BLASTX nr result
ID: Mentha26_contig00008457
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha26_contig00008457
(1381 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus... 306 2e-80
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 246 2e-62
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 233 1e-58
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 233 1e-58
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 233 1e-58
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 229 2e-57
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 229 2e-57
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps... 229 3e-57
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 225 3e-56
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 223 1e-55
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 221 5e-55
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 221 6e-55
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put... 219 2e-54
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 215 4e-53
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 215 4e-53
ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phas... 212 4e-52
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 211 8e-52
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 207 7e-51
ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|3555218... 206 2e-50
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 206 2e-50
>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
Length = 2113
Score = 306 bits (783), Expect = 2e-80
Identities = 193/471 (40%), Positives = 245/471 (52%), Gaps = 20/471 (4%)
Frame = +3
Query: 9 KAWGSSNKESGSNDAAGWGSKVADESTPSKAWGSSNKESGSNNWNSIKKNSTDSTPAQGW 188
KA NK + DAA + + +S W S+ K S W +K + T + W
Sbjct: 1687 KASQIQNKSTWGRDAAPTENVSSPKSQEDGLWSSAQKGEQST-WGHVKTSQTQNKST--W 1743
Query: 189 GSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQGWGSKNDTWETKV 368
G + +S W +++ + Q N+ W+TKV
Sbjct: 1744 GGDTAPIENVPSPKSQEDGLWS----------------SASAAQKEQDGSKDNNPWQTKV 1787
Query: 369 VDE--STDLKAWGSS----KKDSEL---------NNWSSSQKNSEDSKAAXXXXXXXXXX 503
++ S L WGSS K DS+ + WSSSQK DS +
Sbjct: 1788 AEQANSEPLSTWGSSSDWVKPDSQTPTGDNTKNESPWSSSQKLLNDSTDSQGW------- 1840
Query: 504 XXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXX----PSSDG 671
GS VDT++DND +PQW P++D
Sbjct: 1841 -----------GSSKVDTANDNDEQPQWGRGRGRGRGRGWGRGVGRGREGSQGRGPTNDR 1889
Query: 672 DWRNKRPR-PVDDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDG 848
DW+NKR PVDDPNAP +FTA+RQRLDSFTAEEQ++L E E++MKNIRR+MHQTGY DG
Sbjct: 1890 DWKNKRSGGPVDDPNAPGIFTASRQRLDSFTAEEQEVLLETETIMKNIRRVMHQTGYNDG 1949
Query: 849 DRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFS 1028
D L ADDQ YIVDNV N+HP+K++K GAGLD+I V +HSEFQ SRC YAV++DG ADFS
Sbjct: 1950 DPLSADDQKYIVDNVLNHHPEKSLKIGAGLDHIMVNKHSEFQMSRCLYAVTIDGSKADFS 2009
Query: 1029 YRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQGPPPPRGEAGTPRGWNXXXXX 1208
YRKCL+NF++ KYP+ AESFI KYFKKPQPR GWN + + PPR EAGTP WN
Sbjct: 2010 YRKCLDNFIRGKYPDVAESFIAKYFKKPQPRTGWNNNSK-DRPPRSEAGTP-NWN----- 2062
Query: 1209 XXXXXXXXXXXSEAGTPRGWNTDGVAQTPIQQSEAGTPSGWDSASTPAADE 1361
++GTP GWN +TP Q TP S+ A DE
Sbjct: 2063 ---RDSTPAPPEDSGTP-GWN--NTDRTP-GQDNVSTPDWNKSSQFSATDE 2106
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 246 bits (628), Expect = 2e-62
Identities = 159/400 (39%), Positives = 202/400 (50%), Gaps = 13/400 (3%)
Frame = +3
Query: 6 SKAWGSSNKESGSNDAAGWGSKVA----DESTPSKAWGSSNKESGSNNW-NSIKKNSTDS 170
S WGS+ KES +D GWG + D+ T +++ KESG W N + N D+
Sbjct: 1556 SLGWGST-KESVKSDR-GWGVSSSGGGRDKKTENQSLAGQGKESGG--WGNKVTSNQADT 1611
Query: 171 TPAQGWGSKNDTGNTKGADESTHS----KAWGXXXXXXXXXXXXXIQKNSNDSTPAQGWG 338
A GWG + N++G S S WG N N S QG
Sbjct: 1612 --ASGWGKPKSSENSQGWGLSKESGKEVHEWGVPNSAGGNGSETN-NNNENQSLVEQG-- 1666
Query: 339 SKNDTWETKVV-DESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXXXXX 515
K W+ K ++ WG K + W S + E KA
Sbjct: 1667 -KESGWDNKASSNQEGTASGWGKPKSPALSEGWGSPR---EPVKAVHGW----------- 1711
Query: 516 XXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNKRPR 695
G PN + + QW S++GDW+NKR R
Sbjct: 1712 -------GVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGWG-----SNNGDWKNKRNR 1759
Query: 696 PV---DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPAD 866
P +D NA +FT TRQRLD FT++EQD+LS+IE LM +IRRIMHQTGY DGD L AD
Sbjct: 1760 PSKPHEDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDPLSAD 1819
Query: 867 DQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLE 1046
DQ+Y++DNVF+YHPDKAVK GAG+D++TV RHS FQ+SRCFY VS DG DFSYRKCLE
