BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha26_contig00000681
         (3206 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007010802.1| DNA-directed RNA polymerase isoform 4 [Theob...  1406   0.0  
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...  1399   0.0  
ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III s...  1399   0.0  
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...  1399   0.0  
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...  1398   0.0  
ref|XP_007010800.1| DNA-directed RNA polymerase isoform 2 [Theob...  1396   0.0  
ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theob...  1396   0.0  
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...  1396   0.0  
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...  1394   0.0  
ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theob...  1385   0.0  
ref|XP_007010804.1| DNA-directed RNA polymerase isoform 6 [Theob...  1385   0.0  
ref|XP_007010803.1| DNA-directed RNA polymerase isoform 5 [Theob...  1383   0.0  
ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theob...  1383   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1371   0.0  
ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par...  1360   0.0  
ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par...  1359   0.0  
ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Caps...  1359   0.0  
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab...  1357   0.0  
ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr...  1351   0.0  
dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...  1349   0.0  

>ref|XP_007010802.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
            gi|508727715|gb|EOY19612.1| DNA-directed RNA polymerase
            isoform 4 [Theobroma cacao]
          Length = 1034

 Score = 1406 bits (3639), Expect = 0.0
 Identities = 704/930 (75%), Positives = 778/930 (83%), Gaps = 7/930 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGK
Sbjct: 107  EKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGK 166

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYF+IKG EKVIL+QEQLSKNRIIID DKKG + A         
Sbjct: 167  DEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEAT 226

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEKIYL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE
Sbjct: 227  KSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIE 286

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ QALEYLE KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC
Sbjct: 287  ECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKC 346

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
            +YVAVMLRRM+EAILNKD MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++V
Sbjct: 347  LYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLV 406

Query: 2306 LSRLSRSNRFDISQLIGG-ESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATL 2130
            LS+ SRS+  D SQ +   E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TL
Sbjct: 407  LSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTL 466

Query: 2129 GFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 1950
            G+MTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG
Sbjct: 467  GYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 526

Query: 1949 PLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIG 1770
            PLI LCY LGVEDLELLS EELH PNS+L+I NGLILGKHRRPQ FA +MRKLRRAGK+G
Sbjct: 527  PLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVG 586

Query: 1769 EFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGL 1590
            EFVS+FVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKEL DGVR+F  FL++GL
Sbjct: 587  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGL 646

Query: 1589 IEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 1410
            IEYLDVNEENNALIALYE  A  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM
Sbjct: 647  IEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 706

Query: 1409 GKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGY 1230
            GKQAMGNIAYNQLCRMDTL+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGY
Sbjct: 707  GKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 766

Query: 1229 DIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDD 1050
            DIEDAIVMNKSSLDRGFGRCIVMK+ SAV QKYE G SDRI+ PQR G G+E MQILDDD
Sbjct: 767  DIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDD 826

Query: 1049 GLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDR 870
            G+A PGEIIRP DIYINK++ + T+  G   ++ +L DS Y+ ++QTYKGPEGE+ VVDR
Sbjct: 827  GIATPGEIIRPNDIYINKESSIHTR--GSRVSSESLPDSAYRPARQTYKGPEGESCVVDR 884

Query: 869  VALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLI 690
            VALC+DRN+N+ +KF+IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERG+CPDLI
Sbjct: 885  VALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLI 944

Query: 689  MNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGXXXXXXXXXXXXXXXXXXXXXGR 510
            MNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG                       
Sbjct: 945  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLIKHGFSY 1004

Query: 509  -----ISSTQASLASHCKHIFSWVPSTTKS 435
                 I S Q     HCKHIF W   TT+S
Sbjct: 1005 NGKDFIYSVQVLQVVHCKHIFLWDQFTTRS 1034


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 1399 bits (3622), Expect = 0.0
 Identities = 686/876 (78%), Positives = 769/876 (87%), Gaps = 1/876 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E L+P  CRL D TYAAP+ VNIEY+ G+   K    K DV+IGR+PIMLRSC CVLYGK
Sbjct: 99   EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGK 158

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYFIIKGTEKV+L+QEQLSKNR+IID DKKG + A         
Sbjct: 159  DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETV 218

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEK K+YL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE
Sbjct: 219  KSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIE 278

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ +ALEYLE KV+R    + P ++EGRA +ILRD FLAN+PVH NNFRPKC
Sbjct: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
             YVAVMLRRM+EA+LNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  + ++++
Sbjct: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDII 398

Query: 2306 LSRLSRSNRFDISQLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLG 2127
            LS+ SRS+RFD+SQ I  +SIT GLERTLSTGNFD+KRFKMHRKGMTQ +ARLS+I TLG
Sbjct: 399  LSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLG 458

Query: 2126 FMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGP 1947
             MT++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+EGP
Sbjct: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518

Query: 1946 LIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIGE 1767
            LI LCY LGVEDLELLS EELH PNS+L+IFNGLILGKHRRP+ FA+ MRKLRRAGKIGE
Sbjct: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578

Query: 1766 FVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGLI 1587
            FVS+FVNEKQRCVYIASDGGRVCRPLVIADKG+SRIKEHHMKEL DGVRSF  FL+EGLI
Sbjct: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELSDGVRSFDDFLREGLI 638

Query: 1586 EYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMG 1407
            EYLDVNEENNALIALYE +A  +TTHIEIEPFTILGV AGLIPYPHHNQSPRNTYQCAMG
Sbjct: 639  EYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698

Query: 1406 KQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGYD 1227
            KQAMGNIA+NQLCRMD+L+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGYD
Sbjct: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758

Query: 1226 IEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDDG 1047
            IEDAIVMNKSSLDRGFGRCIV+KK +A+ QKY N TSDRI+ P R G G+E MQILDDDG
Sbjct: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGSERMQILDDDG 818

Query: 1046 LAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDRV 867
            LAAPGEII+P D+YINK++P++T+  G   +     DS+Y+S++QTYKGP+GET VVDRV
Sbjct: 819  LAAPGEIIKPNDVYINKESPLETR--GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 876

Query: 866  ALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLIM 687
            ALCSD+N ++C+KF+IRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERG+CPDLIM
Sbjct: 877  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 936

Query: 686  NPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            NPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 937  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972



 Score =  285 bits (728), Expect = 1e-73
 Identities = 134/153 (87%), Positives = 145/153 (94%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKD IYSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARG+GPRVM+TRQPTEGR+RNGG
Sbjct: 997  GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML++ERLM+SSDPFEVQVCR CGLLGYY+ KLK GICS CKNG
Sbjct: 1057 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1116

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            +N+S+MKLPYACKLL QELQSMN+VPRLKL EA
Sbjct: 1117 NNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1149


>ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X3 [Citrus sinensis]
          Length = 1058

 Score = 1399 bits (3620), Expect = 0.0
 Identities = 686/876 (78%), Positives = 769/876 (87%), Gaps = 1/876 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E L+P  CRL D TYAAP+ VNIEY+ G+   K    K DV+IGR+PIMLRSC CVLYGK
Sbjct: 8    EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGK 67

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYFIIKGTEKV+L+QEQLSKNR+IID DKKG + A         
Sbjct: 68   DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETV 127

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEK K+YL L+QF KKIPIM+V+KAMG+ESDQEVVQM+GRDPRYS LLLPSIE
Sbjct: 128  KSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESDQEVVQMVGRDPRYSALLLPSIE 187

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ +ALEYLE KV+R    + P ++EGRA +ILRD FLAN+PVH NNFRPKC
Sbjct: 188  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 247

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
             YVAVMLRRM+EA+LNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  + ++++
Sbjct: 248  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDII 307

Query: 2306 LSRLSRSNRFDISQLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLG 2127
            LS+ SRS+RFD+SQ I  +SIT GLERTLSTGNFD+KRFKMHRKGMTQ +ARLS+I TLG
Sbjct: 308  LSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLG 367

Query: 2126 FMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGP 1947
             MT++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+EGP
Sbjct: 368  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 427

Query: 1946 LIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIGE 1767
            LI LCY LGVEDLELLS EELH PNS+L+IFNGLILGKHRRP+ FA+ MRKLRRAGKIGE
Sbjct: 428  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 487

Query: 1766 FVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGLI 1587
            FVS+FVNEKQRCVYIASDGGRVCRPLVIADKG+SRIKEHHMKEL DGVRSF  FL+EGLI
Sbjct: 488  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLI 547

Query: 1586 EYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMG 1407
            EYLDVNEENNALIALYE +A  +TTHIEIEPFTILGV AGLIPYPHHNQSPRNTYQCAMG
Sbjct: 548  EYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 607

Query: 1406 KQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGYD 1227
            KQAMGNIA+NQLCRMD+L+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGYD
Sbjct: 608  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 667

Query: 1226 IEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDDG 1047
            IEDAIVMNKSSLDRGFGRCIV+KK +A+ QKY N TSDRI+ P R G GAE MQILDDDG
Sbjct: 668  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDG 727

Query: 1046 LAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDRV 867
            LAAPGEII+P D+YINK++P++T+  G   +     DS+Y+S++QTYKGP+GET VVDRV
Sbjct: 728  LAAPGEIIKPNDVYINKESPLETR--GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 785

