BLASTX nr result
ID: Mentha25_contig00039502
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha25_contig00039502
(333 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_042286.1| polymerase [Sonchus yellow net virus] gi|401034... 79 7e-13
gb|AHH44830.1| RNA-dependent RNA polymerase [Coffee ringspot virus] 76 4e-12
ref|YP_052849.1| L [Maize fine streak virus] gi|49487510|gb|AAT6... 72 8e-11
gb|AGZ87950.2| RNA-directed RNA polymerase [Eggplant mottled dwa... 70 3e-10
emb|CBY88606.2| RNA-dependent-RNA-polymerase [Eggplant mottled d... 69 7e-10
gb|AGQ21977.1| RNA-dependent RNA polymerase [Citrus necrotic spo... 65 8e-09
gb|AGN91973.1| polymerase [Citrus leprosis virus nuclear type] 65 8e-09
dbj|BAH97108.1| polymerase [Orchid fleck virus] 65 8e-09
ref|YP_001294929.1| polymerase [Orchid fleck virus] gi|94384809|... 65 8e-09
ref|YP_224083.1| L [Taro vein chlorosis virus] gi|81929511|sp|Q5... 65 1e-08
emb|CBL76312.2| RNA-dependent RNA polymerase [Raspberry vein chl... 64 2e-08
ref|YP_004927971.1| RNA-dependent RNA polymerase [Potato yellow ... 64 3e-08
ref|YP_052855.1| L [Maize mosaic virus] gi|81940130|sp|Q6E0W6.1|... 62 8e-08
ref|YP_002308459.1| polymerase [Maize Iranian mosaic virus] gi|7... 60 3e-07
ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon viru... 57 3e-06
ref|YP_002308376.1| L protein [Lettuce yellow mottle virus] gi|1... 57 3e-06
>ref|NP_042286.1| polymerase [Sonchus yellow net virus] gi|401034|sp|P31332.1|L_SYNV
RecName: Full=RNA-directed RNA polymerase L;
Short=Protein L; AltName: Full=Large structural protein;
AltName: Full=Replicase; AltName: Full=Transcriptase;
Includes: RecName: Full=RNA-directed RNA polymerase;
Includes: RecName: Full=mRNA
(guanine-N(7)-)-methyltransferase; Includes: RecName:
Full=mRNA guanylyltransferase gi|335138|gb|AAA47896.1|
ORF [Sonchus yellow net virus] gi|484036|gb|AAA50385.1|
polymerase [Sonchus yellow net virus]
Length = 2116
Score = 79.0 bits (193), Expect = 7e-13
Identities = 42/110 (38%), Positives = 69/110 (62%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
PV ++ D+ G ALR A + S+ +ITN GF + + Q + +++ LCS +
Sbjct: 1015 PVSVNHDAPPHGIAALRAQAEAVMRSA-KITNIGFKNLIDIGDNQYLRDLSEKLCSPNDL 1073
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTECNW 332
PR LHDI+GSTI G+++S+L+++D+STTINK+ DV+ I +E ++
Sbjct: 1074 EPRLLHDIVGSTIPGFVNSVLSRVDQSTTINKIAGNSDVVTSIYLSEMSY 1123
>gb|AHH44830.1| RNA-dependent RNA polymerase [Coffee ringspot virus]
Length = 1864
Score = 76.3 bits (186), Expect = 4e-12
Identities = 42/107 (39%), Positives = 64/107 (59%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
PV ++ D+ G LR A + S+ R TNK FL+ +KQ VE +AD LCSG I
Sbjct: 945 PVSVNHDAPIHGLAVLRREAENALASASRYTNKDFLELAHTCNKQMVEGLADALCSGDNI 1004
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTE 323
R LHDI+G+ + GY +SI +K++K++T+ ++ + V+E I E
Sbjct: 1005 DIRILHDIMGANLGGYFNSIASKVNKASTVLRMNKTSKVIETITGQE 1051
>ref|YP_052849.1| L [Maize fine streak virus] gi|49487510|gb|AAT66751.1| L [Maize fine
streak virus]
Length = 1944
Score = 72.0 bits (175), Expect = 8e-11
Identities = 36/110 (32%), Positives = 61/110 (55%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
PV ++ D G LR A K I S + N + + Q+ + + + +CS +
Sbjct: 958 PVSINHDGPIHGLARLREEAEKAIVESPLVKNHNLKEIAKVCYSQNSQSLLNAMCSSNVL 1017
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTECNW 332
P+ LHDI +T+YGY +SI++++DKS TI +L + +V+E +R TE +
Sbjct: 1018 EPKFLHDIFSATLYGYFNSIVSRVDKSATITRLNKKANVMEALRITEIEY 1067
>gb|AGZ87950.2| RNA-directed RNA polymerase [Eggplant mottled dwarf virus]
gi|597502358|gb|AHN10100.1| RNA-directed RNA polymerase
[Eggplant mottled dwarf virus]
Length = 1946
