BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00005098
         (4420 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   437   e-119
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   433   e-118
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       400   e-108
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   394   e-106
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   393   e-106
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   389   e-105
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   389   e-105
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   378   e-101
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              368   2e-98
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   358   1e-95
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694...   353   5e-94
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   352   1e-93
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   349   8e-93
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           349   8e-93
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   342   7e-91
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   323   4e-85
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               317   4e-83
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga...   313   4e-82
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   309   9e-81
ref|XP_007008704.1| Uncharacterized protein TCM_042330 [Theobrom...   304   2e-79

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  437 bits (1123), Expect = e-119
 Identities = 259/786 (32%), Positives = 402/786 (51%), Gaps = 6/786 (0%)
 Frame = +1

Query: 2074 MIIATWNIRGMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQGWNFMHN 2253
            M+  +WN+RGM    K   ++  +  HKI +  +LET               + W +++N
Sbjct: 1    MLCVSWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNN 60

Query: 2254 FDIVSNGRILLCWNSNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDM 2433
            +   +  RI + W    V+V +   ++Q++  ++  +   +       YG +TI DR  +
Sbjct: 61   YSHSARERIWIGWRPAWVNVTLTHTQEQLMVCDI--QDQSHKLKMVAVYGLHTIADRKSL 118

Query: 2434 WDSLILHVPLDAPAFVCGDFNCVQDPSERVGKRTPSEKELADFVDTSAFLTLQDAPSTGC 2613
            W  L+  V    P  + GDFN V   ++R+     ++ E  DF        L ++ ST  
Sbjct: 119  WSGLLQCVQQQDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESRSTWS 178

Query: 2614 FFTFA----GKD-VFSRIDRTLINTIWLENNWFCRTEFLPRGIISDHSACISTLFQHVQN 2778
            +++++    G+D V SRID+  +N +WL        ++LP GI SDHS  +  L      
Sbjct: 179  YYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGI-SDHSPLLFNLMTGRPQ 237

Query: 2779 FKKDFRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNI 2958
              K F+F N   E   F  ++++ W N+     K + +   L  ++  L+Q+        
Sbjct: 238  GGKPFKFMNVMAEQGEFLETVEKAW-NSVNGRFKLQAIWLNLKAVKRELKQMKTQKIGLA 296

Query: 2959 SEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINF 3138
             EK    R +L+  Q Q D D  N              +H    E + L Q+++   +  
Sbjct: 297  HEKVKNLRHQLQDLQSQDDFDH-NDIMQTDAKSIMNDLRHWSHIEDSILQQKSRITWLQQ 355

Query: 3139 SDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFG-KNTPRTPV 3315
             D ++K F + VK     N I  +  E+G    D   +  + +++Y  L G + +    V
Sbjct: 356  GDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTLMGV 415

Query: 3316 DWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXXX 3495
            D + +  G  LS+  + +LIR V+  EI  AL  IG+DKAPG DGF + FF         
Sbjct: 416  DLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQ 475

Query: 3496 XXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSRM 3675
               A + EFF+   + R +N  +V+L+PK  H   + +FRPIAC  V+YKII+K+LT+RM
Sbjct: 476  EIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRM 535

Query: 3676 SPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCISW 3855
               + ++++ AQS FI GR+I DN  LA ELIR Y RK  ++ RC++K+D+RKAYD + W
Sbjct: 536  KGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKH-MSPRCIMKVDIRKAYDSVEW 594

Query: 3856 DFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFLF 4035
             FL  +LY   F   F+ WI+ CV++ ++S+ +NG      + ++GLRQGDPMSP LF  
Sbjct: 595  SFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFAL 654

Query: 4036 CMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEFT 4215
            CMEYLSR +     +  F  HPKC   + THL FADDLL+F R D  S+  +  A  +F+
Sbjct: 655  CMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFS 714

Query: 4216 ATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSPL 4395
              SGL  +  KS+I+  GV     +E+ D      G LP +YLG+PL SK LT     PL
Sbjct: 715  HASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPL 774

Query: 4396 ISQISN 4413
            +  I+N
Sbjct: 775  VEMITN 780


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  433 bits (1114), Expect = e-118
 Identities = 260/786 (33%), Positives = 403/786 (51%), Gaps = 7/786 (0%)
 Frame = +1

Query: 2074 MIIATWNIRGMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQGWNFMHN 2253
            M I TWN+RG+    K   V+  +   KI +  + ET             F   W++++N
Sbjct: 1    MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINN 60

Query: 2254 FDIVSNGRILLCWNSNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDM 2433
            +     GRI + W +N V++N++SV +QVI   V      N F  A  YG +TI DR  +
Sbjct: 61   YACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVL 120

Query: 2434 WDSLILHVPL-DAPAFVCGDFNCVQDPSERVGKRTPSEKELADFVDTSAFLTLQDAPSTG 2610
            W+ L   V +   P  + GD+N V    +R+     SE E +D         L +AP+TG
Sbjct: 121  WEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTTG 180

Query: 2611 CFFTFAGKDV-----FSRIDRTLINTIWLENNWFCRTEFLPRGIISDHSACISTLFQHVQ 2775
             F+++  K +      SRID++ +N  W+        E+   GI SDHS  I  L     
Sbjct: 181  LFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGI-SDHSPLIFNLATQHD 239

Query: 2776 NFKKDFRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNN 2955
               + F+F N   +   F   +KE W +A  R  K + +  +L  ++  L+  +   F+ 
Sbjct: 240  EGGRPFKFLNFLADQNGFVEVVKEAWGSANHRF-KMKNIWVRLQAVKRALKSFHSKKFSK 298

Query: 2956 ISEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHIN 3135
               +    R +L A Q   +   ++           +  +   T +++ L Q+++ + ++
Sbjct: 299  AHCQVEELRRKLAAVQALPEVSQVSELQEEEKDLIAQ-LRKWSTIDESILKQKSRIQWLS 357

Query: 3136 FSDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGKNTPRTP- 3312
              D ++K+F + +K    RN I  ++ + G+   +   I  +  ++Y  L G ++ +   
Sbjct: 358  LGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEA 417

Query: 3313 VDWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXX 3492
            +D  V+  G +LS+   + L++P++  EI  AL DI D KAPG DGF S FF        
Sbjct: 418  IDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIK 477

Query: 3493 XXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSR 3672
                  + +FF  G + + +N T V+LIPK        D+RPIAC + +YKII+KILT R
Sbjct: 478  QEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKR 537

Query: 3673 MSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCIS 3852
            +   + +++  AQ+ FI  R+I DN  LA ELIR Y R+  ++ RC++K+D+RKAYD + 
Sbjct: 538  LQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRH-VSPRCVIKVDIRKAYDSVE 596

Query: 3853 WDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFL 4032
            W FL  +L  L F   FI WI+ CV + ++SI +NG        ++GLRQGDP+SP LF 
Sbjct: 597  WVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFA 656

Query: 4033 FCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEF 4212
              MEYLSR +        F  HPKC     THL FADDLL+F R D  S+  +  A + F
Sbjct: 657  LSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSF 716

Query: 4213 TATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSP 4392
            +  SGL  +  KS I+ GGV   E +++ D    P G+LP +YLG+PLASK L  +   P
Sbjct: 717  SKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKP 776

Query: 4393 LISQIS 4410
            LI +I+
Sbjct: 777  LIDKIT 782


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  400 bits (1029), Expect = e-108
 Identities = 248/786 (31%), Positives = 400/786 (50%), Gaps = 12/786 (1%)
 Frame = +1

Query: 2089 WNIRGMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQGWNFMHNFDIVS 2268
            WNIRG      ++  +  +  +K    G++ET              L GW+F+ N+    
Sbjct: 8    WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSD 67

Query: 2269 NGRILLCWNSNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDMWDSLI 2448
             G+I + W+ + V V +++   Q+I   V    S +    ++ Y    +  R ++W  ++
Sbjct: 68   LGKIWVMWDPS-VQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIEIV 126

Query: 2449 LHVPL----DAPAFVCGDFNCVQDPSERVGKRTPS-EKELADFVDTSAFLTLQDAPSTGC 2613
              V      D P  V GDFN V +P E     + + +  + DF D      L D    G 
Sbjct: 127  NMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKGN 186

Query: 2614 FFTFAGKD----VFSRIDRTLINTIWLENNWFCRTEFLPRGI-ISDHSACISTLFQHVQN 2778
             FT+  K     V  +IDR L+N  W  N  F  +  +   +  SDH +C   L +    
Sbjct: 187  TFTWWNKSHTTPVAKKIDRILVNDSW--NALFPSSLGIFGSLDFSDHVSCGVVLEETSIK 244