Query: 866  ALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLIM 687
            ALCSD+N ++C+KF+IRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERG+CPDLIM
Sbjct: 786  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 845

Query: 686  NPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            NPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 846  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 881



 Score =  286 bits (733), Expect = 3e-74
 Identities = 135/153 (88%), Positives = 145/153 (94%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKD IYSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARG+GPRVM+TRQPTEGR+RNGG
Sbjct: 906  GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 965

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML++ERLM+SSDPFEVQVCR CGLLGYY+ KLK GICS CKNG
Sbjct: 966  LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1025

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DN+S+MKLPYACKLL QELQSMN+VPRLKL EA
Sbjct: 1026 DNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1058


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score = 1399 bits (3620), Expect = 0.0
 Identities = 686/876 (78%), Positives = 769/876 (87%), Gaps = 1/876 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E L+P  CRL D TYAAP+ VNIEY+ G+   K    K DV+IGR+PIMLRSC CVLYGK
Sbjct: 99   EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGK 158

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYFIIKGTEKV+L+QEQLSKNR+IID DKKG + A         
Sbjct: 159  DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETV 218

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEK K+YL L+QF KKIPIM+V+KAMG+ESDQEVVQM+GRDPRYS LLLPSIE
Sbjct: 219  KSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESDQEVVQMVGRDPRYSALLLPSIE 278

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ +ALEYLE KV+R    + P ++EGRA +ILRD FLAN+PVH NNFRPKC
Sbjct: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
             YVAVMLRRM+EA+LNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  + ++++
Sbjct: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDII 398

Query: 2306 LSRLSRSNRFDISQLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLG 2127
            LS+ SRS+RFD+SQ I  +SIT GLERTLSTGNFD+KRFKMHRKGMTQ +ARLS+I TLG
Sbjct: 399  LSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLG 458

Query: 2126 FMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGP 1947
             MT++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+EGP
Sbjct: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518

Query: 1946 LIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIGE 1767
            LI LCY LGVEDLELLS EELH PNS+L+IFNGLILGKHRRP+ FA+ MRKLRRAGKIGE
Sbjct: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578

Query: 1766 FVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGLI 1587
            FVS+FVNEKQRCVYIASDGGRVCRPLVIADKG+SRIKEHHMKEL DGVRSF  FL+EGLI
Sbjct: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLI 638

Query: 1586 EYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMG 1407
            EYLDVNEENNALIALYE +A  +TTHIEIEPFTILGV AGLIPYPHHNQSPRNTYQCAMG
Sbjct: 639  EYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698

Query: 1406 KQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGYD 1227
            KQAMGNIA+NQLCRMD+L+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGYD
Sbjct: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758

Query: 1226 IEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDDG 1047
            IEDAIVMNKSSLDRGFGRCIV+KK +A+ QKY N TSDRI+ P R G GAE MQILDDDG
Sbjct: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDG 818

Query: 1046 LAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDRV 867
            LAAPGEII+P D+YINK++P++T+  G   +     DS+Y+S++QTYKGP+GET VVDRV
Sbjct: 819  LAAPGEIIKPNDVYINKESPLETR--GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 876

Query: 866  ALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLIM 687
            ALCSD+N ++C+KF+IRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERG+CPDLIM
Sbjct: 877  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 936

Query: 686  NPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            NPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 937  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972



 Score =  286 bits (733), Expect = 3e-74
 Identities = 135/153 (88%), Positives = 145/153 (94%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKD IYSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARG+GPRVM+TRQPTEGR+RNGG
Sbjct: 997  GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML++ERLM+SSDPFEVQVCR CGLLGYY+ KLK GICS CKNG
Sbjct: 1057 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1116

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DN+S+MKLPYACKLL QELQSMN+VPRLKL EA
Sbjct: 1117 DNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1149


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score = 1398 bits (3619), Expect = 0.0
 Identities = 692/879 (78%), Positives = 768/879 (87%), Gaps = 4/879 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E L+P  CRL D TYAAP+ VNIEY+ G+   K    K DV+IGR+PIMLRSCCCVLY K
Sbjct: 89   EKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTRVEKNDVVIGRMPIMLRSCCCVLYKK 148

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYF++KGTEKVIL+QEQLSKNRIIID DKKG + A         
Sbjct: 149  DEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEST 208

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                   MEKEKI+L L+QFT KIPIMIV+KAMGMESDQEVVQM+GR+PRYS LLLPS+E
Sbjct: 209  KSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGMESDQEVVQMVGRNPRYSALLLPSME 268

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ QALE+LE KV++    N   EKEGR + ILRDTF+AN+PV +NNFRPKC
Sbjct: 269  ECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEGRGMAILRDTFIANVPVRQNNFRPKC 328

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
            +YVAVMLRRMM+AILNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  + ++ +
Sbjct: 329  LYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMISEVKKTIDAI 388

Query: 2306 LSRLSRSNRFDISQ---LIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIA 2136
            L++ SRS+RFD SQ    I  +SIT GLERTLSTGN+D+KRF+MHRKGM+Q VARLSYI 
Sbjct: 389  LAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTGNWDVKRFRMHRKGMSQVVARLSYIG 448

Query: 2135 TLGFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDED 1956
            +LG MTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+
Sbjct: 449  SLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 508

Query: 1955 EGPLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGK 1776
            E PLI LCY+LGVEDLELLS EELH PNS+LIIFNGLILGKHRRPQ+FAN++RKLRRAGK
Sbjct: 509  ESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFNGLILGKHRRPQRFANALRKLRRAGK 568

Query: 1775 IGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKE 1596
            IGEFVS+FVNEKQ CVYIASDGGRVCRP+VIADKG SRIKEHHMKEL DGVR+F  FL++
Sbjct: 569  IGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKGKSRIKEHHMKELIDGVRTFDDFLRD 628

Query: 1595 GLIEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQC 1416
            GLIEYLDVNEENNALIALYE +AK ETTHIEIEPFTILGVCAGLIP+PHHNQSPRNTYQC
Sbjct: 629  GLIEYLDVNEENNALIALYEADAKPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQC 688

Query: 1415 AMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYS 1236
            AMGKQAMGNIAYNQLCRMD+L+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYS
Sbjct: 689  AMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 748

Query: 1235 GYDIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILD 1056
            GYDIEDAIVMNKSSLDRGFGRCIVMKK SAV Q+YEN  SDRI+ P + GH AE MQILD
Sbjct: 749  GYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAERMQILD 808

Query: 1055 DDGLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVV 876
            DDGLAAPGEII+P DIYINK++P+ TK  G   + V L DS YK S+QT+KGPEGE  VV
Sbjct: 809  DDGLAAPGEIIKPNDIYINKESPIITK--GPLISPVGLPDSAYKPSRQTFKGPEGEASVV 866

Query: 875  DRVALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPD 696
            DRVALCSD+N+N+C+KF+IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERG+CPD
Sbjct: 867  DRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPD 926

Query: 695  LIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            LIMNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 927  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 965



 Score =  293 bits (751), Expect = 3e-76
 Identities = 139/153 (90%), Positives = 148/153 (96%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKDFIYSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARG+GPRVM+TRQPTEGR+RNGG
Sbjct: 990  GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1049

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML++ERLM+SSDPFEVQVCR CGLLGYY+ KLK GICS CKNG
Sbjct: 1050 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKIGICSTCKNG 1109

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DN+STMKLPYACKLLFQELQ+MNVVPRLKLTEA
Sbjct: 1110 DNISTMKLPYACKLLFQELQAMNVVPRLKLTEA 1142


>ref|XP_007010800.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
            gi|508727713|gb|EOY19610.1| DNA-directed RNA polymerase
            isoform 2 [Theobroma cacao]
          Length = 1011

 Score = 1396 bits (3614), Expect = 0.0
 Identities = 691/877 (78%), Positives = 764/877 (87%), Gaps = 2/877 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGK
Sbjct: 107  EKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGK 166

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYF+IKG EKVIL+QEQLSKNRIIID DKKG + A         
Sbjct: 167  DEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEAT 226

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEKIYL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE
Sbjct: 227  KSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIE 286

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ QALEYLE KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC
Sbjct: 287  ECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKC 346

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
            +YVAVMLRRM+EAILNKD MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++V
Sbjct: 347  LYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLV 406

Query: 2306 LSRLSRSNRFDISQLIGG-ESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATL 2130
            LS+ SRS+  D SQ +   E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TL
Sbjct: 407  LSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTL 466

Query: 2129 GFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 1950
            G+MTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG
Sbjct: 467  GYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 526

Query: 1949 PLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIG 1770
            PLI LCY LGVEDLELLS EELH PNS+L+I NGLILGKHRRPQ FA +MRKLRRAGK+G
Sbjct: 527  PLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVG 586

Query: 1769 EFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGL 1590
            EFVS+FVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKEL DGVR+F  FL++GL
Sbjct: 587  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGL 646

Query: 1589 IEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 1410
            IEYLDVNEENNALIALYE  A  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM
Sbjct: 647  IEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 706

Query: 1409 GKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGY 1230
            GKQAMGNIAYNQLCRMDTL+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGY
Sbjct: 707  GKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 766

Query: 1229 DIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDD 1050
            DIEDAIVMNKSSLDRGFGRCIVMK+ SAV QKYE G SDRI+ PQR G G+E MQILDDD
Sbjct: 767  DIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDD 826

