BLASTX nr result
ID: Mentha25_contig00042064
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha25_contig00042064
(1421 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAZ28935.1| polyprotein [Phanerochaete chrysosporium RP-78] 242 3e-61
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 237 1e-59
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D... 233 1e-58
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 233 1e-58
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 233 2e-58
emb|CCO30980.1| Retrovirus-related Pol polyprotein from transpos... 233 2e-58
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 233 2e-58
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 232 3e-58
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 232 3e-58
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 231 5e-58
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 231 6e-58
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 231 8e-58
gb|AAZ28937.1| polyprotein [Phanerochaete chrysosporium RP-78] 230 1e-57
dbj|BAA22288.1| polyprotein [Oryza australiensis] 229 3e-57
gb|AFB73911.1| polyprotein [Citrus sinensis] 229 3e-57
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 229 3e-57
gb|AFB73912.1| polyprotein [Citrus sinensis] 228 7e-57
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 228 7e-57
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 226 2e-56
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 224 6e-56
>gb|AAZ28935.1| polyprotein [Phanerochaete chrysosporium RP-78]
Length = 1394
Score = 242 bits (618), Expect = 3e-61
Identities = 141/380 (37%), Positives = 206/380 (54%), Gaps = 3/380 (0%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
L +LYGLKQ+GREWN FL IGF+ + + C+Y + D+ S +F+ VDD L
Sbjct: 1016 LNLALYGLKQSGREWNLLLDEFLRGIGFRASSVDPCVYLRIDEGSPTFLAVHVDDFSLFA 1075
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI- 1064
+ M +LK ++ S FE TD G + +LG E +L L Q YI+K+LDRF +
Sbjct: 1076 KTREIMDKLKGELSSRFEMTDLGPVRQILGYEVIRERDQRTLMLRQAAYIRKVLDRFNMA 1135
Query: 1063 NEKPSEIPMTPNIKFFPATDNETLADVTRYRSAIGSLMYAAIATRPDIAFAVNFLAQFSS 884
+ P +PM PN + T + D YR A+GSLMYAA+ TRPDI++AV L+QF
Sbjct: 1136 DSNPVSVPMDPNTR-LQKTPDAPPPDFP-YREAVGSLMYAAVGTRPDISYAVQTLSQFCE 1193
Query: 883 KPSMTHWNAVVKIFCYLKQTKNLGILYNRCNG-AAKIEVTGFTDAGNGTESVSGCSTSGA 707
+PS HW A+ ++ YLK T GI+Y IEV G++DA G S SG
Sbjct: 1194 RPSTAHWTALKRVLRYLKGTAEWGIIYKAPEAQTTPIEVVGYSDADWGANPDDQKSISGY 1253
Query: 706 VYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFC-PGPANFWI 530
V++L G + W S KQ+ + LS ME+E++A AA LW R LL +LGF P P ++
Sbjct: 1254 VFLLGGAPVCWASRKQKSVALSSMEAEYMAGSTAASQALWCRMLLEELGFAQPNPTLLYM 1313
Query: 529 DNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKPLPKPT 350
DN +++ + N + RA HI +Y + + + + + + N A + TKPL +
Sbjct: 1314 DNQSALALARNTGTQGRAKHIDIRYHFLRDKISSKEISVAHCPGEDNPADIFTKPLARQK 1373
Query: 349 FLNHRISMELSE*GGVLRSR 290
F + R + +S G + R
Sbjct: 1374 FEHFRAMLGMSASRGSVEER 1393
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 237 bits (604), Expect = 1e-59
Identities = 134/377 (35%), Positives = 216/377 (57%), Gaps = 8/377 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKR-DDQSISFIGFWVDDLYLL 1244
L +SLYGLKQA R W +RF +F++ +G+ R++ +HC Y KR DD + +VDD+ ++
Sbjct: 933 LTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFIILLLYVDDMLVV 992
Query: 1243 TSGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI 1064
+ ++ LK Q+ EF+ D G +LG++ + K+ + LSQ Y+QK+L RF +
Sbjct: 993 GPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNM 1052
Query: 1063 NE-KPSEIPMTPNIKF----FPATDNETLADVTR--YRSAIGSLMYAAIATRPDIAFAVN 905
+ P P+ N K P+++ E + +++R Y SA+GSLMYA I TRPDIA AV
Sbjct: 1053 QDYNPISTPLPVNYKLSSSMIPSSEAERM-EMSRVPYASAVGSLMYAMICTRPDIAQAVG 1111
Query: 904 FLAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSG 725