Sbjct: 1820 DQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCKQDFSYRKCLE 1879
Query: 1047 NFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQGPPPPRG 1166
NF+K KYP+ A+ FI KYF + ++Q P P G
Sbjct: 1880 NFIKGKYPDLADEFIAKYFAR-------RGNRQRTPAPEG 1912
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 233 bits (594), Expect = 1e-58
Identities = 152/431 (35%), Positives = 212/431 (49%), Gaps = 41/431 (9%)
Frame = +3
Query: 12 AWGSSNKE-----SGSNDAAGWGSKVADESTPSKAWGSSNK-ESGSNNWNSIKKNS--TD 167
AWGS +K SG+ W K ++ + WGSS+K +SG+ WNS K + TD
Sbjct: 1463 AWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGATWGSSDKTKSGAAAWNSWDKKNIETD 1522
Query: 168 STPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQGWG--- 338
S PA WGS+ K ++ + AWG +K+ + PA GWG
Sbjct: 1523 SEPA-AWGSQGK----KNSETESGPAAWGAWDK----------KKSETEPGPA-GWGMGD 1566
Query: 339 SKND----------TWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSK---AAXX 479
KN W+ K D + AWGS+ + W SS KN+ +++ AA
Sbjct: 1567 KKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDAAA----WGSSDKNNSETESDAAAWG 1622
Query: 480 XXXXXXXXXXXXXXXXXXXGSPNV---DTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXX 650
G P+ D ++ D + W
Sbjct: 1623 SRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGN 1682
Query: 651 XX---PSSDG-------DW---RNKRPRPV-DDPNAPALFTATRQRLDSFTAEEQDLLSE 788
PSS G DW RN PRP + N +FTATRQRLDSFT+EEQ+LLS+
Sbjct: 1683 PAKKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSD 1742
Query: 789 IESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSE 968
+E +M+ +R+IMH + Y DGD + DD+T++++ + N+HP K K G+G+D+ITV +H+
Sbjct: 1743 VEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTI 1802
Query: 969 FQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQG 1148
F DSRCF+ VS DG DFSYRK L N+L +KYP++AE FI KYF KP+P +R+ Q
Sbjct: 1803 FSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSGNRDRNNQD 1862
Query: 1149 PPPPRGEAGTP 1181
PP E P
Sbjct: 1863 ATPPGEEQSQP 1873
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 233 bits (594), Expect = 1e-58
Identities = 152/431 (35%), Positives = 212/431 (49%), Gaps = 41/431 (9%)
Frame = +3
Query: 12 AWGSSNKE-----SGSNDAAGWGSKVADESTPSKAWGSSNK-ESGSNNWNSIKKNS--TD 167
AWGS +K SG+ W K ++ + WGSS+K +SG+ WNS K + TD
Sbjct: 1463 AWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGATWGSSDKTKSGAAAWNSWDKKNIETD 1522
Query: 168 STPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQGWG--- 338
S PA WGS+ K ++ + AWG +K+ + PA GWG
Sbjct: 1523 SEPA-AWGSQGK----KNSETESGPAAWGAWDK----------KKSETEPGPA-GWGMGD 1566
Query: 339 SKND----------TWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSK---AAXX 479
KN W+ K D + AWGS+ + W SS KN+ +++ AA
Sbjct: 1567 KKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDAAA----WGSSDKNNSETESDAAAWG 1622
Query: 480 XXXXXXXXXXXXXXXXXXXGSPNV---DTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXX 650
G P+ D ++ D + W
Sbjct: 1623 SRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGN 1682
Query: 651 XX---PSSDG-------DW---RNKRPRPV-DDPNAPALFTATRQRLDSFTAEEQDLLSE 788
PSS G DW RN PRP + N +FTATRQRLDSFT+EEQ+LLS+
Sbjct: 1683 PAKKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSD 1742
Query: 789 IESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSE 968
+E +M+ +R+IMH + Y DGD + DD+T++++ + N+HP K K G+G+D+ITV +H+
Sbjct: 1743 VEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTI 1802
Query: 969 FQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQG 1148
F DSRCF+ VS DG DFSYRK L N+L +KYP++AE FI KYF KP+P +R+ Q
Sbjct: 1803 FSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSGNRDRNNQD 1862
Query: 1149 PPPPRGEAGTP 1181
PP E P
Sbjct: 1863 ATPPGEEQSQP 1873
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 233 bits (594), Expect = 1e-58
Identities = 152/431 (35%), Positives = 212/431 (49%), Gaps = 41/431 (9%)
Frame = +3
Query: 12 AWGSSNKE-----SGSNDAAGWGSKVADESTPSKAWGSSNK-ESGSNNWNSIKKNS--TD 167
AWGS +K SG+ W K ++ + WGSS+K +SG+ WNS K + TD
Sbjct: 326 AWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGATWGSSDKTKSGAAAWNSWDKKNIETD 385
Query: 168 STPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQGWG--- 338
S PA WGS+ K ++ + AWG +K+ + PA GWG
Sbjct: 386 SEPA-AWGSQGK----KNSETESGPAAWGAWDK----------KKSETEPGPA-GWGMGD 429
Query: 339 SKND----------TWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSK---AAXX 479
KN W+ K D + AWGS+ + W SS KN+ +++ AA
Sbjct: 430 KKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDAAA----WGSSDKNNSETESDAAAWG 485
Query: 480 XXXXXXXXXXXXXXXXXXXGSPNV---DTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXX 650
G P+ D ++ D + W