Query: 1049 GLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDR 870
            G+A PGEIIRP DIYINK++ + T+  G   ++ +L DS Y+ ++QTYKGPEGE+ VVDR
Sbjct: 827  GIATPGEIIRPNDIYINKESSIHTR--GSRVSSESLPDSAYRPARQTYKGPEGESCVVDR 884

Query: 869  VALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLI 690
            VALC+DRN+N+ +KF+IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERG+CPDLI
Sbjct: 885  VALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLI 944

Query: 689  MNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            MNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 945  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 981


>ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508727712|gb|EOY19609.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 1396 bits (3614), Expect = 0.0
 Identities = 691/877 (78%), Positives = 764/877 (87%), Gaps = 2/877 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGK
Sbjct: 107  EKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGK 166

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYF+IKG EKVIL+QEQLSKNRIIID DKKG + A         
Sbjct: 167  DEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEAT 226

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEKIYL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE
Sbjct: 227  KSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIE 286

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ QALEYLE KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC
Sbjct: 287  ECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKC 346

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
            +YVAVMLRRM+EAILNKD MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++V
Sbjct: 347  LYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLV 406

Query: 2306 LSRLSRSNRFDISQLIGG-ESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATL 2130
            LS+ SRS+  D SQ +   E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TL
Sbjct: 407  LSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTL 466

Query: 2129 GFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 1950
            G+MTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG
Sbjct: 467  GYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 526

Query: 1949 PLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIG 1770
            PLI LCY LGVEDLELLS EELH PNS+L+I NGLILGKHRRPQ FA +MRKLRRAGK+G
Sbjct: 527  PLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVG 586

Query: 1769 EFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGL 1590
            EFVS+FVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKEL DGVR+F  FL++GL
Sbjct: 587  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGL 646

Query: 1589 IEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 1410
            IEYLDVNEENNALIALYE  A  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM
Sbjct: 647  IEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 706

Query: 1409 GKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGY 1230
            GKQAMGNIAYNQLCRMDTL+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGY
Sbjct: 707  GKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 766

Query: 1229 DIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDD 1050
            DIEDAIVMNKSSLDRGFGRCIVMK+ SAV QKYE G SDRI+ PQR G G+E MQILDDD
Sbjct: 767  DIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDD 826

Query: 1049 GLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDR 870
            G+A PGEIIRP DIYINK++ + T+  G   ++ +L DS Y+ ++QTYKGPEGE+ VVDR
Sbjct: 827  GIATPGEIIRPNDIYINKESSIHTR--GSRVSSESLPDSAYRPARQTYKGPEGESCVVDR 884

Query: 869  VALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLI 690
            VALC+DRN+N+ +KF+IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERG+CPDLI
Sbjct: 885  VALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLI 944

Query: 689  MNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            MNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 945  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 981



 Score =  297 bits (761), Expect = 2e-77
 Identities = 142/153 (92%), Positives = 148/153 (96%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKDFIYSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVM+TRQPTEGR+RNGG
Sbjct: 1006 GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGG 1065

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML++ERLMISSDPFEVQVCRKCGLLGYY  KLKTGICS CKNG
Sbjct: 1066 LRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCGLLGYYSHKLKTGICSSCKNG 1125

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DNVSTMKLPYACKLL QELQSMN+VPRLKL+EA
Sbjct: 1126 DNVSTMKLPYACKLLIQELQSMNIVPRLKLSEA 1158


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score = 1396 bits (3613), Expect = 0.0
 Identities = 702/880 (79%), Positives = 769/880 (87%), Gaps = 5/880 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E L PQ+CRL D TYAAP+YV IEY  G+     V  KK+V+IGR+PIMLRS CCVLYGK
Sbjct: 101  EKLCPQKCRLSDRTYAAPIYVTIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGK 160

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE+ELA+ GECPLDPGGYF+IKGTEKVIL+QEQLSKNRIIID DKKG VQA         
Sbjct: 161  DEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKT 220

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  KMEKEK+YL L+ F  K+PIM+V+KAMGMESDQEVVQMIGRDPR+S LLLPSIE
Sbjct: 221  KSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIE 280

Query: 2663 ECVKGSVHTQYQALEYLEN----KVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNF 2499
            EC    ++TQ+QALE+LE+    K+  Y  +T P EK  RAL+ILRD FLAN+PVH++NF
Sbjct: 281  ECADLKLYTQHQALEFLESDKMLKMPSY--STGPVEKGARALSILRDIFLANVPVHQHNF 338

Query: 2498 RPKCIYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRK 2319
            R KCIYVAVM+RRMMEAILNKD MDDKDYVGNKRLELSGQLL+LLFEDLFKTMN+EA R 
Sbjct: 339  RKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRT 398

Query: 2318 MEVVLSRLSRSNRFDISQLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYI 2139
            ++ +L+R SRS+R DISQ I  +SIT GLERTLSTGN+D+KRF+MHRKGMTQ VARLSYI
Sbjct: 399  IDTLLARPSRSSRLDISQYIVKDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYI 458

Query: 2138 ATLGFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 1959
             +LG MTKISPQFEKSRKVSGPRALQPSQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE
Sbjct: 459  GSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDE 518

Query: 1958 DEGPLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAG 1779
            DE P++ LCY LGVEDLE LS EELHMP SYLI  NGLILGKH+ PQ+FAN+MR+LRRAG
Sbjct: 519  DERPIMSLCYCLGVEDLEQLSPEELHMPTSYLITLNGLILGKHKSPQRFANAMRRLRRAG 578

Query: 1778 KIGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLK 1599
            KIGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHM+ELRDGVR F SFLK
Sbjct: 579  KIGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMRELRDGVRDFDSFLK 638

Query: 1598 EGLIEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQ 1419
            +GLIEYLDVNEENN LIALYE+ A  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQ
Sbjct: 639  DGLIEYLDVNEENNTLIALYEKEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQ 698

Query: 1418 CAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSY 1239
            CAMGKQAMGNIAYNQL RMD L+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSY
Sbjct: 699  CAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 758

Query: 1238 SGYDIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQIL 1059
            SGYDIEDAIVMNKSSLDRGFGRCIVMKK SA+ QKYENGTSDRII PQR G  A+ MQIL
Sbjct: 759  SGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYENGTSDRIIKPQRQGFEADKMQIL 818

Query: 1058 DDDGLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPV 879
            DDDG+AAPGE IR  DIYINK++P  T++     + + L DS YK+S+QTYKGPEGET V
Sbjct: 819  DDDGMAAPGETIRNHDIYINKESPTVTRT--PITSPMGLPDSAYKTSRQTYKGPEGETAV 876

Query: 878  VDRVALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCP 699
            VDRVAL SDRNNN+ +KFMIRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERG+CP
Sbjct: 877  VDRVALYSDRNNNLSIKFMIRHTRRPEIGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 936

Query: 698  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG
Sbjct: 937  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 976



 Score =  302 bits (774), Expect = 6e-79
 Identities = 144/153 (94%), Positives = 150/153 (98%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKDFIYSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARG+GPRVMMTRQPTEGRSRNGG
Sbjct: 1001 GKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGRSRNGG 1060

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML+YERLMISSDPFEVQVCRKCGLLGYY+ KLKTGICSMCKNG
Sbjct: 1061 LRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNG 1120

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            +N+STMKLPYACKLLFQELQSMN+VPRLKL EA
Sbjct: 1121 ENISTMKLPYACKLLFQELQSMNIVPRLKLAEA 1153


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score = 1394 bits (3607), Expect = 0.0
 Identities = 701/880 (79%), Positives = 768/880 (87%), Gaps = 5/880 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E L PQ+CRL D TYAAP+YV I+Y  G+     V  KK+V+IGR+PIMLRS CCVLYGK
Sbjct: 131  EKLCPQKCRLSDRTYAAPIYVTIDYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGK 190

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE+ELA+ GECPLDPGGYF+IKGTEKVIL+QEQLSKNRIIID DKKG VQA         
Sbjct: 191  DEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKT 250

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  KMEKEK+YL L+ F  K+PIM+V+KAMGMESDQEVVQMIGRDPR+S LLLPSIE
Sbjct: 251  KSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIE 310

Query: 2663 ECVKGSVHTQYQALEYLEN----KVQRYQNNTRP-EKEGRALNILRDTFLANIPVHENNF 2499
            EC    ++TQ QALE+LE+    K+  Y  +T P EK  RAL+ILRD FLAN+PVH++NF
Sbjct: 311  ECADLKLYTQQQALEFLESDKMLKMPSY--STGPIEKGARALSILRDIFLANVPVHQHNF 368

Query: 2498 RPKCIYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRK 2319
            R KCIYVAVM+RRMMEAILNKD MDDKDYVGNKRLELSGQLL+LLFEDLFKTMN+EA R 
Sbjct: 369  RKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRT 428

Query: 2318 MEVVLSRLSRSNRFDISQLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYI 2139
            ++ +L+R SRS+R DISQ I  +SIT GLERTLSTGN+D+KRF+MHRKGMTQ VARLSYI
Sbjct: 429  IDTLLARPSRSSRLDISQYIIKDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYI 488

