BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00006770
         (822 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   255   2e-65
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   251   2e-64
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   231   2e-58
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               229   1e-57
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   223   5e-56
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   223   9e-56
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   221   3e-55
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   221   3e-55
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   219   7e-55
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                218   2e-54
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   216   6e-54
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       214   2e-53
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   213   7e-53
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           213   7e-53
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               211   3e-52
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   211   3e-52
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   210   6e-52
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   208   2e-51
emb|CAB75484.1| putative protein [Arabidopsis thaliana]               207   3e-51
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   207   4e-51

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  255 bits (651), Expect = 2e-65
 Identities = 124/266 (46%), Positives = 173/266 (65%)
 Frame = -1

Query: 798  LDWNVARSGPLLNSLDQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIG 619
            +D N  R G  L++  + +++  + + EI +AL  IGNDKAPG DGF A FFK +W  I 
Sbjct: 415  VDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIK 474

Query: 618  DDVTSAVSEFFTKGLILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNR 439
             ++ + + EFF    + R +N   +TL+PK  H   V +FRPIAC  V+YK I+K+LTNR
Sbjct: 475  QEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNR 534

Query: 438  MAPILLKLINPAQAAFIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSIS 259
            M  I+ +++N AQ+ FI GR I DN  LA ELIR Y RK +S PRC++K+D++KAY S+ 
Sbjct: 535  MKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMS-PRCIMKVDIRKAYDSVE 593

Query: 258  WDFLHDVLIGFNFHPCFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFL 79
            W FL  +L  F F   F+ W+M CV++ ++++ +NG      + R+GLRQGDPMSP LF 
Sbjct: 594  WSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFA 653

Query: 78   LCMEYLSRLFTVRTLNPDFRFHAKCD 1
            LCMEYLSR       +PDF FH KC+
Sbjct: 654  LCMEYLSRCLEELKGSPDFNFHPKCE 679


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  251 bits (641), Expect = 2e-64
 Identities = 123/274 (44%), Positives = 181/274 (66%), Gaps = 1/274 (0%)
 Frame = -1

Query: 822 GISVPRTPL-DWNVARSGPLLNSLDQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASF 646
           G SV   P+ D NV + GP+L+   Q  + +     E+K+ LFS+ + KAPG DG+   F
Sbjct: 89  GSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAVEVKNVLFSMDSSKAPGIDGYNVHF 148

Query: 645 FKMNWDLIGDDVTSAVSEFFTKGLILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYK 466
           FK +W++IGD V  A+ +FF  G + + +N T +TL+PK+ +  +V +FRPIAC +V+YK
Sbjct: 149 FKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYK 208

Query: 465 TITKILTNRMAPILLKLINPAQAAFIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKID 286
            I+KILT+RM  +L  +++  Q+AF+KGR I DN  L+ EL++ Y RK +S PRCMVKID
Sbjct: 209 IISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGIS-PRCMVKID 267

Query: 285 LQKAYGSISWDFLHDVLIGFNFHPCFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQG 106
           LQKAY S+ W F+  +++   F   F++WVM C+T+ ++T +ING        ++GLRQG
Sbjct: 268 LQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPFAAKKGLRQG 327

Query: 105 DPMSPSLFLLCMEYLSRLFTVRTLNPDFRFHAKC 4
           DP+SP LF++CMEYL+        N  FRFH +C
Sbjct: 328 DPISPYLFVICMEYLNICLIQLRKNAAFRFHPRC 361


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  231 bits (590), Expect = 2e-58
 Identities = 106/250 (42%), Positives = 162/250 (64%)
 Frame = -1

Query: 753  DQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGL 574
            DQ +++ P+  +EI+  LF + +DK+PGPDG+ + FFK  W++IGD+ T AV  FFTKG 
Sbjct: 445  DQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGF 504

Query: 573  ILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAA 394
            + + +N T + LIPKK+    + D+RPI+C NV+YK I+KI+ NR+  +L K I   Q+A
Sbjct: 505  LPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSA 564

Query: 393  FIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHP 214
            F+K R + +N  LA EL++ Y +  +S  RC +KID+ KA+ S+ W FL +V     F  
Sbjct: 565  FVKDRLLIENLLLATELVKDYHKDTIS-TRCAIKIDISKAFDSVQWPFLINVFTILGFPR 623