+++F + P HWNAV +I Y++ T + C G ++ + G+ D+ +
Sbjct: 1112 TVSRFMADPGKEHWNAVKRILRYIRGTSGAAL----CFGGSEFTIRGYVDSDFAGDLDKR 1167
Query: 724 CSTSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPGP 545
ST+G V+ LAGGA+ W+S+ Q + LS E+E++A+ +A + +W + LL +LG
Sbjct: 1168 KSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEELGHKQQK 1227
Query: 544 ANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKP 365
+ D+ +++ I NP H R HI QY + ++ E G+V + KI TK N A ++TKP
Sbjct: 1228 ITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTKP 1287
Query: 364 LPKPTFLNHRISMELSE 314
+ F+ R S L E
Sbjct: 1288 INSDKFIWCRSSYGLLE 1304
>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
Length = 1303
Score = 233 bits (595), Expect = 1e-58
Identities = 132/379 (34%), Positives = 215/379 (56%), Gaps = 10/379 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
L+RS+YGLKQA R WN F + + GF R E C+Y K ++F+ +VDD+ L+
Sbjct: 923 LERSIYGLKQASRSWNLCFHEKVKEFGFSRSEDESCVYVKASGSIVTFLVLYVDDILLMG 982
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI- 1064
+ ++ +K + F D G ++LGI + K + LSQ Y++K+L RF +
Sbjct: 983 NDIPTLQDVKAWLGKCFAMKDLGEAAYILGIRILRDRKKRLIGLSQGTYLEKVLKRFSME 1042
Query: 1063 NEKPSEIPMTPNIKF----FPATDNETLADVTR--YRSAIGSLMYAAIATRPDIAFAVNF 902
N K E+P+ N K P+TD E +A+++R Y SA+GS+MYA TRPD+AFA++
Sbjct: 1043 NSKKGELPIQSNAKLSKTQSPSTDEE-IAEMSRVPYASAVGSIMYAMTCTRPDVAFALSM 1101
Query: 901 LAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGC 722
++++ P HW AV I YL++TKN+ ++ G+ + V G+TDA T+ SG
Sbjct: 1102 VSRYQGNPGRAHWIAVKNILKYLRRTKNMVLV---LGGSDTLRVEGYTDASFQTDRDSGR 1158
Query: 721 STSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPG-- 548
S SG V++L GGA+ W S KQ + S ESE+IA+ +A++ W+++ + DLG P
Sbjct: 1159 SQSGWVFLLNGGAVTWKSSKQETVADSTCESEYIAASEASKEAAWLKNFIGDLGVVPSIQ 1218
Query: 547 -PANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLT 371
P + DN ++ + + P H ++ HI R+Y + + + E G +++ ++ ++ N A LT
Sbjct: 1219 EPLELFCDNEGAVALTKEPRDHGKSRHIDRKYHYIRHRVEEGHLLVKRVSSEDNPADPLT 1278
Query: 370 KPLPKPTFLNHRISMELSE 314
K L + H S+ L +
Sbjct: 1279 KALSRIKHNQHARSIGLRD 1297
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 233 bits (595), Expect = 1e-58
Identities = 132/377 (35%), Positives = 216/377 (57%), Gaps = 8/377 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKR-DDQSISFIGFWVDDLYLL 1244
L +SLYGLKQA R W +RF +F++ + + R++ +HC Y KR D + +VDD+ ++
Sbjct: 933 LTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVV 992
Query: 1243 TSGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI 1064
+ ++ LK Q+ EF+ D G +LG++ + K+ + LSQ Y++K+L RF +
Sbjct: 993 GPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM 1052
Query: 1063 NE-KPSEIPMTPNIKFF----PATDNETLADVTR--YRSAIGSLMYAAIATRPDIAFAVN 905
+ KP P+ N K P+ + E + +++R Y SA+GSLMYA I TRPDIA AV
Sbjct: 1053 QDCKPISTPLPVNFKLSSGMSPSNEAERM-EMSRVPYASAVGSLMYAMICTRPDIAQAVG 1111
Query: 904 FLAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSG 725
+++F + P HWNAV +I Y+K T + + C G +++ V G+ D+ +
Sbjct: 1112 VVSRFMADPGKEHWNAVKRIMRYIKGTSGVAV----CFGGSELTVWGYVDSDFAGDHDKR 1167
Query: 724 CSTSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPGP 545
ST+G V+ LAGGA+ W+S+ Q + LS E+E++A+ +A + +W++ L+ +LG
Sbjct: 1168 KSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQ 1227
Query: 544 ANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKP 365
+ D+ +++ I NP H R HI QY + ++ E G+V + KI T N A ++TKP
Sbjct: 1228 ITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKP 1287
Query: 364 LPKPTFLNHRISMELSE 314
+ F+ R S L E
Sbjct: 1288 INTDKFVWCRSSYGLLE 1304
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 233 bits (594), Expect = 2e-58
Identities = 132/377 (35%), Positives = 216/377 (57%), Gaps = 8/377 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKR-DDQSISFIGFWVDDLYLL 1244
L +SLYGLKQA R W +RF +F++ + + R++ +HC Y KR D + +VDD+ ++