Query: 2138 ATLGFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 1959
             +LG MTKISPQFEKSRKVSGPRALQPSQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE
Sbjct: 489  GSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDE 548

Query: 1958 DEGPLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAG 1779
            DE P++ LCY LGVEDLE LS EELHMP SYLI  NGLILGKH+ PQ+FAN+MR+LRRAG
Sbjct: 549  DERPIMSLCYCLGVEDLEQLSPEELHMPTSYLITLNGLILGKHKSPQRFANAMRRLRRAG 608

Query: 1778 KIGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLK 1599
            K+GEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHM+ELRDG+R F SFLK
Sbjct: 609  KVGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMRELRDGLRDFDSFLK 668

Query: 1598 EGLIEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQ 1419
            +GLIEYLDVNEENN LIALYE+ A  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQ
Sbjct: 669  DGLIEYLDVNEENNTLIALYEKEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQ 728

Query: 1418 CAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSY 1239
            CAMGKQAMGNIAYNQL RMD L+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSY
Sbjct: 729  CAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 788

Query: 1238 SGYDIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQIL 1059
            SGYDIEDAIVMNKSSLDRGFGRCIVMKK SA+ QKYENGTSDRII PQR G  A+ MQIL
Sbjct: 789  SGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYENGTSDRIIKPQRQGPEADRMQIL 848

Query: 1058 DDDGLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPV 879
            DDDG+AAPGE IR  DIYINK++P  T++     + + L DS YKSSKQTYKGPEGET V
Sbjct: 849  DDDGMAAPGETIRNHDIYINKESPTVTRT--PVTSPMGLPDSAYKSSKQTYKGPEGETAV 906

Query: 878  VDRVALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCP 699
            VDRVAL SDRNNN+ +KFMIRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERG+CP
Sbjct: 907  VDRVALYSDRNNNLSIKFMIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 966

Query: 698  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG
Sbjct: 967  DLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 1006



 Score =  301 bits (771), Expect = 1e-78
 Identities = 143/153 (93%), Positives = 150/153 (98%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKDFIYSGITG PLQAYIFMGPIYYQKLKHMV+DKMHARG+GPRVMMTRQPTEGRSRNGG
Sbjct: 1031 GKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVVDKMHARGSGPRVMMTRQPTEGRSRNGG 1090

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML+YERLMISSDPFEVQVCRKCGLLGYY+ KLKTGICSMCKNG
Sbjct: 1091 LRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNG 1150

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            +N+STMKLPYACKLLFQELQSMN+VPRLKL EA
Sbjct: 1151 ENISTMKLPYACKLLFQELQSMNIVPRLKLAEA 1183


>ref|XP_007010805.1| DNA-directed RNA polymerase isoform 7 [Theobroma cacao]
            gi|508727718|gb|EOY19615.1| DNA-directed RNA polymerase
            isoform 7 [Theobroma cacao]
          Length = 1082

 Score = 1385 bits (3584), Expect = 0.0
 Identities = 692/900 (76%), Positives = 765/900 (85%), Gaps = 25/900 (2%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGK
Sbjct: 8    EKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGK 67

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYF+IKG EKVIL+QEQLSKNRIIID DKKG + A         
Sbjct: 68   DEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEAT 127

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEKIYL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE
Sbjct: 128  KSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIE 187

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ QALEYLE KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC
Sbjct: 188  ECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKC 247

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
            +YVAVMLRRM+EAILNKD MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++V
Sbjct: 248  LYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLV 307

Query: 2306 LSRLSRSNRFDISQLIGG-ESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATL 2130
            LS+ SRS+  D SQ +   E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TL
Sbjct: 308  LSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTL 367

Query: 2129 GFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 1950
            G+MTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG
Sbjct: 368  GYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 427

Query: 1949 PLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIG 1770
            PLI LCY LGVEDLELLS EELH PNS+L+I NGLILGKHRRPQ FA +MRKLRRAGK+G
Sbjct: 428  PLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVG 487

Query: 1769 EFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGL 1590
            EFVS+FVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKEL DGVR+F  FL++GL
Sbjct: 488  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGL 547

Query: 1589 IEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 1410
            IEYLDVNEENNALIALYE  A  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM
Sbjct: 548  IEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 607

Query: 1409 GKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVS-------------------- 1290
            GKQAMGNIAYNQLCRMDTL+YLLVYPQRPLLTTRTIELVS                    
Sbjct: 608  GKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVSGLYVVDYSTPFCPVNCLLCF 667

Query: 1289 ---YDKLGAGQNASVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGT 1119
               YDKLGAGQNA+VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SAV QKYE G 
Sbjct: 668  QVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGA 727

Query: 1118 SDRIIGPQRDGHGAEHMQILDDDGLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALK 939
            SDRI+ PQR G G+E MQILDDDG+A PGEIIRP DIYINK++ + T+  G   ++ +L 
Sbjct: 728  SDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTR--GSRVSSESLP 785

Query: 938  DSQYKSSKQTYKGPEGETPVVDRVALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKG 759
            DS Y+ ++QTYKGPEGE+ VVDRVALC+DRN+N+ +KF+IRHTRRPEVGDKFSSRHGQKG
Sbjct: 786  DSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKG 845

Query: 758  VCGTIVQQEDFPFSERGVCPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            VCGTI+QQEDFPFSERG+CPDLIMNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 846  VCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 905



 Score =  297 bits (761), Expect = 2e-77
 Identities = 142/153 (92%), Positives = 148/153 (96%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKDFIYSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVM+TRQPTEGR+RNGG
Sbjct: 930  GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGG 989

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML++ERLMISSDPFEVQVCRKCGLLGYY  KLKTGICS CKNG
Sbjct: 990  LRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCGLLGYYSHKLKTGICSSCKNG 1049

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DNVSTMKLPYACKLL QELQSMN+VPRLKL+EA
Sbjct: 1050 DNVSTMKLPYACKLLIQELQSMNIVPRLKLSEA 1082


>ref|XP_007010804.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
            gi|508727717|gb|EOY19614.1| DNA-directed RNA polymerase
            isoform 6 [Theobroma cacao]
          Length = 1034

 Score = 1385 bits (3584), Expect = 0.0
 Identities = 692/900 (76%), Positives = 765/900 (85%), Gaps = 25/900 (2%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGK
Sbjct: 107  EKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGK 166

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYF+IKG EKVIL+QEQLSKNRIIID DKKG + A         
Sbjct: 167  DEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEAT 226

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEKIYL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE
Sbjct: 227  KSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIE 286

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ QALEYLE KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC
Sbjct: 287  ECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKC 346

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
            +YVAVMLRRM+EAILNKD MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++V
Sbjct: 347  LYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLV 406

Query: 2306 LSRLSRSNRFDISQLIGG-ESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATL 2130
            LS+ SRS+  D SQ +   E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TL
Sbjct: 407  LSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTL 466

Query: 2129 GFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 1950
            G+MTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG
Sbjct: 467  GYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 526

Query: 1949 PLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIG 1770
            PLI LCY LGVEDLELLS EELH PNS+L+I NGLILGKHRRPQ FA +MRKLRRAGK+G
Sbjct: 527  PLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVG 586

Query: 1769 EFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGL 1590
            EFVS+FVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKEL DGVR+F  FL++GL
Sbjct: 587  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGL 646

Query: 1589 IEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 1410
            IEYLDVNEENNALIALYE  A  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM
Sbjct: 647  IEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 706

Query: 1409 GKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVS-------------------- 1290
            GKQAMGNIAYNQLCRMDTL+YLLVYPQRPLLTTRTIELVS                    
Sbjct: 707  GKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVSGLYVVDYSTPFCPVNCLLCF 766

Query: 1289 ---YDKLGAGQNASVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGT 1119
               YDKLGAGQNA+VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SAV QKYE G 
Sbjct: 767  QVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGA 826

Query: 1118 SDRIIGPQRDGHGAEHMQILDDDGLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALK 939
            SDRI+ PQR G G+E MQILDDDG+A PGEIIRP DIYINK++ + T+  G   ++ +L 
Sbjct: 827  SDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTR--GSRVSSESLP 884

Query: 938  DSQYKSSKQTYKGPEGETPVVDRVALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKG 759
            DS Y+ ++QTYKGPEGE+ VVDRVALC+DRN+N+ +KF+IRHTRRPEVGDKFSSRHGQKG
Sbjct: 885  DSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKG 944

Query: 758  VCGTIVQQEDFPFSERGVCPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            VCGTI+QQEDFPFSERG+CPDLIMNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 945  VCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 1004


>ref|XP_007010803.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao]
            gi|508727716|gb|EOY19613.1| DNA-directed RNA polymerase
            isoform 5 [Theobroma cacao]
          Length = 1006

 Score = 1383 bits (3580), Expect = 0.0
 Identities = 687/877 (78%), Positives = 759/877 (86%), Gaps = 2/877 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGK
Sbjct: 107  EKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGK 166

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYF+IKG EK     EQLSKNRIIID DKKG + A         
Sbjct: 167  DEAELARLGECPLDPGGYFVIKGAEK-----EQLSKNRIIIDADKKGNINASVTSSSEAT 221

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEKIYL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE
Sbjct: 222  KSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIE 281

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ QALEYLE KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC
Sbjct: 282  ECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKC 341

