BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00055540
         (754 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA73042.1| polyprotein [Ananas comosus]                          267   3e-69
ref|XP_007028157.1| DNA/RNA polymerases superfamily protein [The...   266   6e-69
emb|CAJ65807.1| polyprotein [Citrus sinensis]                         266   8e-69
ref|XP_007036977.1| DNA/RNA polymerases superfamily protein [The...   263   6e-68
ref|XP_007099710.1| Retrotransposon protein, Ty3-gypsy subclass,...   263   6e-68
ref|XP_007023829.1| DNA/RNA polymerases superfamily protein [The...   262   1e-67
ref|XP_007010454.1| Uncharacterized protein TCM_044274 [Theobrom...   261   1e-67
gb|ABA98110.1| retrotransposon protein, putative, Ty3-gypsy subc...   261   2e-67
gb|AAX95203.1| retrotransposon protein, putative, Ty3-gypsy sub-...   261   2e-67
gb|ABG22421.1| retrotransposon protein, putative, Ty3-gypsy subc...   261   2e-67
ref|XP_007028165.1| Retrotransposon protein, Ty3-gypsy subclass,...   259   5e-67
gb|ABF95989.1| retrotransposon protein, putative, Ty3-gypsy subc...   259   7e-67
emb|CAH66141.1| H0616A11.5 [Oryza sativa Indica Group]                259   9e-67
gb|AAV24913.1| putative polyprotein [Oryza sativa Japonica Group]     258   1e-66
gb|ABA97250.1| retrotransposon protein, putative, Ty3-gypsy subc...   258   2e-66
gb|ABA92233.1| retrotransposon protein, putative, Ty3-gypsy subc...   258   2e-66
gb|AAX96450.1| retrotransposon protein, putative, Ty3-gypsy sub-...   258   2e-66
gb|AAV32173.1| putative polyprotein [Oryza sativa Japonica Group]     258   2e-66
emb|CAE02432.2| OSJNBa0039G19.3 [Oryza sativa Japonica Group]         258   2e-66
ref|XP_007044383.1| DNA/RNA polymerases superfamily protein [The...   257   3e-66

>emb|CAA73042.1| polyprotein [Ananas comosus]
          Length = 871

 Score =  267 bits (682), Expect = 3e-69
 Identities = 128/244 (52%), Positives = 172/244 (70%)
 Frame = -1

Query: 733  LIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKVED 554
            LI++ ++L++E+V P   T   + TLV+ P L  RI   Q  D +L+K++ K+      D
Sbjct: 443  LIEQMKRLELEIVTPD--TPMRLMTLVVQPTLLDRIKEKQASDVELQKIKGKMVDGCTGD 500

Query: 553  YQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGMKR 374
            +   GD  + F+ ++ +P+  G+K++I+ EAH  PY  HPG TKMY+DLK  +WW G+K+
Sbjct: 501  FTLDGDGLMRFRGRICVPADSGIKEDILQEAHRAPYAIHPGGTKMYKDLKLLYWWPGIKK 560

Query: 373  DVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIWVI 194
            DV  FV +CL CQQVKA H+ P G LQ L IP WKW+ ITMDFVTGLP+S+ G+ AIWVI
Sbjct: 561  DVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIPVWKWEKITMDFVTGLPRSQAGHDAIWVI 620

Query: 193  VDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQREL 14
            VDRLTKSAHFIPI  T+  ++L  +Y+ EIVRLHGVP +I SDRD++F S FWRSLQ  L
Sbjct: 621  VDRLTKSAHFIPIHTTWTGERLAQVYLDEIVRLHGVPTSIVSDRDTRFVSHFWRSLQDAL 680

Query: 13   GTKL 2
            GT+L
Sbjct: 681  GTRL 684


>ref|XP_007028157.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508716762|gb|EOY08659.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 937

 Score =  266 bits (680), Expect = 6e-69
 Identities = 130/248 (52%), Positives = 168/248 (67%), Gaps = 1/248 (0%)
 Frame = -1

