BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00009799
         (790 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-...    37   7e-07

>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550176|gb|ABA92973.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 591

 Score = 37.0 bits (84), Expect(3) = 7e-07
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = -1

Query: 109 VSKHVLKMIGMIEKLASIGLKLPETLAVNSILYSLP 2
           VS HV+KMIG  E L  +G  L   LA + IL SLP
Sbjct: 155 VSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLP 190



 Score = 33.5 bits (75), Expect(3) = 7e-07
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -3

Query: 476 MLNFSKLTGSKFLDCLHNLCLVLRLEKIEYV 384
           +L   KLTG+ F+D  HNL +VLR E  E+V
Sbjct: 36  ILEKEKLTGTNFMDWYHNLRIVLRQEHKEFV 66



 Score = 28.9 bits (63), Expect(3) = 7e-07
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -2

Query: 279 IMHVSMTMKLQRQHDQILPCEMIEHLESLYSSQAQTLEFDLCCKEVIEINLLEG 118
           +M  +M++KLQRQ++ +    +I  L +++  QA+   F+   K +    L EG
Sbjct: 100 LMLATMSLKLQRQYEALDAHTIITGLRNMFEDQARAERFN-TSKSLFACRLAEG 152