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
            +YVAVMLRRM+EAILNKD MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++V
Sbjct: 342  LYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLV 401

Query: 2306 LSRLSRSNRFDISQLIGG-ESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATL 2130
            LS+ SRS+  D SQ +   E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TL
Sbjct: 402  LSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTL 461

Query: 2129 GFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 1950
            G+MTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG
Sbjct: 462  GYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 521

Query: 1949 PLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIG 1770
            PLI LCY LGVEDLELLS EELH PNS+L+I NGLILGKHRRPQ FA +MRKLRRAGK+G
Sbjct: 522  PLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVG 581

Query: 1769 EFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGL 1590
            EFVS+FVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKEL DGVR+F  FL++GL
Sbjct: 582  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGL 641

Query: 1589 IEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 1410
            IEYLDVNEENNALIALYE  A  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM
Sbjct: 642  IEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 701

Query: 1409 GKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGY 1230
            GKQAMGNIAYNQLCRMDTL+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGY
Sbjct: 702  GKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 761

Query: 1229 DIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDD 1050
            DIEDAIVMNKSSLDRGFGRCIVMK+ SAV QKYE G SDRI+ PQR G G+E MQILDDD
Sbjct: 762  DIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDD 821

Query: 1049 GLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDR 870
            G+A PGEIIRP DIYINK++ + T+  G   ++ +L DS Y+ ++QTYKGPEGE+ VVDR
Sbjct: 822  GIATPGEIIRPNDIYINKESSIHTR--GSRVSSESLPDSAYRPARQTYKGPEGESCVVDR 879

Query: 869  VALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLI 690
            VALC+DRN+N+ +KF+IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERG+CPDLI
Sbjct: 880  VALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLI 939

Query: 689  MNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            MNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 940  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 976


>ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508727714|gb|EOY19611.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1153

 Score = 1383 bits (3580), Expect = 0.0
 Identities = 687/877 (78%), Positives = 759/877 (86%), Gaps = 2/877 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP++VNIEY+ G+   K    K D++IGR+PIMLRSCCCVLYGK
Sbjct: 107  EKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGK 166

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYF+IKG EK     EQLSKNRIIID DKKG + A         
Sbjct: 167  DEAELARLGECPLDPGGYFVIKGAEK-----EQLSKNRIIIDADKKGNINASVTSSSEAT 221

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEKIYL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE
Sbjct: 222  KSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIE 281

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    ++TQ QALEYLE KV+R        EKEGRAL+ILRD FLAN+PV  NNFRPKC
Sbjct: 282  ECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKC 341

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
            +YVAVMLRRM+EAILNKD MDDKDYVGNKRLELSGQL++LLFEDLFKT   E  + +++V
Sbjct: 342  LYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQKMIDLV 401

Query: 2306 LSRLSRSNRFDISQLIGG-ESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATL 2130
            LS+ SRS+  D SQ +   E+IT GLERTLSTGNFDIKRFKMHRKGMTQ +ARLS+I TL
Sbjct: 402  LSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLARLSFIGTL 461

Query: 2129 GFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 1950
            G+MTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG
Sbjct: 462  GYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 521

Query: 1949 PLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIG 1770
            PLI LCY LGVEDLELLS EELH PNS+L+I NGLILGKHRRPQ FA +MRKLRRAGK+G
Sbjct: 522  PLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKLRRAGKVG 581

Query: 1769 EFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGL 1590
            EFVS+FVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKEL DGVR+F  FL++GL
Sbjct: 582  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFDDFLRDGL 641

Query: 1589 IEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 1410
            IEYLDVNEENNALIALYE  A  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM
Sbjct: 642  IEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 701

Query: 1409 GKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGY 1230
            GKQAMGNIAYNQLCRMDTL+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGY
Sbjct: 702  GKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 761

Query: 1229 DIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDD 1050
            DIEDAIVMNKSSLDRGFGRCIVMK+ SAV QKYE G SDRI+ PQR G G+E MQILDDD
Sbjct: 762  DIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDD 821

Query: 1049 GLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDR 870
            G+A PGEIIRP DIYINK++ + T+  G   ++ +L DS Y+ ++QTYKGPEGE+ VVDR
Sbjct: 822  GIATPGEIIRPNDIYINKESSIHTR--GSRVSSESLPDSAYRPARQTYKGPEGESCVVDR 879

Query: 869  VALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLI 690
            VALC+DRN+N+ +KF+IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERG+CPDLI
Sbjct: 880  VALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLI 939

Query: 689  MNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            MNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 940  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 976



 Score =  297 bits (761), Expect = 2e-77
 Identities = 142/153 (92%), Positives = 148/153 (96%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKDFIYSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVM+TRQPTEGR+RNGG
Sbjct: 1001 GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGG 1060

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML++ERLMISSDPFEVQVCRKCGLLGYY  KLKTGICS CKNG
Sbjct: 1061 LRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRKCGLLGYYSHKLKTGICSSCKNG 1120

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DNVSTMKLPYACKLL QELQSMN+VPRLKL+EA
Sbjct: 1121 DNVSTMKLPYACKLLIQELQSMNIVPRLKLSEA 1153


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1371 bits (3549), Expect = 0.0
 Identities = 678/875 (77%), Positives = 756/875 (86%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E LSP  CRL D TYAAP+ VN+EY+ G+ D K    K DV+IGR+PIMLRS  CVLYGK
Sbjct: 105  EQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGK 164

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE ELA+ GECPLDPGGYF+IKGTEKVIL+QEQLSKNRIIID DKKG + A         
Sbjct: 165  DEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEAT 224

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEK+YL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE
Sbjct: 225  KSKTIIQMEKEKMYLCLNQFVKKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIE 284

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCI 2484
            EC   S++TQ +ALEYL+ K            E RAL ILRD FLAN+PVH+NNFRPKC+
Sbjct: 285  ECAGLSIYTQQKALEYLDGK------------ENRALTILRDVFLANVPVHKNNFRPKCL 332

Query: 2483 YVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVL 2304
            YVAVMLRRMMEA+LNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  R ++ VL
Sbjct: 333  YVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVL 392

Query: 2303 SRLSRSNRFDISQLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGF 2124
            ++ +RS+RFD++Q I  ++ITNGLERTLSTGNFD+KRFKMHRKGMTQ + RLSYIA+LG 
Sbjct: 393  TKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMTQVLVRLSYIASLGM 452

Query: 2123 MTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGPL 1944
            MT++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD++EGPL
Sbjct: 453  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDEEGPL 512

Query: 1943 IFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIGEF 1764
            I LCY LGVEDLELLS EELH PNS+L+IFNGLILGKHRRPQ F NSMRKLRRAGKIGEF
Sbjct: 513  ISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQYFVNSMRKLRRAGKIGEF 572

Query: 1763 VSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGLIE 1584
            VS+FVNEKQR VY+ASDGGRVCRPLVIAD+GVSRIKEHHMKELRDGVR+F  FL++GLIE
Sbjct: 573  VSVFVNEKQRAVYLASDGGRVCRPLVIADRGVSRIKEHHMKELRDGVRTFDDFLRDGLIE 632

Query: 1583 YLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGK 1404
            YLDVNEENNAL+ALYE  A  ETTHIEIEPFTILGVCAGLIP+PHHNQSPRNTYQCAMGK
Sbjct: 633  YLDVNEENNALVALYEGEATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGK 692

Query: 1403 QAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGYDI 1224
            QAMGNIAYNQL RMD+L+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGYDI
Sbjct: 693  QAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 752

Query: 1223 EDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDDGL 1044
            EDAIVMNK+SLDRGFGRCIVMKK  A+ QKYENG SDRI+ P R     E  ++LD DGL
Sbjct: 753  EDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGASDRILRPDRT---VERERVLDYDGL 809

Query: 1043 AAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDRVA 864
            AAPGEII+P DIY+ K+ P+DT   G   ++ AL++ +Y+ S  +YKGPEGE+PV+DRVA
Sbjct: 810  AAPGEIIKPSDIYVKKECPIDTM--GPVKSSAALENIKYRPSPLSYKGPEGESPVIDRVA 867

Query: 863  LCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLIMN 684
            L SDRNNN+C+K MIRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERG+CPDLIMN
Sbjct: 868  LSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMN 927

Query: 683  PHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            PHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 928  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 962



 Score =  288 bits (738), Expect = 9e-75
 Identities = 136/153 (88%), Positives = 146/153 (95%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKD IYSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVM+TRQPTEGR+RNGG
Sbjct: 987  GKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGG 1046

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML++ERLMISSDPFEVQVCR CGLLGY+++KL+ GICS CKNG
Sbjct: 1047 LRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRVCGLLGYFNQKLRAGICSTCKNG 1106

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DN+STMKLPYACKLL QELQSMN+VPRLKL EA
Sbjct: 1107 DNISTMKLPYACKLLIQELQSMNIVPRLKLAEA 1139


>ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1035

 Score = 1360 bits (3519), Expect = 0.0
 Identities = 672/877 (76%), Positives = 756/877 (86%), Gaps = 2/877 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL DTTYAAP+ VNIEY++G+   K   IK DV+IGR+PIMLRSCCCVLYGK
Sbjct: 103  EQITPHMCRLSDTTYAAPILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGK 162