Sbjct: 486 SRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGN 545
Query: 651 XX---PSSDG-------DW---RNKRPRPV-DDPNAPALFTATRQRLDSFTAEEQDLLSE 788
PSS G DW RN PRP + N +FTATRQRLDSFT+EEQ+LLS+
Sbjct: 546 PAKKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSD 605
Query: 789 IESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSE 968
+E +M+ +R+IMH + Y DGD + DD+T++++ + N+HP K K G+G+D+ITV +H+
Sbjct: 606 VEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTI 665
Query: 969 FQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQG 1148
F DSRCF+ VS DG DFSYRK L N+L +KYP++AE FI KYF KP+P +R+ Q
Sbjct: 666 FSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSGNRDRNNQD 725
Query: 1149 PPPPRGEAGTP 1181
PP E P
Sbjct: 726 ATPPGEEQSQP 736
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 229 bits (584), Expect = 2e-57
Identities = 149/441 (33%), Positives = 203/441 (46%), Gaps = 54/441 (12%)
Frame = +3
Query: 6 SKAWGSS---------NKESGS------NDAAGWGSKVADESTPSKAWGSSNKESGSNNW 140
S AWG NK G ++ W KVA E T +G + +G
Sbjct: 1470 SSAWGKKIDEADKTGWNKNDGKPQMDKLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKK 1529
Query: 141 NSIK------------KNSTDS----------TPAQGWGSKNDTGNTKGADESTHSKAWG 254
N ++ ++S D+ T + GW S TK +S S+
Sbjct: 1530 NELQMEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSP-SEQQR 1588
Query: 255 XXXXXXXXXXXXXIQKNSNDSTPAQGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNW 434
+++ SN GW +S K W ++ S+ N
Sbjct: 1589 DPAIKSWSSSHNVMKEQSNQPASTHGW-------------DSPGAKGWNDVEEQSQWNQR 1635
Query: 435 SSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXX 614
S+ KN + + GSPN +++ + QW
Sbjct: 1636 GSAVKNDQSESS----HGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSGKKSR 1691
Query: 615 XXXXXXXXXXXXXXPSSDGDWRNKRPRPV-------DDPNAPALFTATRQRLDSFTAEEQ 773
S++ +W+NK+ RP DD +A +FTATRQR+D FT+EEQ
Sbjct: 1692 PEGSRGWG-------SNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQ 1744
Query: 774 DLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITV 953
D+L ++E +M++IRRIMHQ GY DGD L ADDQ+YI+D VFN HPDKAVK G G+DY+ V
Sbjct: 1745 DILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMV 1804
Query: 954 RRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQ------ 1115
RHS F +SRCFY VS DG DFSYRKCLENF+KEKYP+ AE+FI KYF++P+
Sbjct: 1805 SRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRE 1864
Query: 1116 ----PRPGWNRDQQGPPPPRG 1166
P G NR+Q P G
Sbjct: 1865 RSVIPEDGGNREQSVVPEETG 1885
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 229 bits (584), Expect = 2e-57
Identities = 149/441 (33%), Positives = 203/441 (46%), Gaps = 54/441 (12%)
Frame = +3
Query: 6 SKAWGSS---------NKESGS------NDAAGWGSKVADESTPSKAWGSSNKESGSNNW 140
S AWG NK G ++ W KVA E T +G + +G
Sbjct: 1410 SSAWGKKIDEADKTGWNKNDGKPQMDKLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKK 1469
Query: 141 NSIK------------KNSTDS----------TPAQGWGSKNDTGNTKGADESTHSKAWG 254
N ++ ++S D+ T + GW S TK +S S+
Sbjct: 1470 NELQMEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSP-SEQQR 1528
Query: 255 XXXXXXXXXXXXXIQKNSNDSTPAQGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNW 434
+++ SN GW +S K W ++ S+ N
Sbjct: 1529 DPAIKSWSSSHNVMKEQSNQPASTHGW-------------DSPGAKGWNDVEEQSQWNQR 1575
Query: 435 SSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXX 614
S+ KN + + GSPN +++ + QW
Sbjct: 1576 GSAVKNDQSESS----HGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSGKKSR 1631
Query: 615 XXXXXXXXXXXXXXPSSDGDWRNKRPRPV-------DDPNAPALFTATRQRLDSFTAEEQ 773
S++ +W+NK+ RP DD +A +FTATRQR+D FT+EEQ
Sbjct: 1632 PEGSRGWG-------SNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQ 1684
Query: 774 DLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITV 953
D+L ++E +M++IRRIMHQ GY DGD L ADDQ+YI+D VFN HPDKAVK G G+DY+ V
Sbjct: 1685 DILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMV 1744
Query: 954 RRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQ------ 1115
RHS F +SRCFY VS DG DFSYRKCLENF+KEKYP+ AE+FI KYF++P+
Sbjct: 1745 SRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRE 1804
Query: 1116 ----PRPGWNRDQQGPPPPRG 1166
P G NR+Q P G
Sbjct: 1805 RSVIPEDGGNREQSVVPEETG 1825
>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
gi|482562261|gb|EOA26451.1| hypothetical protein
CARUB_v10022497mg [Capsella rubella]
Length = 1959
Score = 229 bits (583), Expect = 3e-57
Identities = 153/435 (35%), Positives = 219/435 (50%), Gaps = 45/435 (10%)
Frame = +3
Query: 12 AWGSSNKESGS--NDAAGWGS--------------------KVADESTPSKAWGSSNK-E 122
AWGSSNK++ +DAA WGS K ++ + + AWGSS K +
Sbjct: 1446 AWGSSNKKNSETESDAAAWGSRDKRNSDIGSGAGVLGPWNKKSSETESDAAAWGSSGKTK 1505
