN+RL
Sbjct: 211 KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 270

Query: 184 VMSIAQRYDNMGAEMPDXXXXXXXXXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVES 363
           VMSIAQRYDN+GAEM D             EKFDSSKGF+ISTYVYWWIRQGVSRALV++
Sbjct: 271 VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 330

Query: 364 SRTLRLPTHLHERLSLIRNAK 426
           SRTLRLPTHLHERL LIRNAK
Sbjct: 331 SRTLRLPTHLHERLGLIRNAK 351