Query: 2779 FKKDFRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNI 2958
             K+ F+F N  +++  F N +++NW    V      ++S KL  L+  ++  +R +++ +
Sbjct: 245  AKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSEL 304

Query: 2959 SEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINF 3138
             ++   A   L   Q ++  DP             +K   L  +E++F  Q+++      
Sbjct: 305  EKRTKEAHDFLIGCQDRTLADP-TPINASFELEAERKWHILTAAEESFFRQKSRISWFAE 363

Query: 3139 SDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGKNTPRTPVD 3318
             D +TKYFH +       N+IS +   NG+     + I+     Y+  L G       ++
Sbjct: 364  GDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYLME 423

Query: 3319 WSVMGA--GFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXX 3492
             + M     +R S      L    S+ +IR ALF +  +K+ GPDGFT+ FF        
Sbjct: 424  QNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVG 483

Query: 3493 XXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSR 3672
                 ++ EFFS G +L++ N T + LIPK  +    SDFRPI+C N +YK+I ++LT R
Sbjct: 484  AEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDR 543

Query: 3673 MSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCIS 3852
            +   L  +IS AQSAF+ GR++ +N  LA +L+  Y   S I+ R M+K+DL+KA+D + 
Sbjct: 544  LQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNW-SNISPRGMLKVDLKKAFDSVR 602

Query: 3853 WDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFL 4032
            W+F+   L  L     FI WI  C+++ TF+++INGG+ GF +  +GLRQGDP+SP LF+
Sbjct: 603  WEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFV 662

Query: 4033 FCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEF 4212
              ME  S L+H+R  +    +HPK ++   +HL FADD+++F  G   S+  + + LD+F
Sbjct: 663  LAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDF 722

Query: 4213 TATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSP 4392
             + SGL VNK KSH++L G+   E       +GFP GTLP++YLGLPL ++ L   +Y P
Sbjct: 723  ASWSGLKVNKDKSHLYLAGLNQLESNANA-AYGFPIGTLPIRYLGLPLMNRKLRIAEYEP 781

Query: 4393 LISQIS 4410
            L+ +I+
Sbjct: 782  LLEKIT 787


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  394 bits (1013), Expect = e-106
 Identities = 238/791 (30%), Positives = 383/791 (48%), Gaps = 16/791 (2%)
 Frame = +1

Query: 2086 TWNIRGMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQGWNFMHNFDIV 2265
            +WN+RG   + ++   R      K     ILET            +   GW  + N++  
Sbjct: 6    SWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFA 65

Query: 2266 SNGRILLCWNSNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDMWDSL 2445
            + GRI + W+   V+V ++S   Q I   V        F     Y       R  +W  L
Sbjct: 66   ALGRIWVVWDP-AVEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSEL 124

Query: 2446 IL----HVPLDAPAFVCGDFNCVQDPSERVGKRTPSEKELADFVDTSAFLTLQDAPSTGC 2613
             L        D P  + GDFN   DP +     +   + + +F +      + D P  G 
Sbjct: 125  ELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFRGN 184

Query: 2614 FFTF----AGKDVFSRIDRTLINTIWL-----ENNWFCRTEFLPRGIISDHSACISTLFQ 2766
             +T+        +  +IDR L+N  WL         FC  EF      SDH      +  
Sbjct: 185  HYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEF------SDHCPSCVNISN 238

Query: 2767 HVQNFKKDFRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTH 2946
                  K F+  N  M HP F   ++  W     +      LS K   L+  +R  NR H
Sbjct: 239  QSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREH 298

Query: 2947 FNNISEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTK 3126
            ++ + ++   A   L+  Q      P +           +    L  +E+ FL Q+++  
Sbjct: 299  YSGLEKRVVQAAQNLKTCQNNLLAAP-SSYLAGLEKEAHRSWAELALAEERFLCQKSRVL 357

Query: 3127 HINFSDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGKNTPR 3306
             +   D +T +FH ++      N I ++  + G    +   +    +D++ +LFG ++  
Sbjct: 358  WLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHL 417

Query: 3307 TPVDW-SVMGAGFRLSSDDQSA--LIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXX 3477
               +  S + +  R   D+ +   L   VS  +I++  F +  +K+PGPDG+TS FF   
Sbjct: 418  ISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKT 477

Query: 3478 XXXXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITK 3657
                     A+V EFF  G +L + N T V+++PK  +   I++FRPI+C N +YK+I+K
Sbjct: 478  WSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISK 537

Query: 3658 ILTSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKA 3837
            +L  R+   L   ISP+QSAF+KGR + +N  LA EL++ + + + I++R ++K+DLRKA
Sbjct: 538  LLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQ-ANISSRGVLKVDLRKA 596

Query: 3838 YDCISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMS 4017
            +D + W F+ + L   N  P F+ WI  C+TS +FSI ++G   G+ +G +GLRQGDP+S
Sbjct: 597  FDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLS 656

Query: 4018 PTLFLFCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRD 4197
            P+LF+  ME LSRL+  +    +  +HPK +    + LAFADDL++F  G   S+R ++ 
Sbjct: 657  PSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKS 716

Query: 4198 ALDEFTATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTT 4377
             L+ F   SGL +N  KS ++  G+   +K++ L  FGF  GT P +YLGLPL  + L  
Sbjct: 717  VLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTL-AFGFVNGTFPFRYLGLPLLHRKLRR 775

Query: 4378 NDYSPLISQIS 4410
            +DYS LI +I+
Sbjct: 776  SDYSQLIDKIA 786


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  393 bits (1010), Expect = e-106
 Identities = 254/796 (31%), Positives = 392/796 (49%), Gaps = 23/796 (2%)
 Frame = +1

Query: 2089 WNIRGMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQGWNFMHNFDIVS 2268
            WN+RG+ ++ K + ++  I ++      ++ET               + W+ + N++   
Sbjct: 6    WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 2269 NGRILLCWNSNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDMWDSLI 2448
             GRI + W  N V ++ I    Q++  +V      + F  +  Y    +E+R  +W  L 
Sbjct: 66   RGRIWVLWRKN-VRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124

Query: 2449 LH----VPLDAPAFVCGDFNCVQDPSERVGKR-----TPSEKELADFVDTSAFLTLQDAP 2601
             H    +    P  + GDFN   D +E          TP    + DF     + +L D  
Sbjct: 125  DHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPG---MRDFQQVINYCSLTDMA 181

Query: 2602 STGCFFTFAGKD----VFSRIDRTLINTIWLENNWFCRT-EFLPRGIISDHSACISTLFQ 2766
            + G  FT+  K     +  ++DR LIN  W  N  F ++      G  SDH  C  +L  
Sbjct: 182  AQGPLFTWCNKREHGLIMKKLDRVLINDCW--NQTFSQSYSVFEAGGCSDHLRCRISLNS 239

Query: 2767 HVQNFK---KDFRFCNAWMEHPSFQNSLKENWVNAP---VREGKQEQLSAKLHRLRPILR 2928
               N     K F+F NA  +   F+  +   W +     +      + S  L  L+P +R
Sbjct: 240  EAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIR 299

Query: 2929 QLNRTHFNNISEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLA 3108
             + R    N+S+KA  A   L A Q  +  +P +            +   +   E+ +L 
Sbjct: 300  SMARDRLGNLSKKANEAYKILCAKQHVNLTNP-SSMAMEEENAAYSRWDRVAILEEKYLK 358

Query: 3109 QRAKTKHINFSDKSTKYFHSLVKRNMIRNTISFIRRENG--ETTGD-VQTIIADFIDYYS 3279
            Q++K       D++TK FH         NTI  I   +G  +T GD ++     F   + 
Sbjct: 359  QKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFL 418

Query: 3280 DLFGKNTPRTPVDWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTS 3459
             L   +     +         R S  DQ +LIRPV+  EIR  LF +  DK+PGPDG+TS
Sbjct: 419  QLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTS 478

Query: 3460 AFFXXXXXXXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVV 3639
             FF             +V  FF+KG + + +N TI++LIPK T    + D+RPI+C NV+
Sbjct: 479  EFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVL 538

Query: 3640 YKIITKILTSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVK 3819
            YK+I+KI+ +R+   L K I+  QSAF+K R +++N  LA EL++ Y  K  I+ RC +K
Sbjct: 539  YKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYH-KDTISTRCAIK 597