Query: 213  CFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTL 34
             FIHW+  C+T+ +F++ +NG   G+ +  RGLRQG  +SP LF++CM+ LS++      
Sbjct: 624  EFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAA 683

Query: 33   NPDFRFHAKC 4
               F +H KC
Sbjct: 684  ARHFGYHPKC 693


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  229 bits (583), Expect = 1e-57
 Identities = 104/250 (41%), Positives = 158/250 (63%)
 Frame = -1

Query: 753 DQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGL 574
           D   +   + ++EIK  LFS+  DK+PGPDG+ + F+K  WD+IG + T  V  FF KG 
Sbjct: 92  DNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGF 151

Query: 573 ILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAA 394
           + + +N   + LIPKK     + D+RPI+C NV+YK I+KI+ NR+  +L + I   Q+A
Sbjct: 152 LPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSA 211

Query: 393 FIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHP 214
           F+K R + +N  LA EL++ Y +  +S  RC +KID+ KA+ S+ W FL + L+  NF P
Sbjct: 212 FVKDRLLIENLLLATELVKDYHKDSIS-ARCAIKIDISKAFDSVQWSFLTNTLVAMNFSP 270

Query: 213 CFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTL 34
            FIHW+  C+T+ +F++ +NG   G+ + +RGLRQG  +SP LF++CM+ LS++      
Sbjct: 271 TFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAG 330

Query: 33  NPDFRFHAKC 4
              F FH KC
Sbjct: 331 VRKFGFHPKC 340


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  223 bits (569), Expect = 5e-56
 Identities = 112/266 (42%), Positives = 165/266 (62%)
 Frame = -1

Query: 798  LDWNVARSGPLLNSLDQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIG 619
            +D +V R G  L++   + +V PI  +EI  AL  I + KAPG DGF + FFK +W +I 
Sbjct: 418  IDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIK 477

Query: 618  DDVTSAVSEFFTKGLILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNR 439
             ++   + +FF  G + + +N T++TLIPK        D+RPIAC + +YK I+KILT R
Sbjct: 478  QEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKR 537

Query: 438  MAPILLKLINPAQAAFIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSIS 259
            +  ++ ++++ AQ  FI  R I DN  LA ELIR Y R+ +S PRC++K+D++KAY S+ 
Sbjct: 538  LQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVS-PRCVIKVDIRKAYDSVE 596

Query: 258  WDFLHDVLIGFNFHPCFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFL 79
            W FL  +L    F   FI W+M CV + ++++ +NG        ++GLRQGDP+SP LF 
Sbjct: 597  WVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFA 656

Query: 78   LCMEYLSRLFTVRTLNPDFRFHAKCD 1
            L MEYLSR       +P+F FH KC+
Sbjct: 657  LSMEYLSRCMGNMCKDPEFNFHPKCE 682


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  223 bits (567), Expect = 9e-56
 Identities = 100/243 (41%), Positives = 164/243 (67%)
 Frame = -1

Query: 735  APIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGLILRELN 556
            A +   +IK   F++ ++K+PGPDG+ + FFK  W ++G  + +AV EFF  G +L + N
Sbjct: 444  AEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWN 503

Query: 555  HTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAAFIKGRS 376
             T++T++PKK +   + +FRPI+C N +YK I+K+L  R+  IL   I+P+Q+AF+KGR 
Sbjct: 504  STAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRL 563

Query: 375  ITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHPCFIHWV 196
            +T+N  LA EL++ + +  +S  R ++K+DL+KA+ S+ W F+ + L   N  P F++W+
Sbjct: 564  LTENVLLATELVQGFGQANIS-SRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWI 622

Query: 195  MTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTLNPDFRF 16
              C+TST+F+++++G   G+ KG +GLRQGDP+SPSLF++ ME LSRL   +  +    +
Sbjct: 623  KQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGY 682

Query: 15   HAK 7
            H K
Sbjct: 683  HPK 685


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  221 bits (563), Expect = 3e-55
 Identities = 104/250 (41%), Positives = 158/250 (63%)
 Frame = -1