Query: 123 SGSNNWNSIKKNST--DSTPAQGWGSKNDTGNTKGADES-THSKAWGXXXXXXXXXXXXX 293
S + W+ KN+ DS PA GWGS+ GN K E+ ++ +WG
Sbjct: 1506 SDAATWSPWDKNNMEPDSEPA-GWGSQ---GNMKSETETESNGASWGSSGKTKSGAAAWG 1561
Query: 294 IQKNSNDSTPAQ--GWGSKNDTWETKVVDESTDLKAWGS-----SKKDSELNNWSSSQK- 449
+N T ++ WGS+ K + + +WG+ S+ +S L W + K
Sbjct: 1562 SCDKNNMETNSEPSAWGSQGK----KKAETESGPASWGAWDKKISETESGLAGWGNGDKI 1617
Query: 450 NSE-DSKAAXXXXXXXXXXXXXXXXXXXXXGSPNV---DTSS---DNDAKPQWXXXXXXX 608
NSE +S AA G+P V +T S D K QW
Sbjct: 1618 NSETESGAAAWGSWGQPSPTAADKDTNEDDGNPWVSLKETKSGEKDEKEKSQWGNPAKKF 1677
Query: 609 XXXXXXXXXXXXXXXXPSSDGDWRNKR---PRPV-DDPNAPALFTATRQRLDSFTAEEQD 776
+WR KR PRP + N +FTAT+QRLDSFT+EEQ+
Sbjct: 1678 PSDGSYGGWSN------GGGAEWRGKRNHTPRPPRSEDNLAPMFTATKQRLDSFTSEEQE 1731
Query: 777 LLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVR 956
LLS++E +M+ +R+IMH +GY DG+ + DD+T++++ + N+HP+K K G+ +D+ITV
Sbjct: 1732 LLSDVEPVMRTLRKIMHMSGYPDGEPISDDDKTFVLEKILNFHPEKERKLGSAVDFITVD 1791
Query: 957 RHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNR 1136
+H+ F D+RCF+ VS DG DFSYRK L N+L KYP++AE FI KYFKKP+P +R
Sbjct: 1792 KHTTFTDTRCFFVVSTDGAKQDFSYRKSLNNYLMTKYPDRAEEFIDKYFKKPRPSGNRDR 1851
Query: 1137 DQQGPPPPRGEAGTP 1181
+ Q PP E P
Sbjct: 1852 NNQDATPPGEEQSQP 1866
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 225 bits (574), Expect = 3e-56
Identities = 142/405 (35%), Positives = 198/405 (48%), Gaps = 19/405 (4%)
Frame = +3
Query: 3 PSKAWGSSNKESG-SNDAAGWGSKVADESTPSKAWGSSNKESGSN-----NWNSIKKNST 164
P WG+ ++SG S+D + W D + + +WG + E S +WN+ +
Sbjct: 1507 PLSGWGTEAQDSGKSSDWSEW----KDHANATASWGRNGSEENSGWDTKASWNTKALDKL 1562
Query: 165 DST------PAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPA 326
D + WG++ D +TKG ++S+ A K ++DS+
Sbjct: 1563 DDVGSAVENSSSVWGAREDF-STKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSS-- 1619
Query: 327 QGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXX 506
WG + T K D+S+ WG K +E S+ A
Sbjct: 1620 --WGKQKLTENAKGTDDSS----WGKQK-----------HTENESSQPASSNAWDLPDAT 1662
Query: 507 XXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNK 686
G + N W SS G+W+ K
Sbjct: 1663 GGSETEMQVWGQSRKEPFKKNRG---WA-----------------------SSSGEWKGK 1696
Query: 687 RPRPV-------DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTD 845
+ RP DD A++T TRQRLD FT+EEQD+LS++E +M++IRRIMHQ+GY D
Sbjct: 1697 KNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYND 1756
Query: 846 GDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADF 1025
GDRL ADD+++I DNVFNYHPDKA+K GAG+D+ V +H FQDSRC + VS DG DF
Sbjct: 1757 GDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDF 1816
Query: 1026 SYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQGPPPP 1160
SYRKCLE+F++ KYPE + FI KYF++ PR G NR+ PP P
Sbjct: 1817 SYRKCLESFIRGKYPEFVDEFIGKYFRR--PRSGGNREPSLPPVP 1859
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 223 bits (569), Expect = 1e-55
Identities = 149/431 (34%), Positives = 211/431 (48%), Gaps = 41/431 (9%)
Frame = +3
Query: 12 AWGSSNKE-----SGSNDAAGWGSKVADESTPSKAWGSSNK-ESGSNNWNSIKKNS--TD 167
AWGS +K+ SG+ W K + + WGSS+K +SG+ W+S K + TD
Sbjct: 1463 AWGSRDKKNSEVGSGAGVLGPWNKKSSKTESDGATWGSSDKTKSGAAAWSSWDKKNMETD 1522
Query: 168 STPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQGWG--- 338
S PA WGS++ + ST WG +K+ +S PA GWG
Sbjct: 1523 SEPA-AWGSQSKNKPETESGPST----WGAWDT----------KKSETESGPA-GWGIVD 1566
Query: 339 SKND----------TWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSK---AAXX 479
KN W+ K + + AWGS+ + W S KN+ +++ AA
Sbjct: 1567 KKNSETESGPAAMGNWDKKKSNTESGPAAWGST----DAAVWGFSDKNNSETESDAAAWG 1622
Query: 480 XXXXXXXXXXXXXXXXXXXGSPNVDTSSDN---DAKPQWXXXXXXXXXXXXXXXXXXXXX 650
G P ++++ D + W
Sbjct: 1623 SRDKKTSETESGAAAWGSWGQPTPTAANEDANEDDENPWVSLKETKSRDKDDKERIQWGN 1682
Query: 651 XX---PSSDG-------DWRNKR---PRPV-DDPNAPALFTATRQRLDSFTAEEQDLLSE 788
PSS G DW+ KR PRP + N +FTATRQRLDSFT+EEQ+LLS+
Sbjct: 1683 PAKKFPSSGGWSNGGGADWKGKRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSD 1742
Query: 789 IESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSE 968
+E +M+ +R+IMH + Y DGD + DD+T++++ + N+HP K K G+G+D+ITV +H+
Sbjct: 1743 VEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTI 1802
Query: 969 FQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQG 1148
F DSRCF+ VS DG DFSYRK L N+L KYP++AE FI KYF KP+P +R+ Q
Sbjct: 1803 FSDSRCFFVVSTDGAKQDFSYRKSLNNYLMMKYPDRAEEFIDKYFTKPRPSGNRDRNNQD 1862
Query: 1149 PPPPRGEAGTP 1181
PP E P
Sbjct: 1863 ATPPGEEQSQP 1873
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 221 bits (564), Expect = 5e-55