Query: 742  KEELIKEFEKL-QIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSE 566
            +  L+KE   L  I V L    T  L+A   + P L  RI  AQ +DE + K     R +
Sbjct: 399  RRSLVKEIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPRGK 458

Query: 565  KVEDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWE 386
            K + + +  D  L +  +L +P   GL+ EI+ EAH   Y  HPG+TKMYQDLK+ +WWE
Sbjct: 459  KGKMFTKGTDGVLRYGTRLYVPDSDGLRREILEEAHMAAYVIHPGATKMYQDLKEVYWWE 518

Query: 385  GMKRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTA 206
            G+KRDVA FV +CL CQQVKA HQ+P G LQPL +PEWKW+HI MDFVTGLP++  G  +
Sbjct: 519  GLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTNGGYDS 578

Query: 205  IWVIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSL 26
            IW++VDRLTKSAHF+P+  TYG+ +   +YV EIVRLHG+PI+I SDR ++FTS+FW  L
Sbjct: 579  IWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKL 638

Query: 25   QRELGTKL 2
            Q  LGTKL
Sbjct: 639  QEALGTKL 646


>emb|CAJ65807.1| polyprotein [Citrus sinensis]
          Length = 533

 Score =  266 bits (679), Expect = 8e-69
 Identities = 127/244 (52%), Positives = 166/244 (68%)
 Frame = -1

Query: 733  LIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKVED 554
            L+ E   L +E  L       LIA   + P L  ++   Q +D +L KL+  ++ +   D
Sbjct: 276  LLIELRSLGVE--LEVDNCRALIANFRVRPTLIDKVHQMQDQDLQLLKLKENVQKDLRTD 333

Query: 553  YQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGMKR 374
            +    +  L+   +L +P IK LK EIM EAH + Y  HPGSTKMY+ L+  +WW+GMKR
Sbjct: 334  FAVRDNGVLVMGNRLCVPDIKELKKEIMEEAHCSAYAMHPGSTKMYRTLRDHYWWQGMKR 393

Query: 373  DVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIWVI 194
            ++A FV RCL CQQ+KA HQRP G  QPL IPEWKW+HITMDFVTGLP+++ G+  +WV+
Sbjct: 394  EIAEFVSRCLVCQQIKAEHQRPAGFSQPLPIPEWKWEHITMDFVTGLPRTQSGHDGVWVV 453

Query: 193  VDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQREL 14
            VDRLTKS HF+P   TY  DKL  I+V EIVRLHG P++I SDRDS+FTS+FW SLQ+ +
Sbjct: 454  VDRLTKSTHFLPFKTTYSMDKLGNIFVAEIVRLHGAPVSIVSDRDSRFTSKFWTSLQKAM 513

Query: 13   GTKL 2
            GTKL
Sbjct: 514  GTKL 517


>ref|XP_007036977.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508774222|gb|EOY21478.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 878

 Score =  263 bits (671), Expect = 6e-68
 Identities = 128/248 (51%), Positives = 167/248 (67%), Gaps = 1/248 (0%)
 Frame = -1

Query: 742  KEELIKEFEKL-QIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSE 566
            +  L++E   L  I V L    T  L+A   + P L  RI  AQ +DE + K     +  
Sbjct: 546  RRSLVREIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPQGR 605

Query: 565  KVEDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWE 386
            K + + +  D  L +  +L +P   GL+ EI+ EAH   Y  HPG+TKMYQDLK+ +WWE
Sbjct: 606  KGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWE 665

Query: 385  GMKRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTA 206
            G+KRDVA FV +CL CQQVKA HQ+P G LQPL +PEWKW+HI MDFVTGLP++  G  +
Sbjct: 666  GLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDS 725

Query: 205  IWVIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSL 26
            IW++VDRLTKSAHF+P+  TYG+ +   +YV EIVRLHG+PI+I SDR ++FTS+FW  L
Sbjct: 726  IWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKL 785