Query: 753 DQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGL 574
           D   +   +  +EIK  +FS+  DK+PGPDG+ + F+K +W++IGD+V  A+  FF KG 
Sbjct: 166 DHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGF 225

Query: 573 ILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAA 394
           + + +N T + LIPKK     + D+RPI+C NV+YK I+KIL NR+  IL K I   Q+A
Sbjct: 226 LPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSA 285

Query: 393 FIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHP 214
           F+K R + +N  LA EL++ Y +  +S  RC +KID+ KA+ S+ W FL  VL   NF  
Sbjct: 286 FVKDRLLIENVLLATELVKDYHKDSIS-TRCAMKIDISKAFDSLQWSFLTHVLAAMNFPG 344

Query: 213 CFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTL 34
            FIHW+  C+++ +F++ +NG   G+ +  RGLRQG  +SP LF++ M+ LSR+      
Sbjct: 345 EFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAG 404

Query: 33  NPDFRFHAKC 4
             +F +H +C
Sbjct: 405 AREFGYHPRC 414


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  221 bits (562), Expect = 3e-55
 Identities = 103/251 (41%), Positives = 157/251 (62%)
 Frame = -1

Query: 753  DQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGL 574
            DQ+ +   +  +EI+  LF++ N+K+PGPDG+ + FFK  W L G D  +A+  FF KG 
Sbjct: 742  DQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGF 801

Query: 573  ILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAA 394
            + + LN T + LIPKK     + D+RPI+C NV+YK I+KIL NR+  +L   I   Q+A
Sbjct: 802  LPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSA 861

Query: 393  FIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHP 214
            F+K R + +N  LA EL++ Y ++ ++ PRC +KID+ KA+ S+ W FL + L   NF  
Sbjct: 862  FVKERLLMENVLLATELVKDYHKESVT-PRCAMKIDISKAFDSVQWQFLLNTLEALNFPE 920

Query: 213  CFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTL 34
             F HW+  C+++ TF++ +NG   GF    RGLRQG  +SP LF++CM  LS +     +
Sbjct: 921  TFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAV 980

Query: 33   NPDFRFHAKCD 1
            + +  +H KC+
Sbjct: 981  HRNIGYHPKCE 991


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  219 bits (559), Expect = 7e-55
 Identities = 111/260 (42%), Positives = 163/260 (62%), Gaps = 5/260 (1%)
 Frame = -1

Query: 771  PLLNSLDQSTIVA-PIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVS 595
            P   S DQ   +A     ++IK A FS  ++K  GPDGFP  FFK  W +IG +VT AVS
Sbjct: 381  PFRCSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVS 440

Query: 594  EFFTKGLILRELNHTSITLIPKKSHEPTVGDFRPIACTN----VVYKTITKILTNRMAPI 427
            EFFT  ++L++ N T++ LIPK ++   + DFRPI+C +     +YK I ++LTNR+  +
Sbjct: 441  EFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCL 500

Query: 426  LLKLINPAQAAFIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFL 247
            L ++I+P Q+AF+ GR + +N  LA EL++ Y R+ + P R M+K+DL+KA+ SI WDF+
Sbjct: 501  LSQVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDP-RGMLKVDLRKAFDSIRWDFI 559

Query: 246  HDVLIGFNFHPCFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCME 67
               L        F++W+  C+++ TF++ +NG T GF K  RGLRQG+P+SP LF+L ME
Sbjct: 560  ISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAME 619

Query: 66   YLSRLFTVRTLNPDFRFHAK 7
              S L   R       +H K
Sbjct: 620  VFSSLLNSRFQAGYIHYHPK 639


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  218 bits (555), Expect = 2e-54
 Identities = 100/253 (39%), Positives = 157/253 (62%)
 Frame = -1

Query: 762 NSLDQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFT 583
           ++ DQ  +   + ++E +  LF++ ++K PGPDG+ + FFK  W + G D  +A+  FF 
Sbjct: 15  SATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFI 74

Query: 582 KGLILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPA 403
           KG + + LN T + LIPKK     + D+RPI+C NV+YK I+KI+ NR+  +L   I   
Sbjct: 75  KGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQN 134

