BLASTX nr result
ID: Mentha26_contig00003054
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha26_contig00003054
(364 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFV61844.1| RNA polymerase alpha subunit (chloroplast) [Origa... 80 4e-13
ref|YP_007507143.1| RNA polymerase alpha subunit (chloroplast) [... 77 2e-12
gb|AER52690.1| RNA polymerase alpha subunit [Asclepias cutleri] ... 75 9e-12
gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium olea... 75 1e-11
gb|AGW05005.1| RNA polymerase alpha subunit [Vincetoxicum rossicum] 74 2e-11
gb|AGW04774.1| RNA polymerase alpha subunit [Orthosia scoparia] 74 2e-11
gb|AGW04547.1| RNA polymerase alpha subunit [Eustegia minuta] 74 2e-11
gb|AGW04471.1| RNA polymerase alpha subunit [Astephanus triflorus] 74 2e-11
gb|AER53175.1| RNA polymerase alpha subunit [Asclepias subaphylla] 74 2e-11
gb|AER52935.1| RNA polymerase alpha subunit [Asclepias macrotis]... 74 2e-11
gb|AER52444.1| RNA polymerase alpha subunit [Asclepias albicans]... 74 2e-11
ref|YP_008578654.1| RNA polymerase alpha subunit (chloroplast) [... 74 2e-11
gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii] 74 3e-11
ref|YP_008578571.1| RNA polymerase alpha subunit (chloroplast) [... 73 5e-11
gb|AER52608.1| RNA polymerase alpha subunit [Asclepias coulteri] 73 5e-11
ref|YP_008963723.1| RNA polymerase alpha subunit (chloroplast) [... 72 6e-11
ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [... 72 6e-11
gb|AGW04394.1| RNA polymerase alpha subunit [Araujia sericifera] 72 6e-11
gb|ADD31230.1| RNA polymerase alpha subunit protein [Liquidambar... 72 6e-11
gb|AFK81504.1| RNA polymerase alpha subunit [Camellia taliensis] 72 8e-11
>gb|AFV61844.1| RNA polymerase alpha subunit (chloroplast) [Origanum vulgare subsp.
vulgare]
Length = 335
Score = 79.7 bits (195), Expect = 4e-13
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +2
Query: 47 DVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
++ P++Y C RSNIYTLLDL++K+QED+MKIEHFRLGD+K L I+EK FAIFL
Sbjct: 276 ELSPRVYNCLIRSNIYTLLDLMNKSQEDLMKIEHFRLGDVKEILAILEKHFAIFL 330
>ref|YP_007507143.1| RNA polymerase alpha subunit (chloroplast) [Salvia miltiorrhiza]
gi|401879773|gb|AFQ30960.1| RNA polymerase alpha subunit
(chloroplast) [Salvia miltiorrhiza]
gi|573461983|emb|CCQ71652.1| RNA polymerase alpha
subunit (chloroplast) [Salvia miltiorrhiza]
Length = 335
Score = 77.4 bits (189), Expect = 2e-12
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = +2
Query: 47 DVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
++ P++Y C RSNIYTLLDL++K+QED+MKIEHFRLGD+K L I+E+ FAIFL
Sbjct: 276 ELSPRIYNCLIRSNIYTLLDLMNKSQEDLMKIEHFRLGDVKGILDILEQHFAIFL 330
>gb|AER52690.1| RNA polymerase alpha subunit [Asclepias cutleri]
gi|355332087|gb|AER52772.1| RNA polymerase alpha subunit
[Asclepias cutleri]
Length = 337
Score = 75.1 bits (183), Expect = 9e-12
Identities = 34/58 (58%), Positives = 47/58 (81%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFLLN 217
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL N
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNTSQEDLMKIEHFRIEDVKQILVVLEKHLAIFLPN 334
>gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium oleander]
Length = 337
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/56 (60%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L I+EK AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVILEKHLAIFL 332
>gb|AGW05005.1| RNA polymerase alpha subunit [Vincetoxicum rossicum]
Length = 337
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/56 (58%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 332
>gb|AGW04774.1| RNA polymerase alpha subunit [Orthosia scoparia]
Length = 340
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/56 (58%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 332
>gb|AGW04547.1| RNA polymerase alpha subunit [Eustegia minuta]
Length = 344
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/56 (58%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 281 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 336
>gb|AGW04471.1| RNA polymerase alpha subunit [Astephanus triflorus]
Length = 340
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/56 (58%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 332
>gb|AER53175.1| RNA polymerase alpha subunit [Asclepias subaphylla]
Length = 337
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/56 (58%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 332
>gb|AER52935.1| RNA polymerase alpha subunit [Asclepias macrotis]
gi|355332333|gb|AER53015.1| RNA polymerase alpha subunit