Query: 3820 IDLRKAYDCISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLR 3999
            ID+ KA+D + W FL +V   L F   FI+WI  C+T+A+FS+ +NG   G+ +  RGLR
Sbjct: 598  IDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLR 657

Query: 4000 QGDPMSPTLFLFCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPES 4179
            QG  +SP LF+ CM+ LS+++     A  F +HPKC +   THL+FADDL++   G   S
Sbjct: 658  QGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRS 717

Query: 4180 MRVLRDALDEFTATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLA 4359
            +  +    DEF   SGL ++  KS ++L G+    + E+ D F F  G LPV+YLGLPL 
Sbjct: 718  IERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLI 777

Query: 4360 SKSLTTNDYSPLISQI 4407
            +K L+T D  PL+ Q+
Sbjct: 778  TKRLSTTDCLPLLEQV 793


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  389 bits (999), Expect = e-105
 Identities = 247/784 (31%), Positives = 400/784 (51%), Gaps = 18/784 (2%)
 Frame = +1

Query: 2089 WNIRGMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQGWNFMHNFDIVS 2268
            WN+RG   +  +   +     +K    G++ET              L GW+F+ N++   
Sbjct: 8    WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67

Query: 2269 NGRILLCWNSNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDMWDSLI 2448
             G+I + W+ + V V +I    Q+I   +    S + F  ++ Y       R ++W+ L+
Sbjct: 68   LGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNELV 126

Query: 2449 L----HVPLDAPAFVCGDFNCVQDPSERVGKRTPSEKELADFVDTSAFLTLQDAPSTGCF 2616
                  V +     V GDFN + +P   +       +++  F        L D    G  
Sbjct: 127  QLALSPVVVGRSWIVLGDFNQILNPESAINANIG--RKIRAFRSCLLDSDLYDLVYKGSS 184

Query: 2617 FTF----AGKDVFSRIDRTLINTIWLENNWFCRTEFLPRGI--ISDHSACISTLFQHVQN 2778
            +T+    + + +  +IDR L+N  W   N    + +   G    SDHS+C   L   V  
Sbjct: 185  YTWWNKCSSRPLAKKIDRILVNDHW---NTLFPSAYANFGEPDFSDHSSCEVVLDPAVLK 241

Query: 2779 FKKDFRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNI 2958
             K+ FRF N ++ +P F   ++ENW +  V      ++S KL  L+  +   +R ++++I
Sbjct: 242  AKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDI 301

Query: 2959 SEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINF 3138
             ++ + A A +   QR +  +P +           +K Q L  +E++F  Q++    +  
Sbjct: 302  EKRVSEAHAIVLHRQRITLTNP-SVVHATLELEATRKWQILAKAEESFFCQKSSISWLYE 360

Query: 3139 SDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLF--------GK 3294
             D +T YFH +       NTI+F+  + GE     Q I     ++  + F        G+
Sbjct: 361  GDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGE 420

Query: 3295 NTPRTPVDWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXX 3474
            N+     D +++   FR S D  + L R  S ++I+ A F +  +KA GPDG++S FF  
Sbjct: 421  NS-LAQSDMNLL-LSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKG 478

Query: 3475 XXXXXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIIT 3654
                       +V EFF  G +L++ N T + LIPK T+   ++DFRPI+C N +YK+I 
Sbjct: 479  VWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIA 538

Query: 3655 KILTSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRK 3834
            K+LTSR+   L ++ISP+QSAF+ GR + +N  LA E++  Y  K+ I++R M+K+DLRK
Sbjct: 539  KLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKN-ISSRGMLKVDLRK 597

Query: 3835 AYDCISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPM 4014
            A+D + WDF+      L     F+ WI  C+++  FS+ +NG S GF +  +GLRQGDP+
Sbjct: 598  AFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPL 657

Query: 4015 SPTLFLFCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLR 4194
            SP LF+  ME  S L+ AR  A    +HPK      +HL FADD+++F  G   S+  + 
Sbjct: 658  SPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGIS 717

Query: 4195 DALDEFTATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLT 4374
            +ALD+F + SGL VNK K++++L G    E   I   +GFP  TLP++YLGLPL S+ L 
Sbjct: 718  EALDDFASWSGLHVNKDKTNLYLAGTDEVEALAI-SHYGFPISTLPIRYLGLPLMSRKLK 776

Query: 4375 TNDY 4386
             ++Y
Sbjct: 777  ISEY 780


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  389 bits (998), Expect = e-105
 Identities = 247/784 (31%), Positives = 400/784 (51%), Gaps = 18/784 (2%)
 Frame = +1

Query: 2089 WNIRGMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQGWNFMHNFDIVS 2268
            WN+RG   +  +   +     +K    G++ET              L GW+F+ N++   
Sbjct: 8    WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67

Query: 2269 NGRILLCWNSNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDMWDSLI 2448
             G+I + W+ + V V +I    Q+I   +    S + F  ++ Y       R ++W+ L+
Sbjct: 68   LGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNELV 126

Query: 2449 L----HVPLDAPAFVCGDFNCVQDPSERVGKRTPSEKELADFVDTSAFLTLQDAPSTGCF 2616
                  V +     V GDFN + +P   +       +++  F        L D    G  
Sbjct: 127  QLALSPVVVGRSWIVLGDFNQILNPESAINANIG--RKIRAFRSCLLDSDLYDLVYKGSS 184

Query: 2617 FTF----AGKDVFSRIDRTLINTIWLENNWFCRTEFLPRGI--ISDHSACISTLFQHVQN 2778
            +T+    + + +  +IDR L+N  W   N    + +   G    SDHS+C   L   V  
Sbjct: 185  YTWWNKCSSRPLAKKIDRILVNDHW---NTLFPSAYANFGEPDFSDHSSCEVVLDPAVLK 241

Query: 2779 FKKDFRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNI 2958
             K+ FRF N ++ +P F   ++ENW +  V      ++S KL  L+  +   +R ++++I
Sbjct: 242  AKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDI 301

Query: 2959 SEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINF 3138
             ++ + A A +   QR +  +P +           +K Q L  +E++F  Q++    +  
Sbjct: 302  EKRVSEAHAIVLHRQRITLTNP-SVVHATLELEATRKWQILAKAEESFFCQKSSISWLYE 360

Query: 3139 SDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLF--------GK 3294
             D +T YFH +       NTI+F+  + GE     Q I     ++  + F        G+
Sbjct: 361  GDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGE 420

Query: 3295 NTPRTPVDWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXX 3474
            N+     D +++   FR S D  + L R  S ++I+ A F +  +KA GPDG++S FF  
Sbjct: 421  NS-LAQSDMNLL-LSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKG 478

Query: 3475 XXXXXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIIT 3654
                       +V EFF  G +L++ N T + LIPK T+   ++DFRPI+C N +YK+I 
Sbjct: 479  VWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIA 538

Query: 3655 KILTSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRK 3834
            K+LTSR+   L ++ISP+QSAF+ GR + +N  LA E++  Y  K+ I++R M+K+DLRK
Sbjct: 539  KLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKN-ISSRGMLKVDLRK 597

Query: 3835 AYDCISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPM 4014
            A+D + WDF+      L     F+ WI  C+++  FS+ +NG S GF +  +GLRQGDP+
Sbjct: 598  AFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPL 657

Query: 4015 SPTLFLFCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLR 4194
            SP LF+  ME  S L+ AR  A    +HPK      +HL FADD+++F  G   S+  + 
Sbjct: 658  SPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGIS 717

Query: 4195 DALDEFTATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLT 4374
            +ALD+F + SGL VNK K++++L G    E   I   +GFP  TLP++YLGLPL S+ L 
Sbjct: 718  EALDDFASWSGLHVNKDKTNLYLAGTDEVEALAI-SHYGFPISTLPIRYLGLPLMSRKLK 776

Query: 4375 TNDY 4386
             ++Y
Sbjct: 777  ISEY 780


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  378 bits (970), Expect = e-101
 Identities = 244/793 (30%), Positives = 384/793 (48%), Gaps = 13/793 (1%)
 Frame = +1

Query: 2074 MIIATWNIRGMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQGWNFMHN 2253
            M +  WNIRG+    ++  VR+ I  + + +   LET            + L GW    N
Sbjct: 1    MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSN 60

Query: 2254 FDIVSNGRILLCWNSNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDM 2433
            +     GRI + W+ + + V +     Q++  ++       +F  A  YG  +  DR  +
Sbjct: 61   YCCSELGRIWIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSL 119