Identities = 144/431 (33%), Positives = 195/431 (45%), Gaps = 39/431 (9%)
Frame = +3
Query: 6 SKAWGSSNKESGSNDAAGWGSKVADESTPSKAWGSSNKESG--------------SNNWN 143
+K W S N SG AGW SK +++ +K W S N SG S +WN
Sbjct: 1627 AKGWNSENISSG----AGW-SKAGSDNSHAKGWNSENISSGARWSKADSDNTHAKSTDWN 1681
Query: 144 SIKKNSTDSTPA--QGW----GSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKN 305
+ + T GW K D +TK + + WG +
Sbjct: 1682 TTSDRTKTMTKNTWSGWHGEKSEKEDILSTKSQQDLPRNSDWGAVSNRENNAERAYEFVS 1741
Query: 306 SNDSTPAQGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNWSSSQ-KNSEDSKAAXXX 482
+ P Q S+ W+ K+ + + W SS + + +SS+ K DS
Sbjct: 1742 KDQPLPDQV--SEPCDWDNKLTPQKA-VSGWLSSNDEGWTKDANSSERKEPTDSPVVYNS 1798
Query: 483 XXXXXXXXXXXXXXXXXXGS--PNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXX 656
S P + + +W
Sbjct: 1799 WEKRTSSEISQNVESASFNSWLPRAGDGGEVEKPNEWVKKSGSFKKNHGETSGGWG---- 1854
Query: 657 PSSDGDWRNKR------PRPVDDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRR 818
S GDW+ K+ PR +D + LFT TRQRLD FT+EEQD LS IE MK+IRR
Sbjct: 1855 -SDSGDWKIKKNHPGKFPRMNNDNTSVRLFTETRQRLDLFTSEEQDALSLIEPTMKSIRR 1913
Query: 819 IMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAV 998
IMH++GY DGD + +DQ++I+DNVFNYHPDKA K G+G+D++ + RHS FQDSRC Y V
Sbjct: 1914 IMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQDSRCLYVV 1973
Query: 999 SVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQ----------PRPGWNRDQQG 1148
S DG DFSYRKCL N +K ++P+ A+ F+ KYF+KP+ P P WN Q
Sbjct: 1974 STDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKPGGNQDRISTPEPAWNNTQAP 2033
Query: 1149 PPPPRGEAGTP 1181
P P G P
Sbjct: 2034 TPEPSGNTMAP 2044
Score = 66.6 bits (161), Expect = 2e-08
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Frame = +3
Query: 6 SKAWGSSNKESGSNDAAGWGSKVADESTPSKAWGSSNKESGSNNWNSIKKNSTDSTPAQG 185
+K W S N SG AGW +D S+ +K W S N SG+ W+ K +D++ A+G
Sbjct: 1505 AKGWNSENISSG----AGWSKAGSDNSSHAKGWNSENISSGAG-WS---KADSDNSHAKG 1556
Query: 186 WGSKN---DTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQGWGSKNDT- 353
W S+N G +K +++H+K W + S++S+ A+GW S+N +
Sbjct: 1557 WNSENISSGAGWSKAGSDNSHAKGWNSENISSGAGWS---KAGSDNSSHAKGWNSENISS 1613
Query: 354 ---WETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSK 467
W +K +++ K W S S WS + ++ +K
Sbjct: 1614 GAGW-SKEDSDNSHAKGWNSENISSGA-GWSKAGSDNSHAK 1652
Score = 62.8 bits (151), Expect = 3e-07
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 8/162 (4%)
Frame = +3
Query: 6 SKAWGSSNKESGSNDAAGWGSKVADES-TPSKAWGSSNKESGSNNWNSIKKNSTDSTPAQ 182
SK SS + + GWG+ A E + S W S N SG+ W+ K +D++ A+
Sbjct: 1403 SKPQESSKRSDVWDATPGWGTNTASEKVSSSTGWNSENISSGA-GWS---KADSDNSHAK 1458
Query: 183 GWGSKN---DTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQGWGSKNDT 353
GW S+N G +K +++H+K W K +D++ A+GW S+N +
Sbjct: 1459 GWNSENISSGAGWSKAGSDNSHAKGWKSENISSGAGW----SKADSDNSHAKGWNSENIS 1514
Query: 354 ----WETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSK 467
W D S+ K W S S WS + ++ +K
Sbjct: 1515 SGAGWSKAGSDNSSHAKGWNSENISSGA-GWSKADSDNSHAK 1555
Score = 60.1 bits (144), Expect = 2e-06
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Frame = +3
Query: 6 SKAWGSSNKESGSNDAAGWGSKVADESTPSKAWGSSNKESGSNNWNSIKKNSTDSTPAQG 185
+K W S N SG AGW +D S+ +K W S N SG+ W+ K +D++ A+G
Sbjct: 1578 AKGWNSENISSG----AGWSKAGSDNSSHAKGWNSENISSGA-GWS---KEDSDNSHAKG 1629
Query: 186 WGSKN---DTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQG--WGSKND 350
W S+N G +K +++H+K W K +D+T A+ W + +D
Sbjct: 1630 WNSENISSGAGWSKAGSDNSHAKGWNSENISSGARW----SKADSDNTHAKSTDWNTTSD 1685
Query: 351 TWETKVVDESTDLKAWGSSKKDSE 422
TK + ++T W K + E
Sbjct: 1686 --RTKTMTKNT-WSGWHGEKSEKE 1706
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 221 bits (563), Expect = 6e-55
Identities = 148/434 (34%), Positives = 201/434 (46%), Gaps = 53/434 (12%)
Frame = +3
Query: 18 GSSNKE-SGSNDAAGWGSKVADE--------STPSKAWGSSNKESGSNNWNSIKKNSTDS 170
GS++K SG A WG D+ + PS AWG+ S+ K +
Sbjct: 1444 GSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAE 1503
Query: 171 TPAQGWGSK-NDTGNTKG----ADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQGW 335
P GWG++ D+G + D + + +WG N S GW
Sbjct: 1504 NPLSGWGTEAQDSGKSSDWSEWKDHANATASWGR-----------------NGSEENSGW 1546
Query: 336 GSKNDTWETKVVD-------------------ESTDLKAWGSSKKDS--------ELNNW 434
+K +W+TK +D E K W S K S ++ W
Sbjct: 1547 DTKA-SWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGW 1605
Query: 435 S-SSQKNSEDS---KAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXX 602
+ K ++DS K SP +S+ D
Sbjct: 1606 NVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSET 1665