[Asclepias macrotis]
Length = 337
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/56 (58%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 332
>gb|AER52444.1| RNA polymerase alpha subunit [Asclepias albicans]
gi|355331838|gb|AER52526.1| RNA polymerase alpha subunit
[Asclepias albicans] gi|355332169|gb|AER52853.1| RNA
polymerase alpha subunit [Asclepias leptopus]
gi|355332412|gb|AER53093.1| RNA polymerase alpha subunit
[Asclepias masonii] gi|355332576|gb|AER53255.1| RNA
polymerase alpha subunit [Asclepias subaphylla]
gi|355332657|gb|AER53335.1| RNA polymerase alpha subunit
[Asclepias subulata] gi|355332740|gb|AER53417.1| RNA
polymerase alpha subunit [Asclepias subulata]
gi|355332823|gb|AER53499.1| RNA polymerase alpha subunit
[Asclepias albicans x Asclepias subulata]
Length = 337
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/56 (58%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 332
>ref|YP_008578654.1| RNA polymerase alpha subunit (chloroplast) [Asclepias syriaca]
gi|326200311|gb|ADZ52350.1| RNA polymerase alpha subunit
[Asclepias syriaca] gi|544187240|gb|AGW05168.1| RNA
polymerase alpha subunit (chloroplast) [Asclepias
syriaca]
Length = 340
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/56 (58%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 332
>gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii]
Length = 337
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/56 (58%), Positives = 45/56 (80%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L+ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 277 LEFPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 332
>ref|YP_008578571.1| RNA polymerase alpha subunit (chloroplast) [Asclepias nivea]
gi|544187128|gb|AGW05066.1| RNA polymerase alpha subunit
(chloroplast) [Asclepias nivea]
Length = 337
Score = 72.8 bits (177), Expect = 5e-11
Identities = 32/55 (58%), Positives = 45/55 (81%)
Frame = +2
Query: 47 DVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L ++EK AIFL
Sbjct: 278 ELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIFL 332
>gb|AER52608.1| RNA polymerase alpha subunit [Asclepias coulteri]
Length = 337
Score = 72.8 bits (177), Expect = 5e-11
Identities = 32/56 (57%), Positives = 46/56 (82%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHFR+ D+K+ L +++K AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLKKHLAIFL 332
>ref|YP_008963723.1| RNA polymerase alpha subunit (chloroplast) [Liquidambar formosana]
gi|491650402|gb|AGL13462.1| RNA polymerase alpha subunit
(chloroplast) [Liquidambar formosana]
Length = 337
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/55 (60%), Positives = 45/55 (81%)
Frame = +2
Query: 47 DVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
++ P++Y C RSNI+TLLDL++ NQED+MKIEHFR+ D+K+ L I+EK FAI L
Sbjct: 278 ELPPRIYTCLKRSNIHTLLDLLNNNQEDLMKIEHFRIEDVKKILGILEKHFAIDL 332
>ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [Lindenbergia
philippensis] gi|557136896|emb|CDI43950.1| RNA
polymerase alpha subunit (chloroplast) [Lindenbergia
philippensis]
Length = 336
Score = 72.4 bits (176), Expect = 6e-11
Identities = 34/55 (61%), Positives = 45/55 (81%)
Frame = +2
Query: 47 DVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
++ P++Y C RSNIYTLLDL++ +QED+MKIEHFRL D+K+ L I+EK FAI L
Sbjct: 277 ELSPRVYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRLEDVKQILGILEKHFAIDL 331
>gb|AGW04394.1| RNA polymerase alpha subunit [Araujia sericifera]
Length = 340
Score = 72.4 bits (176), Expect = 6e-11
Identities = 32/56 (57%), Positives = 45/56 (80%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
L++ P++Y C RSNIYTLLDL++ +QED+MKIEHF + D+K+ L ++EK AIFL
Sbjct: 277 LELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFHIEDVKQILVVLEKHLAIFL 332
>gb|ADD31230.1| RNA polymerase alpha subunit protein [Liquidambar styraciflua]
Length = 338
Score = 72.4 bits (176), Expect = 6e-11
Identities = 33/55 (60%), Positives = 45/55 (81%)
Frame = +2
Query: 47 DVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFL 211
++ P++Y C RSNI+TLLDL++ NQED+MKIEHFR+ D+K+ L I+EK FAI L
Sbjct: 279 ELPPRIYTCLKRSNIHTLLDLLNNNQEDLMKIEHFRIEDVKKILGILEKHFAIDL 333
>gb|AFK81504.1| RNA polymerase alpha subunit [Camellia taliensis]
Length = 335
Score = 72.0 bits (175), Expect = 8e-11
Identities = 34/57 (59%), Positives = 45/57 (78%)
Frame = +2
Query: 44 LDVGPQLYLCCNRSNIYTLLDLIHKNQEDIMKIEHFRLGDIKRDLTIIEK*FAIFLL 214
L++ P++Y C RSNIYTLLDL++ QED+MKIEHFR+ D+ + L I+EK FAI LL
Sbjct: 275 LELPPRIYNCLKRSNIYTLLDLLNNTQEDLMKIEHFRIEDVNQILGILEKHFAIDLL 331