Query: 25   QRELGTKL 2
            Q  LGTKL
Sbjct: 786  QEALGTKL 793


>ref|XP_007099710.1| Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma
           cacao] gi|508728428|gb|EOY20325.1| Retrotransposon
           protein, Ty3-gypsy subclass, putative [Theobroma cacao]
          Length = 460

 Score =  263 bits (671), Expect = 6e-68
 Identities = 128/248 (51%), Positives = 167/248 (67%), Gaps = 1/248 (0%)
 Frame = -1

Query: 742 KEELIKEFEKL-QIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSE 566
           +  L++E   L  I V L    T  L+A   + P L  RI  AQ +DE + K     +  
Sbjct: 132 RRSLVREIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPQGR 191

Query: 565 KVEDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWE 386
           K + + +  D  L +  +L +P   GL+ EI+ EAH   Y  HPG+TKMYQDLK+ +WWE
Sbjct: 192 KGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWE 251

Query: 385 GMKRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTA 206
           G+KRDVA FV +CL CQQVKA HQ+P G LQPL +PEWKW+HI MDFVTGLP++  G  +
Sbjct: 252 GLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDS 311

Query: 205 IWVIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSL 26
           IW++VDRLTKSAHF+P+  TYG+ +   +YV EIVRLHG+PI+I SDR ++FTS+FW  L
Sbjct: 312 IWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKL 371

Query: 25  QRELGTKL 2
           Q  LGTKL
Sbjct: 372 QEALGTKL 379


>ref|XP_007023829.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508779195|gb|EOY26451.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 679

 Score =  262 bits (669), Expect = 1e-67
 Identities = 128/248 (51%), Positives = 166/248 (66%), Gaps = 1/248 (0%)
 Frame = -1

Query: 742 KEELIKEFEKL-QIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSE 566
           +  L++E   L  I V L    T  L+A   + P L  RI  AQ +DE + K     R  
Sbjct: 169 RRSLVREIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPRGR 228

Query: 565 KVEDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWE 386
           K + + +  D  L +  +L +P   GL+ EI+ EAH   Y  HPG+TKMYQDLK+ +WWE
Sbjct: 229 KGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWE 288

Query: 385 GMKRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTA 206
           G+KRDVA FV +CL CQQVKA HQ+P G LQPL +PEWKW+HI MDFVTGLP++  G  +
Sbjct: 289 GLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDS 348

Query: 205 IWVIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSL 26
           IW++VD+LTKSAHF+P+  TYG+     +YV EIVRLHG+PI+I SDR ++FTS+FW  L
Sbjct: 349 IWIVVDQLTKSAHFLPVKTTYGAAHYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKL 408

Query: 25  QRELGTKL 2
           Q  LGTKL
Sbjct: 409 QEALGTKL 416


>ref|XP_007010454.1| Uncharacterized protein TCM_044274 [Theobroma cacao]
            gi|508727367|gb|EOY19264.1| Uncharacterized protein
            TCM_044274 [Theobroma cacao]
          Length = 860

 Score =  261 bits (668), Expect = 1e-67
 Identities = 127/248 (51%), Positives = 167/248 (67%), Gaps = 1/248 (0%)
 Frame = -1

Query: 742  KEELIKEFEKL-QIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSE 566
            +  L++E   L  I V L    T  L+A   + P L  +I  AQ +DE + K     +  
Sbjct: 380  RRSLVREIHSLGDIGVRLEVAETSALLAHFRVRPILMDKIKEAQSKDEFVIKALEDPQGR 439

Query: 565  KVEDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWE 386
            K + + +  D  L +  +L +P   GL+ EI+ EAH   Y  HPG+TKMYQDLK+ +WWE
Sbjct: 440  KGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWE 499

Query: 385  GMKRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTA 206
            G+KRDVA FV +CL CQQVKA HQ+P G LQPL +PEWKW+HI MDFVTGLP++  G  +
Sbjct: 500  GLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDS 559