Query: 603 XXXXXXXXXXXXXXXXXX-PSSDGDWRNKRPRPV-------DDPNAPALFTATRQRLDSF 758
SS G+W+ K+ RP DD A++T TRQRLD F
Sbjct: 1666 EMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMF 1725
Query: 759 TAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGL 938
T+EEQD+LS +E +M++IRRIMHQ+GY DGDRL ADD+++I DNVFNYHPDKA+K GAG+
Sbjct: 1726 TSEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGI 1785
Query: 939 DYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQP 1118
D+ V +H FQDSRC + VS DG DFSYRKCLE+F++ KYP+ + FI KYF++ P
Sbjct: 1786 DHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRR--P 1843
Query: 1119 RPGWNRDQQGPPPP 1160
R G NR+ PP P
Sbjct: 1844 RSGGNREPSLPPVP 1857
>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|590569189|ref|XP_007011000.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 219 bits (559), Expect = 2e-54
Identities = 137/384 (35%), Positives = 194/384 (50%), Gaps = 17/384 (4%)
Frame = +3
Query: 15 WGSSNKESGSNDAAGWGSKVADESTPSKAWGSSNKESGSNNWNSIKKNST---DSTPAQG 185
WG+S ++ AA G T WG K S K + T + T
Sbjct: 1437 WGTSKSKTQDVAAAVTG-------TMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSD 1489
Query: 186 WG-SKNDTGN---------TKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPAQGW 335
WG KNDT + + GAD T +WG + ++ND+ P GW
Sbjct: 1490 WGLKKNDTQDVSMEEKTFKSNGADTGT---SWGTMGKESE-------KPDANDALPWSGW 1539
Query: 336 GSKNDTWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXXXXX 515
G++ D TK +D+S+ W K W S ++++ + +
Sbjct: 1540 GTQ-DVIPTKTLDDSSKSSGWEQQKSPECSQGWGSLDESNQPASS--------------- 1583
Query: 516 XXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNKRPR 695
+PN S+ ++ + QW +SD +N +
Sbjct: 1584 ----NGWDTPNGLGSTQSEKQHQWGQSRGSRRW---------------ASDASKKNHPVK 1624
Query: 696 PV----DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPA 863
DD + A++TATRQRLD FT+EEQD+LS++E LM++IR+IMHQ+GY DGD L A
Sbjct: 1625 SARVMNDDSSMAAMYTATRQRLDMFTSEEQDILSDVEPLMQSIRKIMHQSGYNDGDPLSA 1684
Query: 864 DDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCL 1043
DQ++I++NVF +HPDKA+K GAG+DY+ V +HS F DSRCFY VS DG DFSYRKCL
Sbjct: 1685 LDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHSNFPDSRCFYVVSTDGRKQDFSYRKCL 1744
Query: 1044 ENFLKEKYPEKAESFIPKYFKKPQ 1115
+NF+K KYP+ A+ FI KYF+KP+
Sbjct: 1745 DNFIKGKYPDMADVFIAKYFRKPR 1768
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 215 bits (547), Expect = 4e-53
Identities = 131/399 (32%), Positives = 197/399 (49%), Gaps = 20/399 (5%)
Frame = +3
Query: 6 SKAWGS----SNKESGSNDAAGWGSKVADESTPSKAWGSSNKESGSNNWNSIKKN----- 158
+ +WGS +K+S + A V + S + +++ G++ W K
Sbjct: 1560 TSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKP 1619
Query: 159 --STDSTPAQGWGSK--NDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPA 326
+ + + GWGS+ ++ G+ G D+ T+ + +
Sbjct: 1620 SLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEAS 1679
Query: 327 QGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXX 506
Q WGS+ND+ L +WG ++ SE + S +S
Sbjct: 1680 QSWGSQNDS-----------LGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQ 1728
Query: 507 XXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNK 686
GS SS+ + W + G+W+N+
Sbjct: 1729 QKSPEVSHGWGSHK--ESSEQTSSHGWDKKNQGSKGWG-------------GNAGEWKNR 1773
Query: 687 RPRPV-------DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTD 845
+ RP DD N AL+TA+ QRLD FT+EEQD+L++IE +M++IR++MHQ+GY D
Sbjct: 1774 KNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYND 1833
Query: 846 GDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADF 1025
GD L A+DQ++++ +VFN+HPDKA K GAG+D+ V RHS FQ+SRCFY V+ DG DF
Sbjct: 1834 GDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDF 1893
Query: 1026 SYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQ 1142
SYRKCL+NF+K KYP+ AE F+ KYF+K PRP NRD+
Sbjct: 1894 SYRKCLDNFIKGKYPDLAEMFVAKYFRK--PRPNRNRDR 1930
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 215 bits (547), Expect = 4e-53
Identities = 131/399 (32%), Positives = 197/399 (49%), Gaps = 20/399 (5%)
Frame = +3
Query: 6 SKAWGS----SNKESGSNDAAGWGSKVADESTPSKAWGSSNKESGSNNWNSIKKN----- 158
+ +WGS +K+S + A V + S + +++ G++ W K
Sbjct: 1620 TSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKP 1679
Query: 159 --STDSTPAQGWGSK--NDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDSTPA 326
+ + + GWGS+ ++ G+ G D+ T+ + +
Sbjct: 1680 SLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEAS 1739
Query: 327 QGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXX 506
Q WGS+ND+ L +WG ++ SE + S +S
Sbjct: 1740 QSWGSQNDS-----------LGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQ 1788