Sbjct: 933 LTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVV 992
Query: 1243 TSGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI 1064
+ ++ LK Q+ EF+ D G +LG++ + K+ + LSQ Y++K+L RF +
Sbjct: 993 GPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNM 1052
Query: 1063 NE-KPSEIPMTPNIKFF----PATDNETLADVTR--YRSAIGSLMYAAIATRPDIAFAVN 905
+ KP P+ N K P+ + E + +++R Y SA+GSLMYA I TRPDIA AV
Sbjct: 1053 QDCKPISTPLPVNFKLSSGMSPSNEAERM-EMSRVPYASAVGSLMYAMICTRPDIAQAVG 1111
Query: 904 FLAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSG 725
+++F + P HWNAV +I Y+K T + + C G +++ V G+ D+ +
Sbjct: 1112 VVSRFMADPGKEHWNAVKRIMRYIKGTSGVAV----CFGGSELTVRGYVDSDFAGDHDKR 1167
Query: 724 CSTSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPGP 545
ST+G V+ LAGGA+ W+S+ Q + LS E+E++A+ +A + +W++ L+ +LG
Sbjct: 1168 KSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQ 1227
Query: 544 ANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKP 365
+ D+ +++ I NP H R HI QY + ++ E G+V + KI T N A ++TKP
Sbjct: 1228 ITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKP 1287
Query: 364 LPKPTFLNHRISMELSE 314
+ F+ R S L E
Sbjct: 1288 INADKFVWCRSSYGLLE 1304
>emb|CCO30980.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 Includes:
RecName: Full=Protease [Rhizoctonia solani AG-1 IB]
Length = 742
Score = 233 bits (593), Expect = 2e-58
Identities = 134/367 (36%), Positives = 218/367 (59%), Gaps = 7/367 (1%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
L+++LYGLKQA R + R + L+ + F R +H ++ +R+ ++++ I VDD+ L
Sbjct: 378 LKKALYGLKQAARAFYLRLREVLVNLRFTRCETDHAVFWRREGENLAIILAHVDDMLLAG 437
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI- 1064
+ ++ +K ++ F+ D G P+ +G+E E + K +L++SQ +YI+ IL RF +
Sbjct: 438 KPRAYLEDIKAEMAKSFDIVDLGEPQMFVGVEIERDRKAGTLKISQRRYIEDILKRFGME 497
Query: 1063 NEKPSEIPM--TPNIKFFPATDNETLADVTRYRSAIGSLMYAAIATRPDIAFAVNFLAQF 890
N KP PM PN+ P D T+ + T Y+ IGSLMYA I+TR DIA+A LAQ
Sbjct: 498 NCKPCVTPMAEVPNL---PKLDAPTV-NRTLYQRGIGSLMYAMISTRGDIAYATGLLAQH 553
Query: 889 SSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGCSTSG 710
++ P HW A+ ++ YL+ + NLGI+++R + E+ GF DA + + STSG
Sbjct: 554 AANPGEEHWKALQRVLRYLRGSTNLGIIFDRSRPS---ELVGFVDADYAGDPNTSRSTSG 610
Query: 709 AVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCP-GPANFW 533
++ + GG+I W S KQ I+LS E+E++A+ AA+ +W+R L +LGF GP +
Sbjct: 611 WIFKMTGGSIAWSSRKQPTISLSSTEAEYVAAASAARELIWVRGFLSELGFTQNGPTVVY 670
Query: 532 IDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKPLPK- 356
DN +SM + +NP +H+ HI+ +Y + ++ E+ + L I T + A MLTKPL +
Sbjct: 671 TDNQSSMALSKNPGNHQNTKHIRVKYHFIREMIELKEIELKFIPTDEQIADMLTKPLGRV 730
Query: 355 --PTFLN 341
PTF++
Sbjct: 731 KFPTFVS 737
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 233 bits (593), Expect = 2e-58
Identities = 133/371 (35%), Positives = 212/371 (57%), Gaps = 10/371 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
LQ+S+YGLKQA R WN RF + + GF + +E C+Y K ++ + +VDD+ L+
Sbjct: 520 LQKSIYGLKQASRSWNIRFDEEIKRFGFIKNKEEPCVYMKVSGSTLVILILYVDDILLVG 579
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI- 1064
+ ++ +K ++ F D G ++LGI + + LSQ YI K+L+RF +
Sbjct: 580 NDIPMLESVKSSLRKSFSMKDLGDAAYILGIRIYRDRSKRLIGLSQEMYIDKVLNRFNMQ 639
Query: 1063 NEKPSEIPMTPNIKF----FPATDNE--TLADVTRYRSAIGSLMYAAIATRPDIAFAVNF 902
N K +PM I P T +E ++D+ Y SAIGS+MYA I TRPD+++A++
Sbjct: 640 NSKRGFLPMAHGINLSKNQCPTTTDERDKMSDIP-YASAIGSIMYAMICTRPDVSYALSV 698
Query: 901 LAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGC 722
+++ + PS HW AV I YL++TK++ ++Y G ++ V G+TDA T+
Sbjct: 699 TSRYQADPSEGHWTAVKNILKYLRRTKDVFLVY---GGDEELVVNGYTDASFQTDKDDYR 755
Query: 721 STSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCP--- 551
S SG V+IL GGA+ W S KQ + S E+E+IA+ +AA+ G+WIR+ + +LG P
Sbjct: 756 SQSGFVFILNGGAVSWKSSKQETVADSTTEAEYIAASEAAKEGVWIRNFITELGMVPSAS 815