Query: 205  IWVIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSL 26
            IW++VDRLTKSAHF+P+  TYG+ +   +YV EIVRLHG+PI+I SDR ++FTS+FW  L
Sbjct: 560  IWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKL 619

Query: 25   QRELGTKL 2
            Q  LGTKL
Sbjct: 620  QEALGTKL 627


>gb|ABA98110.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1226

 Score =  261 bits (667), Expect = 2e-67
 Identities = 125/245 (51%), Positives = 171/245 (69%)
 Frame = -1

Query: 736  ELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKVE 557
            EL +EFEKL +++V     ++  +ATL   P L  ++  AQ  D  +++++  +R  KV 
Sbjct: 957  ELCQEFEKLNLDIV-----SKGFVATLEAQPTLFDQVREAQVNDPDIQEIKKNMRRGKVI 1011

Query: 556  DYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGMK 377
             Y E     +   E++ +P  K LKD IM EAH+T Y+ HPGSTKMYQDLKQ+FWW  M+
Sbjct: 1012 GYVEDEQGTVWLGERICVPDNKELKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMR 1071

Query: 376  RDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIWV 197
            R++A +V  C  CQ+VKA HQ+P G LQPL+IPEWKW+ I MDF+TGLP++  G+ +IWV
Sbjct: 1072 REIAEYVALCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWV 1131

Query: 196  IVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQRE 17
            +VDRLTK AHFIP+  TY  +KLV +Y+  +V LHGVP  I SDR S+FTS+FW+ LQ E
Sbjct: 1132 VVDRLTKVAHFIPVKTTYTGNKLVELYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQVE 1191

Query: 16   LGTKL 2
            +GT+L
Sbjct: 1192 MGTRL 1196


>gb|AAX95203.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group]
          Length = 1566

 Score =  261 bits (666), Expect = 2e-67
 Identities = 126/246 (51%), Positives = 167/246 (67%)
 Frame = -1

Query: 739  EELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKV 560
            EEL +EFE L + +V         +A L   P L  ++ +AQ  D ++ +L+  +R  K 
Sbjct: 1315 EELRQEFEHLNVGIV-----EHGFVAALEARPTLVDQVRAAQVNDSEIAELKKNMRVGKA 1369

Query: 559  EDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGM 380
             D+ E     +   E+L +P  K LKD I++EAH T Y+ HPGSTKMYQDLK+KFWW  M
Sbjct: 1370 RDFHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSM 1429

Query: 379  KRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIW 200
            +R++A FV  C  CQ+VKA HQRP G LQPL+IPEWKW+ I MDF+TGLP++  G+ +IW
Sbjct: 1430 RREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIW 1489

Query: 199  VIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQR 20
            V+VDRLTK AHFIP+  TY   +L  +Y+  I+RLHGVP  I SDR S+FTS+FW+ LQ 
Sbjct: 1490 VVVDRLTKVAHFIPVHTTYTGKRLAELYLARIMRLHGVPRKIVSDRGSQFTSKFWQKLQE 1549

Query: 19   ELGTKL 2
            ELGT+L
Sbjct: 1550 ELGTRL 1555


>gb|ABG22421.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1572

 Score =  261 bits (666), Expect = 2e-67
 Identities = 126/246 (51%), Positives = 167/246 (67%)
 Frame = -1

Query: 739  EELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKV 560
            EEL +EFE L + +V         +A L   P L  ++ +AQ  D ++ +L+  +R  K 
Sbjct: 1315 EELRQEFEHLNVGIV-----EHGFVAALEARPTLVDQVRAAQVNDSEIAELKKNMRVGKA 1369

Query: 559  EDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGM 380
             D+ E     +   E+L +P  K LKD I++EAH T Y+ HPGSTKMYQDLK+KFWW  M
Sbjct: 1370 RDFHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSM 1429

Query: 379  KRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIW 200
            +R++A FV  C  CQ+VKA HQRP G LQPL+IPEWKW+ I MDF+TGLP++  G+ +IW
Sbjct: 1430 RREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIW 1489