Query: 2434 WDSLIL---HVPLDA-PAFVCGDFNCVQDPSER--VGKRTPSEKELADFVDTSAFLTLQD 2595
            W+ +++     PL   P  + GDFN +   SE   + +   + + + D         L D
Sbjct: 120  WEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSD 179

Query: 2596 APSTGCFFTFAGKD----VFSRIDRTLINTIWLENNWFCRTEFLPRGIISDHSACISTLF 2763
             PS G FFT++       +  ++DR L N  W          F P G  SDH+ CI  + 
Sbjct: 180  LPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILID 238

Query: 2764 QHVQNFKKDFRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRT 2943
                  KK F++ +    HPS+  +L   W    +       L   L   +   R LNR 
Sbjct: 239  NQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCCRTLNRL 298

Query: 2944 HFNNISEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKT 3123
             F+NI ++   +   LE  Q +    P +           K+      + ++F  Q+++ 
Sbjct: 299  RFSNIQQRTAQSLTRLEDIQVELLTSP-SDTLFRREHVARKQWIFFAAALESFFRQKSRI 357

Query: 3124 KHINFSDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFG---K 3294
            + ++  D +T++FH  V  +   N I F+R ++G    +V  I    I YYS L G   +
Sbjct: 358  RWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSE 417

Query: 3295 NTPRTPVDWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXX 3474
            N     V+       FR  S   S L    S  EI   LF +  +KAPGPDGF   FF  
Sbjct: 418  NVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIE 477

Query: 3475 XXXXXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIIT 3654
                      A++ EFF  G + R  N T ++LIPK T    ++ FRP+AC   +YK+IT
Sbjct: 478  AWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVIT 537

Query: 3655 KILTSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRK 3834
            +I++ R+  F+ + +   Q  FIKGR + +N  LA EL+  +E   G T R  +++D+ K
Sbjct: 538  RIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEA-DGETTRGCLQVDISK 596

Query: 3835 AYDCISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPM 4014
            AYD ++W+FL ++L  L+    FI+WI  C++SA++SI  NG   GF +GK+G+RQGDPM
Sbjct: 597  AYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPM 656

Query: 4015 SPTLFLFCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLR 4194
            S  LF+  M+ LS+ +        F  HP C +   THL+FADD+L+F  G   S+  + 
Sbjct: 657  SSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGIL 716

Query: 4195 DALDEFTATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLT 4374
              LD+F   SGL +N+ K+ + L G      + + D  G   G+LPV+YLG+PL S+ + 
Sbjct: 717  TILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMR 776

Query: 4375 TNDYSPLISQISN 4413
              DY PL+ +I++
Sbjct: 777  RQDYQPLVDRINS 789


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  368 bits (944), Expect = 2e-98
 Identities = 239/784 (30%), Positives = 378/784 (48%), Gaps = 13/784 (1%)
 Frame = +1

Query: 2101 GMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQGWNFMHNFDIVSNGRI 2280
            G+    ++  VR+ I  + + +   LET            + L GW    N+     GRI
Sbjct: 53   GLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSELGRI 112

Query: 2281 LLCWNSNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDMWDSLIL--- 2451
             + W+ + + V +     Q++  ++       +F  A  YG  +  DR  +W+ +++   
Sbjct: 113  WIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDILVLSR 171

Query: 2452 HVPLDA-PAFVCGDFNCVQDPSER--VGKRTPSEKELADFVDTSAFLTLQDAPSTGCFFT 2622
              PL   P  + GDFN +   SE   + +   + + + D         L D PS G FFT
Sbjct: 172  TSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVFFT 231

Query: 2623 FAGKD----VFSRIDRTLINTIWLENNWFCRTEFLPRGIISDHSACISTLFQHVQNFKKD 2790
            ++       +  ++DR L N  W          F P G  SDH+ CI  +       KK 
Sbjct: 232  WSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILIDNQPPPSKKS 290

Query: 2791 FRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNISEKA 2970
            F++ +    HPS+  +L   W    +       L   L   +   R LNR  F+NI ++ 
Sbjct: 291  FKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRT 350

Query: 2971 TVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINFSDKS 3150
              +   LE  Q +    P +           K+      + ++F  Q+++ + ++  D +
Sbjct: 351  AQSLTRLEDIQVELLTSP-SDTLFRREHVARKQWIFFAAALESFFRQKSRIRWLHEGDAN 409

Query: 3151 TKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFG---KNTPRTPVDW 3321
            T++FH  V  +   N I F+R ++G    +V  I    I YYS L G   +N     V+ 
Sbjct: 410  TRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSENVTPFSVEK 469

Query: 3322 SVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXXXXX 3501
                  FR  S   S L    S  EI   LF +  +KAPGPDGF   FF           
Sbjct: 470  IKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSV 529

Query: 3502 XASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSRMSP 3681
             A++ EFF  G + R  N T ++LIPK T    ++ FRP+AC   +YK+IT+I++ R+  
Sbjct: 530  VAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKL 589

Query: 3682 FLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCISWDF 3861
            F+ + +   Q  FIKGR + +N  LA EL+  +E   G T R  +++D+ KAYD ++W+F
Sbjct: 590  FIDQAVQANQVGFIKGRLLCENVLLASELVDNFEA-DGETTRGCLQVDISKAYDNVNWEF 648

Query: 3862 LRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFLFCM 4041
            L ++L  L+    FI+WI  C++SA++SI  NG   GF +GK+G+RQGDPMS  LF+  M
Sbjct: 649  LINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVM 708

Query: 4042 EYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEFTAT 4221
            + LS+ +        F  HP C +   THL+FADD+L+F  G   S+  +   LD+F   
Sbjct: 709  DVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQG 768

Query: 4222 SGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSPLIS 4401
            SGL +N+ K+ + L G      + + D  G   G+LPV+YLG+PL S+ +   DY PL+ 
Sbjct: 769  SGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVD 828

Query: 4402 QISN 4413
            +I++
Sbjct: 829  RINS 832


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  358 bits (920), Expect = 1e-95
 Identities = 219/662 (33%), Positives = 341/662 (51%), Gaps = 12/662 (1%)
 Frame = +1

Query: 2461 LDAPAFVCGDFNCVQDPSER-VGKRTPSEKELADFVDTSAFLTLQDAPSTGCFFTFAGK- 2634
            +D P  V GDFN +  PSE         ++    F +T    +L D    G  FT+  K 
Sbjct: 32   IDKPWTVLGDFNQILHPSEHSTSDGFNVDRPTRIFRETILLASLTDLSFRGNTFTWWNKR 91

Query: 2635 ---DVFSRIDRTLINTIWLEN-----NWFCRTEFLPRGIISDHSACISTLFQHVQNFKKD 2790
                V  ++DR L+N  W          F   +F      SDHS+C  +L       KK 
Sbjct: 92   SRAPVAKKLDRILVNDKWTTTFPSSLGLFGEPDF------SDHSSCELSLMSASPRSKKP 145

Query: 2791 FRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNISEKA 2970
            FRF N  ++  +F + +   W +  V      ++S KL  L+ ++R  +R ++++I ++ 
Sbjct: 146  FRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEKRT 205

Query: 2971 TVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINFSDKS 3150
              A   L  AQ      P             +K + L  +E +F  QR++   +   D +
Sbjct: 206  KEAHDALLLAQSVLLASPC-PSNAAIEAETQRKWRILAEAEASFFYQRSRVNWLREGDMN 264

Query: 3151 TKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGKNTPRTPVDWSVM 3330
            + YFH +       N I F+    G+     Q +    ++Y+    G        + + +
Sbjct: 265  SSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQGLPLFEQADI 324

Query: 3331 G--AGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXXXXXX 3504
                 +R S   Q +L  P S  +I+NA F +  +KA GPDGF+  FF            
Sbjct: 325  SNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVT 384

Query: 3505 ASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSRMSPF 3684
             ++ EFF+ G +L++ N T + LIPK T+   +SDFRPI+C N VYK+I+K+LT R+  F
Sbjct: 385  EAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDF 444

Query: 3685 LQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCISWDFL 3864
            L   IS +QSAF+ GR  ++N  LA EL+  Y +K+ I    M+K+DLRKA+D + WDF+
Sbjct: 445  LPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKN-IAPSSMLKVDLRKAFDSVRWDFI 503

Query: 3865 RDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFLFCME 4044
               L  LN    F  WIL C+++A+FS+ +NG S G     +GLRQGDPMSP LF+  ME
Sbjct: 504  VSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAME 563

Query: 4045 YLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEFTATS 4224
              S L+ +R  +    +HPK +  + +HL FADD+++F  G   S+  + ++L++F   S
Sbjct: 564  VFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWS 623