Query: 550 GPANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLT 371
P + + DN+ ++ + P SH+++ HI R+Y ++ + G V + K+ T N A LT
Sbjct: 816 SPMDLYCDNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKVHTDLNIADPLT 875
Query: 370 KPLPKPTFLNH 338
KPL +P H
Sbjct: 876 KPLTQPKHEAH 886
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 232 bits (592), Expect = 3e-58
Identities = 131/377 (34%), Positives = 215/377 (57%), Gaps = 8/377 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKR-DDQSISFIGFWVDDLYLL 1244
L +SLYGLKQA R W +RF +F++ + + R++ +HC Y KR D + +VDD+ ++
Sbjct: 933 LTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDILVV 992
Query: 1243 TSGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI 1064
+ ++ LK Q+ EF+ D G +LG++ + K+ + LSQ Y++K+L RF +
Sbjct: 993 GPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM 1052
Query: 1063 NE-KPSEIPMTPNIKFF----PATDNETLADVTR--YRSAIGSLMYAAIATRPDIAFAVN 905
+ KP P+ N K P+ + E + +++R Y SA+GSLMYA I TRPDIA AV
Sbjct: 1053 QDCKPISTPLPVNFKLSSGMSPSNEAERM-EMSRVPYASAVGSLMYAMICTRPDIAQAVG 1111
Query: 904 FLAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSG 725
+++F + P HWNAV +I Y+K T + + C G +++ V G+ D+ +
Sbjct: 1112 VVSRFMADPGKEHWNAVKRIMRYIKGTSGVAV----CFGGSELTVRGYVDSDFAGDHDKR 1167
Query: 724 CSTSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPGP 545
ST+G V+ L GGA+ W+S+ Q + LS E+E++A+ +A + +W++ L+ +LG
Sbjct: 1168 KSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQ 1227
Query: 544 ANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKP 365
+ D+ +++ I NP H R HI QY + ++ E G+V + KI T N A ++TKP
Sbjct: 1228 ITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKP 1287
Query: 364 LPKPTFLNHRISMELSE 314
+ F+ R S L E
Sbjct: 1288 INADKFVWCRSSYGLLE 1304
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 232 bits (591), Expect = 3e-58
Identities = 137/379 (36%), Positives = 211/379 (55%), Gaps = 10/379 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
LQRS+YGLKQA R WN F + GF++ E C+Y + + F+ +VDD+ L+
Sbjct: 290 LQRSIYGLKQASRSWNIIFNEAIKSYGFEQNLGEPCVYKQIGGDKVVFLVLYVDDILLIG 349
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI- 1064
+ + ++K+ + S+F+ D G ++LGI+ + KN L LSQ YI K+L +F +
Sbjct: 350 NDVESLSKVKNWLASQFQMKDLGEASYILGIQMTRDRKNRLLALSQAAYIDKVLVKFAME 409
Query: 1063 NEKPSEIPMTPNIKF----FPAT--DNETLADVTRYRSAIGSLMYAAIATRPDIAFAVNF 902
N K +P + P T D E + V Y SA+GSLMYA + TRPDI FAV
Sbjct: 410 NSKKGNLPSRHGVHLSKEQCPKTPQDEEKMRRVP-YASAVGSLMYAMLCTRPDICFAVGV 468
Query: 901 LAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGC 722
++++ S P + HW AV I YL++T+N ++Y +G I + G+TD+ ++ S
Sbjct: 469 VSRYQSNPGLDHWVAVKHILKYLRRTRNYMLVY---SGRELIPI-GYTDSDFQSDRDSRK 524
Query: 721 STSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPG-- 548
STS AV+ L GGAI W S KQ + S ME+E++A+C+AA+ +W+R+ L +L P
Sbjct: 525 STSEAVFTLGGGAIIWRSVKQTCVADSTMEAEYVAACEAAKEAVWLREFLKELEVVPNMH 584
Query: 547 -PANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLT 371
P + DNS ++ + P +H++ HI+R++ ++ G V + KI + N A T
Sbjct: 585 EPIRLYCDNSGAVANAKEPRNHRKGKHIERKFHLVREIVSRGDVSVEKIASANNIADPFT 644
Query: 370 KPLPKPTFLNHRISMELSE 314
K LP +F H M L E
Sbjct: 645 KTLPARSFEQHLEGMGLRE 663
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 231 bits (590), Expect = 5e-58
Identities = 134/370 (36%), Positives = 210/370 (56%), Gaps = 9/370 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
L RS+YGLKQA R WN RF + + F R +E C+Y K +++F+ +VDD+ LL
Sbjct: 587 LHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLG 646
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEIN 1061
+ ++ +K + S F D G ++LGI + N + LSQ YI K+L RF ++
Sbjct: 647 NDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMH 706
Query: 1060 E-KPSEIPMTPNIKF----FPAT-DNETLADVTRYRSAIGSLMYAAIATRPDIAFAVNFL 899
+ K IPM+ I P+T D Y SAIGS+MYA + TRPD+A A++
