BLASTX nr result
ID: Mentha25_contig00040702
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Mentha25_contig00040702 (2900 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAH97108.1| polymerase [Orchid fleck virus] 157 2e-35 ref|YP_001294929.1| polymerase [Orchid fleck virus] gi|94384809|... 157 3e-35 gb|AGQ21977.1| RNA-dependent RNA polymerase [Citrus necrotic spo... 156 5e-35 ref|NP_042286.1| polymerase [Sonchus yellow net virus] gi|401034... 154 2e-34 gb|AGN91973.1| polymerase [Citrus leprosis virus nuclear type] 154 2e-34 gb|AHH44830.1| RNA-dependent RNA polymerase [Coffee ringspot virus] 145 1e-31 dbj|BAI79332.1| L protein [Rice yellow stunt virus] 144 2e-31 gb|AGZ87950.2| RNA-directed RNA polymerase [Eggplant mottled dwa... 143 5e-31 emb|CBY88606.2| RNA-dependent-RNA-polymerase [Eggplant mottled d... 142 7e-31 ref|YP_004927971.1| RNA-dependent RNA polymerase [Potato yellow ... 140 4e-30 ref|NP_620502.1| large protein [Rice yellow stunt virus] gi|8191... 130 5e-27 ref|YP_052849.1| L [Maize fine streak virus] gi|49487510|gb|AAT6... 124 2e-25 ref|YP_002308459.1| polymerase [Maize Iranian mosaic virus] gi|7... 114 3e-22 ref|NP_597914.1| polymerase [Northern cereal mosaic virus] 113 4e-22 ref|YP_002308376.1| L protein [Lettuce yellow mottle virus] gi|1... 113 4e-22 gb|ADE61677.1| polymerase protein [Northern cereal mosaic virus] 112 7e-22 ref|YP_052855.1| L [Maize mosaic virus] gi|81940130|sp|Q6E0W6.1|... 112 7e-22 gb|ACT21686.1| polymerase [Barley yellow striate mosaic virus] 110 3e-21 ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic ... 109 6e-21 ref|YP_224083.1| L [Taro vein chlorosis virus] gi|81929511|sp|Q5... 108 2e-20 >dbj|BAH97108.1| polymerase [Orchid fleck virus] Length = 1877 Score = 157 bits (398), Expect = 2e-35 Identities = 103/301 (34%), Positives = 152/301 (50%), Gaps = 3/301 (0%) Frame = +2 Query: 14 CDGNFILHVNLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQ 193 CD N++ K ++ P+ + GP Y+GSYTREK TE+A+A+G E L+ RPIHL Sbjct: 1111 CDHNYVQTKTSGGKLIN-PHSR-GPYPVYMGSYTREKFKPTEMAAAYGEEDLLSRPIHLM 1168 Query: 194 KLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINN 373 KLI WRY M++I++ L S+TD F + GDAEHRY+D ATKH GV N Sbjct: 1169 KLINWRYSSSSNMARILKCLLSSLTDADATLFYGMMEWIAGDAEHRYQDMATKHGGVPNV 1228 Query: 374 LYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKDK 553 + ++ R T TF KHSRGGKNETL FQ M+Y T+MI L K Sbjct: 1229 AHSILSYVRAHTTTFRKHSRGGKNETLHFQAVMIY----TSMI------------ALFKK 1272 Query: 554 HVGEVHYHEWCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSE---V 724 + G +H+HE C CI Q +++ P N + ++ E + F Y + + Sbjct: 1273 YGGIIHWHESCDECI--QQTVGNVDVVLTKRVEFPILKGNLFAYVPAESIKFHYHDMKRI 1330 Query: 725 RDMEEHDATMMSGSILEQYDGRVALSLLTGCVLGRTLAGSRHEEEKLTDSAWRMIMGKID 904 R +E+ +S + D R A + V+ + ++ +T S+ M G ++ Sbjct: 1331 RSVEDLGFRTVSYESMSPLDRRTASISMLSAVIS---SSESRDKSSVTMSSIEMWAGTVN 1387 Query: 905 V 907 + Sbjct: 1388 L 1388 >ref|YP_001294929.1| polymerase [Orchid fleck virus] gi|94384809|dbj|BAE93584.1| polymerase [Orchid fleck virus] Length = 1877 Score = 157 bits (396), Expect = 3e-35 Identities = 104/305 (34%), Positives = 149/305 (48%), Gaps = 7/305 (2%) Frame = +2 Query: 14 CDGNFILHV----NLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRP 181 CD N++ NL H GP Y+GSYTREK TE+A+A+G E L+ RP Sbjct: 1111 CDHNYVQTKTSGGNLINPH------SRGPYPVYMGSYTREKFKPTEMAAAYGEEDLLSRP 1164 Query: 182 IHLQKLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEG 361 IHL KLI WRY