Query: 402 QAAFIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFN 223
           Q+AF++ R + +N  LA EL++ Y +  +S PRC +KID+ KA+ S+ W FL + L   N
Sbjct: 135 QSAFVRERLLIENVLLATELVKDYHKDSIS-PRCAMKIDISKAFDSVQWQFLLNTLEALN 193

Query: 222 FHPCFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTV 43
           F   F HW+  C+++ TF++ +NG   GF   +RGLRQG  +SP LF++CM  LS +  V
Sbjct: 194 FPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDV 253

Query: 42  RTLNPDFRFHAKC 4
             ++ +  +H KC
Sbjct: 254 AAVHRNIGYHPKC 266


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
           subsp. vesca]
          Length = 958

 Score =  216 bits (551), Expect = 6e-54
 Identities = 110/241 (45%), Positives = 151/241 (62%), Gaps = 2/241 (0%)
 Frame = -1

Query: 717 EIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSA-VSEFFTKGLILRELNHTSIT 541
           +I+   FS+  +K+PGPDGF   FF+  W +IGD+V +A V EFF+ G +L ELN T IT
Sbjct: 277 DIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIIT 336

Query: 540 LIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAAFIKGRSITDNF 361
           L+PK ++  T+ DFRPI+C N  YK I K+L NR+   L  ++ P+Q+ FI GR I DN 
Sbjct: 337 LVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNI 396

Query: 360 FLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHPCFIHWVMTCVT 181
            LAQE+I  Y  K    PRC   +D+ KA  ++ WDF+   L  FN     I W+ +C++
Sbjct: 397 LLAQEIICDY-HKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCIS 455

Query: 180 STTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVR-TLNPDFRFHAKC 4
           S  F++ +NG   GF   RRGLRQGDP+SP LF++ ME LS     R   +P FR+H +C
Sbjct: 456 SAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRC 515

Query: 3   D 1
           D
Sbjct: 516 D 516


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  214 bits (546), Expect = 2e-53
 Identities = 105/238 (44%), Positives = 156/238 (65%)
 Frame = -1

Query: 720  KEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGLILRELNHTSIT 541
            ++I+ ALFS+  +K+ GPDGF A FF  +W ++G +VT A+ EFF+ G +L++ N T+I 
Sbjct: 450  EDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIV 509

Query: 540  LIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAAFIKGRSITDNF 361
            LIPK  +     DFRPI+C N +YK I ++LT+R+  +L  +I+ AQ+AF+ GRS+ +N 
Sbjct: 510  LIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENV 569

Query: 360  FLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHPCFIHWVMTCVT 181
             LA +L+  Y    +S PR M+K+DL+KA+ S+ W+F+   L        FI+W+  C++
Sbjct: 570  LLATDLVHGYNWSNIS-PRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCIS 628

Query: 180  STTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTLNPDFRFHAK 7
            + TFT+SINGG  GF K  +GLRQGDP+SP LF+L ME  S L   R  +    +H K
Sbjct: 629  TPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPK 686


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  213 bits (542), Expect = 7e-53
 Identities = 101/237 (42%), Positives = 155/237 (65%)
 Frame = -1

Query: 717  EIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGLILRELNHTSITL 538
            EIK A  S+  +K  GPDG+   FF+  W +IG +V +A+ EFF  G +L++ N T++ L
Sbjct: 311  EIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVL 370

Query: 537  IPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAAFIKGRSITDNFF 358
            IPK S+  T+ +FRPI+C N +YK I+K+LT+R+  +L  +I  +Q+AF+ GRS+ +N  
Sbjct: 371  IPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVL 430

Query: 357  LAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHPCFIHWVMTCVTS 178
            LA E++  Y R  +S PR M+K+DL+KA+ S+ W+F+   L        +I+W+  C+T+
Sbjct: 431  LATEMVHGYNRLNIS-PRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITT 489

Query: 177  TTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTLNPDFRFHAK 7
             +FT+S+NG T GF +  +GLRQGDP+SP LF+L ME  S+L   R  +    +H K
Sbjct: 490  PSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPK 546


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  213 bits (542), Expect = 7e-53
 Identities = 101/237 (42%), Positives = 155/237 (65%)
 Frame = -1