Query: 507 XXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNK 686
GS SS+ + W + G+W+N+
Sbjct: 1789 QKSPEVSHGWGSNK--ESSEQTSSHGWDKKNQGSKGWG-------------GNAGEWKNR 1833
Query: 687 RPRPV-------DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTD 845
+ RP DD N AL+TA+ QRLD FT+EEQD+L++IE +M++IR++MHQ+GY D
Sbjct: 1834 KNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYND 1893
Query: 846 GDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADF 1025
GD L A+DQ++++ +VFN+HPDKA K GAG+D+ V RHS FQ+SRCFY V+ DG DF
Sbjct: 1894 GDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDF 1953
Query: 1026 SYRKCLENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQ 1142
SYRKCL+NF+K KYP+ AE F+ KYF+K PRP NRD+
Sbjct: 1954 SYRKCLDNFIKGKYPDLAEMFVAKYFRK--PRPNRNRDR 1990
>ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
gi|561006762|gb|ESW05756.1| hypothetical protein
PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 212 bits (539), Expect = 4e-52
Identities = 145/428 (33%), Positives = 206/428 (48%), Gaps = 36/428 (8%)
Frame = +3
Query: 6 SKAWGSSNK---ESGSNDAAGWGSKVAD-----ESTPSKAWGSSNKE-------SGSNNW 140
S AWG+++ +S SN+ +G G ++ +WGS ++ S S +W
Sbjct: 1640 SDAWGANSTGQTKSKSNEWSGRGKNKSEIPAGGSENVQDSWGSGTRKDVTQVDTSVSGSW 1699
Query: 141 NSIKKNSTDSTPAQ--GWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSND 314
+K+ T++T + GWG +N + G E+ +WG D
Sbjct: 1700 GGSRKDQTNTTSNEWAGWG-RNKSEIPAGGCETVQEDSWGSGKLKDDV--------TQKD 1750
Query: 315 STPAQGWGSKN--------DTWETKVVD------ESTDLKAW--GSSKKDSELNNWSSSQ 446
++ + WG+ D W V+ E +W G+ K +S++ N S +
Sbjct: 1751 NSGSGAWGANKTGLTKTEVDEWARNKVETADGGSEKLQEDSWNSGNLKSESKVGNASWGK 1810
Query: 447 KNSEDSKAAXXXXXXXXXXXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXX 626
NS S++ S +SD++ QW
Sbjct: 1811 PNSSGSQS------WDSHNQSNQNSSSRGWESHIASANSDSEKGFQWGKQGRESFKKNRF 1864
Query: 627 XXXXXXXXXXPSSDGDWRNKRPRPVDDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMK 806
S+ GDW+N R RP P P QRLD +++EEQD+L EIE +M+
Sbjct: 1865 EGSQGRG----SNSGDWKN-RNRP---PRTPG------QRLDLYSSEEQDVLKEIEPIMQ 1910
Query: 807 NIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRC 986
+IRRIM Q GY DGD L ADDQ ++++NVF +HPDK K GAG+DY+ V +HS FQDSRC
Sbjct: 1911 SIRRIMQQQGYNDGDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRC 1970
Query: 987 FYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKKPQPR---PGWNRDQQGPPP 1157
FY V DG DFSYRKCL+N++++KYPE AESF KYF+KP+ R R Q P
Sbjct: 1971 FYVVLKDGRREDFSYRKCLDNWIRKKYPELAESFFGKYFRKPRNRAEQTATPRGDQTAMP 2030
Query: 1158 PRGEAGTP 1181
PR EA TP
Sbjct: 2031 PRDEAATP 2038
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 211 bits (536), Expect = 8e-52
Identities = 140/401 (34%), Positives = 198/401 (49%), Gaps = 33/401 (8%)
Frame = +3
Query: 6 SKAWGSSNKESGSNDAAGWGSKVADESTPSKAWGSSNKESGSNNWN------------SI 149
S AW ++ + A+ WG+ A E++ S WG++ + N+W S+
Sbjct: 1439 SSAWATNTAREDA--ASAWGTNPAKENSTS-TWGTTR--ANENDWCGREVGQDDSASLSV 1493
Query: 150 KKNSTDSTPAQGWGS---KNDTGNTKG---ADESTHSKAWGXXXXXXXXXXXXXIQKNSN 311
KK+S T + W + + D + G A E+T S WG + +
Sbjct: 1494 KKSSVLDT-SSAWATNTAREDAASAWGKHPAKENTTS-TWGTTTASENDWCGRGV--GHD 1549
Query: 312 DSTPAQGWGSK----NDTWETKVVDESTDLKAWGSSK-KDSELNNWSSSQKNSED--SKA 470
DS G S + W T E AWG + K++ + W ++ + D +
Sbjct: 1550 DSASLSGKKSSVLNTSSVWATNTAREDAT-SAWGKNPAKENTTSTWGTTTASENDWCGRE 1608
Query: 471 AXXXXXXXXXXXXXXXXXXXXXG--SPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXX 644
A G SP D +S + QW
Sbjct: 1609 AGKVEPVDLQPTKPQDDSASLSGWDSPTGDGNS-GERNHQWGQHRGDQTKKNRFEGARNW 1667
Query: 645 XXXXPSSDGDWRNKRPRPV------DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMK 806
SS G+W+NK P D+ AL+T TRQRLD FT+EEQD+LS IE +M+
Sbjct: 1668 V----SSPGEWKNKNRPPKSPGMVNDNSTMGALYTVTRQRLDMFTSEEQDVLSNIEPVMR 1723
Query: 807 NIRRIMHQTGYTDGDRLPADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRC 986
++RRIMHQ+GY DGD L DDQ++++DNVFNYHPDKA K G G+D++TV RH FQDSRC
Sbjct: 1724 SLRRIMHQSGYNDGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRC 1783
Query: 987 FYAVSVDGVLADFSYRKCLENFLKEKYPEKAESFIPKYFKK 1109
F+ VS DG DFSYRKCL+N+++EK+P+ AE+FI KYF +
Sbjct: 1784 FFVVSTDGRTEDFSYRKCLDNYIREKFPDLAETFIGKYFSR 1824
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 207 bits (528), Expect = 7e-51
Identities = 130/383 (33%), Positives = 182/383 (47%), Gaps = 19/383 (4%)
Frame = +3
Query: 30 KESGSNDAAGWGSKVADESTPSKAWGSSNKESGSNNWNSIKKNSTDSTPAQGWGSKNDTG 209
K N +GWG K +++ G E + +S K+ S D++ W +
Sbjct: 1625 KPQTENAGSGWGMKGSEKK------GDIELEQDESTRHSWKQKSADASSQGAWERQKSPD 1678
Query: 210 NTKGADESTHSK-----AWGXXXXXXXXXXXXXIQKNSNDSTPAQG-WGSKND------T 353
+KG E S AWG ++K + ST +QG WG +