Query: 4225 GLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSPLISQ 4404
            GL +N +K+ ++  G+   E   +   +GF  G+LPV+YLGLPL S+ LT  +Y+PLI +
Sbjct: 624  GLLMNTNKTQLYHAGLSQSESDSMAS-YGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEK 682

Query: 4405 IS 4410
            I+
Sbjct: 683  IT 684


>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
            putative protein [Arabidopsis thaliana]
          Length = 1141

 Score =  353 bits (905), Expect = 5e-94
 Identities = 240/771 (31%), Positives = 384/771 (49%), Gaps = 26/771 (3%)
 Frame = +1

Query: 2170 GILETXXXXXXXXXXXPTFLQGWNFMHNFDIVSNGRILLCWNSNTVDVNIISVEKQVIHA 2349
            G++E               L GW F  N+     G+I + W+ + V+V I++   Q+I  
Sbjct: 27   GVIEKHVKQPKDKKFINALLPGWFFDENYGFSDLGKIWVLWDPS-VEVVIVAKSLQMITC 85

Query: 2350 NVTCRISGNNFHYALCYGFYTIEDRMDMWDSLIL----HVPLDAPAFVCGDFNCVQDPSE 2517
             V    S      ++ Y     + R ++W  +       V  + P  + GDFN V  P E
Sbjct: 86   EVLFPNSRTWIVISVVYAANEDDKRKELWREITALVASPVTFNRPWILLGDFNQVLHPHE 145

Query: 2518 RVGKRTPS-EKELADFVDTSAFLTLQDAPSTGCFFTFAGKD----VFSRIDRTLINTIWL 2682
                 + + ++ + DF +      L D    G  FT+  K     V  +IDR L+N  W 
Sbjct: 146  HSRHVSLNVDRRIRDFRECLLDAELSDLVYKGSSFTWWNKSKTRPVAKKIDRILVNESW- 204

Query: 2683 ENNWFCRTE--FLPRGIISDHSACISTLFQHVQNFKKDFRFCNAWMEHPSFQNSLKENWV 2856
             +N F  +   F P    SDH++C   L       K+ F+F N  +++P F N + + W 
Sbjct: 205  -SNLFPSSFGLFGPPDF-SDHASCGVVLELDPIKAKRPFKFFNFLLKNPEFLNLVWDVWY 262

Query: 2857 NAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNISEKATVARAELEAAQRQSDRDPLNXX 3036
            +  V      ++S KL  L+  ++  +R +++N+ ++   A   L + Q  +  +P +  
Sbjct: 263  STNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKRTEEAHETLLSFQNLTLDNP-SLE 321

Query: 3037 XXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINFSDKSTKYFHSLVKRNMIRNTISFIRR 3216
                     +K Q L T+E++F  QR++       D +T+YFH +       NTI+ +  
Sbjct: 322  NAAHELEAQRKWQILATAEESFFRQRSRVTWFAEGDGNTRYFHRMADSRKSVNTITTLVD 381

Query: 3217 ENGETTGDVQTIIADFIDYYSD--LFGKNTPRTPVDWSVMGAGFRLSSDDQSALIR---P 3381
            ++G T  D Q  IAD    Y +  L   N P            + L  DD + L+    P
Sbjct: 382  DSG-TQIDSQQGIADHCALYFENLLSDDNDP------------YSLEQDDMNLLLTYRCP 428

Query: 3382 VSHI----------EIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXXXXXXASVDEFFSK 3531
             S +          +I+ A F +  +KA GPDGF                 A+V EFF  
Sbjct: 429  YSQVADLEAMFSDEDIKAAFFGLPSNKACGPDGFPVT--------------AAVREFFIS 474

Query: 3532 GIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSRMSPFLQKLISPAQ 3711
            G +L++ N T + LIPK  +    SDFRPI+C N +YK+I ++LT R+   L  +ISP+Q
Sbjct: 475  GNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRLQKLLSCVISPSQ 534

Query: 3712 SAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCISWDFLRDVLYGLNF 3891
            SAF+ GR + +N  LA E++  Y  ++ I+ R M+K+DLRKA+D + W+F+   L  L  
Sbjct: 535  SAFLPGRLLAENVLLATEMVHGYNWRN-ISLRGMLKVDLRKAFDSVRWEFIIAALLALGV 593

Query: 3892 HPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFLFCMEYLSRLIHAR 4071
               FI WI  C+++ TF++++NG   GF +  +GLRQGDP+SP LF+  ME  S+L+++R
Sbjct: 594  PTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFVLAMEVFSKLLNSR 653

Query: 4072 THASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEFTATSGLTVNKSKS 4251
              +    +HPK +    +HL FADD+++F  G   S+  + + L++F + SGL VN  KS
Sbjct: 654  FDSGYIRYHPKASDLSISHLMFADDVMIFFDGGSSSLHGICETLEDFASWSGLKVNNDKS 713

Query: 4252 HIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSPLISQ 4404
            H F  G+   E+   L  +GFP+G LP++YLGLPL  + L   +Y PL+ +
Sbjct: 714  HFFCAGLEQAERNS-LAAYGFPQGCLPIRYLGLPLMCRKLRIAEYEPLLEK 763


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  352 bits (902), Expect = 1e-93
 Identities = 222/685 (32%), Positives = 347/685 (50%), Gaps = 20/685 (2%)
 Frame = +1

Query: 2413 IEDRMDMWDSLILH----VPLDAPAFVCGDFNCVQDPSERVGKRTP--SEKELADFVDTS 2574
            +E+R ++W+ L  H    +    P  + GDFN + D  E    R    +   + DF    
Sbjct: 1    MEERKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAV 60

Query: 2575 AFLTLQDAPSTGCFFTFAGKD----VFSRIDRTLINTIWLENNWFCRT-EFLPRGIISDH 2739
               ++ D    G  FT++ K     +  ++DR L+N +WL++  F R+      G  SDH
Sbjct: 61   NHCSITDLAYHGPLFTWSNKRENDLIAKKLDRVLVNDVWLQS--FPRSYSVFEAGGCSDH 118

Query: 2740 SACISTL---FQHVQNFKKDFRFCNAWMEHPSFQNSLKENWVNAP---VREGKQEQLSAK 2901
              C   L      V   K+ F+F N   E   F  +++  W       +      + S K
Sbjct: 119  LRCRINLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKK 178

Query: 2902 LHRLRPILRQLNRTHFNNISEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHL 3081
            L  L+P+LR L +    N+ ++   A   L   Q     +P +            K  H+
Sbjct: 179  LKGLKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANP-SPSSMQEENEAYAKWDHI 237

Query: 3082 DTSEKNFLAQRAKTKHINFSDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIAD 3261
               E+ FL QR+K   ++  D++ K FH  V     +N+I  I   +G      + I  +
Sbjct: 238  AVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTE 297

Query: 3262 FIDYYSD---LFGKNTPRTPVDWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDK 3432
               ++ +   L   +     V+       +R S  D+  L   VS  EI   +F + +DK
Sbjct: 298  AEHHFREFLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDK 357

Query: 3433 APGPDGFTSAFFXXXXXXXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDF 3612
            +PGPDG+T+ F+             ++  FF+KG + + +N TI++LIPK      + D+
Sbjct: 358  SPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDY 417

Query: 3613 RPIACTNVVYKIITKILTSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKS 3792
            RPI+C NV+YK+I+KI+ +R+   L K I   QSAF+K R +++N  LA E+++ Y + S
Sbjct: 418  RPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDS 477

Query: 3793 GITARCMVKIDLRKAYDCISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHG 3972
             +++RC +KID+ KA+D + W FL +VL  +NF P F +WI  C+T+A+FS+ +NG   G
Sbjct: 478  -VSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAG 536

Query: 3973 FVRGKRGLRQGDPMSPTLFLFCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLL 4152
                 R LRQG  +SP LF+  M+ LS+++     A  F +HPKC +   THL+FADDL+
Sbjct: 537  VFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLM 596

Query: 4153 LFGRGDPESMRVLRDALDEFTATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLP 4332
            +   G   S+  +   L EF   SGL ++  KS ++L GV+    QEI+  F F  G LP
Sbjct: 597  ILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLP 656

Query: 4333 VKYLGLPLASKSLTTNDYSPLISQI 4407
            V+YLGLPL SK LT +D  PLI Q+
Sbjct: 657  VRYLGLPLVSKRLTASDCLPLIEQL 681


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  349 bits (895), Expect = 8e-93
 Identities = 214/656 (32%), Positives = 339/656 (51%), Gaps = 14/656 (2%)
 Frame = +1