Query: 717  EIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGLILRELNHTSITL 538
            EIK A  S+  +K  GPDG+   FF+  W +IG +V +A+ EFF  G +L++ N T++ L
Sbjct: 311  EIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVL 370

Query: 537  IPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAAFIKGRSITDNFF 358
            IPK S+  T+ +FRPI+C N +YK I+K+LT+R+  +L  +I  +Q+AF+ GRS+ +N  
Sbjct: 371  IPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVL 430

Query: 357  LAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHPCFIHWVMTCVTS 178
            LA E++  Y R  +S PR M+K+DL+KA+ S+ W+F+   L        +I+W+  C+T+
Sbjct: 431  LATEMVHGYNRLNIS-PRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITT 489

Query: 177  TTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTLNPDFRFHAK 7
             +FT+S+NG T GF +  +GLRQGDP+SP LF+L ME  S+L   R  +    +H K
Sbjct: 490  PSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPK 546


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  211 bits (536), Expect = 3e-52
 Identities = 97/226 (42%), Positives = 148/226 (65%)
 Frame = -1

Query: 729 IGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGLILRELNHT 550
           +  +EIK  LFS+ NDK+PGPDGF + FFK +W+++G +   A+  FF  G + + +N T
Sbjct: 6   VSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNST 65

Query: 549 SITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAAFIKGRSIT 370
            + LIPKK     + D+RPI+C NV+YK I+KIL NR+  +L + I   Q++F+K R + 
Sbjct: 66  ILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLI 125

Query: 369 DNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHPCFIHWVMT 190
           +N  LA +L++ Y +  +S  RC +KID+ KA  S+ W FL + L   +F   FIHW+  
Sbjct: 126 ENVLLATDLVKDYHKDSIS-ERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRL 184

Query: 189 CVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRL 52
           C+T+ +F++ +NG   GF +  RGLRQG  +SP LF++CM+ LS+L
Sbjct: 185 CITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKL 230


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  211 bits (536), Expect = 3e-52
 Identities = 100/250 (40%), Positives = 153/250 (61%)
 Frame = -1

Query: 753  DQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGL 574
            D+  +   +  +EI   +FS+ NDK+PGPDG+ A F+K  W++IG +   A+  FF KG 
Sbjct: 333  DKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGF 392

Query: 573  ILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAA 394
            + + +N T + LIPKK     + D+RPI+C NV+YK I+KI+ NR+  +L K I   Q+A
Sbjct: 393  LPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSA 452

Query: 393  FIKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHP 214
            F+K R + +N  LA E+++ Y +  +S  RC +KID+ KA+ S+ W FL +VL   NF P
Sbjct: 453  FVKDRLLIENVLLATEIVKDYHKDSVS-SRCALKIDISKAFDSVQWKFLINVLEAMNFPP 511

Query: 213  CFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTL 34
             F HW+  C+T+ +F++ +NG   G     R LRQG  +SP LF++ M+ LS++      
Sbjct: 512  EFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVG 571

Query: 33   NPDFRFHAKC 4
               F +H KC
Sbjct: 572  ARQFGYHPKC 581


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  210 bits (534), Expect = 6e-52
 Identities = 103/248 (41%), Positives = 157/248 (63%)
 Frame = -1

Query: 750  QSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGLI 571
            Q ++  P  +++IK+A FS+  +KA GPDGF   FF   W +IG +VT A+ EFFT G +
Sbjct: 337  QVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKL 396

Query: 570  LRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAAF 391
            L++ N T++ LIPK ++  ++ DFRPI+C N VYK I+K+LT+R+   L   I+ +Q+AF
Sbjct: 397  LKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAF 456

Query: 390  IKGRSITDNFFLAQELIRKYKRKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHPC 211
            + GR   +N  LA EL+  Y +K ++ P  M+K+DL+KA+ S+ WDF+   L   N    
Sbjct: 457  MPGRLFLENVLLATELVHGYNKKNIA-PSSMLKVDLRKAFDSVRWDFIVSALRALNVPEK 515

Query: 210  FIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTLN 31
            F  W++ C+++ +F++ +NG + G     +GLRQGDPMSP LF+L ME  S L   R  +
Sbjct: 516  FTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTS 575