M++I++ L S+TD F + GDAEHRY+D ATKH G Sbjct: 1165 IHLMKLINWRYSSSSNMARILKCLLSSLTDADATLFYGMMEWIAGDAEHRYQDMATKHGG 1224 Query: 362 VINNLYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTR 541 V N + ++ R T TF KHSRGGKNETL FQ M+Y T+MI Sbjct: 1225 VPNVAHSILSYVRAHTTTFRKHSRGGKNETLHFQAVMIY----TSMI------------A 1268 Query: 542 LKDKHVGEVHYHEWCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSE 721 L K+ G +H+HE C CI Q +++ P N + ++ E + F Y + Sbjct: 1269 LFKKYGGIIHWHESCGECI--QQTVGNVDVVLTKRVEFPILKGNLFAYVPAESIKFHYHD 1326 Query: 722 ---VRDMEEHDATMMSGSILEQYDGRVALSLLTGCVLGRTLAGSRHEEEKLTDSAWRMIM 892 +R +E+ +S + D R A + V+ + ++ +T S+ M Sbjct: 1327 MKRIRSVEDLGFRTVSYESMSPLDRRTASISMLSAVIS---SSESRDKSSVTMSSIEMWA 1383 Query: 893 GKIDV 907 G +++ Sbjct: 1384 GTVNL 1388 >gb|AGQ21977.1| RNA-dependent RNA polymerase [Citrus necrotic spot virus] Length = 1877 Score = 156 bits (395), Expect = 5e-35 Identities = 106/306 (34%), Positives = 153/306 (50%), Gaps = 8/306 (2%) Frame = +2 Query: 14 CDGNFILHV----NLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRP 181 CD N++ NL H GP Y+GSYT+EK TE+A+A+G E L+ RP Sbjct: 1112 CDHNYVQTKTSGGNLINPH------SRGPYPVYMGSYTKEKFKPTEMAAAYGEEDLLSRP 1165 Query: 182 IHLQKLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEG 361 IHL KLI WRY M++I++ L S+TD F + GDAEHRY+D ATKH G Sbjct: 1166 IHLMKLINWRYSSSSNMARILKCLLSSLTDADATLFYGMMEWIAGDAEHRYQDMATKHGG 1225 Query: 362 VINNLYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTR 541 V N + ++ R T TF KHSRGGKNETL FQ M+Y T+MI Sbjct: 1226 VPNVAHSILSYVRAHTTTFRKHSRGGKNETLHFQAVMIY----TSMI------------A 1269 Query: 542 LKDKHVGEVHYHEWCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSE 721 L K+ G +H+HE C CI Q +++ P N + ++ E + F Y + Sbjct: 1270 LFKKYGGIIHWHESCGECI--QQTAGNVDVVLTKRVEFPILKGNLFAYVPAESIKFHYHD 1327 Query: 722 ---VRDMEEHDATMMSGSILEQYDGRVA-LSLLTGCVLGRTLAGSRHEEEKLTDSAWRMI 889 +R +E+ +S + D R A +S+L+ V + S ++ +T S+ M Sbjct: 1328 MKRIRSVEDIGFRTVSYESMSSLDRRTASISMLSAVVSTQ----STWDKSSVTMSSIEMW 1383 Query: 890 MGKIDV 907 G +++ Sbjct: 1384 AGTVNL 1389 >ref|NP_042286.1| polymerase [Sonchus yellow net virus] gi|401034|sp|P31332.1|L_SYNV RecName: Full=RNA-directed RNA polymerase L; Short=Protein L; AltName: Full=Large structural protein; AltName: Full=Replicase; AltName: Full=Transcriptase; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=mRNA (guanine-N(7)-)-methyltransferase; Includes: RecName: Full=mRNA guanylyltransferase gi|335138|gb|AAA47896.1| ORF [Sonchus yellow net virus] gi|484036|gb|AAA50385.1| polymerase [Sonchus yellow net virus] Length = 2116 Score = 154 bits (390), Expect = 2e-34 Identities = 101/319 (31%), Positives = 168/319 (52%), Gaps = 8/319 (2%) Frame = +2 Query: 14 CDGNFILHVNLYRKHVDIPY-LKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHL 190 CD N+I + K + + L+ G PY GSYT EK T LASA+G+ES+++R I + Sbjct: 1182 CDNNYI---RVLTKRIGNSWELRRGQFRPYFGSYTEEKFKMTTLASAYGDESILKRAIKI 1238 Query: 191 QKLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVIN 370 QKL+GWRY + + +I+K L VTD F P +TGD EHRY D ATKH G+ + Sbjct: 1239 QKLLGWRYHQGSSLYNLIQKILTCVTDADPNKFLPLPDEITGDVEHRYHDMATKHGGIPS 1298 Query: 371 NLYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKD 550 NL + T + T TF+ HS+G NE+L FQ +++ + ++ ++ S+ + Sbjct: 1299 NLIHLYTHASCNTSTFINHSKGAANESLHFQAAIIW-TCMQSICRTSASSSVSDIS---- 1353 Query: 551 KHVGEVHYHEWCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSEVRD 730 HYHE C+ CIV L+DP E + + + +CP N +++ ++ + + Sbjct: 1354 ------HYHEACNQCIVKLEDPIESDYSTSDI-SLMSCPANDLMYVKEDDIPVHFHTT-- 1404 Query: 731 MEEHDATMMSGSILEQY----DGRVALSLLTGCVLGRTLAGSRHEEEKLTDSAWRMI--- 889 ME + A+ S ++L++ D V S +T V TL ++ + S W++I Sbjct: 1405 MEFYRAS-SSSTVLKKIKKIEDAEVISSRMTWVV---TLCSHLLNQDTIKHSTWKLISED 1460 Query: 890 MGKIDVPIMLNGMVNYLIA 946 + K +V ++ + Y+++ Sbjct: 1461 LSKEEVMFIVMSITMYIMS 1479 >gb|AGN91973.1| polymerase [Citrus leprosis virus nuclear type] Length = 1877 Score = 154 bits (389), Expect = 2e-34 Identities = 102/305 (33%), Positives = 148/305 (48%), Gaps = 7/305 (2%) Frame = +2 Query: 14 CDGNFILHV----NLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRP 181 CD N++ NL H GP Y+GSYT+EK TE+A+A+G E L+ RP Sbjct: 1111 CDHNYVQTKTSGGNLINPH------SRGPYPVYMGSYTKEKFKPTEMAAAYGEEDLLSRP 1164 Query: 182 IHLQKLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEG 361 IHL KLI WRY M++ ++ L S+TD F + GDAEHRY+D ATKH G Sbjct: 1165 IHLMKLINWRYSSSSNMARTLKCLLSSLTDADATLFYGMMEWIAGDAEHRYQDMATKHGG 1224 Query: 362 VINNLYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTR 541 V N + ++ R T TF KHSRGGKNETL FQ M+Y T+MI Sbjct: 1225 VPNVAHSILSYVRAHTTTFRKHSRGGKNETLHFQAVMIY----TSMI------------A 1268 Query: 542 LKDKHVGEVHYHEWCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSE 721 L K+ G +H+HE C CI Q +++ P N + ++ E + F Y + Sbjct: 1269 LFKKYGGIIHWHESCGECI--QQTVGNVDVVLTKRVEFPILKGNLFAYVPAESIKFHYHD 1326 Query: 722 ---VRDMEEHDATMMSGSILEQYDGRVALSLLTGCVLGRTLAGSRHEEEKLTDSAWRMIM 892 +R +E+ +S + D R A + V+ + ++ +T S+ M Sbjct: 1327 MKRIRSVEDLGFRTVSYESMSSLDRRTASISMLSAVIS---SSESRDKSSVTMSSIEMWA 1383 Query: 893 GKIDV 907 G +++ Sbjct: 1384 GTVNL 1388 >gb|AHH44830.1| RNA-dependent RNA polymerase [Coffee ringspot virus] Length = 1864 Score = 145 bits (366), Expect = 1e-31 Identities = 98/298 (32%), Positives = 145/298 (48%), Gaps = 4/298 (1%) Frame = +2 Query: 11 DCDGNFILHVNLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHL 190 +CD N++ + VD P ++ GP Y GSYT+EK TE+A+A+G E L+ R Sbjct: 1110 ECDHNYVQTKTMSSGEVD-PQVR-GPFHVYQGSYTKEKFKPTEMAAAYGEEDLLSR---- 1163 Query: 191 QKLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVIN 370 RY ++ M+KIIR L S+TD F ++GDAEHRY+D ATKH GV N Sbjct: 1164 ------RYSQESSMAKIIRGLLGSLTDAEPSLFYGMMEWISGDAEHRYQDMATKHGGVPN 1217 Query: 371 NLYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKD 550 Y ++ R T TF KHSRGGKNET+ FQ ++Y + ++ Sbjct: 1218 IAYSILSYVRANTSTFRKHSRGGKNETIHFQAVLIYTSMMSLF----------------- 1260 Query: 551 KHVGEV-HYHEWCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSEVR 727 KH G + H+HE C CI P+ + R P P N + ++ EM+ F Y ++R Sbjct: 1261 KHYGGIGHWHETCDKCITRTTVDPDFQFKRR--VAFPMLPGNMFAYVPSEMIKFHYHDLR 1318 Query: 728 DM---EEHDATMMSGSILEQYDGRVALSLLTGCVLGRTLAGSRHEEEKLTDSAWRMIM 892 + E D ++S S + D A L V+ + + R + + + W I+ Sbjct: 1319 RIKAQEMLDERIVSLSSMTTDDKMAAACSLLSGVIAASQSKDRSNDTVSSITLWSSIV 1376 >dbj|BAI79332.1| L protein [Rice yellow stunt virus] Length = 1964 Score = 144 bits (363), Expect = 2e-31 Identities = 103/339 (30%), Positives = 168/339 (49%), Gaps = 8/339 (2%) Frame = +2 Query: 14 CDGNFILHVNLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQ 193 CD N I V + + + GPC PYLG+YT+EK TE+A+A+G+E ++ + + + Sbjct: 1137 CDNNHIT-VRISNQDRQVTTETLGPCKPYLGAYTKEKFKMTEVAAAYGDEDVLSKSLRIL 1195 Query: 194 KLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINN 373 K+I WRY MS+II+ ++VTDI + + GD +HR K A H G+ N Sbjct: 1196 KIINWRYQDGSTMSEIIKAPFRAVTDIDPQRMVQESTVTKGDYDHRRKMDARVHGGIPNF 1255 Query: 374 LYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKDK 553 + + T T+ KH+RGGKNE + FQ C+ I ++ +I +R + + + Sbjct: 1256 VTTPLSHISISTSTWYKHARGGKNENIHFQACI--IQTMYQII-------IRTMSNIHSQ 1306 Query: 554 HVGEVHYHEWCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSEVRDM 733 ++H HE C TCI +Q+P P+ P PT NP ++I ++ ++F YS Sbjct: 1307 E--KLHVHECCQTCICEIQEPNLDLTTPQMIPTFPTLMGNPLVYIPEQSITFDYSRT--- 1361 Query: 734 EEHDATMMSGSILEQ-------YDGRVALSLLTGC-VLGRTLAGSRHEEEKLTDSAWRMI 889 +E D + GS+ Q D +LS L C V+G T K+ DS + M Sbjct: 1362 QEVDYSRRVGSLDCQRSTDYGWVDAYSSLSWLIMCDVIGWT---------KMPDSFYIMQ 1412 Query: 890 MGKIDVPIMLNGMVNYLIAWKFYCVMMRGGNIDLHESIL 1006 ++D ++ +++ WK + DLH+++L Sbjct: 1413 QERVDHYLLSMYIIS---VWK-----VLKSEFDLHKTML 1443 >gb|AGZ87950.2| RNA-directed RNA polymerase [Eggplant mottled dwarf virus] gi|597502358|gb|AHN10100.1| RNA-directed RNA polymerase [Eggplant mottled dwarf virus] Length = 1946 Score = 143 bits (360), Expect = 5e-31 Identities = 85/233 (36%), Positives = 122/233 (52%), Gaps = 2/233 (0%) Frame = +2 Query: 83 GPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPKDGCMSKIIRKCLQS 262 GPC PY GSYT+E+ T++ASA+G+E +++R + +QKLIGWRYP D +II L + Sbjct: 1153 GPCKPYFGSYTKERFKATDIASAYGDEDVLKRAVSIQKLIGWRYPSDSTFGRIIAATLLA 1212 Query: 263 VTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSRTLTDTFVKHSRGGK 442 V+++ E + G +HR A H G+ N L ST T T+V+HSR GK Sbjct: 1213 VSNVDPETVWVREETIRGSYDHRRNTDANTHGGIPNFLNTASTHLSMCTSTWVEHSRSGK 1272 Query: 443 NETLQFQVCMLYINSLTAMINDGSNGSLRYF--TRLKDKHVGEVHYHEWCHTCIVPLQDP 616 NE + FQ CM I + M LRY R+ D + E H HE C TCI ++ Sbjct: 1273 NEYIHFQSCM--ITCVRYM--------LRYMRGPRISDA-ITEYHAHECCPTCITEIEPI 1321 Query: 617 PEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSEVRDMEEHDATMMSGSILE 775 P AP PT P+N +++ E + Y+ R + D+ ++ ILE Sbjct: 1322 PPDSTAPTMQVSFPTLPHNLLVYVESESIKMDYT--RRLAIEDSQSIAPMILE 1372 >emb|CBY88606.2| RNA-dependent-RNA-polymerase [Eggplant mottled dwarf virus] Length = 1946 Score = 142 bits (359), Expect = 7e-31 Identities = 85/233 (36%), Positives = 121/233 (51%), Gaps = 2/233 (0%) Frame = +2 Query: 83 GPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPKDGCMSKIIRKCLQS 262 GPC PY GSYT+E+ T++ASA+G+E +++R + +QKLIGWRYP D +II L + Sbjct: 1153 GPCKPYFGSYTKERFKATDIASAYGDEDVLKRAVSIQKLIGWRYPSDSTFGRIIAATLLA 1212 Query: 263 VTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSRTLTDTFVKHSRGGK 442 V+++ E + G +HR A H G+ N L ST T T+V+HSR GK Sbjct: 1213 VSNVDPETVWVREETIRGSYDHRRNTDANTHGGIPNFLNTASTHLSMCTSTWVEHSRSGK 1272 Query: 443 NETLQFQVCMLYINSLTAMINDGSNGSLRYF--TRLKDKHVGEVHYHEWCHTCIVPLQDP 616 NE + FQ CM I + M LRY R+ D + E H HE C TCI ++ Sbjct: 1273 NEYIHFQSCM--ITCVRYM--------LRYMRGPRISDA-ITEYHAHECCQTCITEIEPI 1321 Query: 617 PEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSEVRDMEEHDATMMSGSILE 775 P AP PT P N +++ E + Y+ R + D+ ++ ILE Sbjct: 1322 PPDSTAPTLPVSFPTLPQNLLVYVESESIKMDYT--RRLAIEDSQSIAPMILE 1372 >ref|YP_004927971.1| RNA-dependent RNA polymerase [Potato yellow dwarf virus] gi|293570314|gb|ADE45274.1| RNA-dependent RNA polymerase [Potato yellow dwarf virus] Length = 1931 Score = 140 bits (352), Expect = 4e-30 Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 1/273 (0%) Frame = +2 Query: 5 HPDCDGNFILHVNLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPI 184 HP+C FI + + D +GPC PY GSYT+E+ TE+ASA+G+E +++R Sbjct: 1118 HPECMTGFI-SMRVQPSTKDERMTSTGPCKPYYGSYTKERFRATEIASAYGDEDVLKRAT 1176 Query: 185 HLQKLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGV 364 ++QKLIGWRY + ++I ++VT+I + + G +HR + H G+ Sbjct: 1177 NIQKLIGWRYSAESMFGELITAVFRAVTNIDPTHLRVREEVIRGSYDHRRNTDSNTHGGI 1236 Query: 365 INNLYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCML-YINSLTAMINDGSNGSLRYFTR 541 N L ST+ T T+ +HSR G+NE + FQ C++ I + M+ S F R Sbjct: 1237 PNFLNTISTYLSICTSTWTEHSRSGRNEYIHFQACIITCILKMMPMLT-----SNHQFPR 1291 Query: 542 LKDKHVGEVHYHEWCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSE 721 ++ E H HE C TCI +++ I AP+ PT N +++ E + Y + Sbjct: 1292 IQ-----EFHAHETCGTCITEIENIDPIRTAPKRPVSFPTLVGNTLVYMDAEDVRIDYHK 1346 Query: 722 VRDMEEHDATMMSGSILEQYDGRVALSLLTGCV 820 +EE + E DG + +LL CV Sbjct: 1347 KVLIEETNTIAPLLMSSEMLDGEI--NLLEDCV 1377 >ref|NP_620502.1| large protein [Rice yellow stunt virus] gi|81919890|sp|O10378.1|L_RYSV RecName: Full=RNA-directed RNA polymerase L; Short=Protein L; AltName: Full=Large structural protein; AltName: Full=Replicase; AltName: Full=Transcriptase; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=mRNA (guanine-N(7)-)-methyltransferase; Includes: RecName: Full=mRNA guanylyltransferase gi|2961429|dbj|BAA25160.1| large protein [Rice yellow stunt virus] Length = 1967 Score = 130 bits (326), Expect = 5e-27 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 10/341 (2%) Frame = +2 Query: 14 CDGNFILHVNLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQ 193 CD N I V + + + GPC PYLG+YT+EK TE+A+A+G+E ++ + + + Sbjct: 1138 CDNNHIT-VRISNQDRQVTTETLGPCKPYLGAYTKEKFKMTEVAAAYGDEDVLSKSLRIL 1196 Query: 194 KLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINN 373 K+I WRY MS+II+ ++VTDI + + GD +HR K A H G+ N Sbjct: 1197 KIINWRYQDGSTMSEIIKAPFRAVTDIDPQRMVQESTVTKGDYDHRRKMDARVHGGIPNF 1256 Query: 374 LYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKDK 553 + + T T+ KH+R GKNE + FQ C+ I ++ +I +R + + + Sbjct: 1257 VTTPLSHISISTSTWYKHAR-GKNENIHFQACI--IQTMYQII-------IRTMSNIHSQ 1306 Query: 554 HVGEVHYHEWCHTCIVPLQDP-PEIEI-APRHFPPIPTCPNNPYLFITKEMMSFSYSEVR 727 ++H HE C T I +Q+P +++ P+ P PT NP ++I ++ ++F YS Sbjct: 1307 E--KLHVHECCQTSISEIQEPRANLDLTTPQMIPTFPTLMGNPLVYIPEQSITFDYSRT- 1363 Query: 728 DMEEHDATMMSGSILEQ-------YDGRVALSLLTGC-VLGRTLAGSRHEEEKLTDSAWR 883 +E D + GS+ Q D +LS L C V+G T K+ DS + Sbjct: 1364 --QEVDYSRRVGSLDCQRSTDYGWVDAYSSLSWLIMCDVIGWT---------KMPDSFYI 1412 Query: 884 MIMGKIDVPIMLNGMVNYLIAWKFYCVMMRGGNIDLHESIL 1006 M ++D ++ +++ WK + DLH+++L Sbjct: 1413 MQQERVDHYLLSMYIIS---IWK-----VLKSEFDLHKTML 1445 >ref|YP_052849.1| L [Maize fine streak virus] gi|49487510|gb|AAT66751.1| L [Maize fine streak virus] Length = 1944 Score = 124 bits (312), Expect = 2e-25 Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 6/246 (2%) Frame = +2 Query: 2 FHPDCDGNFILHVNLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRP 181 +H +CD N++L + + + + PY GP PYLGS+T EK + LA+AFG ESL+ + Sbjct: 1122 WHTECDENYVLLNVMEKPNKERPY---GPLEPYLGSFTDEKFKLSPLANAFGEESLLNKA 1178 Query: 182 IHLQKLIGWRYPKDGCMSKIIRKCLQSVTDIAGEYFESDPRCV------TGDAEHRYKDK 343 IH+QKL WRY K + +I L+S D+ DP V + A HRY + Sbjct: 1179 IHIQKLRYWRYNKGTDLFNLIETILKSECDL-------DPDSVFILHSSSSSATHRYSGE 1231 Query: 344 ATKHEGVINNLYYWSTWSRTLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGS 523 H ++N + T T K S+GG+N+ + FQ +L+I+S+ M+N + Sbjct: 1232 VLAHGAIMNANPDAYRYFAMTTSTLQKRSKGGRNDMIHFQGSLLWISSM--MVNKAT--- 1286 Query: 524 LRYFTRLKDKHVGEVHYHEWCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMM 703 + + G H+HE C TCI PL + + + P +P +N ++ M+ Sbjct: 1287 ------IAEIESGTYHFHEECDTCIYPLYEVLDEDTTLNTVPNVPIMKDNTLAYVPSNMI 1340 Query: 704 