BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00015350
         (743 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF67921.1| Ji1 putative pol protein [Zea mays]                    126   9e-27
gb|AAX95605.1| hypothetical protein [Oryza sativa Japonica Group...   125   1e-26
gb|AAK53850.1|AC016781_4 Putative retroelement [Oryza sativa Jap...   125   1e-26
emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa Japonica Group]        125   2e-26
emb|CAI44604.1| P0650D04.8 [Oryza sativa Japonica Group]              125   2e-26
gb|AEJ07943.1| Ji4 putative pol protein [Zea diploperennis]           124   3e-26
gb|ABA98030.2| retrotransposon protein, putative, Ty1-copia subc...   124   3e-26
gb|AAD20307.1| copia-type pol polyprotein [Zea mays]                  124   5e-26
gb|AAL25185.1|AC079852_18 Putative polyprotein [Oryza sativa] gi...   124   5e-26
gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group]     123   6e-26
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa Japonica Group]         123   6e-26
emb|CAH66560.1| OSIGBa0113K06.6 [Oryza sativa Indica Group]           123   6e-26
gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subc...   123   6e-26
gb|AAN40035.1| putative gag-pol polyprotein [Zea mays]                123   6e-26
gb|ABF94881.1| retrotransposon protein, putative, Ty1-copia subc...   123   8e-26
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]                122   1e-25
gb|AAO66559.1| putative copia-type pol polyprotein [Oryza sativa...   122   2e-25
gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea mays]     122   2e-25
gb|AAK00427.2| Putative copia-type pol polyprotein [Oryza sativa...   122   2e-25
emb|CAE76041.1| B1292H11.27 [Oryza sativa Japonica Group] gi|385...   121   3e-25

>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
          Length = 1063

 Score =  126 bits (316), Expect = 9e-27
 Identities = 59/141 (41%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
 Frame = -2

Query: 727 FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTN-EQETCLVTKTSNELSWLWHKRLSHLN 551
           FT     V  + ++ I F  +L+G LY+V++   E +TCLV KT+  L WLWH+RL+H+ 
Sbjct: 73  FTDTGVTVFRRSDDSIAFKGVLEGQLYLVDFERAELDTCLVAKTN--LGWLWHRRLAHVG 130

Query: 550 FKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLDLF 371
            K++ KL + +  LG+ +  F++D +C  CQ GKQ     P   +  T + LELLH+DLF
Sbjct: 131 MKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGTHHPHKNIMTTDRPLELLHMDLF 190

Query: 370 GPVTHLSINGRKYTLVVIDDF 308
           GP+ ++SI G KY LV++DD+
Sbjct: 191 GPIAYISIGGSKYCLVIVDDY 211


>gb|AAX95605.1| hypothetical protein [Oryza sativa Japonica Group]
           gi|108709338|gb|ABF97133.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 466

 Score =  125 bits (315), Expect = 1e-26
 Identities = 59/143 (41%), Positives = 94/143 (65%), Gaps = 3/143 (2%)
 Frame = -2

Query: 727 FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTN---EQETCLVTKTSNELSWLWHKRLSH 557
           FT     V  +++  ++F  +L+G LY+V++++   + ETCLV K+  ++ WLWH+RL+H
Sbjct: 290 FTDVDVTVFRRDDSSVVFKGVLKGMLYLVDFSSTKAKHETCLVAKS--DMGWLWHRRLAH 347

Query: 556 LNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLD 377
           +  +++ KL ++   LG+ + +F++D VC  CQ  KQ     P   V  TT+ LELLH+D
Sbjct: 348 VGMRNLHKLLKHDHILGLTNVLFEKDRVCSVCQARKQIGAHRPVKNVMTTTRPLELLHMD 407

Query: 376 LFGPVTHLSINGRKYTLVVIDDF 308
           LFGP+ +LSI G KY LV++DDF
Sbjct: 408 LFGPIAYLSIGGNKYGLVIVDDF 430


>gb|AAK53850.1|AC016781_4 Putative retroelement [Oryza sativa Japonica Group]
          Length = 916