Score = 70.1 bits (170), Expect = 3e-10
Identities = 33/107 (30%), Positives = 64/107 (59%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
P +S DS + LR A + + S + N F+ ++++SK++ LCSG+K+
Sbjct: 964 PAAISHDSPSHSTSTLRENAREAVLSVAKHNNPDFVNLVSVASKENERVFYSALCSGEKL 1023
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTE 323
P+ LH+I +++YG +S++++IDK+ TI ++ E + V+ E+ +E
Sbjct: 1024 DPKVLHEIAKASLYGVTNSLISRIDKTRTIRRMNETMSVVSELAESE 1070
>emb|CBY88606.2| RNA-dependent-RNA-polymerase [Eggplant mottled dwarf virus]
Length = 1946
Score = 68.9 bits (167), Expect = 7e-10
Identities = 33/107 (30%), Positives = 63/107 (58%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
P +S DS + LR A + + S + N F+ +++ SK++ LCSG+K+
Sbjct: 964 PAAISHDSPSHSTSTLRENAREAVLSVAKHNNPDFVNLVSVVSKENERVFYSALCSGEKL 1023
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTE 323
P+ LH+I +++YG +S++++IDK+ TI ++ E + V+ E+ +E
Sbjct: 1024 DPKVLHEIAKASLYGVTNSLISRIDKTRTIRRMNETMSVVSELAESE 1070
>gb|AGQ21977.1| RNA-dependent RNA polymerase [Citrus necrotic spot virus]
Length = 1877
Score = 65.5 bits (158), Expect = 8e-09
Identities = 32/107 (29%), Positives = 60/107 (56%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
PV ++ D+ G LR A + + + N+ F+ +K +E +A+ LCSGK +
Sbjct: 946 PVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFMDLARCCNKSQMEGLAEALCSGKNV 1005
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTE 323
R LHD++G+++ GY +SI +K++K+ T+ ++ + V+ I E
Sbjct: 1006 DIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKSSSVIATIAGQE 1052
>gb|AGN91973.1| polymerase [Citrus leprosis virus nuclear type]
Length = 1877
Score = 65.5 bits (158), Expect = 8e-09
Identities = 32/107 (29%), Positives = 60/107 (56%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
PV ++ D+ G LR A + + + N+ F+ +K +E +A+ LCSGK +
Sbjct: 945 PVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFMDLARCCNKSQMEGLAEALCSGKNV 1004
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTE 323
R LHD++G+++ GY +SI +K++K+ T+ ++ + V+ I E
Sbjct: 1005 DIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKSSSVIATIAGQE 1051
>dbj|BAH97108.1| polymerase [Orchid fleck virus]
Length = 1877
Score = 65.5 bits (158), Expect = 8e-09
Identities = 32/107 (29%), Positives = 60/107 (56%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
PV ++ D+ G LR A + + + N+ F+ +K +E +A+ LCSGK +
Sbjct: 945 PVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFMDLARCCNKSQMEGLAEALCSGKNV 1004
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTE 323
R LHD++G+++ GY +SI +K++K+ T+ ++ + V+ I E
Sbjct: 1005 DIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKSSSVIATIAGQE 1051
>ref|YP_001294929.1| polymerase [Orchid fleck virus] gi|94384809|dbj|BAE93584.1|
polymerase [Orchid fleck virus]
Length = 1877
Score = 65.5 bits (158), Expect = 8e-09
Identities = 32/107 (29%), Positives = 60/107 (56%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
PV ++ D+ G LR A + + + N+ F+ +K +E +A+ LCSGK +
Sbjct: 945 PVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFMDLARCCNKSQMEGLAEALCSGKNV 1004
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTE 323
R LHD++G+++ GY +SI +K++K+ T+ ++ + V+ I E
Sbjct: 1005 DIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKSSSVIATIAGQE 1051
>ref|YP_224083.1| L [Taro vein chlorosis virus] gi|81929511|sp|Q5GA85.1|L_TAVCV
RecName: Full=RNA-directed RNA polymerase L;
Short=Protein L; AltName: Full=Large structural protein;
AltName: Full=Replicase; AltName: Full=Transcriptase;
Includes: RecName: Full=RNA-directed RNA polymerase;
Includes: RecName: Full=mRNA
(guanine-N(7)-)-methyltransferase; Includes: RecName:
Full=mRNA guanylyltransferase gi|56480913|gb|AAV92087.1|