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            +E ELA+ GECPLDPGGYF++KGTEKVIL+QEQLSKNRIIID DKKG + A         
Sbjct: 163  NEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEAT 222

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                   MEKEK+YL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE
Sbjct: 223  KSKTVILMEKEKMYLCLNQFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIE 282

Query: 2663 ECVKGSVHTQYQALEYLENKVQR--YQNNTRPEKEGRALNILRDTFLANIPVHENNFRPK 2490
            EC    V+TQ QALEYLE  V+R  Y +++  ++E RAL ILRD F+AN+PV +NNFRPK
Sbjct: 283  ECASHGVYTQQQALEYLEAMVKRSTYSSSSTEKQENRALAILRDVFIANVPVRKNNFRPK 342

Query: 2489 CIYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEV 2310
            CIYVAVMLRRMMEA+LNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  +  + 
Sbjct: 343  CIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKTADT 402

Query: 2309 VLSRLSRSNRFDISQLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATL 2130
            +L + +RS+RFD SQ I  +SITNGLER LSTGN+D+KRF+M+RKG+TQ + RLSY+A+L
Sbjct: 403  LLVKQNRSSRFDFSQYIVRDSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASL 462

Query: 2129 GFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEG 1950
            G MT+ISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+E 
Sbjct: 463  GHMTRISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEES 522

Query: 1949 PLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIG 1770
            PLI LC  LGVEDLELLS EELH PNS+L+IFNGLILGKHRRPQ+FAN+MRKLRRAGKIG
Sbjct: 523  PLISLCKCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQQFANAMRKLRRAGKIG 582

Query: 1769 EFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGL 1590
            EFVS+FVNEKQR VYIASDGGRVCRPLVIADKGVSRIKEHHM+EL DG R+F  FL EGL
Sbjct: 583  EFVSVFVNEKQRAVYIASDGGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFLHEGL 642

Query: 1589 IEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM 1410
            IEYLDVNEENNALIALYE  A  ETTHIEIEPFTILGV AGLIPYPHHNQSPRNTYQCAM
Sbjct: 643  IEYLDVNEENNALIALYEWEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAM 702

Query: 1409 GKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGY 1230
            GKQAMGNIAYNQ  RMD+L+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGY
Sbjct: 703  GKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 762

Query: 1229 DIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDD 1050
            DIEDAIVMNK+SLDRGFGRCIV+KK +   QKYENG SDRI+ P+++    E  ++LDDD
Sbjct: 763  DIEDAIVMNKASLDRGFGRCIVLKKYTCTNQKYENGASDRILRPRKN---EERERVLDDD 819

Query: 1049 GLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDR 870
            GLAAPGEIIR  DIYINK++P++T+  G   +  AL D +Y+   Q +KG EGE+ VVDR
Sbjct: 820  GLAAPGEIIRHGDIYINKESPIETR--GPLKSAAALADVKYRPCAQIFKGTEGESCVVDR 877

Query: 869  VALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLI 690
            VALCSD+NNN+C+K+ IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERG+CPDLI
Sbjct: 878  VALCSDKNNNLCIKYKIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLI 937

Query: 689  MNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            MNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 938  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 974



 Score = 66.2 bits (160), Expect = 9e-08
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHM 424
            GKDFIYSGITG PLQAYIFMGPIYYQKLKHM
Sbjct: 1005 GKDFIYSGITGCPLQAYIFMGPIYYQKLKHM 1035


>ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1034

 Score = 1359 bits (3518), Expect = 0.0
 Identities = 673/876 (76%), Positives = 755/876 (86%), Gaps = 1/876 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL DTTYAAP+ VNIEY++G+   K   IK DV+IGR+PIMLRSCCCVLYGK
Sbjct: 103  EQITPHMCRLSDTTYAAPILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGK 162

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            +E ELA+ GECPLDPGGYF++KGTEKVIL+QEQLSKNRIIID DKKG + A         
Sbjct: 163  NEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEAT 222

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                   MEKEK+YL L+QF KKIPIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE
Sbjct: 223  KSKTVILMEKEKMYLCLNQFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIE 282

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQ-NNTRPEKEGRALNILRDTFLANIPVHENNFRPKC 2487
            EC    V+TQ QALEYLE  V+R   +++  EKE RAL ILRD F+AN+PV +NNFRPKC
Sbjct: 283  ECASHGVYTQQQALEYLEAMVKRSTYSSSSTEKENRALAILRDVFIANVPVRKNNFRPKC 342

Query: 2486 IYVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVV 2307
            IYVAVMLRRMMEA+LNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  E  +  + +
Sbjct: 343  IYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKTADTL 402

Query: 2306 LSRLSRSNRFDISQLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLG 2127
            L + +RS+RFD SQ I  +SITNGLER LSTGN+D+KRF+M+RKG+TQ + RLSY+A+LG
Sbjct: 403  LVKQNRSSRFDFSQYIVRDSITNGLERALSTGNWDVKRFRMNRKGVTQVLVRLSYMASLG 462

Query: 2126 FMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGP 1947
             MT+ISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+E P
Sbjct: 463  HMTRISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESP 522

Query: 1946 LIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIGE 1767
            LI LC  LGVEDLELLS EELH PNS+L+IFNGLILGKHRRPQ+FAN+MRKLRRAGKIGE
Sbjct: 523  LISLCKCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQQFANAMRKLRRAGKIGE 582

Query: 1766 FVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGLI 1587
            FVS+FVNEKQR VYIASDGGRVCRPLVIADKGVSRIKEHHM+EL DG R+F  FL EGLI
Sbjct: 583  FVSVFVNEKQRAVYIASDGGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFLHEGLI 642

Query: 1586 EYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMG 1407
            EYLDVNEENNALIALYE  A  ETTHIEIEPFTILGV AGLIPYPHHNQSPRNTYQCAMG
Sbjct: 643  EYLDVNEENNALIALYEWEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMG 702

Query: 1406 KQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSGYD 1227
            KQAMGNIAYNQ  RMD+L+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMSYSGYD
Sbjct: 703  KQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 762

Query: 1226 IEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDDDG 1047
            IEDAIVMNK+SLDRGFGRCIV+KK +   QKYENG SDRI+ P+++    E  ++LDDDG
Sbjct: 763  IEDAIVMNKASLDRGFGRCIVLKKYTCTNQKYENGASDRILRPRKN---EERERVLDDDG 819

Query: 1046 LAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVDRV 867
            LAAPGEIIR  DIYINK++P++T+  G   +  AL D +Y+   Q +KG EGE+ VVDRV
Sbjct: 820  LAAPGEIIRHGDIYINKESPIETR--GPLKSAAALADVKYRPCAQIFKGTEGESCVVDRV 877

Query: 866  ALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDLIM 687
            ALCSD+NNN+C+K+ IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERG+CPDLIM
Sbjct: 878  ALCSDKNNNLCIKYKIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIM 937

Query: 686  NPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            NPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFG
Sbjct: 938  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 973



 Score = 66.2 bits (160), Expect = 9e-08
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHM 424
            GKDFIYSGITG PLQAYIFMGPIYYQKLKHM
Sbjct: 1004 GKDFIYSGITGCPLQAYIFMGPIYYQKLKHM 1034


>ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Capsella rubella]
            gi|482548616|gb|EOA12810.1| hypothetical protein
            CARUB_v10025768mg [Capsella rubella]
          Length = 1160

 Score = 1359 bits (3517), Expect = 0.0
 Identities = 663/888 (74%), Positives = 767/888 (86%), Gaps = 13/888 (1%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP++VNIEY++G+   K+   K +VLIGR+PIMLRSC CVL GK
Sbjct: 100  EQINPHMCRLADMTYAAPIHVNIEYVHGSHGEKQTSAKNNVLIGRMPIMLRSCRCVLNGK 159

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DE+ELA+ GECPLDPGGYF+IKGTEKV+L+QEQLSKNRIIID DKKG + A         
Sbjct: 160  DEDELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMT 219

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKE+IYL LHQF KKIPI+IVLKAMGMESDQE+VQM+GRDPR+S  LLPSIE
Sbjct: 220  KSKTVIQMEKERIYLFLHQFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIE 279

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCI 2484
            ECV   V+TQ QAL+YLE KV++       +K+GRAL ILRD FLA++PV +NNFR KC 
Sbjct: 280  ECVSEGVNTQKQALDYLEAKVKKTSYGPPLQKDGRALYILRDLFLAHVPVRDNNFRQKCF 339

Query: 2483 YVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVL 2304
            YV VMLRRM+EA+LNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  EA +K++V+L
Sbjct: 340  YVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEAIKKVDVIL 399

Query: 2303 SRLSRSNRFDISQLIGGESITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIATLGF 2124
            ++ +R++RFD SQ + G+ I+ GLERTLSTGNFDIKRF+MHRKGMTQ + RLS+I +LGF
Sbjct: 400  TKQNRASRFDFSQCLSGDIISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSLGF 459

Query: 2123 MTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEGPL 1944
            +TKISPQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDE+EGPL
Sbjct: 460  ITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPL 519