 Score =  125 bits (315), Expect = 1e-26
 Identities = 59/143 (41%), Positives = 94/143 (65%), Gaps = 3/143 (2%)
 Frame = -2

Query: 727 FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTN---EQETCLVTKTSNELSWLWHKRLSH 557
           FT     V  +++  ++F  +L+G LY+V++++   + ETCLV K+  ++ WLWH+RL+H
Sbjct: 302 FTDVDVTVFRRDDSSVVFKGVLKGMLYLVDFSSTKAKHETCLVAKS--DMGWLWHRRLAH 359

Query: 556 LNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLD 377
           +  +++ KL ++   LG+ + +F++D VC  CQ  KQ     P   V  TT+ LELLH+D
Sbjct: 360 VGMRNLHKLLKHDHILGLTNVLFEKDRVCSVCQARKQIGAHRPVKNVMTTTRPLELLHMD 419

Query: 376 LFGPVTHLSINGRKYTLVVIDDF 308
           LFGP+ +LSI G KY LV++DDF
Sbjct: 420 LFGPIAYLSIGGNKYGLVIVDDF 442


>emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa Japonica Group]
          Length = 1549

 Score =  125 bits (314), Expect = 2e-26
 Identities = 60/143 (41%), Positives = 93/143 (65%), Gaps = 3/143 (2%)
 Frame = -2

Query: 727  FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTN---EQETCLVTKTSNELSWLWHKRLSH 557
            FT     V  +++  ++F  +L+G LY+V++++   + ETCLV K++    WLWH+RL+H
Sbjct: 780  FTDVDVTVFRRDDSLVVFKGVLKGKLYLVDFSSTKAKHETCLVAKSNT--GWLWHRRLAH 837

Query: 556  LNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLD 377
            +  +++ KL ++   LG+ +  F++D VC  CQ GKQ     P   V  TT+ LELLH+D
Sbjct: 838  VGMRNLHKLLKHDHILGLTNVQFEKDRVCSACQAGKQIGAHHPVKNVMTTTRPLELLHMD 897

Query: 376  LFGPVTHLSINGRKYTLVVIDDF 308
            LFGP+ +LSI G KY LV++DDF
Sbjct: 898  LFGPIAYLSIGGNKYGLVIVDDF 920


>emb|CAI44604.1| P0650D04.8 [Oryza sativa Japonica Group]
          Length = 402

 Score =  125 bits (313), Expect = 2e-26
 Identities = 62/149 (41%), Positives = 94/149 (63%), Gaps = 3/149 (2%)
 Frame = -2

Query: 727 FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWHKRLSH 557
           FT     V  +    ++F  +L+G LY+V++++ +   ETCLV K++ E  WLWH+RL+H
Sbjct: 189 FTDVDVTVYRRNNSSVVFKGVLKGKLYLVDFSSSKAKHETCLVAKSNTE--WLWHRRLAH 246

Query: 556 LNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLD 377
           +  +++ KL ++   L + +  F++D VC  CQ GKQ     P   V  TT+ LELLH+D
Sbjct: 247 VGKRNLHKLLKHDHILRLTNVQFEKDRVCSTCQAGKQIGAHHPVKNVMTTTRPLELLHMD 306

Query: 376 LFGPVTHLSINGRKYTLVVIDDFLVVTAV 290
           LFGP+ +LSI G KY+LV++DDF   T V
Sbjct: 307 LFGPIAYLSIGGNKYSLVIVDDFSRFTLV 335


>gb|AEJ07943.1| Ji4 putative pol protein [Zea diploperennis]
          Length = 1063

 Score =  124 bits (311), Expect = 3e-26
 Identities = 58/141 (41%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
 Frame = -2

Query: 727 FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTN-EQETCLVTKTSNELSWLWHKRLSHLN 551
           FT     V  + ++ I F  +L+G LY+V++   E +TCL+ KT+  + WLWH+RL+H+ 
Sbjct: 73  FTDVGVTVFRRSDDSIAFKGVLEGQLYLVDFDRAELDTCLIAKTN--MGWLWHRRLAHVG 130