Sbjct: 707 DSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMT 766
Query: 898 AQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGCS 719
+++ S P +HW V IF YL++TK+ ++Y G+ ++ V+G+TDA T+ S
Sbjct: 767 SRYQSDPGESHWIVVRNIFKYLRRTKDKFLVY---GGSEELVVSGYTDASFQTDKDDFRS 823
Query: 718 TSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCP---G 548
SG + L GGA+ W S KQ + S E+E+IA+ +AA+ +WIR + +LG P G
Sbjct: 824 QSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISG 883
Query: 547 PANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTK 368
P + + DN+ ++ + P+SH+++ HIQR+Y ++ + G V + ++ T N A TK
Sbjct: 884 PIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHFTK 943
Query: 367 PLPKPTFLNH 338
PLP+P +H
Sbjct: 944 PLPQPKHESH 953
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 231 bits (589), Expect = 6e-58
Identities = 126/345 (36%), Positives = 200/345 (57%), Gaps = 9/345 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
LQ+S+YGLKQA R WN RF + GF++ E C+Y K + ++F+ +VDD+ L+
Sbjct: 950 LQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIG 1009
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI- 1064
+ + +K + ++F+ D G +++LGI+ N KN +L +SQ YI K+L R+++
Sbjct: 1010 NDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQ 1069
Query: 1063 NEKPSEIPMTPNIKFFPATDNETLADV-----TRYRSAIGSLMYAAIATRPDIAFAVNFL 899
N K ++P I +T +V Y SA+GSLMYA + TRPDI ++V +
Sbjct: 1070 NSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIV 1129
Query: 898 AQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGCS 719
+++ S P HW AV I YL++T+N ++Y GA + +TG+TD+ ++ + S
Sbjct: 1130 SRYQSNPGRDHWTAVKNILKYLRRTRNYMLVY----GAKDLILTGYTDSDFQSDKDARKS 1185
Query: 718 TSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPG--- 548
TSG+V+ L GGA+ W S KQ I S ME+E++A+C+AA+ +W+R L DL P
Sbjct: 1186 TSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHL 1245
Query: 547 PANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVL 413
P + DNS ++ + P SHKR HI+R+Y ++ G VV+
Sbjct: 1246 PITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVHRGDVVV 1290
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 231 bits (588), Expect = 8e-58
Identities = 133/362 (36%), Positives = 210/362 (58%), Gaps = 4/362 (1%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQS-ISFIGFWVDDLYLL 1244
L +SLYGLKQ+ R+W RRF F++ G++R + C+Y DQ ++++ +VDD+ +
Sbjct: 960 LHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIA 1019
Query: 1243 TSGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI 1064
+ + +++RLK+ +++EFE D G K +LG++ + +L LSQ +YI+K+L+RFE+
Sbjct: 1020 SKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEM 1079
Query: 1063 NE-KPSEIPMTPNIKFFPATDNETLADVTR--YRSAIGSLMYAAIATRPDIAFAVNFLAQ 893
+ KP + P+ P K AT +E + + Y A+GSLMYA + TR DIA+AV+ +++
Sbjct: 1080 QDCKPVQTPLGPQFKLSAATTSEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSR 1139
Query: 892 FSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGCSTS 713
+ S P HWNAV I YLK + G+LY + + KIEV GF D+ + STS
Sbjct: 1140 YLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTK-SDKIEVMGFVDSDFAGDLDRRKSTS 1198
Query: 712 GAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPGPANFW 533
+++L I W S Q G LS E+EFIA+ +A + +W+R LL +L +
Sbjct: 1199 RYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLNQKIVQVF 1258
Query: 532 IDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKPLPKP 353
DN ++ +++N H+R HI + + + + GTVV+ KI T N A LTK LP
Sbjct: 1259 CDNQNAIHLVKNQMYHERTKHIDVKLQFIRDEVGKGTVVVSKIHTSVNPADALTKSLPTA 1318
Query: 352 TF 347
F
Sbjct: 1319 KF 1320
>gb|AAZ28937.1| polyprotein [Phanerochaete chrysosporium RP-78]
Length = 1338
Score = 230 bits (587), Expect = 1e-57
Identities = 141/372 (37%), Positives = 215/372 (57%), Gaps = 4/372 (1%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKI-GFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLL 1244