Query: 2485 GDFNCVQDPSERVGKRTPS---EKELADFVDTSAFLTLQDAPSTGCFFTFAGKD----VF 2643
            GDFN V  P E      PS   ++ + DF    + + L D    G  FT+  K     + 
Sbjct: 3    GDFNQVLLPQEH--SNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 2644 SRIDRTLINTIWLE-----NNWFCRTEFLPRGIISDHSACISTLFQHVQNFKKDFRFCNA 2808
             ++DR L N  W       +  F   +F      SDH +C   L  +  + K+ F+F N 
Sbjct: 61   KKLDRILANDSWCNLYPSSHGLFGNLDF------SDHVSCGVVLEANGISAKRPFKFFNF 114

Query: 2809 WMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNISEKATVARAE 2988
             +++  F N + +NW +  V      ++S KL  ++  ++  +R +++ I  +   A   
Sbjct: 115  LLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHEL 174

Query: 2989 LEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINFSDKSTKYFHS 3168
            L   Q  +  +P +           +K   L  +E++F  QR++       D +T YFH 
Sbjct: 175  LITCQNLTLANP-SVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHR 233

Query: 3169 LVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGKNTPRTPVDWSVMGA--GF 3342
            +V      NTI+ +   NG      Q I+   + YY  L G       ++   M     +
Sbjct: 234  MVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTY 293

Query: 3343 RLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXXXXXXASVDEF 3522
            R S D  S L +  +  EI+ A   +  +K  GPDG++  FF            A++ EF
Sbjct: 294  RCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEF 353

Query: 3523 FSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSRMSPFLQKLIS 3702
            F  G +L++ N T + LIPKT++   IS+FRPI+C N +YK+I+K+LTSR+   L  +I 
Sbjct: 354  FDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIG 413

Query: 3703 PAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCISWDFLRDVLYG 3882
             +QSAF+ GR++ +N  LA E++  Y R + I+ R M+K+DL+KA+D + W+F+   L  
Sbjct: 414  HSQSAFLPGRSLAENVLLATEMVHGYNRLN-ISPRGMLKVDLKKAFDSVKWEFVTAALRA 472

Query: 3883 LNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFLFCMEYLSRLI 4062
            L     +I WI  C+T+ +F+I++NG + GF R  +GLRQGDP+SP LF+  ME  S+L+
Sbjct: 473  LAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLL 532

Query: 4063 HARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEFTATSGLTVNK 4242
            ++R  +    +HPK      +HL FADD+++F  G   SM  + + LD+F   SGL VNK
Sbjct: 533  YSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNK 592

Query: 4243 SKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSPLISQIS 4410
             KS +F  G+    ++     +GFP GT P++YLGLPL  + L   DY PL+ ++S
Sbjct: 593  DKSQLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLS 647


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  349 bits (895), Expect = 8e-93
 Identities = 214/656 (32%), Positives = 339/656 (51%), Gaps = 14/656 (2%)
 Frame = +1

Query: 2485 GDFNCVQDPSERVGKRTPS---EKELADFVDTSAFLTLQDAPSTGCFFTFAGKD----VF 2643
            GDFN V  P E      PS   ++ + DF    + + L D    G  FT+  K     + 
Sbjct: 3    GDFNQVLLPQEH--SNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 2644 SRIDRTLINTIWLE-----NNWFCRTEFLPRGIISDHSACISTLFQHVQNFKKDFRFCNA 2808
             ++DR L N  W       +  F   +F      SDH +C   L  +  + K+ F+F N 
Sbjct: 61   KKLDRILANDSWCNLYPSSHGLFGNLDF------SDHVSCGVVLEANGISAKRPFKFFNF 114

Query: 2809 WMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNISEKATVARAE 2988
             +++  F N + +NW +  V      ++S KL  ++  ++  +R +++ I  +   A   
Sbjct: 115  LLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHEL 174

Query: 2989 LEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINFSDKSTKYFHS 3168
            L   Q  +  +P +           +K   L  +E++F  QR++       D +T YFH 
Sbjct: 175  LITCQNLTLANP-SVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHR 233

Query: 3169 LVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGKNTPRTPVDWSVMGA--GF 3342
            +V      NTI+ +   NG      Q I+   + YY  L G       ++   M     +
Sbjct: 234  MVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTY 293

Query: 3343 RLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXXXXXXASVDEF 3522
            R S D  S L +  +  EI+ A   +  +K  GPDG++  FF            A++ EF
Sbjct: 294  RCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEF 353

Query: 3523 FSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSRMSPFLQKLIS 3702
            F  G +L++ N T + LIPKT++   IS+FRPI+C N +YK+I+K+LTSR+   L  +I 
Sbjct: 354  FDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIG 413

Query: 3703 PAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCISWDFLRDVLYG 3882
             +QSAF+ GR++ +N  LA E++  Y R + I+ R M+K+DL+KA+D + W+F+   L  
Sbjct: 414  HSQSAFLPGRSLAENVLLATEMVHGYNRLN-ISPRGMLKVDLKKAFDSVKWEFVTAALRA 472

Query: 3883 LNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFLFCMEYLSRLI 4062
            L     +I WI  C+T+ +F+I++NG + GF R  +GLRQGDP+SP LF+  ME  S+L+
Sbjct: 473  LAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLL 532

Query: 4063 HARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEFTATSGLTVNK 4242
            ++R  +    +HPK      +HL FADD+++F  G   SM  + + LD+F   SGL VNK
Sbjct: 533  YSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNK 592

Query: 4243 SKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSPLISQIS 4410
             KS +F  G+    ++     +GFP GT P++YLGLPL  + L   DY PL+ ++S
Sbjct: 593  DKSQLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLS 647


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  342 bits (878), Expect = 7e-91
 Identities = 198/552 (35%), Positives = 295/552 (53%), Gaps = 6/552 (1%)
 Frame = +1

Query: 2782 KKDFRFCNAWMEHPSFQNSLKENWVNAP---VREGKQEQLSAKLHRLRPILRQLNRTHFN 2952
            +K F+F N   + P F   ++ +W ++    V      + S KL  L+P LR+L +    
Sbjct: 545  RKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLG 604

Query: 2953 NISEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHI 3132
            ++ ++   A   L   Q  +  +P +               HL   E+ FL Q++K   +
Sbjct: 605  DLPKRTREAHILLCEKQATTLANP-SQETIAEELKAYTDWTHLSELEEGFLKQKSKLHWM 663

Query: 3133 NFSDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGKNTPR-- 3306
            N  D +  YFH   +   +RN+I  IR  N ET    + I  +   ++++   + +    
Sbjct: 664  NVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFH 723

Query: 3307 -TPVDWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXX 3483
               V+       +R S  DQ+ L R V+  EI+  LF + ++K+PGPDG+TS FF     
Sbjct: 724  GISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWS 783

Query: 3484 XXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKIL 3663
                   A++  FF KG + + LN TI++LIPK      + D+RPI+C NV+YK+I+KIL
Sbjct: 784  LTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKIL 843

Query: 3664 TSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYD 3843
             +R+   L   I   QSAF+K R +M+N  LA EL++ Y ++S +T RC +KID+ KA+D
Sbjct: 844  ANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKES-VTPRCAMKIDISKAFD 902

Query: 3844 CISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPT 4023
             + W FL + L  LNF   F +WI  C+++ATFS+ +NG   GF    RGLRQG  +SP 
Sbjct: 903  SVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPY 962

Query: 4024 LFLFCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDAL 4203
            LF+ CM  LS +I          +HPKC     THL FADDL++F  G   S+  + +  
Sbjct: 963  LFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVF 1022

Query: 4204 DEFTATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTND 4383
             EF   SGL ++  KS I+L GV   ++ + L  F F  G LPV+YLGLPL +K +TT D
Sbjct: 1023 KEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTAD 1082

Query: 4384 YSPLISQISNFI 4419
            YSPLI  +   I
Sbjct: 1083 YSPLIEAVKTKI 1094


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  323 bits (828), Expect = 4e-85
 Identities = 205/641 (31%), Positives = 329/641 (51%), Gaps = 16/641 (2%)
 Frame = +1

Query: 2422 RMDMWDSLIL-HVPLDA---PAFVCGDFNCVQDPSERVGKRTPS-EKELADFVDTSAFLT 2586
            R ++W+ L+L  V L     P  + GDFN V  P+E     + +  + +  F D      
Sbjct: 67   RKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAE 126