Query: 550 FKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLDLF 371
            K++ KL + +  LG+ +  F++D +C  CQ GKQ     P   V  T + LELLH+DLF
Sbjct: 131 MKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGTHHPHKNVMTTDRPLELLHMDLF 190

Query: 370 GPVTHLSINGRKYTLVVIDDF 308
           GP+ ++SI G KY LV++DD+
Sbjct: 191 GPIAYISIGGSKYCLVIVDDY 211


>gb|ABA98030.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1310

 Score =  124 bits (311), Expect = 3e-26
 Identities = 58/136 (42%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
 Frame = -2

Query: 706  VKNQEEEEILFTKILQGNLYIVEWTN---EQETCLVTKTSNELSWLWHKRLSHLNFKSIT 536
            V  +++  ++F  +L+G LY+V++ +   + ETCLV K++  + WLWH+RL+H+  +++ 
Sbjct: 680  VAKRDDSSVVFKGVLEGKLYLVDFFSTKAKHETCLVAKSN--MRWLWHRRLTHVGMRNLH 737

Query: 535  KLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLDLFGPVTH 356
            KL ++   LG+ +  F++D VC  CQ GKQ     P   V  TT+ LELLH+DLFGP+ +
Sbjct: 738  KLLKHDHILGLTNVQFEKDRVCSACQAGKQIGAHHPVKNVMITTRPLELLHMDLFGPIAY 797

Query: 355  LSINGRKYTLVVIDDF 308
            LSI G KY LV++DDF
Sbjct: 798  LSIGGDKYGLVIVDDF 813


>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
          Length = 1063

 Score =  124 bits (310), Expect = 5e-26
 Identities = 57/141 (40%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
 Frame = -2

Query: 727 FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTN-EQETCLVTKTSNELSWLWHKRLSHLN 551
           FT     V  + ++ I F  +L+G LY+V++   E +TCL+ KT+  + WLWH+RL+H+ 
Sbjct: 73  FTDIGVTVFRRSDDSIAFKGVLEGQLYLVDFDRAELDTCLIAKTN--MGWLWHRRLAHVG 130

Query: 550 FKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLDLF 371
            K++ KL + +  LG+ +  F++D +C  CQ GKQ     P   +  T + LELLH+DLF
Sbjct: 131 MKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGTHHPHKNIMTTDRPLELLHMDLF 190

Query: 370 GPVTHLSINGRKYTLVVIDDF 308
           GP+ ++SI G KY LV++DD+
Sbjct: 191 GPIAYISIGGSKYCLVIVDDY 211


>gb|AAL25185.1|AC079852_18 Putative polyprotein [Oryza sativa] gi|31430131|gb|AAP52089.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1407

 Score =  124 bits (310), Expect = 5e-26
 Identities = 59/143 (41%), Positives = 93/143 (65%), Gaps = 3/143 (2%)
 Frame = -2

Query: 727  FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTN---EQETCLVTKTSNELSWLWHKRLSH 557
            FT     V  +++  I+F  +L+G LY+V++++   + ETCLV K+  ++ WLWH+RL+H
Sbjct: 782  FTDVDVTVFRRDDSSIVFKGVLKGKLYLVDFSSTKAKHETCLVAKS--DMGWLWHRRLAH 839

Query: 556  LNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLD 377
            +  +++ KL ++   LG+ + +F++D VC  CQ  KQ     P   V  TT+ LE LH+D
Sbjct: 840  VGMRNLHKLLKHDHILGLTNVLFEKDMVCSACQARKQIGAHHPVKNVMTTTRPLEFLHMD 899

Query: 376  LFGPVTHLSINGRKYTLVVIDDF 308
            LFGP+ +LSI G KY LV++DDF
Sbjct: 900  LFGPIAYLSIGGNKYGLVIVDDF 922


>gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1584

 Score =  123 bits (309), Expect = 6e-26
 Identities = 56/148 (37%), Positives = 94/148 (63%), Gaps = 3/148 (2%)
 Frame = -2

Query: 742  GKRIEFTTNKCLVKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWH 572
            G    F   + +V +  ++  ++     GNLY+V++ + +   +TCLV KTS  L WLWH
Sbjct: 691  GLSCAFFPQEVIVSSLLDKSCVYKGFRYGNLYLVDFNSSEANLKTCLVAKTS--LGWLWH 748

Query: 571  KRLSHLNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILE 392
            +RL+H+    ++KL++  L +G+ D  F++D +C  CQ GKQ   S P  ++ +T+++LE
Sbjct: 749  RRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVACSHPTKSIMSTSRLLE 808

Query: 391  LLHLDLFGPVTHLSINGRKYTLVVIDDF 308
            LLH+DLFGP T+ SI G  + LV++D++
Sbjct: 809  LLHMDLFGPTTYKSIGGNSHCLVIVDEY 836


>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa Japonica Group]
          Length = 1539

 Score =  123 bits (309), Expect = 6e-26
 Identities = 58/148 (39%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
 Frame = -2

Query: 742  GKRIEFTTNKCLVKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWH 572
            G    F   + +V +  ++  +F     GNLY V++ + +   +TCLV KTS  L WLWH
Sbjct: 601  GLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYFVDFNSSEANLKTCLVAKTS--LGWLWH 658

Query: 571  KRLSHLNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILE 392
            +RL+H+    ++KL++  L +G+ D  F++D +C  CQ GKQ   S P  ++ +T++ LE
Sbjct: 659  RRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVACSHPTKSIMSTSRPLE 718

Query: 391  LLHLDLFGPVTHLSINGRKYTLVVIDDF 308
            LLH+DLFGP T+ SI G  + LV++DD+
Sbjct: 719  LLHMDLFGPTTYKSIGGNSHCLVIVDDY 746


>emb|CAH66560.1| OSIGBa0113K06.6 [Oryza sativa Indica Group]
          Length = 1539

 Score =  123 bits (309), Expect = 6e-26
 Identities = 58/148 (39%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
 Frame = -2

Query: 742  GKRIEFTTNKCLVKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWH 572
            G    F   + +V +  ++  +F     GNLY V++ + +   +TCLV KTS  L WLWH
Sbjct: 601  GLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYFVDFNSSEANLKTCLVAKTS--LGWLWH 658

Query: 571  KRLSHLNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILE 392
            +RL+H+    ++KL++  L +G+ D  F++D +C  CQ GKQ   S P  ++ +T++ LE
Sbjct: 659  RRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVACSHPTKSIMSTSRPLE 718

Query: 391  LLHLDLFGPVTHLSINGRKYTLVVIDDF 308
            LLH+DLFGP T+ SI G  + LV++DD+
Sbjct: 719  LLHMDLFGPTTYKSIGGNSHCLVIVDDY 746


>gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2112

 Score =  123 bits (309), Expect = 6e-26
 Identities = 56/148 (37%), Positives = 94/148 (63%), Gaps = 3/148 (2%)
 Frame = -2

Query: 742  GKRIEFTTNKCLVKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWH 572
            G    F   + +V +  ++  ++     GNLY+V++ + +   +TCLV KTS  L WLWH
Sbjct: 691  GLSCAFFPQEVIVSSLLDKSCVYKGFRYGNLYLVDFNSSEANLKTCLVAKTS--LGWLWH 748

Query: 571  KRLSHLNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILE 392
            +RL+H+    ++KL++  L +G+ D  F++D +C  CQ GKQ   S P  ++ +T+++LE
Sbjct: 749  RRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVACSHPTKSIMSTSRLLE 808

Query: 391  LLHLDLFGPVTHLSINGRKYTLVVIDDF 308
            LLH+DLFGP T+ SI G  + LV++D++
Sbjct: 809  LLHMDLFGPTTYKSIGGNSHCLVIVDEY 836


>gb|AAN40035.1| putative gag-pol polyprotein [Zea mays]
          Length = 1706

 Score =  123 bits (309), Expect = 6e-26
 Identities = 57/141 (40%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
 Frame = -2