L ++LYGLKQAGR WN L + G+ R + CLY K + + ++ VDD L
Sbjct: 975 LIKALYGLKQAGRVWNHLLNHVLTSLMGWTRSEADPCLYFKHEGK-LNMALVHVDDTALY 1033
Query: 1243 TSGQRD-MKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFE 1067
G+R + R K + F T G +G++ + KN ++ + Q +Y++ IL+RF
Sbjct: 1034 --GERSILDRFKADVAKHFAITTNGTLSSFVGLQ--VTRKNGAISILQTRYLETILERFG 1089
Query: 1066 INE-KPSEIPMTPNIKFFPATDNETLADVTRYRSAIGSLMYAAIATRPDIAFAVNFLAQF 890
+ + KP P+ P +K P +++T ADV Y +AIGSLMYAA TRPDIAFAV L+QF
Sbjct: 1090 MQDCKPVSTPLDPGVKLEPTPEDQTPADVP-YAAAIGSLMYAATGTRPDIAFAVQTLSQF 1148
Query: 889 SSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGCSTSG 710
+S+PS THW AV +F YLK T ++G+ + R A ++TG++DA + ++ S SG
Sbjct: 1149 TSRPSATHWTAVKHVFRYLKGTTDVGLTFAR---RADDDITGYSDA-DWAQAHDRRSVSG 1204
Query: 709 AVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPG-PANFW 533
Y+LAGG + W S+KQ + LS ME+E+IA AA+ +W+R LL +LGF PG P
Sbjct: 1205 YAYLLAGGIVSWNSKKQPTVALSTMEAEYIALSHAAKEAVWLRRLLTELGFPPGAPTVLH 1264
Query: 532 IDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKPLPKP 353
DN A++ + + H R+ HI ++ + +++ G + + + N A M TK LP+P
Sbjct: 1265 TDNQAAISFAHDTQFHARSKHIDIRHHFIRERITDGDIKVIHCASADNIADMFTKALPRP 1324
Query: 352 TFLNHRISMELS 317
HR ++ L+
Sbjct: 1325 ---KHRAALALA 1333
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 229 bits (583), Expect = 3e-57
Identities = 132/374 (35%), Positives = 209/374 (55%), Gaps = 9/374 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
LQ+S+YGLKQA R WN RF + GF + +E C+Y K +I F+ +VDD+ L+
Sbjct: 940 LQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIG 999
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEIN 1061
+ ++ +K +++ F D G ++LGI + + LSQ YI K+L RF ++
Sbjct: 1000 NDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMH 1059
Query: 1060 E-KPSEIPMTPNIKF----FPAT-DNETLADVTRYRSAIGSLMYAAIATRPDIAFAVNFL 899
+ K +PM+ I P T D + Y SAIGS+MYA + TRPD+++A++
Sbjct: 1060 DSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSAT 1119
Query: 898 AQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGCS 719
+++ S P HW AV I YL++TK++ ++Y G + V+G+TDA T+ S
Sbjct: 1120 SRYQSDPGEGHWTAVKNILKYLRRTKDMFLVY---GGEEDLVVSGYTDASFQTDKDDYRS 1176
Query: 718 TSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGF---CPG 548
SG V+ L GGA+ W S KQ + S E+E+IA+ +AA+ +WI+ + +LG G
Sbjct: 1177 QSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVMTSTTG 1236
Query: 547 PANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTK 368
P + + DNS ++ + P SH+++ HI R+Y ++ + G V + K+ T N A LTK
Sbjct: 1237 PMSLYCDNSGAIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVKICKVHTDLNIADPLTK 1296
Query: 367 PLPKPTFLNHRISM 326
PLP+P H +M
Sbjct: 1297 PLPQPKHEAHTRAM 1310
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 229 bits (583), Expect = 3e-57
Identities = 132/376 (35%), Positives = 213/376 (56%), Gaps = 7/376 (1%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKR-DDQSISFIGFWVDDLYLL 1244
L +SLYGLKQA R W +RF +F++ +G+ R++ +HC Y KR +D + +VDD+ +
Sbjct: 937 LNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVA 996
Query: 1243 TSGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI 1064
+ ++ LK Q+ EFE D G +LG++ + N + LSQ Y++KIL RF +
Sbjct: 997 GPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKNYLKKILRRFNM 1056
Query: 1063 NEKPS---EIPMTPNIKFFPATDNET-LADVTR--YRSAIGSLMYAAIATRPDIAFAVNF 902
+ S +P+ + NE +++R Y SA+GSLM+A I TRPDIA AV
Sbjct: 1057 QDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGV 1116
Query: 901 LAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGC 722
++++ + P HW AV +I Y++ T ++ + C G ++ V G+ D+ +
Sbjct: 1117 VSRYMANPGGEHWIAVKRILRYIRGTSDVAL----CYGGSEFTVRGYVDSDFAGDLDKRK 1172
Query: 721 STSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPGPA 542
ST+G V+ LAG A+ W+S+ Q + LS E+E++A+ +A + +WI+ LL +LG