Query: 1943 IFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKIGEF 1764
            + +CY LGV DLE+LSAEELH P+S+L+I NGLILGKHRRPQ FANS+R+LRRAGKIGEF
Sbjct: 520  VAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHRRPQYFANSLRRLRRAGKIGEF 579

Query: 1763 VSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEGLIE 1584
            VS+F NEKQ CVY+ASDGGRVCRPLVIADKG+SR+K+HHMKEL+DGVR+F  F+++GLIE
Sbjct: 580  VSVFTNEKQHCVYVASDGGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIE 639

Query: 1583 YLDVNEENNALIALYEENA-------------KEETTHIEIEPFTILGVCAGLIPYPHHN 1443
            YLDVNEENNALIALYE +A             + +TTHIEIEPFTILGV AGLIPYPHHN
Sbjct: 640  YLDVNEENNALIALYESDATTELDEGGEAAKIRADTTHIEIEPFTILGVVAGLIPYPHHN 699

Query: 1442 QSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQN 1263
            QSPRNTYQCAMGKQAMGNIAYNQL RMDTL+YLLVYPQRPLLTTRTIELV YDKLGAGQN
Sbjct: 700  QSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 759

Query: 1262 ASVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGH 1083
            A+VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKK  A  QKY+N T DRI+ PQR G 
Sbjct: 760  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVATSQKYDNNTQDRILRPQRTGP 819

Query: 1082 GAEHMQILDDDGLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYK 903
             AE MQILD+DG+A+PGEIIRP D+YINKQ+P+DTK+      T  L DSQY+ +++ +K
Sbjct: 820  DAEKMQILDNDGIASPGEIIRPNDVYINKQSPVDTKN----KMTTQLSDSQYRPAREYFK 875

Query: 902  GPEGETPVVDRVALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFP 723
            GPEGET VVDRVALCS++++++C+K++IRHTRRPE+GDKFSSRHGQKGVCGTI+QQEDFP
Sbjct: 876  GPEGETQVVDRVALCSNKHDHLCIKYIIRHTRRPELGDKFSSRHGQKGVCGTIIQQEDFP 935

Query: 722  FSERGVCPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            FSE G+CPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG
Sbjct: 936  FSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 983



 Score =  286 bits (733), Expect = 3e-74
 Identities = 135/153 (88%), Positives = 144/153 (94%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKD +YSGI+GEPLQAYIFMGPIYYQKLKHMVLDKMHARG+GPRVMMTRQPTEG+S+NGG
Sbjct: 1008 GKDLLYSGISGEPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGG 1067

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML+YERLM+SSDPFEVQVCR CGLLGYY  KLK   CS CKNG
Sbjct: 1068 LRVGEMERDCLIAYGASMLIYERLMVSSDPFEVQVCRACGLLGYYSYKLKKAFCSTCKNG 1127

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DN++TMKLPYACKLLFQELQSMNVVPRLKL EA
Sbjct: 1128 DNIATMKLPYACKLLFQELQSMNVVPRLKLIEA 1160


>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
            ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score = 1357 bits (3512), Expect = 0.0
 Identities = 672/892 (75%), Positives = 763/892 (85%), Gaps = 17/892 (1%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP+YVNIEY++G+   K   +K D +IGR+PIMLRSC CVL+GK
Sbjct: 100  EEINPHMCRLADMTYAAPIYVNIEYVHGSHGKKATSVKNDFIIGRMPIMLRSCRCVLHGK 159

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DEEELA+ GECPLDPGGYF+IKGTEKV+L+QEQLSKNRIIID DKKG + A         
Sbjct: 160  DEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMT 219

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEKIYL LHQF KKIPI+IVLKAMGMESDQE+VQM+GRDPR+S  LLPSIE
Sbjct: 220  KSKTVIQMEKEKIYLFLHQFVKKIPIVIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIE 279

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCI 2484
            ECV   V+TQ QAL+YLE KV++      PEK+GRAL ILRD FLA++PV +NNFR KC 
Sbjct: 280  ECVSEGVNTQKQALDYLEAKVKKTSYGPPPEKDGRALYILRDLFLAHVPVRDNNFRQKCF 339

Query: 2483 YVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVL 2304
            YV VMLRRM+EA+LNKD+MDDKDYVGNKRLELSGQL++LLFEDLFKTM  EA +K++ +L
Sbjct: 340  YVGVMLRRMIEAMLNKDSMDDKDYVGNKRLELSGQLMSLLFEDLFKTMLSEAIKKVDAIL 399

Query: 2303 SRLSRSNRFDISQ-LIGGES---ITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIA 2136
            S+ SR++RFD SQ L  G+S   I+ GLERTLSTGNFDIKRF+MHRKGMTQ + RLS+I 
Sbjct: 400  SKPSRASRFDFSQYLTTGDSQNTISVGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIG 459

Query: 2135 TLGFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDED 1956
            +LGF+TKISPQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDE+
Sbjct: 460  SLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEE 519

Query: 1955 EGPLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGK 1776
            EGPL+ +CY LGV DLE+LSAEELH P+S+L+I NGLILGKHRRPQ FANS+R+LRRAGK
Sbjct: 520  EGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHRRPQYFANSLRRLRRAGK 579

Query: 1775 IGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKE 1596
            IGEFVS+F NEKQ CVY+ASDGGRVCRPLVIADKG+SR+K+HHMKEL+DGVR+F  F+++
Sbjct: 580  IGEFVSVFTNEKQHCVYVASDGGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRD 639

Query: 1595 GLIEYLDVNEENNALIALYEENA-------------KEETTHIEIEPFTILGVCAGLIPY 1455
            GLIEYLDVNEENNALIALYE  A             K +TTHIEIEPFTILGV AGLIPY
Sbjct: 640  GLIEYLDVNEENNALIALYESEATTELDEGAEAAKIKADTTHIEIEPFTILGVVAGLIPY 699

Query: 1454 PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLG 1275
            PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTL+YLLVYPQRPLLTTRTIELV YDKLG
Sbjct: 700  PHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLG 759

Query: 1274 AGQNASVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQ 1095
            AGQNA+VAVMS SGYDIEDAIVMNKSSLDRGFGRCIVMKK  A  QKYENGT DRI+ PQ
Sbjct: 760  AGQNATVAVMSNSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVATCQKYENGTVDRILMPQ 819

Query: 1094 RDGHGAEHMQILDDDGLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSK 915
            R G  AE MQILDDDG+A+PGEIIRP D+YI KQ P+ T    R   T  L DSQY+ ++
Sbjct: 820  RTGPDAEKMQILDDDGIASPGEIIRPNDVYIYKQIPVCTT---RDKITSPLSDSQYRPAR 876

Query: 914  QTYKGPEGETPVVDRVALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQ 735
            + +KGPEGET VVDRVALCSD++ ++C+K++IRHTRRPE+GDKFSSRHGQKGVCGTI+QQ
Sbjct: 877  EFFKGPEGETQVVDRVALCSDKSGSLCIKYIIRHTRRPELGDKFSSRHGQKGVCGTIIQQ 936

Query: 734  EDFPFSERGVCPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            EDFPFSE G+CPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG
Sbjct: 937  EDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 988



 Score =  287 bits (735), Expect = 2e-74
 Identities = 134/153 (87%), Positives = 146/153 (95%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKD +YSG++GEPL+AYIFMGPIYYQKLKHMVLDKMHARG+GPRVMMTRQPTEG+S+NGG
Sbjct: 1013 GKDLLYSGLSGEPLEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGG 1072

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML+YERLMISSDPFEVQVCR CGLLGYY+ KLK  +CS CKNG
Sbjct: 1073 LRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCSTCKNG 1132

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DN++TMKLPYACKLLFQELQSMNVVPRLKL EA
Sbjct: 1133 DNIATMKLPYACKLLFQELQSMNVVPRLKLVEA 1165


>ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum]
            gi|557099252|gb|ESQ39616.1| hypothetical protein
            EUTSA_v10000748mg [Eutrema salsugineum]
          Length = 1164

 Score = 1351 bits (3497), Expect = 0.0
 Identities = 668/891 (74%), Positives = 761/891 (85%), Gaps = 16/891 (1%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP+YVNIEY +G+    +   K +V+IGR+PIMLRSC CVL+GK
Sbjct: 100  EEINPHMCRLADMTYAAPIYVNIEYAHGSHGKTQHSAKDNVIIGRMPIMLRSCRCVLHGK 159

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DEEELA+ GECPLDPGGYF+IKGTEKV+L+QEQLSKNRIIID DKKG + A         
Sbjct: 160  DEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMT 219

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEK KIYL LHQF KKIPI+IVLKAMGMESDQE+VQM+GRDPR+S  LLPSIE
Sbjct: 220  KSKTVIQMEKGKIYLFLHQFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIE 279

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCI 2484
            ECV   V+T+ QAL+YLE KV++      PEK+GRAL ILRD FLA++PV +NNFR KC 
Sbjct: 280  ECVSEGVNTRKQALDYLEAKVKKTSYGPPPEKDGRALYILRDVFLAHVPVRDNNFRQKCF 339

Query: 2483 YVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVL 2304
            YV VMLRRM+EA+LNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  EA +K++ +L
Sbjct: 340  YVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEAVKKVDGIL 399