Query: 2587 LQDAPSTGCFFTF----AGKDVFSRIDRTLINTIWLENNWFCRTEFLPRGIISDHSACIS 2754
            L D    G  FT+    A + V  ++DR L+N  W          F      SDH++C  
Sbjct: 127  LCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVF-GEPDFSDHASCGV 185

Query: 2755 TLFQHVQNFKKDFRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQL 2934
             +   +   K+ FRF N  +++P F + + E W +  V      ++S KL  L+  +R  
Sbjct: 186  IINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTF 245

Query: 2935 NRTHFNNISEKATVARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQR 3114
            +  +F+N+ ++   A   +   Q ++  DP             +K   L  +E++F  QR
Sbjct: 246  SMENFSNLEKRVKEAHNLVLYRQNKTLSDP-TIPNAALEMEAQRKWLILVKAEESFFCQR 304

Query: 3115 AKTKHINFSDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGK 3294
            ++   +   D +T YFH +       NTI  I  +NG        I    I+Y+S+L G 
Sbjct: 305  SRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGG 364

Query: 3295 NTPRTPV---DWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAF 3465
                  +   D+ ++   FR S D +  L    S  +I++A F    +K  GPDGF   F
Sbjct: 365  EVGPPMLIQEDFDLL-LPFRCSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEF 423

Query: 3466 FXXXXXXXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTN---- 3633
            F             +V EFF+  ++L++ N T + LIPK T+   ++DFRPI+C +    
Sbjct: 424  FKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPI 483

Query: 3634 VVYKIITKILTSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCM 3813
             +YK+I ++LT+R+   L ++ISP QSAF+ GR + +N  LA EL++ Y R++ I  R M
Sbjct: 484  TLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNRQN-IDPRGM 542

Query: 3814 VKIDLRKAYDCISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRG 3993
            +K+DLRKA+D I WDF+   L  +     F+YWI  C+++ TFS+ +NG + GF +  RG
Sbjct: 543  LKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRG 602

Query: 3994 LRQGDPMSPTLFLFCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDP 4173
            LRQG+P+SP LF+  ME  S L+++R  A    +HPK +    +HL FADD+++F  G  
Sbjct: 603  LRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISHLMFADDIMVFFDGGS 662

Query: 4174 ESMRVLRDALDEFTATSGLTVNKSKSHIFLGGVRPFEKQEI 4296
             S+  + +AL++F   SGL +N+ K+H++L G+   E   I
Sbjct: 663  SSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRIEASTI 703


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  317 bits (811), Expect = 4e-83
 Identities = 169/424 (39%), Positives = 241/424 (56%), Gaps = 2/424 (0%)
 Frame = +1

Query: 3154 KYFHSLVKRNMIRNTISFIRRENGETT--GDVQTIIADFIDYYSDLFGKNTPRTPVDWSV 3327
            K FH  V     +N I  I   +G      D+      F   +  L  ++     V    
Sbjct: 22   KTFHRAVIERETKNMIKEIYCTDGRVVQGDDIMVEAEKFFKEFLQLIPEDFVGVEVRELQ 81

Query: 3328 MGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXXXXXXA 3507
                FR ++ D   L R VS  EI+  LF +  DK+PGPDG+TS F+             
Sbjct: 82   DLLQFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTL 141

Query: 3508 SVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSRMSPFL 3687
             V  FF KG + + +N  I++LIPK      + D+RPI+C NV+YK+I+KI+ +R+   L
Sbjct: 142  PVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLL 201

Query: 3688 QKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCISWDFLR 3867
             + I+  QSAF+K R +++N  LA EL++ Y + S I+ARC +KID+ KA+D + W FL 
Sbjct: 202  PRFIAENQSAFVKDRLLIENLLLATELVKDYHKDS-ISARCAIKIDISKAFDSVQWSFLT 260

Query: 3868 DVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFLFCMEY 4047
            + L  +NF P FI+WI  C+T+A+FS+ +NG   G+ + KRGLRQG  +SP LF+ CM+ 
Sbjct: 261  NTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDV 320

Query: 4048 LSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEFTATSG 4227
            LS+++        F  HPKC     THL+FADDL++   G   S+  + +  DEF   SG
Sbjct: 321  LSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSG 380

Query: 4228 LTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSPLISQI 4407
            L ++  KS +++ GV P  KQEI   F F  G LPV+YLGLPL +K LT+ DYSPL+ QI
Sbjct: 381  LRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQI 440

Query: 4408 SNFI 4419
               I
Sbjct: 441  KKRI 444


>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1383

 Score =  313 bits (803), Expect = 4e-82
 Identities = 230/792 (29%), Positives = 376/792 (47%), Gaps = 16/792 (2%)
 Frame = +1

Query: 2080 IATWNIRGMQQAPKKNAVRALITKHKIDIFGILETXXXXXXXXXXXPTFLQG---WNFMH 2250
            I +WNIRG+    K+ ++R LI  +      + ET             +      W F  
Sbjct: 4    ILSWNIRGLNARMKRASLRKLIAINNPGCVFVQETKMENINARLMRTCWKSNEIEWIFSP 63

Query: 2251 NFDIVSNGRILLCWNSNTVDVNIISVEKQVIHAN---VTCRISGNNFHYALC--YGFYTI 2415
            +    S+G IL  W     D NI +    VIH +   ++   S + F   L   Y    I
Sbjct: 64   SRG--SSGGILAIW-----DKNIFNANSNVIHQSWIAISGIFSTDQFECTLITVYNPCEI 116

Query: 2416 EDRMDMWDSLI-LHVPLDAPAFVCGDFNCVQDPSERVGKRTPSEKELADFVDTSAFLTLQ 2592
              R ++W  +I        P  + GDFN V  PSER G  + S   + DF      L L 
Sbjct: 117  AARSEVWKQIIEFQNSNPLPCLLVGDFNEVLRPSER-GSLSFSHNGINDFKSFVQELKLL 175

Query: 2593 DAPSTGCFFTFAGKDVFSRIDRTLINTIWLENNWFCRTEFLPRGIISDHSACISTLFQHV 2772
            + PS+   +T+   +  S +DR L++  W+ +    +   L RG+ SDH  C   +  H+
Sbjct: 176  EIPSSSRAYTWYRANSKSLLDRLLVSPEWVSHCPNIKVSILQRGL-SDH--CPLLVHSHI 232

Query: 2773 QNF-KKDFRFCNAWMEHPSFQNSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHF 2949
            Q +  K FRF N W+  P     ++ +W ++P     +  +  KL   +  L++ N   F
Sbjct: 233  QEWGPKPFRFNNCWLTDPKCMKIVEASWSSSP-----KISVVEKLKETKKRLKEWNLNEF 287

Query: 2950 NNISEKAT-----VARAELEAAQRQSDRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQR 3114
             +I          +A  + EA +R+ D++ L               +     ++ + AQR
Sbjct: 288  GSIDANIRKLEDCIANFDKEADERELDKEELEKRREAQADLWKWMKR-----KEIYWAQR 342

Query: 3115 AKTKHINFSDKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGK 3294
            ++   +   DK+TK+FH++      +N ++ I  + G++T D   I  +   ++  +F +
Sbjct: 343  SRITWLKAGDKNTKFFHAIASNKKRKNMMACIETD-GQSTNDPSQIKKEARAFFKKIFKE 401

Query: 3295 NTPRTPVDWSVMGAGFRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXX 3474
            +  + P   ++     RLS +  ++LI P +  EI  A+     DKAPGPDGF   F   
Sbjct: 402  DHVKRPTLENLHLK--RLSQNQANSLITPFTTEEIDTAVSSCASDKAPGPDGFNFKFVKS 459

Query: 3475 XXXXXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIIT 3654
                        V++F+  G + +  N   ++LIPK  +   + D+RPI+    +YKI+ 
Sbjct: 460  AWDIIKTDIYGIVNDFWETGCLPQGCNTAYIALIPKIDNPSSLKDYRPISMVGFIYKIVA 519

Query: 3655 KILTSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRK 3834
            K+L  R+   +  LISP QS+++KGR I+D   +A E+I + ++++      ++K+D  K
Sbjct: 520  KLLAKRLQSVISSLISPLQSSYVKGRQILDGALVASEIIESCKKRN--IEAILLKLDFHK 577

Query: 3835 AYDCISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPM 4014
            AYD +SW+FL+  L  +NF   +  WI TCVTSA+ SI +NG      +  RGLRQGDP+
Sbjct: 578  AYDSVSWNFLQWTLDQMNFPVKWCEWIKTCVTSASASILVNGSPTPPFKLHRGLRQGDPL 637