Sbjct: 1173 STTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQRLLEELGHKQQKI 1232
Query: 541 NFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKPL 362
+ D+ +++ I NP H R HI QY + ++ E G+V L KI TK+N A +LTKP+
Sbjct: 1233 LVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPI 1292
Query: 361 PKPTFLNHRISMELSE 314
F+ R S L+E
Sbjct: 1293 NTDKFVWSRSSCGLAE 1308
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 229 bits (583), Expect = 3e-57
Identities = 127/367 (34%), Positives = 210/367 (57%), Gaps = 8/367 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKR-DDQSISFIGFWVDDLYLL 1244
L +SLYGLKQA R W +RF +F++ + + R++ +HC Y KR D + +VDD+ ++
Sbjct: 933 LTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVV 992
Query: 1243 TSGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI 1064
+ ++ LK Q+ EF+ D G +LG++ + K+ + LSQ Y++K+L RF +
Sbjct: 993 GPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM 1052
Query: 1063 NE-KPSEIPMTPNIKFF----PATDNETLADVTR--YRSAIGSLMYAAIATRPDIAFAVN 905
+ KP P+ N K P+ + E + +++R Y SA+GSLMYA I TRPDIA AV
Sbjct: 1053 QDCKPISTPLPVNFKLSSGMSPSNEAERM-EMSRVPYASAVGSLMYAMICTRPDIAQAVG 1111
Query: 904 FLAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSG 725
+++F + P HWNAV +I Y+K T + + C G +++ V G+ D+ +
Sbjct: 1112 VVSRFMADPGKEHWNAVKRIMRYIKGTSGVAV----CFGGSELTVRGYVDSDFAGDHDKR 1167
Query: 724 CSTSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPGP 545
ST+G V+ LAGGA+ W+S+ Q + LS E+E++A+ +A + +W++ L+ +LG
Sbjct: 1168 KSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQ 1227
Query: 544 ANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKP 365
+ D+ +++ I NP H R HI QY + ++ E G+V + KI T N A +TK
Sbjct: 1228 ITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTKS 1287
Query: 364 LPKPTFL 344
+ F+
Sbjct: 1288 INTDKFI 1294
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 228 bits (580), Expect = 7e-57
Identities = 133/376 (35%), Positives = 213/376 (56%), Gaps = 8/376 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKR-DDQSISFIGFWVDDLYLL 1244
L +SLYGLKQA R W +RF +F++ +G+ R++ +HC Y KR +D + +VDD+ +
Sbjct: 937 LNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVA 996
Query: 1243 TSGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI 1064
+ ++ LK Q+ EFE D G +LG++ + N + LSQ Y++KIL RF +
Sbjct: 997 GPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKNYLKKILRRFNM 1056
Query: 1063 NE-KPSEIPMTPNIKFF----PATDNETLADVTR--YRSAIGSLMYAAIATRPDIAFAVN 905
+ K P+ N K P+ + E +++R Y SA+GSLM+A I TRPDIA AV
Sbjct: 1057 QDCKSISTPLPVNFKLSSSMCPSNEAER-KEMSRVPYASAVGSLMFAMICTRPDIAQAVG 1115
Query: 904 FLAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSG 725
++++ + P HW AV +I Y++ T N+ + C G ++ V G+ D+ +
Sbjct: 1116 AVSRYMANPGGEHWIAVKRILRYIRGTSNVAL----CYGGSEFTVRGYVDSDFAGDLDKR 1171
Query: 724 CSTSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPGP 545
ST+G V+ LAG A+ W+S+ Q + LS E+E++A+ +A + +WI+ LL +LG
Sbjct: 1172 KSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQQK 1231
Query: 544 ANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKP 365
+ D+ +++ I NP H R HI QY + ++ E G+V L KI TK+N A +LTK
Sbjct: 1232 IPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKS 1291
Query: 364 LPKPTFLNHRISMELS 317
+ F+ R S L+
Sbjct: 1292 INTDKFVWSRSSCGLA 1307
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 228 bits (580), Expect = 7e-57
Identities = 135/370 (36%), Positives = 198/370 (53%), Gaps = 9/370 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
L RS+YGLKQA R WN F + GF + E C+Y K + + + F+ +VDD+ L+
Sbjct: 255 LNRSIYGLKQASRSWNTCFDQTIKTFGFDQCHDESCVYKKWNGKKVVFLVLYVDDILLIG 314
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI- 1064
+ + +KD + F+ D G +LGI+ N K + LSQ YI IL+RF +
Sbjct: 315 NCIGMLTSVKDWLSQRFDMKDLGEAAHILGIKLMRNRKKKMIGLSQALYIDTILNRFNMQ 374
Query: 1063 NEKPSEIPMTPNIKFFPATDNETLADV-----TRYRSAIGSLMYAAIATRPDIAFAVNFL 899