Query: 199  VIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQR 20
            V+VDRLTK AHFIP+  TY   +L  +Y+  I+RLHGVP  I SDR S+FTS+FW+ LQ 
Sbjct: 1490 VVVDRLTKVAHFIPVHTTYTGKRLAELYLARIMRLHGVPRKIVSDRGSQFTSKFWQKLQE 1549

Query: 19   ELGTKL 2
            ELGT+L
Sbjct: 1550 ELGTRL 1555


>ref|XP_007028165.1| Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma
           cacao] gi|508716770|gb|EOY08667.1| Retrotransposon
           protein, Ty3-gypsy subclass, putative [Theobroma cacao]
          Length = 521

 Score =  259 bits (663), Expect = 5e-67
 Identities = 126/248 (50%), Positives = 167/248 (67%), Gaps = 1/248 (0%)
 Frame = -1

Query: 742 KEELIKEFEKL-QIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSE 566
           +  L++E   L  I V L    T  L+A   + P L  +I  AQ ++E + K     +  
Sbjct: 11  RRSLVREIHSLGDIGVRLEVAETNALLAHFRVRPILMDKIKEAQSKNEFVIKALEDPQGR 70

Query: 565 KVEDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWE 386
           K + + +  D  L +  +L +P   GL+ EI+ EAH   Y  HPG+TKMYQDLK+ +WWE
Sbjct: 71  KGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWE 130

Query: 385 GMKRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTA 206
           G+KRDVA FV +CL CQQVKA HQ+P G LQPL +PEWKW+HI MDFVTGLP++  G  +
Sbjct: 131 GLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDS 190

Query: 205 IWVIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSL 26
           IW++VDRLTKSAHF+P+  TYG+ +   +YV EIVRLHG+PI+I SDR ++FTS+FW  L
Sbjct: 191 IWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKL 250

Query: 25  QRELGTKL 2
           Q  LGTKL
Sbjct: 251 QEALGTKL 258


>gb|ABF95989.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
            [Oryza sativa Japonica Group]
          Length = 1305

 Score =  259 bits (662), Expect = 7e-67
 Identities = 125/245 (51%), Positives = 168/245 (68%)
 Frame = -1

Query: 736  ELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKVE 557
            EL +EFEKL + +V     ++  +ATL   P L  +I  AQ  D  +++++  +R  K  
Sbjct: 793  ELCQEFEKLNLGIV-----SKGFVATLEAKPTLFDQIRGAQVNDPDIQEIKKNMRRGKAI 847

Query: 556  DYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGMK 377
             + E     +   E++ +P  KGLKD IM EAH+T Y+ HPGSTKMYQDLKQ+FWW  M+
Sbjct: 848  GFVEDEQGTVWLGERICVPENKGLKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMR 907

Query: 376  RDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIWV 197
            R++A +V  C  CQ+VKA HQ+P G LQPL+IPEWKW+ I MDF+TGLP++  G+ +IWV
Sbjct: 908  REIAEYVALCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWV 967

Query: 196  IVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQRE 17
            +VDRLTK AHFIP+  TY   KL  +Y+  +V LHGVP  I SDR S+FTS+FW+ LQ E
Sbjct: 968  VVDRLTKVAHFIPVKTTYTGHKLAELYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQSE 1027

Query: 16   LGTKL 2
            LGT+L
Sbjct: 1028 LGTRL 1032


>emb|CAH66141.1| H0616A11.5 [Oryza sativa Indica Group]
          Length = 1421

 Score =  259 bits (661), Expect = 9e-67
 Identities = 126/249 (50%), Positives = 167/249 (67%)
 Frame = -1

Query: 748  SQKEELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRS 569
            S  EEL +EFE L + +V         +A L   P L  ++ +AQ  D ++ +L+  +R 
Sbjct: 983  SMCEELRQEFEHLNVGIV-----EHGFVAALEAQPTLVDQVRAAQVNDSEIAELKKNMRV 1037