Query: 30   PDFRFHAK 7
                +H K
Sbjct: 576  GYIAYHPK 583


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  208 bits (529), Expect = 2e-51
 Identities = 110/242 (45%), Positives = 147/242 (60%), Gaps = 2/242 (0%)
 Frame = -1

Query: 771  PLLNSLDQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSE 592
            P+++S     ++      EIK+ALFSI  DKAPGPDGF ASFF   WD+I  DV+  +  
Sbjct: 355  PIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRS 414

Query: 591  FFTKGLILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLI 412
            FF    +   LN T +TLIPK S    V D+RPIA  NV YK + KILT R+ P L +LI
Sbjct: 415  FFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELI 474

Query: 411  NPAQAAFIKGRSITDNFFLAQELIRKYKRKILSPPRC--MVKIDLQKAYGSISWDFLHDV 238
            +  Q+AF+ GR+I DN  +  E++  + R   +   C   +K D+ KAY  I W+FL +V
Sbjct: 475  SLHQSAFVPGRAIADNVLITHEILH-FLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEV 533

Query: 237  LIGFNFHPCFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLS 58
            L+   FH  +I WVM CV + +++  ING   G +   RGLRQGDP+SP LF+LC E LS
Sbjct: 534  LMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLS 593

Query: 57   RL 52
             L
Sbjct: 594  GL 595


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score =  207 bits (528), Expect = 3e-51
 Identities = 105/250 (42%), Positives = 150/250 (60%), Gaps = 1/250 (0%)
 Frame = -1

Query: 765 LNSLDQSTIVAPIGTKEIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFF 586
           + ++  S +       EI +A+  IG+DKAPGPDG  A F+K  WD++G+DV   V  FF
Sbjct: 37  VTNIINSELTQDFRDSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVKLFF 96

Query: 585 TKGLILRELNHTSITLIPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINP 406
               +   +NHT+I +IPK  +  T+ D+RPIA  NV+YK I+K + NR+   L  +++ 
Sbjct: 97  ESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSD 156

Query: 405 AQAAFIKGRSITDNFFLAQELIRKYK-RKILSPPRCMVKIDLQKAYGSISWDFLHDVLIG 229
           +QAAFI GR I DN  +A E++   K RK +S     VK D+ KAY  + WDFL   +  
Sbjct: 157 SQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRL 216

Query: 228 FNFHPCFIHWVMTCVTSTTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLF 49
           F F   +I W+M  V S  +++ ING  HG+I   RG+RQGDP+SP LF+LC + LS L 
Sbjct: 217 FGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLI 276

Query: 48  TVRTLNPDFR 19
            V+  + D R
Sbjct: 277 KVKASSGDIR 286


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score =  207 bits (527), Expect = 4e-51
 Identities = 106/234 (45%), Positives = 145/234 (61%), Gaps = 1/234 (0%)
 Frame = -1

Query: 717  EIKDALFSIGNDKAPGPDGFPASFFKMNWDLIGDDVTSAVSEFFTKGLILRELNHTSITL 538
            EI DA+  IG+DKAPGPDG  A F+K  WD++G DV   V +FF    +   +NHT+I +
Sbjct: 588  EIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICM 647

Query: 537  IPKKSHEPTVGDFRPIACTNVVYKTITKILTNRMAPILLKLINPAQAAFIKGRSITDNFF 358
            IPK ++  T+ D+RPIA  NV+YK I+K L NR+   L  +++ +QAAFI GR I DN  
Sbjct: 648  IPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVM 707

Query: 357  LAQELIRKYK-RKILSPPRCMVKIDLQKAYGSISWDFLHDVLIGFNFHPCFIHWVMTCVT 181
            +A E++   K RK +S     VK D+ KAY  + WDFL   +  F F   +I W+M  V 
Sbjct: 708  IAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVK 767

Query: 180  STTFTLSINGGTHGFIKGRRGLRQGDPMSPSLFLLCMEYLSRLFTVRTLNPDFR 19
            S  +++ ING  HG+I   RG+RQGDP+SP LF+LC + LS L   R  + D R
Sbjct: 768  SVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLR 821