K +P I +T ++ Y SA+GSLMYA + TRPDI FAV +
Sbjct: 375 GSKKGFLPFRHGIXLSKDQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDICFAVGMV 434
Query: 898 AQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGCS 719
++F S HW AV I YLK+T++ +++ N + G+TD+ ++ S S
Sbjct: 435 SRFQSNXGREHWXAVKHIIKYLKRTRDYMLVFQSEN----LXPIGYTDSDFQSDQDSRKS 490
Query: 718 TSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCP---G 548
TSG V+ L GGAI W S KQ + S ME+E++A+ +AA+ +W+R+ LLDLG P
Sbjct: 491 TSGNVFXLGGGAISWRSIKQTXVADSTMEAEYVAASEAAKEAVWLRNFLLDLGVVPSVQS 550
Query: 547 PANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTK 368
P + DNS ++ + P SHKRA HI+R+Y + + G V+ KI ++ N A TK
Sbjct: 551 PITLYCDNSGAVANSKEPRSHKRAKHIERKYHLIRDIVQRGDXVVMKIASENNLADPFTK 610
Query: 367 PLPKPTFLNH 338
L TF H
Sbjct: 611 SLSSXTFERH 620
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 226 bits (576), Expect = 2e-56
Identities = 126/365 (34%), Positives = 214/365 (58%), Gaps = 7/365 (1%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKR-DDQSISFIGFWVDDLYLL 1244
L++SLYGLKQ+ R+W +RF ++++K+G+ R + + C+Y R +D S ++ +VDD+ +
Sbjct: 937 LKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIA 996
Query: 1243 TSGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI 1064
+ D+++LK + +EFE D G + +LG+E + + L LSQ YIQK+L RF +
Sbjct: 997 AKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGM 1056
Query: 1063 NE-KPSEIPMTPNIK----FFPATDNET-LADVTRYRSAIGSLMYAAIATRPDIAFAVNF 902
+ KP + P NI F P ++ E Y SA+GSLMYA + TRPD+A AV+
Sbjct: 1057 SSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSV 1116
Query: 901 LAQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGC 722
+++F +P HW AV +IF YL+ T ++G++Y G + VTG++D+ + +
Sbjct: 1117 VSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIY---GGDTQCLVTGYSDSDYAGDVDTRR 1173
Query: 721 STSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCPGPA 542
S +G V+ L G + W + Q +TLS E+E++A +AA+ G+W++ L+ DLG A
Sbjct: 1174 SMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQA 1233
Query: 541 NFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTKPL 362
+ D+ +++ + ++ H+R HI +Y + + + I + K+ T N A M TKP+
Sbjct: 1234 TVYCDSLSAICLAKDQVHHERTKHIDVRYHFLRSEKRI---KVKKVGTADNPADMFTKPV 1290
Query: 361 PKPTF 347
P+ F
Sbjct: 1291 PQSKF 1295
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 224 bits (572), Expect = 6e-56
Identities = 129/370 (34%), Positives = 207/370 (55%), Gaps = 9/370 (2%)
Frame = -2
Query: 1420 LQRSLYGLKQAGREWNRRFKAFLLKIGFKRVTKEHCLYSKRDDQSISFIGFWVDDLYLLT 1241
LQ+S+YGLKQA R WN RF + + GF + +E C+Y K ++ + +VDD+ L+
Sbjct: 936 LQKSIYGLKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMKVSGSTLVILILYVDDILLIG 995
Query: 1240 SGQRDMKRLKDQIQSEFEATDQGIPKFMLGIEFEINLKNNSLRLSQMQYIQKILDRFEI- 1064
+ ++ +K +++ F D G ++LGI+ + + LSQ YI K+L RF +
Sbjct: 996 NDIPMLESVKASLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYIDKVLIRFNMQ 1055
Query: 1063 NEKPSEIPMTPNIKFFPA-----TDNETLADVTRYRSAIGSLMYAAIATRPDIAFAVNFL 899
N K +PM+ I + TD + Y SAIGS+MYA I TR D+++A++
Sbjct: 1056 NTKKGFLPMSHGISPSKSQRPSTTDERDRMNGIPYASAIGSIMYAMICTRQDVSYALSVT 1115
Query: 898 AQFSSKPSMTHWNAVVKIFCYLKQTKNLGILYNRCNGAAKIEVTGFTDAGNGTESVSGCS 719
+++ + P HW AV I YL++TK+ ++Y G ++ V G+TDA T+ S
Sbjct: 1116 SRYQADPGECHWTAVKNILKYLRRTKDAFLIY---GGDEELVVNGYTDASFQTDKDDYRS 1172
Query: 718 TSGAVYILAGGAIKWISEKQRGITLSEMESEFIASCKAAQSGLWIRDLLLDLGFCP---G 548
SG V+IL GGA+ W S KQ + S ++E+IA+ +AA+ G+WIR+ + +LG P
Sbjct: 1173 QSGFVFILNGGAVSWKSSKQETVADSTTKAEYIAASEAAKEGVWIRNFIAELGVVPSASS 1232
Query: 547 PANFWIDNSASMRIIENPESHKRALHIQRQYFWTQQQCEIGTVVLHKIETKKNAAYMLTK 368
P + + DN+ ++ + P SH+++ HI R+Y ++ + G V + KI T N A LTK
Sbjct: 1233 PMDLYCDNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKIHTDLNVADPLTK 1292
Query: 367 PLPKPTFLNH 338
PL +P H
Sbjct: 1293 PLTQPKHEAH 1302