Query: 568  EKVEDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWW 389
             K  D+ E     +   E+L +P  K LKD I++EAH T Y+ HPGSTKMYQDLK+KFWW
Sbjct: 1038 RKARDFHEDEHGTIWLGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWW 1097

Query: 388  EGMKRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNT 209
              M+R++A FV  C  CQ+VKA HQRP G LQPL+IPEWKW+ I MDF+TGLP++  G+ 
Sbjct: 1098 VSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHD 1157

Query: 208  AIWVIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRS 29
            +IWV+VDRLTK AHFIP+  TY   +L  +Y+  I+ LHGVP  I SDR S+FTS+FW+ 
Sbjct: 1158 SIWVVVDRLTKVAHFIPVHTTYTGKRLAELYLSRIMCLHGVPKKIVSDRGSQFTSKFWQK 1217

Query: 28   LQRELGTKL 2
            LQ ELGT+L
Sbjct: 1218 LQEELGTRL 1226


>gb|AAV24913.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1850

 Score =  258 bits (660), Expect = 1e-66
 Identities = 125/246 (50%), Positives = 166/246 (67%)
 Frame = -1

Query: 739  EELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKV 560
            EEL +EFE L + +V         +A L   P L  ++ +AQ  D ++ +L+  +R  K 
Sbjct: 1191 EELRQEFEHLNVGIV-----EHGFVAALEARPTLVDQVRAAQANDSEIAELKKNMRVGKA 1245

Query: 559  EDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGM 380
             D+ E     +   E+L +P  K LKD I++EAH T Y+ HPGSTKMYQDLK+KFWW  M
Sbjct: 1246 RDFHEDEHGTIWLGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSM 1305

Query: 379  KRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIW 200
            +R++A FV  C  CQ+VKA HQRP G LQPL+IPEWKW+ I MDF+TGLP++  G+ +IW
Sbjct: 1306 RREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIW 1365

Query: 199  VIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQR 20
            V+VDRLTK AHFIP+  TY   +L  +Y+  I+ LHGVP  I SDR S+FTS+FW+ LQ 
Sbjct: 1366 VVVDRLTKVAHFIPVHTTYTGKRLAELYLSRIMCLHGVPKKIVSDRGSQFTSKFWQKLQE 1425

Query: 19   ELGTKL 2
            ELGT+L
Sbjct: 1426 ELGTRL 1431


>gb|ABA97250.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1429

 Score =  258 bits (658), Expect = 2e-66
 Identities = 125/246 (50%), Positives = 167/246 (67%)
 Frame = -1

Query: 739  EELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKV 560
            EEL +EFE L + +V         +A L   P L  ++ +AQ  D ++ +L+  +R  K 
Sbjct: 990  EELRQEFEHLNMGIV-----EHGFVAALEARPTLVDQVRAAQVNDSEIAELKKNMRVGKA 1044

Query: 559  EDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGM 380
             D+ E     +   E+L +P  K LKD I++EAH T Y+ HPGSTKMYQDLK+KFWW  M
Sbjct: 1045 RDFHEDEHGTIWLGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSM 1104

Query: 379  KRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIW 200
            +R++A FV  C  CQ+VKA HQRP G LQPL+IPEWKW+ I MDF+TGLP++  G+ +IW
Sbjct: 1105 RREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIW 1164

Query: 199  VIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQR 20
            V+VDRLTK AHFIP+  TY   +L  +Y+  I+ LHGVP  I SDR S+FTS+FW+ LQ+
Sbjct: 1165 VVVDRLTKVAHFIPVHTTYTGKRLAELYLSRIMCLHGVPKKIVSDRGSQFTSKFWQKLQK 1224

Query: 19   ELGTKL 2
            ELGT+L
Sbjct: 1225 ELGTRL 1230


>gb|ABA92233.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1483

 Score =  258 bits (658), Expect = 2e-66
 Identities = 123/245 (50%), Positives = 167/245 (68%)
 Frame = -1