Sbjct: 1679 TSKGTWEQPKSAEMSHGAWGQQKSPDVSQGVWGLEKPA--STNSQGSWGQQKSPEIPQGN 1736
Query: 354 WETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXXXXXXXXXXXXX 533
W + + + WG K QK S+ S+ A
Sbjct: 1737 WGQQTSPDISQ-GTWGQQKSPEMSQGSWGQQKPSDTSQPATVNQW--------------- 1780
Query: 534 XGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWRNKRPRPV---- 701
S ++A + P++ G+W+ K RP
Sbjct: 1781 --------DSQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGPNA-GEWKGKNSRPAKSPG 1831
Query: 702 ---DDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLPADDQ 872
DD + A++TATRQRLD FT+EEQD+LS IE M +IRRIMHQ+GY DGD+L A+D
Sbjct: 1832 MVNDDSSVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGDQLSAEDH 1891
Query: 873 TYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKCLENF 1052
++I+D VFN+HP+K K G+G+DY TV RH FQ+SRC + +S DG DFSYRKCL+N
Sbjct: 1892 SFILDKVFNFHPEKEAKMGSGIDYFTVDRHGSFQESRCLFVISTDGRKEDFSYRKCLQNM 1951
Query: 1053 LKEKYPEKAESFIPKYFKKPQPR 1121
+KEKYPE AE+F KYF +P+PR
Sbjct: 1952 IKEKYPELAEAFNDKYFSRPRPR 1974
>ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|355521872|gb|AET02326.1| Protein
DCL [Medicago truncatula]
Length = 481
Score = 206 bits (524), Expect = 2e-50
Identities = 151/474 (31%), Positives = 217/474 (45%), Gaps = 18/474 (3%)
Frame = +3
Query: 6 SKAWGSSNKESGSNDAAGWGSK------VADESTPSKAWGSSNKESGSNNW-------NS 146
S AWG++ +S N ++ WG K + ++S+ S AW E+ ++W NS
Sbjct: 81 SSAWGATKPKSNDNRSS-WGQKKDEIHVMPEDSSRSNAW-EQKPENVKDSWVAKVPVANS 138
Query: 147 I--KKNSTDSTPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDST 320
K S ++ P W SKN+ N+ G S ++ W KN +DS+
Sbjct: 139 SWGKAKSPENRP---WDSKNEPNNSFGKPNSQENEPWD--------------SKNESDSS 181
Query: 321 PAQGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXX 500
+ ++ W++K S+ WG K E + W S ++++ + +
Sbjct: 182 WGKPKSQESQPWDSKNESNSS----WGKPKSQ-ENHPWDSKNESNQTAGSRGWD------ 230
Query: 501 XXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWR 680
S +S++D QW + GDW+
Sbjct: 231 -------------SQVASANSESDKSFQWGKQGRDSFKKNRFEGSQSGGP----NAGDWK 273
Query: 681 NKRPRPVDDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLP 860
N R RPV P QR + +T EEQD++ +IE ++++IRRIM GY DGD L
Sbjct: 274 N-RSRPVRPPG---------QRFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLA 323
Query: 861 ADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKC 1040
+DQ Y+++NVF +HPDK K G G+D++ V +HS FQDSRC Y V DG DFSYRKC
Sbjct: 324 NEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKC 383
Query: 1041 LENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQGPPPPRGE---AGTPRGWNXXXXXX 1211
LEN +++KYPE AESF KYF+KPQPR RDQ P P GE A P G
Sbjct: 384 LENLVRKKYPETAESFCGKYFRKPQPRV--KRDQ--TPNPAGEQTAAPNPAG-------- 431
Query: 1212 XXXXXXXXXXSEAGTPRGWNTDGVAQTPIQQSEAGTPSGWDSASTPAADEGGTP 1373
+ A P G T P +Q+ P+ + TPA D+ TP
Sbjct: 432 --------EQTAAPNPAGEQT-ATQNPPGEQTSTPNPAE-EQTPTPAGDQTSTP 475
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 206 bits (524), Expect = 2e-50
Identities = 151/474 (31%), Positives = 217/474 (45%), Gaps = 18/474 (3%)
Frame = +3
Query: 6 SKAWGSSNKESGSNDAAGWGSK------VADESTPSKAWGSSNKESGSNNW-------NS 146
S AWG++ +S N ++ WG K + ++S+ S AW E+ ++W NS
Sbjct: 1632 SSAWGATKPKSNDNRSS-WGQKKDEIHVMPEDSSRSNAW-EQKPENVKDSWVAKVPVANS 1689
Query: 147 I--KKNSTDSTPAQGWGSKNDTGNTKGADESTHSKAWGXXXXXXXXXXXXXIQKNSNDST 320
K S ++ P W SKN+ N+ G S ++ W KN +DS+
Sbjct: 1690 SWGKAKSPENRP---WDSKNEPNNSFGKPNSQENEPWD--------------SKNESDSS 1732
Query: 321 PAQGWGSKNDTWETKVVDESTDLKAWGSSKKDSELNNWSSSQKNSEDSKAAXXXXXXXXX 500
+ ++ W++K S+ WG K E + W S ++++ + +
Sbjct: 1733 WGKPKSQESQPWDSKNESNSS----WGKPKSQ-ENHPWDSKNESNQTAGSRGWD------ 1781
Query: 501 XXXXXXXXXXXXGSPNVDTSSDNDAKPQWXXXXXXXXXXXXXXXXXXXXXXXPSSDGDWR 680
S +S++D QW + GDW+
Sbjct: 1782 -------------SQVASANSESDKSFQWGKQGRDSFKKNRFEGSQSGGP----NAGDWK 1824
Query: 681 NKRPRPVDDPNAPALFTATRQRLDSFTAEEQDLLSEIESLMKNIRRIMHQTGYTDGDRLP 860
N R RPV P QR + +T EEQD++ +IE ++++IRRIM GY DGD L
Sbjct: 1825 N-RSRPVRPPG---------QRFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLA 1874
Query: 861 ADDQTYIVDNVFNYHPDKAVKAGAGLDYITVRRHSEFQDSRCFYAVSVDGVLADFSYRKC 1040
+DQ Y+++NVF +HPDK K G G+D++ V +HS FQDSRC Y V DG DFSYRKC
Sbjct: 1875 NEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKC 1934
Query: 1041 LENFLKEKYPEKAESFIPKYFKKPQPRPGWNRDQQGPPPPRGE---AGTPRGWNXXXXXX 1211
LEN +++KYPE AESF KYF+KPQPR RDQ P P GE A P G
Sbjct: 1935 LENLVRKKYPETAESFCGKYFRKPQPRV--KRDQ--TPNPAGEQTAAPNPAG-------- 1982
Query: 1212 XXXXXXXXXXSEAGTPRGWNTDGVAQTPIQQSEAGTPSGWDSASTPAADEGGTP 1373
+ A P G T P +Q+ P+ + TPA D+ TP
Sbjct: 1983 --------EQTAAPNPAGEQT-ATQNPPGEQTSTPNPAE-EQTPTPAGDQTSTP 2026