SFSYSE 721 SY++ Sbjct: 1341 QISYAD 1346 >ref|YP_002308459.1| polymerase [Maize Iranian mosaic virus] gi|77022088|gb|ABA60889.1| polymerase [Maize Iranian mosaic virus] Length = 1926 Score = 114 bits (285), Expect = 3e-22 Identities = 76/255 (29%), Positives = 122/255 (47%), Gaps = 1/255 (0%) Frame = +2 Query: 98 YLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPKDGCMSKIIRKCLQSVTDIA 277 Y GSYT+E+ T++A+A+GNE ++ + + +QKLI WRY + + IIR L+++TD Sbjct: 1155 YQGSYTKERFKATDIAAAYGNEDILSKAVRIQKLINWRYDETSNFADIIRLTLKAITDAD 1214 Query: 278 GEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSRTLTDTFVKHSRGGKNETLQ 457 E F + G+ +HR G+ N L ++ + T ++ HSRGGKNE + Sbjct: 1215 TEGFHRSKEEIKGEFDHRRGISGDISGGIPNFLVTPTSHFSSTTSSWTSHSRGGKNENIH 1274 Query: 458 FQVCMLYINSLTAMINDGSNGSLRYFTRLKDKHVGEVHYHEWCHTCIVPLQDPPEIEIAP 637 FQ ++ + AM+ GS+ S + E C CIV +++P P Sbjct: 1275 FQSVLINL-LYRAMVFRGSSLSTSPVVWYSE---------ERCPHCIVEIREPDPSRTTP 1324 Query: 638 RHFPPIPTCPNNPYLFITKEMMSFSYSEVRDMEEHDATMMSGSILEQYDG-RVALSLLTG 814 + IPT P NP+ FI + Y + +E H I +DG ++ + G Sbjct: 1325 K-LDKIPTAPGNPFAFIESINVKLDYHHI--VEIHKGNEEENLINSSWDGTNISCNQEAG 1381 Query: 815 CVLGRTLAGSRHEEE 859 +L + GSR E Sbjct: 1382 LLLFLMVIGSRQISE 1396 >ref|NP_597914.1| polymerase [Northern cereal mosaic virus] Length = 2058 Score = 113 bits (283), Expect = 4e-22 Identities = 88/290 (30%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Frame = +2 Query: 56 HVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPKDGCMS 235 H D L +G PYLGS T+EK T +A+G E L+ RPI L + IGW ++ + Sbjct: 1111 HPDRLILTTGSSLPYLGSVTKEKLHSTSARAAYGTEPLITRPIKLLRAIGWFIDEESNWA 1170 Query: 236 KIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSRTLTDT 415 + IR L++VTD+ S P V G HRY D A H + + ++ T+T Sbjct: 1171 ESIRNLLKAVTDLDPGKVISIPEHVKGSMMHRYLDMALAHGSLWMPSFGPASHLSMSTNT 1230 Query: 416 FVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKDKHVGEVHYHEWCHTC 595 +++++G KN TLQFQ + I T IN + R R+ + C C Sbjct: 1231 LLEYAKGSKNVTLQFQAMLGLIQFCT--INRLLSSEPRKIVRV----------YRTCPHC 1278 Query: 596 IVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSEVRDMEEHDA-TMMSGSIL 772 I P+ +P E P IP+ P+NPYL++ +E ++ + R+++ +++ ++ S L Sbjct: 1279 IKPVDEPKEDLPTPLTEEDIPSRPDNPYLYVEQEKIALVHK--RELDNYESLPIIHRSYL 1336 Query: 773 EQY---DGRVALSLLTGCVLGRTLAGSRHEEEKLTDSAW--RMIMGKIDV 907 Y R+ +L V L S+ E +TD A R I K+D+ Sbjct: 1337 LTYPHIGRRLLTEILATRVATSILYNSQEAESGMTDIAGLSRTIFLKLDI 1386 >ref|YP_002308376.1| L protein [Lettuce yellow mottle virus] gi|157427488|gb|ABV56129.1| L protein [Lettuce yellow mottle virus] Length = 2068 Score = 113 bits (283), Expect = 4e-22 Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 3/249 (1%) Frame = +2 Query: 83 GPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPKDGCMSKIIRKCLQS 262 G PYLGS T+EK + T + + E LV+RPI+L ++IGW P++ +KII+ C+ + Sbjct: 1131 GTNPPYLGSVTKEKVVITTGSKIYSGEPLVKRPINLMRVIGWFVPEESETAKIIQSCVTA 1190 Query: 263 VTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSRTLTDTFVKHSRGGK 442 V+DI F +G HR++D + KH + ++ Y +ST TDTF ++++G + Sbjct: 1191 VSDIDPLQFRGVTEGTSGSEIHRFRDTSLKHGALCSSNYLFSTRYHVSTDTFTRYAKGSQ 1250 Query: 443 NETLQFQ--VCMLYINSLTAMINDGSNGSLRYFTRLKDKHVGEVHYHEWCHTCIVPLQDP 616 N + FQ +C + +I + ++ T HY + C++CI PL D Sbjct: 1251 NYDMLFQANLCAIIEGMHQYIIATNKSNMMQQKTH---------HYKQICYSCINPL-DE 1300 Query: 617 PEIEIAPRHFP-PIPTCPNNPYLFITKEMMSFSYSEVRDMEEHDATMMSGSILEQYDGRV 793 +I P IP+ N YLF+ KE +S E D +S L+ + R Sbjct: 1301 EFYDIQSSRLPLLIPSKKKNKYLFVPKEKISM-VLEYLPHAGWDLGKLSDDALDSMNPRT 