Query: 736  ELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKVE 557
            EL +EFEKL + +V     +   +A L   P L  ++  AQ  D  +++++  +R  K  
Sbjct: 971  ELCQEFEKLNLGIV-----SNGFVAALEAKPTLFDQVREAQVNDPDIQEIKKNMRRGKAI 1025

Query: 556  DYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGMK 377
             Y E     +   E++ +P  KGLKD IM EAH+T Y+ HPGSTKMYQDLKQ+FWW  M+
Sbjct: 1026 GYVEDEQGTVWLGERICVPENKGLKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMR 1085

Query: 376  RDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIWV 197
            R++A +V  C  CQ+VKA HQ+P G LQPL+IPEWKW+ I MDF+TGLP++  G+ +IWV
Sbjct: 1086 REIAEYVALCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWV 1145

Query: 196  IVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQRE 17
            +VDRLTK AHFIP+  TY  +KL  +Y+  +V LHGVP  I SDR S+FTS+FW+ LQ E
Sbjct: 1146 VVDRLTKVAHFIPVKTTYTGNKLAELYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQLE 1205

Query: 16   LGTKL 2
            +GT+L
Sbjct: 1206 MGTRL 1210


>gb|AAX96450.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77549773|gb|ABA92570.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1723

 Score =  258 bits (658), Expect = 2e-66
 Identities = 126/249 (50%), Positives = 167/249 (67%)
 Frame = -1

Query: 748  SQKEELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRS 569
            S  EEL +EFE L + +V         +A L   P L  ++ +AQ  D ++ +L+  +R 
Sbjct: 1207 SMCEELRQEFEHLNVGIV-----EHGFVAALEARPTLVDQVRAAQVNDSEIAELKKNMRV 1261

Query: 568  EKVEDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWW 389
             K  D+ E     +   E+L +P  K LKD I++EAH T Y+ HPGSTKMYQDLK+KFWW
Sbjct: 1262 GKARDFHEDEHGTIWLGERLCVPDDKELKDLILTEAHHTQYSIHPGSTKMYQDLKEKFWW 1321

Query: 388  EGMKRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNT 209
              M+R++A FV  C  CQ+VKA HQRP G LQPL+IPEWKW+ I MDF+TGLP++  G+ 
Sbjct: 1322 VSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHD 1381

Query: 208  AIWVIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRS 29
            +IWV+VDRLTK AHFIP+  TY   +L  +Y+  I+ LHGVP  I SDR S+FTS+FW+ 
Sbjct: 1382 SIWVVVDRLTKVAHFIPVHTTYTGKRLAELYLSRIMCLHGVPKKIVSDRGSQFTSKFWQK 1441

Query: 28   LQRELGTKL 2
            LQ ELGT+L
Sbjct: 1442 LQEELGTRL 1450


>gb|AAV32173.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1632

 Score =  258 bits (658), Expect = 2e-66
 Identities = 125/246 (50%), Positives = 166/246 (67%)
 Frame = -1

Query: 739  EELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKV 560
            EEL +EFE L + +V         +A L   P L  ++ +AQ  D ++ +L+  +R  K 
Sbjct: 1287 EELRQEFEHLNVGIV-----EHGFVAALEARPTLVDQVRAAQVNDSEIAELKKNMRVGKA 1341

Query: 559  EDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGM 380
             D+ E     +   E+L +P  K LKD I++EAH T Y+ HPGSTKMYQDLK+KFWW  M
Sbjct: 1342 RDFHEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSM 1401

Query: 379  KRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIW 200
            +R++A FV  C  CQ+VKA HQRP G LQPL+IPEWKW+ I MDF+TGLP++  G+ +IW
Sbjct: 1402 RREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIW 1461

Query: 199  VIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQR 20
            V+VDRLTK AHFIP+  TY   +L  +Y+  I+ LHGVP  I SDR S+FTS+FW+ LQ 
Sbjct: 1462 VVVDRLTKVAHFIPVHTTYTGKRLAELYLSRIMCLHGVPKKIVSDRGSQFTSKFWQKLQE 1521