Query: 727  FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTN-EQETCLVTKTSNELSWLWHKRLSHLN 551
            FT     V  + ++ I F  +L+G LY+V++   E +TCL+ KT+  + WLWH+RL+H+ 
Sbjct: 925  FTDIGVTVFRRSDDSIAFKGVLEGQLYLVDFDRAELDTCLIAKTN--MGWLWHRRLAHVG 982

Query: 550  FKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLDLF 371
             K++ KL + +  LG+ +  F++D +C  CQ GKQ     P   +  T + LELLH+DLF
Sbjct: 983  MKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGSHHPHKNIMTTNRPLELLHMDLF 1042

Query: 370  GPVTHLSINGRKYTLVVIDDF 308
            GP+ ++SI G KY LV++DD+
Sbjct: 1043 GPIAYISIGGSKYCLVIVDDY 1063


>gb|ABF94881.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
           [Oryza sativa Japonica Group]
          Length = 702

 Score =  123 bits (308), Expect = 8e-26
 Identities = 59/143 (41%), Positives = 90/143 (62%), Gaps = 3/143 (2%)
 Frame = -2

Query: 727 FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWHKRLSH 557
           FT    +V  + +  ++F  +L+G LY+V++ + +   ETCLV K++    WLWH+RL+H
Sbjct: 514 FTDVDVIVYRRNDSSVVFKGVLKGKLYLVDFFSSKAKHETCLVAKSNT--GWLWHRRLAH 571

Query: 556 LNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLD 377
           +  + + KL ++   LG+ +  F++D VC  CQ  KQ     P   V  TT+ LELLH+D
Sbjct: 572 VGMRHLHKLLKHDHILGLTNVQFEKDRVCSACQASKQIGAHHPVKNVMTTTRPLELLHMD 631

Query: 376 LFGPVTHLSINGRKYTLVVIDDF 308
           LFGP+ +LSI G KY LV++DDF
Sbjct: 632 LFGPIAYLSIGGNKYGLVIVDDF 654


>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
          Length = 2319

 Score =  122 bits (307), Expect = 1e-25
 Identities = 59/136 (43%), Positives = 88/136 (64%), Gaps = 3/136 (2%)
 Frame = -2

Query: 706  VKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWHKRLSHLNFKSIT 536
            +  +E+  + FT  L+G LY+V++T  +   ETCLV K+     WLWH+RL+H+  +++ 
Sbjct: 823  ILRREDSSVAFTGRLKGKLYLVDFTTSKVTPETCLVAKSDK--GWLWHRRLAHVGMRNLA 880

Query: 535  KLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLDLFGPVTH 356
            KL ++   +G+ + VF++D VC  CQ GKQ  V      V  T + LELLH+DLFGPV +
Sbjct: 881  KLQKDNHIIGLTNVVFEKDRVCGACQAGKQHGVPHQSKNVVTTKRPLELLHMDLFGPVAY 940

Query: 355  LSINGRKYTLVVIDDF 308
            +SI G KY LV++DDF
Sbjct: 941  ISIGGSKYGLVIVDDF 956


>gb|AAO66559.1| putative copia-type pol polyprotein [Oryza sativa Japonica Group]
            gi|108709148|gb|ABF96943.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 2027

 Score =  122 bits (305), Expect = 2e-25
 Identities = 60/141 (42%), Positives = 91/141 (64%), Gaps = 3/141 (2%)
 Frame = -2

Query: 721  TNKCLVKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWHKRLSHLN 551
            TN   V  + +  I+F  +L+G LY+V++++ +   ET LV K++    WLWH+RL+H+ 
Sbjct: 771  TNVDAVYRRNDFSIVFKGVLKGKLYLVDFSSSKAKHETYLVPKSNT--GWLWHRRLAHVG 828

Query: 550  FKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLDLF 371
             +++ KL ++   LG+ +  F++D VC  CQ GKQ     P   V  TT+ LELLH+DLF
Sbjct: 829  MRNLHKLLKHDHILGLTNVQFEKDRVCSACQAGKQIGAHHPVKNVMTTTRALELLHMDLF 888

