BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00048919
         (474 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon viru...    64   2e-08
ref|YP_052849.1| L [Maize fine streak virus] gi|49487510|gb|AAT6...    55   1e-05

>ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon virus A]
            gi|507833976|dbj|BAM36035.2| RNA-dependent RNA polymerase
            [Persimmon virus A]
          Length = 2089

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
 Frame = +2

Query: 5    DLMTIENMAGTLAVTYQSIISKDFSCLVGWIFSRINMAHHASAIWEHHPFLGKSIPEILT 184
            D+MT+EN  GT+     S       CL+ +I   +  +       ++HPFLG+ + + + 
Sbjct: 781  DIMTLENALGTIYGNAASATQGTCFCLLPYIVGIMMSSLCVMDFMDYHPFLGEGLNKHMA 840

Query: 185  SHVV--LSGVRMPQTF----KNQLTKQTLFYMMVLFPRVLGGSGTLNLLSYMSRGFPDGL 346
            S +   LSG  +  +     ++ +    +  M+ + PR LGG  +LN+   M RGFPD L
Sbjct: 841  SDMAWNLSGKDIKTSKIKIGEHGMNNSMIRLMIQIVPRTLGGYNSLNMYELMMRGFPDNL 900

Query: 347  SEWCTYLYLMSGGRNAHLSAVIDKILSPTKRSMPVFSKLLED 472
            S   +Y+Y +  G        +   L+P       +  L+ED
Sbjct: 901  SRDLSYIYKILMGSPPGFENCLKNWLAPLYMPTKNYQLLIED 942


>ref|YP_052849.1| L [Maize fine streak virus] gi|49487510|gb|AAT66751.1| L [Maize fine
            streak virus]
          Length = 1944

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
 Frame = +2

Query: 14   TIENMAGTLAVTYQSIISKDFSCLVGWIFSRINMAHHASAIWEHHPFLG---KSIPEILT 184
            T+  +  TL  + +S+ SKDFS L  ++FSR  +   +  ++  HP +     ++P I +
Sbjct: 799  TLHGIMSTLGTSVKSLCSKDFSHLPAYVFSRWLVLIASYLVFYFHPLIPGGINNLPSIQS 858

Query: 185  SHVVLSGVRMPQTFKNQLTKQTLFYMMVLFPRVLGGSGTLNLLSYMSRGFPDGLSE---W 355
             +  +      Q  ++ +T + L    + + R+ GG G      ++ RGFPD L+    W
Sbjct: 859  RYGNMGSFVKMQVQRSNMTIKKLITRCLFYFRIFGGYGIGVPSDWVMRGFPDPLTSAIAW 918

Query: 356  CTYLYLMSGGRNAHLSAVIDKILSPTKRSMPVFSKLLED 472
                  +  G N +   +   I   TK   P +  L+ D
Sbjct: 919  INRCLSLISGTNPYRDELTSFISMSTKPGDPSYLHLISD 957