Query: 19   ELGTKL 2
            ELGT+L
Sbjct: 1522 ELGTRL 1527


>emb|CAE02432.2| OSJNBa0039G19.3 [Oryza sativa Japonica Group]
          Length = 1472

 Score =  258 bits (658), Expect = 2e-66
 Identities = 125/246 (50%), Positives = 166/246 (67%)
 Frame = -1

Query: 739  EELIKEFEKLQIEVVLPPQTTEQLIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKV 560
            EEL +EFE L + +V         +A L   P L  ++ +AQ  D ++ +L+  +R  K 
Sbjct: 959  EELRQEFEHLNVGIV-----EHGFVAALEARPTLVDQVRAAQVNDSEIAELKKNMRVGKA 1013

Query: 559  EDYQEAGDNALLFKEKLIIPSIKGLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGM 380
             D+ E     +   E+L +P  K LKD I++EAH T Y+ HPGSTKMYQDLK+KFWW  M
Sbjct: 1014 RDFHEDEHGTIWLGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSM 1073

Query: 379  KRDVALFVERCLACQQVKALHQRPYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIW 200
            +R++A FV  C  CQ+VKA HQRP G LQPL+IPEWKW+ I MDF+TGLP++  G+ +IW
Sbjct: 1074 RREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIW 1133

Query: 199  VIVDRLTKSAHFIPIPVTYGSDKLVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQR 20
            V+VDRLTK AHFIP+  TY   +L  +Y+  I+ LHGVP  I SDR S+FTS+FW+ LQ 
Sbjct: 1134 VVVDRLTKVAHFIPVHTTYTGKRLAELYLSRIMCLHGVPKKIVSDRGSQFTSKFWQKLQE 1193

Query: 19   ELGTKL 2
            ELGT+L
Sbjct: 1194 ELGTRL 1199


>ref|XP_007044383.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508708318|gb|EOY00215.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1537

 Score =  257 bits (657), Expect = 3e-66
 Identities = 115/223 (51%), Positives = 161/223 (72%)
 Frame = -1

Query: 670  LIATLVLTPDLRTRIVSAQREDEKLEKLRLKIRSEKVEDYQEAGDNALLFKEKLIIPSIK 491
            L+A+ V+ P L  +I   Q+ D+ L++   K++  K  +++ + D  L+ ++++ +P   
Sbjct: 1035 LLASFVVRPSLLNQIRELQKSDDWLKQEVQKLQDGKASEFRLSDDGTLMLRDRICVPKDD 1094

Query: 490  GLKDEIMSEAHDTPYTAHPGSTKMYQDLKQKFWWEGMKRDVALFVERCLACQQVKALHQR 311
             L+  I+ EAH + Y  HPGSTKMY+ +K+ +WW GM+RD+A FV +CL CQQ+KA HQ+
Sbjct: 1095 QLRRAILEEAHYSAYALHPGSTKMYRTIKESYWWPGMERDIAEFVAKCLTCQQIKAEHQK 1154

Query: 310  PYGTLQPLEIPEWKWDHITMDFVTGLPKSKKGNTAIWVIVDRLTKSAHFIPIPVTYGSDK 131
            P GTLQPL IPEWKW+H+TMDFV GLP+++ G  AIWVIVDRLTKSAHF+ I  TY  ++
Sbjct: 1155 PSGTLQPLSIPEWKWEHVTMDFVLGLPRTQSGKDAIWVIVDRLTKSAHFLAIHSTYSIER 1214

Query: 130  LVIIYVREIVRLHGVPITITSDRDSKFTSQFWRSLQRELGTKL 2
            L  +Y+ EIVRLHGVP++I SDRD +FTS+FW   Q  LGTKL
Sbjct: 1215 LARLYIDEIVRLHGVPVSIVSDRDLRFTSRFWPKFQEALGTKL 1257