Query: 4015 SPTLFLFCMEYLSRLIHARTHASTFVHHPKCN-STDTTHLAFADDLLLFGRGDPESMRVL 4191
            SP LF+   E LS++I   T    +   P C+  ++ THL +ADD L+F   +  S++ +
Sbjct: 638  SPFLFVLVGEVLSQMISKATSLQLWRGIPACSRGSEITHLQYADDTLMFCEANTNSLKNI 697

Query: 4192 RDALDEFTATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSL 4371
            +  L  F   SGL VN  KS +    V     QE  +      GT+P  YLGLP+     
Sbjct: 698  QKTLIIFQLVSGLQVNFHKSSLMGLNVTSSWIQEAANSLMCKIGTIPFSYLGLPIGDNPA 757

Query: 4372 TTNDYSPLISQI 4407
                + P+I ++
Sbjct: 758  RIRTWDPIIDKL 769


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  309 bits (791), Expect = 9e-81
 Identities = 169/429 (39%), Positives = 244/429 (56%), Gaps = 7/429 (1%)
 Frame = +1

Query: 3142 DKSTKYFHSLVKRNMIRNTISFIRRENGETTGDVQTIIADFIDYYSDLFGKNTPRTPVDW 3321
            D++ K FH  +      N+I  I   +G      Q I  + ++Y+ D         P D+
Sbjct: 91   DRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFL----QTIPADY 146

Query: 3322 SVMGAG-------FRLSSDDQSALIRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXX 3480
              M          FR S DD   L R V+  EI+  +F +  DK+PGPDG+TS F+    
Sbjct: 147  EGMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASW 206

Query: 3481 XXXXXXXXASVDEFFSKGIILRKLNHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKI 3660
                     ++  FF+KG + + +N TI++LIPK      I D+RPI+C NV+YK I+KI
Sbjct: 207  EIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKI 266

Query: 3661 LTSRMSPFLQKLISPAQSAFIKGRNIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAY 3840
            L +R+   L K I   QSAF+K R +++N  LA EL++ Y + S I+ RC +KID+ KA+
Sbjct: 267  LANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDS-ISTRCAMKIDISKAF 325

Query: 3841 DCISWDFLRDVLYGLNFHPCFIYWILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSP 4020
            D + W FL  VL  +NF   FI+WI  C+++A+FSI +NG   G+ R  RGLRQG  +SP
Sbjct: 326  DSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSP 385

Query: 4021 TLFLFCMEYLSRLIHARTHASTFVHHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDA 4200
             LF+  M+ LSR++     A  F +HP+C +   THL FADDL++   G   S+  +   
Sbjct: 386  YLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKV 445

Query: 4201 LDEFTATSGLTVNKSKSHIFLGGVRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTN 4380
            L++F A  GL +   K+ ++L GV    +Q +   + F  G LPV+YLGLPL +K LTT+
Sbjct: 446  LNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTS 505

Query: 4381 DYSPLISQI 4407
            DYSPLI QI
Sbjct: 506  DYSPLIDQI 514


>ref|XP_007008704.1| Uncharacterized protein TCM_042330 [Theobroma cacao]
            gi|508725617|gb|EOY17514.1| Uncharacterized protein
            TCM_042330 [Theobroma cacao]
          Length = 2249

 Score =  304 bits (779), Expect = 2e-79
 Identities = 214/710 (30%), Positives = 335/710 (47%), Gaps = 2/710 (0%)
 Frame = +1

Query: 2296 SNTVDVNIISVEKQVIHANVTCRISGNNFHYALCYGFYTIEDRMDMWDSLI-LHVPLDAP 2472
            S T    +I    Q +H  +T       F   + Y   T  +R  +WD L  L   ++ P
Sbjct: 953  SPTAKNYVIFDHPQCLHVRLTSPWLETPFFVTIVYAKCTRSERTLLWDCLRRLADDIEVP 1012

Query: 2473 AFVCGDFNCVQDPSERVGKRTPSEKELADFVDTSAFLTLQDAPSTGCFFTFAGKDVFSRI 2652
              V GDFN +    ER+    P E  + DF  T     L D    G  FT+    +F R+
Sbjct: 1013 WLVGGDFNVILKREERLYGSAPHEGAMEDFASTLLDCGLLDGGFEGNSFTWTNNRMFQRL 1072

Query: 2653 DRTLINTIWLENNWFCRTEFLPRGIISDHSACISTLFQHVQNFKKDFRFCNAWMEHPSFQ 2832
            DR + N  W+      R + L R   SDH   + + F   +     FRF +AW+ H  F+
Sbjct: 1073 DRIVYNHHWINKFPVTRIQHLNRDG-SDHCPLLISCFNSSEKAPSSFRFQHAWVLHHDFK 1131

Query: 2833 NSLKENWVNAPVREGKQEQLSAKLHRLRPILRQLNRTHFNNISEKATVARAELEAAQRQS 3012
             S++ NW N P+     +   +K HRL+  L+  N+  F +I  K   A   +E  +   
Sbjct: 1132 TSVESNW-NLPINGSGLQAFWSKQHRLKQHLKWWNKAVFGDIFSKLKEAEKRVEECEILH 1190

Query: 3013 DRDPLNXXXXXXXXXXXKKCQHLDTSEKNFLAQRAKTKHINFSDKSTKYFHSLVKRNMIR 3192
             ++              +  + L+  E  F  Q++  K +   +++TK+FH  +++  IR
Sbjct: 1191 QQEQTFESRIKLNKSYAQLNKQLNIEEL-FWKQKSGVKWVVEGERNTKFFHMRMQKKRIR 1249

Query: 3193 NTISFIRRENGETTGDVQTIIADFIDYYSDLFGKNTPRTPVDWSVMGAGFRLSSDDQSAL 3372
            + I  ++   G    D + +    I+Y+S L  K  P     +        +S+ +   L
Sbjct: 1250 SHIFKVQDPEGRWIEDQEQLKHSAIEYFSSLL-KVEPCYDSRFQSSLIPSIISNSENELL 1308

Query: 3373 IRPVSHIEIRNALFDIGDDKAPGPDGFTSAFFXXXXXXXXXXXXASVDEFFSKGIILRKL 3552
                S  E+++A+F I  + A GPDGF+S F+             +V +FF    I R +
Sbjct: 1309 CAEPSLQEVKDAVFGINSESAAGPDGFSSYFYQQCWNIIAQDLLDAVRDFFHGANIPRGV 1368

Query: 3553 NHTIVSLIPKTTHDPGISDFRPIACTNVVYKIITKILTSRMSPFLQKLISPAQSAFIKGR 3732
              T + L+PK +     SDFRPI+   V+ KIITK+L++R++  L  +I+  QS F+ GR
Sbjct: 1369 TSTTLILLPKKSSASKWSDFRPISLCTVMNKIITKLLSNRLAKVLPSIITENQSGFVGGR 1428

Query: 3733 NIMDNFYLAQELIRTYERKSGITARCMVKIDLRKAYDCISWDFLRDVLYGLNFHPCFIYW 3912
             I DN  LAQELI     KS       +K+D+ KAYD + W FL  VL    F+  +I  
Sbjct: 1429 LISDNILLAQELIGKLNTKSR-GGNLALKLDMMKAYDKLDWSFLFKVLQHFGFNGQWIKM 1487

Query: 3913 ILTCVTSATFSITINGGSHGFVRGKRGLRQGDPMSPTLFLFCMEYLSRLIHARTHASTFV 4092
            I  C+++  FS+ +NG + G+ + +RGLRQGD +SP LF+   EYLSR ++A       +
Sbjct: 1488 IQKCISNCWFSLLLNGRTEGYFKSERGLRQGDSISPQLFIIAAEYLSRGLNALYDQYPSL 1547

Query: 4093 HHPKCNSTDTTHLAFADDLLLFGRGDPESMRVLRDALDEFTATSGLTVNKSKS-HIFLGG 4269
            H+    S   +HLAFADD+L+F  G   +++ +   L E+   SG  +N  KS  +    
Sbjct: 1548 HYSSGVSISVSHLAFADDVLIFTNGSKSALQRILAFLQEYQEISGQRINVQKSCFVTHTN 1607

Query: 4270 VRPFEKQEILDLFGFPEGTLPVKYLGLPLASKSLTTNDYSPLISQISNFI 4419
            V    +Q I    GF    L + YLG PL         ++ L+++I   I
Sbjct: 1608 VSSSRRQIIAQTTGFSHQLLLITYLGAPLYKGHKKVILFNDLVAKIEERI 1657