Query: 2303 SRLSRSNRFDISQLIGGE---SITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIAT 2133
             + +R++RFD SQ + GE   +I+ GLERTLSTGNFDIKRF+MHRKGMTQ + RLS+I +
Sbjct: 400  QKPNRASRFDFSQCLTGEKNHNISFGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGS 459

Query: 2132 LGFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDE 1953
            LGF+TKISPQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDE+E
Sbjct: 460  LGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEE 519

Query: 1952 GPLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKI 1773
            GPL+ +CY LGV DLE+LSAEELH P+S+L+IFNGLILGKHRRPQ FANS+R+LRRAGKI
Sbjct: 520  GPLVAMCYKLGVTDLEVLSAEELHTPDSFLVIFNGLILGKHRRPQYFANSLRRLRRAGKI 579

Query: 1772 GEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEG 1593
            GEFVS+F+NEKQ CVY+ASDGGRVCRPLVIADKGVSR+K+HHMKEL+DGVR+F  F+++G
Sbjct: 580  GEFVSVFINEKQHCVYVASDGGRVCRPLVIADKGVSRVKQHHMKELQDGVRTFDDFIRDG 639

Query: 1592 LIEYLDVNEENNALIALYEENA-------------KEETTHIEIEPFTILGVCAGLIPYP 1452
            LIEYLDVNEENNALIALYE +A             +E TTHIEIEPFTILGV AGLIPYP
Sbjct: 640  LIEYLDVNEENNALIALYESDATSEMAETAEAAKIREGTTHIEIEPFTILGVVAGLIPYP 699

Query: 1451 HHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGA 1272
            HHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTL+YLLVYPQRPLLTTRTIELV YDKLGA
Sbjct: 700  HHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGA 759

Query: 1271 GQNASVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQR 1092
            GQNA+VAVMS +GYDIEDAIVMNK+SLDRGFGRCIVMKK  A  QKY N   DRI+ PQR
Sbjct: 760  GQNATVAVMSNTGYDIEDAIVMNKASLDRGFGRCIVMKKIVATCQKYGNDAVDRILRPQR 819

Query: 1091 DGHGAEHMQILDDDGLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQ 912
             G  AE MQILDDDG+AAPGEIIRP D+YINKQ P+DT    R + T  L DSQY+ +++
Sbjct: 820  TGPDAEKMQILDDDGIAAPGEIIRPNDVYINKQIPVDT----RDNITSPLSDSQYRPARE 875

Query: 911  TYKGPEGETPVVDRVALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQE 732
             +KGPEGET VVDRVALCSD+N N+C+K++IRHTRRPE+GDKFSSRHGQKGVCGTIVQQE
Sbjct: 876  YFKGPEGETQVVDRVALCSDKNGNLCIKYIIRHTRRPELGDKFSSRHGQKGVCGTIVQQE 935

Query: 731  DFPFSERGVCPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            DFPFSERG+CPDLIMNPHGFPSRMTVGKMIELLGSKAGV  GRFHYGSAFG
Sbjct: 936  DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVCSGRFHYGSAFG 986



 Score =  285 bits (730), Expect = 7e-74
 Identities = 133/153 (86%), Positives = 144/153 (94%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKD +YSG++GEPLQ Y+FMGPIYYQKLKHMVLDKMHARG+GPRVMMTRQPTEG+S+NGG
Sbjct: 1011 GKDLLYSGLSGEPLQTYVFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGG 1070

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML+YERLMISSDPFEVQVCR CGLLGYY+ KLK   CS CKNG
Sbjct: 1071 LRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRTCGLLGYYNYKLKKAFCSTCKNG 1130

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLTEA 58
            DN++TMKLPYACKLLFQELQSMNVVPRLKL EA
Sbjct: 1131 DNIATMKLPYACKLLFQELQSMNVVPRLKLVEA 1163


>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score = 1349 bits (3491), Expect = 0.0
 Identities = 662/878 (75%), Positives = 758/878 (86%), Gaps = 3/878 (0%)
 Frame = -1

Query: 3203 EGLSPQRCRLYDTTYAAPVYVNIEYMNGNFDAKRVQIKKDVLIGRLPIMLRSCCCVLYGK 3024
            E ++P  CRL D TYAAP++VNIEY++G+   K    K +V+IGR+PIMLRSC CVL+GK
Sbjct: 121  ENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGK 180

Query: 3023 DEEELAKYGECPLDPGGYFIIKGTEKVILMQEQLSKNRIIIDIDKKGCVQAXXXXXXXXX 2844
            DEEELA+ GECPLDPGGYFIIKGTEKV+L+QEQLSKNRIIID DKKG + A         
Sbjct: 181  DEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMT 240

Query: 2843 XXXXXXKMEKEKIYLTLHQFTKKIPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIE 2664
                  +MEKEKIYL LH+F KKIPI+IVLKAMGMESDQE+VQM+GRDPR+S  LLPSIE
Sbjct: 241  KSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIE 300

Query: 2663 ECVKGSVHTQYQALEYLENKVQRYQNNTRPEKEGRALNILRDTFLANIPVHENNFRPKCI 2484
            ECV   V+TQ QAL+YLE KV++    T PEK+GRAL+ILRD FLA++PV +NNFR KC 
Sbjct: 301  ECVSEGVNTQKQALDYLEAKVKKISYGTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCF 360

Query: 2483 YVAVMLRRMMEAILNKDTMDDKDYVGNKRLELSGQLLALLFEDLFKTMNEEASRKMEVVL 2304
            YV VMLRRM+EA+LNKD MDDKDYVGNKRLELSGQL++LLFEDLFKTM  EA + ++ +L
Sbjct: 361  YVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHIL 420

Query: 2303 SRLSRSNRFDISQLIGGES---ITNGLERTLSTGNFDIKRFKMHRKGMTQAVARLSYIAT 2133
            ++  R++RFD SQ +  +S   I+ GLERTLSTGNFDIKRF+MHRKGMTQ + RLS+I +
Sbjct: 421  NKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGS 480

Query: 2132 LGFMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDE 1953
            +GF+TKISPQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDE+E
Sbjct: 481  MGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEE 540

Query: 1952 GPLIFLCYTLGVEDLELLSAEELHMPNSYLIIFNGLILGKHRRPQKFANSMRKLRRAGKI 1773
            GPL+ +CY LGV DLE+LSAEELH P+S+L+I NGLILGKH RPQ FANS+R+LRRAGKI
Sbjct: 541  GPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKI 600

Query: 1772 GEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELRDGVRSFQSFLKEG 1593
            GEFVS+F NEKQ CVY+ASD GRVCRPLVIADKG+SR+K+HHMKEL+DGVR+F  F+++G
Sbjct: 601  GEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDG 660

Query: 1592 LIEYLDVNEENNALIALYEENAKEETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCA 1413
            LIEYLDVNEENNAL+ L  E AK +TTHIEIEPFTILGV AGLIPYPHHNQSPRNTYQCA
Sbjct: 661  LIEYLDVNEENNALVCLRAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCA 720

Query: 1412 MGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTRTIELVSYDKLGAGQNASVAVMSYSG 1233
            MGKQAMGNIAYNQL RMDTL+YLLVYPQRPLLTTRTIELV YDKLGAGQNA+VAVMS+SG
Sbjct: 721  MGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSG 780

Query: 1232 YDIEDAIVMNKSSLDRGFGRCIVMKKTSAVVQKYENGTSDRIIGPQRDGHGAEHMQILDD 1053
            YDIEDAIVMNKSSLDRGFGRCIVMKK  A+ QKY+N T+DRI+ PQR G  AE MQILDD
Sbjct: 781  YDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQILDD 840

Query: 1052 DGLAAPGEIIRPFDIYINKQTPMDTKSGGRAHNTVALKDSQYKSSKQTYKGPEGETPVVD 873
            DGLA PGEIIRP DIYINKQ P+DT +      T AL DSQY+ +++ +KGPEGET VVD
Sbjct: 841  DGLATPGEIIRPNDIYINKQVPVDTVT----KFTSALSDSQYRPAREYFKGPEGETQVVD 896

Query: 872  RVALCSDRNNNMCVKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGVCPDL 693
            RVALCSD+   +C+K++IRHTRRPE+GDKFSSRHGQKGVCG I+QQEDFPFSE G+CPDL
Sbjct: 897  RVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDL 956

Query: 692  IMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 579
            IMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG
Sbjct: 957  IMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFG 994



 Score =  260 bits (664), Expect = 3e-66
 Identities = 121/151 (80%), Positives = 141/151 (93%)
 Frame = -3

Query: 516  GKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMMTRQPTEGRSRNGG 337
            GKD +YSGI+GEP++AYIFMGPIYYQKLKHMVLDKMHARG+GPRVMMTRQPTEG+S+NGG
Sbjct: 1019 GKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGG 1078

Query: 336  LRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCRKCGLLGYYHEKLKTGICSMCKNG 157
            LRVGEMERDCLIAYGASML+YERLMISSDPFEVQVCR CGLLGYY+ KLK  +C+ CKNG
Sbjct: 1079 LRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNG 1138

Query: 156  DNVSTMKLPYACKLLFQELQSMNVVPRLKLT 64
            DN++TMKLPYACKLLFQ ++++ +  +LKL+
Sbjct: 1139 DNIATMKLPYACKLLFQ-VKTIGLFFKLKLS 1168