1359 Query: 794 ALSLLTGCV 820 L LT + Sbjct: 1360 KLQWLTDAI 1368 >gb|ADE61677.1| polymerase protein [Northern cereal mosaic virus] Length = 2058 Score = 112 bits (281), Expect = 7e-22 Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 6/290 (2%) Frame = +2 Query: 56 HVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPKDGCMS 235 H D L +G PYLGS T+EK T +A+G E L+ RPI L + IGW ++ + Sbjct: 1111 HPDRLILTTGSSLPYLGSVTKEKLHSTSARAAYGTEPLITRPIKLLRAIGWFIDEESNWA 1170 Query: 236 KIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSRTLTDT 415 + IR L++VTD+ S P V G HRY D A H + + ++ T+T Sbjct: 1171 ESIRNLLKAVTDLDPGKVISIPEHVKGSMMHRYLDMALAHGSLWMPSFGPASHLSMSTNT 1230 Query: 416 FVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKDKHVGEVHYHEWCHTC 595 +++++G KN TLQFQ + I T IN L + V + C C Sbjct: 1231 LLEYAKGSKNVTLQFQAMLGLIQFCT--IN----------RLLSSEPRKTVRVYRTCPHC 1278 Query: 596 IVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSEVRDMEEHDA-TMMSGSIL 772 I P+ +P E P IP+ P+NPYL++ +E ++ + R+++ +++ ++ S L Sbjct: 1279 IKPVDEPKEDLPTPLTEEDIPSRPDNPYLYVEQEKIALVHK--RELDNYESLPIIHRSYL 1336 Query: 773 EQY---DGRVALSLLTGCVLGRTLAGSRHEEEKLTDSAW--RMIMGKIDV 907 Y R+ +L V L S+ E +TD A R I K+D+ Sbjct: 1337 LTYPHIGRRLLTEILATRVATSILYNSQEAESGMTDIAGLSRTIFLKLDI 1386 >ref|YP_052855.1| L [Maize mosaic virus] gi|81940130|sp|Q6E0W6.1|L_MMVR RecName: Full=RNA-directed RNA polymerase L; Short=Protein L; AltName: Full=Large structural protein; AltName: Full=Replicase; AltName: Full=Transcriptase; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=mRNA (guanine-N(7)-)-methyltransferase; Includes: RecName: Full=mRNA guanylyltransferase gi|49487517|gb|AAT66757.1| L [Maize mosaic virus] Length = 1922 Score = 112 bits (281), Expect = 7e-22 Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 2/284 (0%) Frame = +2 Query: 98 YLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPKDGCMSKIIRKCLQSVTDIA 277 Y GSYT+E+ T++A+A+GNE ++ + + LQKLI WRY + ++II+ L+++TD + Sbjct: 1152 YQGSYTKERFKATDIAAAYGNEDILTKAVRLQKLINWRYDEGSSFARIIQLALRAITDAS 1211 Query: 278 GEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSRTLTDTFVKHSRGGKNETLQ 457 + F + G+ +HR G+ N L ++ T +++ HSRGGKNE + Sbjct: 1212 TDGFHRXKEEIKGEFDHRRGISGDISGGIPNFLVTPTSHXSCTTSSWISHSRGGKNENIH 1271 Query: 458 FQVCMLYINSLTAMINDGSNGSLRYFTRLKDKHVGEVHYHEWCHTCIVPLQDPPEIEIAP 637 FQ ++ + AM+ GS L + E C CI+ + +P P Sbjct: 1272 FQSVLINL-LYRAMVYRGSLPGLPEMV---------WYSKERCSHCIIDIVEPSPERTTP 1321 Query: 638 RHFPPIPTCPNNPYLFITKEMMSFSYSEVRDMEEHDATMMSGSILEQYDGRVALSLL--T 811 +P+ PNNP+ FI + Y ++E+ M ++L G +L+ + Sbjct: 1322 A-LSEMPSAPNNPFAFIESVNVKLDYHHQVEIEK---GMEETNLLNSEWGGSSLTSVDEA 1377 Query: 812 GCVLGRTLAGSRHEEEKLTDSAWRMIMGKIDVPIMLNGMVNYLI 943 G VL L GSR ++++S ++ KI+ +L +N +I Sbjct: 1378 GLVLFLMLIGSR----QVSESFLLLMREKIEPRPLLQAALNRVI 1417 >gb|ACT21686.1| polymerase [Barley yellow striate mosaic virus] Length = 2056 Score = 110 bits (276), Expect = 3e-21 Identities = 73/233 (31%), Positives = 110/233 (47%) Frame = +2 Query: 41 NLYRKHVDIPYLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPK 220 +L H D+ SG PYLGS T+EK T +A+G E L+ RP+ L + IGW + Sbjct: 1105 DLVLSHPDLLQTASGSSLPYLGSVTKEKLHNTAARAAYGIEPLITRPLRLLRTIGWFIDE 1164 Query: 221 DGCMSKIIRKCLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSR 400 + ++K I L++VTD+ P V G HRY D A KH + + + Sbjct: 1165 NSNLAKSIENLLRAVTDLDPSEVIVIPEHVKGSMMHRYVDMALKHGSLWMPSFGPPSHLS 1224 Query: 401 TLTDTFVKHSRGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKDKHVGEVHYHE 580 T+ F ++++G KN TL FQ + I ++IN +G R R ++ Sbjct: 1225 ISTNYFAEYAKGSKNVTLHFQALLGLIQ--YSVINKCMSGEPRKILR----------FYR 1272 Query: 581 WCHTCIVPLQDPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSEVRDMEE 739 C CI P+ +P E IP+ P+NPYLF+ KE ++ + D E Sbjct: 1273 TCPDCITPVDEPKEDIAEVLSDKEIPSRPDNPYLFVKKEKIALIHKRELDNYE 1325 >ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus] gi|82044895|sp|Q4W382.1|L_LNYV3 RecName: Full=RNA-directed RNA polymerase L; Short=Protein L; AltName: Full=Large structural protein; AltName: Full=Replicase; AltName: Full=Transcriptase; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=mRNA (guanine-N(7)-)-methyltransferase; Includes: RecName: Full=mRNA guanylyltransferase gi|67508763|emb|CAG34091.1| putative polymerase [Lettuce necrotic yellows virus] gi|83318574|emb|CAI30426.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus] Length = 2068 Score = 109 bits (273), Expect = 6e-21 Identities = 71/246 (28%), Positives = 119/246 (48%) Frame = +2 Query: 83 GPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPKDGCMSKIIRKCLQS 262 G PYLGS T+EK + + + + E LVRRPI+L ++IGW P++ +KII C+ + Sbjct: 1131 GKNPPYLGSMTKEKVVISTGSKVYSGEPLVRRPINLMRVIGWFVPEESETAKIIMSCVSA 1190 Query: 263 VTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSRTLTDTFVKHSRGGK 442 V+D+ F+ +G HR++D + KH + ++ Y +ST TDTF ++++G + Sbjct: 1191 VSDVNPLIFKGMTEGTSGSEIHRFRDTSLKHGALCSSNYLYSTRYHVSTDTFTRYAKGAQ 1250 Query: 443 NETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKDKHVGEVHYHEWCHTCIVPLQDPPE 622 N + FQ + I T +N S K+ HY + C++CI PL + Sbjct: 1251 NYDMLFQANLCAIVETTHQYVLKTNQS-------KEPQRKTHHYKQTCYSCINPLDESFY 1303 Query: 623 IEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSEVRDMEEHDATMMSGSILEQYDGRVALS 802 + + IP+ N YL++ + +S + V T+ S +Q + L Sbjct: 1304 DVKSSKLSQLIPSKKTNKYLYVPEAKISMTLEHVPAKSWEFGTLSSDG-FDQLSVNLRLQ 1362 Query: 803 LLTGCV 820 LT V Sbjct: 1363 WLTDAV 1368 >ref|YP_224083.1| L [Taro vein chlorosis virus] gi|81929511|sp|Q5GA85.1|L_TAVCV RecName: Full=RNA-directed RNA polymerase L; Short=Protein L; AltName: Full=Large structural protein; AltName: Full=Replicase; AltName: Full=Transcriptase; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=mRNA (guanine-N(7)-)-methyltransferase; Includes: RecName: Full=mRNA guanylyltransferase gi|56480913|gb|AAV92087.1| L [Taro vein chlorosis virus] Length = 1928 Score = 108 bits (269), Expect = 2e-20 Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 5/296 (1%) Frame = +2 Query: 71 YLKSGPCTPYLGSYTREKSLGTELASAFGNESLVRRPIHLQKLIGWRYPKDGCMSKIIRK 250 Y G Y GSYT+E+ T++A+A+GNE ++ + + LQKLI WRY + +KII Sbjct: 1144 YQSMGQGKIYQGSYTKERFKATDIAAAYGNEDILVKAVRLQKLINWRYDEGSNFAKIISL 1203 Query: 251 CLQSVTDIAGEYFESDPRCVTGDAEHRYKDKATKHEGVINNLYYWSTWSRTLTDTFVKHS 430 L+++TD E F + G+ +HR G+ N L ++ + T ++V HS Sbjct: 1204 TLEAITDANTEGFHRSKEEIKGEFDHRRGVTGDISGGIPNFLVTPTSHFSSTTSSWVSHS 1263 Query: 431 RGGKNETLQFQVCMLYINSLTAMINDGSNGSLRYFTRLKDKHVGEVHYHEWCHTCIVPLQ 610 RGGKNE + FQ ++ + AM+ GS L + E C CI ++ Sbjct: 1264 RGGKNENIHFQSVLINL-LYRAMVYRGSVPGLPEMI---------WYSKEKCSDCITEIK 1313 Query: 611 DPPEIEIAPRHFPPIPTCPNNPYLFITKEMMSFSYSE----VRDMEEHDATMMSGSILEQ 778 DP I+ P +P+ NP+ +I + Y + MEE I Sbjct: 1314 DPDPIKTTP-SLHTLPSAKGNPFAYIESVNVKLDYHHQIEITKGMEEEYL------INSL 1366 Query: 779 YDGR-VALSLLTGCVLGRTLAGSRHEEEKLTDSAWRMIMGKIDVPIMLNGMVNYLI 943 +DG+ V+ +G +L L GSR ++++S ++ +I+ L M+N +I Sbjct: 1367 WDGQNVSGEEESGLLLYLMLIGSR----QISESFILLMRERINAATALQYMLNRVI 1418