Query: 370  GPVTHLSINGRKYTLVVIDDF 308
            GP+ +LSI G KY LV++DDF
Sbjct: 889  GPIAYLSIGGNKYGLVIVDDF 909


>gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea mays]
          Length = 1694

 Score =  122 bits (305), Expect = 2e-25
 Identities = 56/141 (39%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
 Frame = -2

Query: 727  FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTN-EQETCLVTKTSNELSWLWHKRLSHLN 551
            FT     V  + ++ I F  +L+G LY+V++   E + CL+ KT+  + WLWH+RL+H+ 
Sbjct: 912  FTDVGVTVFRRSDDSIAFKGVLEGQLYLVDFDRAELDNCLIAKTN--MGWLWHRRLAHVG 969

Query: 550  FKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLDLF 371
             K++ KL + +  LG+ +  F++D +C  CQ GKQ     P   +  T + LELLH+DLF
Sbjct: 970  MKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGAHHPHKNIMTTDRPLELLHMDLF 1029

Query: 370  GPVTHLSINGRKYTLVVIDDF 308
            GP+ ++SI G KY LV++DD+
Sbjct: 1030 GPIAYISIGGSKYCLVIVDDY 1050


>gb|AAK00427.2| Putative copia-type pol polyprotein [Oryza sativa Japonica Group]
            gi|31429784|gb|AAP51786.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1377

 Score =  122 bits (305), Expect = 2e-25
 Identities = 57/148 (38%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
 Frame = -2

Query: 742  GKRIEFTTNKCLVKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWH 572
            G    F   + +V +  ++  +F     GNLY+V++ + +   +TCLV KTS  L WLWH
Sbjct: 572  GLSCAFLPQEVIVSSLLDKSCVFKGFRYGNLYLVDFNSSEANLKTCLVAKTS--LGWLWH 629

Query: 571  KRLSHLNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILE 392
            +RL+H+    ++KL++  L + + D  F++D +C  CQ GKQ   S P  ++ +T++ LE
Sbjct: 630  RRLAHVGMNQLSKLSKRDLVVDLKDVKFEKDKLCSACQAGKQVACSHPTQSIMSTSRPLE 689

Query: 391  LLHLDLFGPVTHLSINGRKYTLVVIDDF 308
            LLH+DLFGP T+ SI G  + LV++DD+
Sbjct: 690  LLHMDLFGPTTYKSIGGNSHCLVIVDDY 717


>emb|CAE76041.1| B1292H11.27 [Oryza sativa Japonica Group] gi|38569148|emb|CAE03661.3|
            OSJNBa0042N22.2 [Oryza sativa Japonica Group]
          Length = 1486

 Score =  121 bits (303), Expect = 3e-25
 Identities = 57/143 (39%), Positives = 90/143 (62%), Gaps = 3/143 (2%)
 Frame = -2

Query: 727  FTTNKCLVKNQEEEEILFTKILQGNLYIVEWTNEQ---ETCLVTKTSNELSWLWHKRLSH 557
            FT     V  +++  I F  +L+G+LY+V++  ++   E CL+ K+S  + WLWH RL+H
Sbjct: 666  FTDVDVTVFRRDDSSIAFKGVLKGDLYLVDFDVDRVNPEACLIAKSS--MGWLWHHRLAH 723

Query: 556  LNFKSITKLARNKLALGIPDQVFQRDHVCEFCQVGKQARVSLPPVAVQATTQILELLHLD 377
            +  +++  L + +  LG+ +  F++D VC  CQ GKQ   + P   +  TT+ LELLH+D
Sbjct: 724  VGMRNLASLLKGEYILGLSNVSFEKDRVCSACQAGKQVGSTHPIKNIMTTTRPLELLHMD 783

Query: 376  LFGPVTHLSINGRKYTLVVIDDF 308
            LFGPV ++SI G KY  V++DDF
Sbjct: 784  LFGPVAYISIGGNKYGFVIVDDF 806