L [Taro vein chlorosis virus]
Length = 1928
Score = 64.7 bits (156), Expect = 1e-08
Identities = 32/110 (29%), Positives = 58/110 (52%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
P ++ D+ G +R ++ F+ S+ TN +L + + D LCS +++
Sbjct: 960 PTSINHDAPTHGLNEIRQMSRDFLMSTTLATNPHLKSLFSLLDRGTEKDFYDALCSAQEL 1019
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTECNW 332
+ LH+I G+T+YGY + I ++ID++ T+ L E IDVL + E +
Sbjct: 1020 DVKVLHEIAGATLYGYTNGIASRIDQTGTVRALNENIDVLRRLALAETRY 1069
>emb|CBL76312.2| RNA-dependent RNA polymerase [Raspberry vein chlorosis virus]
Length = 1010
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/90 (33%), Positives = 54/90 (60%)
Frame = +3
Query: 12 LSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKIVPR 191
++L S S ++ + K++ S I N+ F + K+ E MA+ +CSG ++ +
Sbjct: 708 VNLLSPRSTSSGIKQVVTKYLSSGKDIKNEEFKNLMQTKQKKHEEFMAELICSGHELHIK 767
Query: 192 ELHDIIGSTIYGYMSSILAKIDKSTTINKL 281
+HD++ +TIYGY+ SIL+K+ K+ TI +L
Sbjct: 768 LIHDLVDATIYGYVDSILSKVVKTNTIQRL 797
>ref|YP_004927971.1| RNA-dependent RNA polymerase [Potato yellow dwarf virus]
gi|293570314|gb|ADE45274.1| RNA-dependent RNA polymerase
[Potato yellow dwarf virus]
Length = 1931
Score = 63.5 bits (153), Expect = 3e-08
Identities = 32/107 (29%), Positives = 59/107 (55%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
P LS D+ + LR A + N+ F+ + ++ K + +LCSG++I
Sbjct: 954 PASLSHDAPSHSTSVLRERARSAVMEMAPGVNREFVDLMKVADKNKELEFYKSLCSGEEI 1013
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTE 323
P+ LH+I S++YG +S+L+++DK+ TI ++ E + V+ +I E
Sbjct: 1014 DPKVLHEIAKSSMYGVTNSLLSRVDKTRTIKRMNETVSVVSDIAAAE 1060
>ref|YP_052855.1| L [Maize mosaic virus] gi|81940130|sp|Q6E0W6.1|L_MMVR RecName:
Full=RNA-directed RNA polymerase L; Short=Protein L;
AltName: Full=Large structural protein; AltName:
Full=Replicase; AltName: Full=Transcriptase; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
Includes: RecName: Full=mRNA guanylyltransferase
gi|49487517|gb|AAT66757.1| L [Maize mosaic virus]
Length = 1922
Score = 62.0 bits (149), Expect = 8e-08
Identities = 27/110 (24%), Positives = 61/110 (55%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
PV ++ D+ G +R ++ F+ ++ N TL +Q ++ D LCS +++
Sbjct: 959 PVSINHDAPTHGLNEIRQLSRDFLMNTTLAANTHLKSLFTLLDRQREKEFYDALCSAEEL 1018
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTECNW 332
+ LH++ G++++GY + I ++ID++ T+ L E ++V++ + E +
Sbjct: 1019 DVKVLHEVAGASLFGYTNGIASRIDQTRTVRALNETVNVMKRLADAEARY 1068
>ref|YP_002308459.1| polymerase [Maize Iranian mosaic virus] gi|77022088|gb|ABA60889.1|
polymerase [Maize Iranian mosaic virus]
Length = 1926
Score = 60.1 bits (144), Expect = 3e-07
Identities = 30/110 (27%), Positives = 57/110 (51%)
Frame = +3
Query: 3 PVCLSLDSAEIGSGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKI 182
P ++ D+ G LR ++ F+ + TN +L ++ + LCS +++
Sbjct: 962 PASINHDAPTHGLNELRQMSRDFLMKTTLATNPYLTDLFSLLDRKSESAFYEQLCSAEEL 1021
Query: 183 VPRELHDIIGSTIYGYMSSILAKIDKSTTINKLGEGIDVLEEIRRTECNW 332
+ LH+I G+T+YGY + I ++ID++ T+ L E DV++ R + W
Sbjct: 1022 DVKVLHEIAGATLYGYTNGIASRIDQTRTVRALNENEDVMK--RMADAEW 1069
>ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon virus A]
gi|507833976|dbj|BAM36035.2| RNA-dependent RNA polymerase
[Persimmon virus A]
Length = 2089
Score = 57.0 bits (136), Expect = 3e-06
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Frame = +3
Query: 66 KFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKIVPRELHDIIGSTIYGYMSSIL 245
KFI RI N F ++ + +++A +LC G + R LHDI +TI GY+ SIL
Sbjct: 964 KFISDPKRIRNPEFRGLMSGKIRDQAQELAASLCEGDDLHIRLLHDIYEATIIGYIDSIL 1023
Query: 246 AKIDKSTTINKLG---EGIDVLEEIRRTECN 329
+K+ KS+TI +L D + + + E N
Sbjct: 1024 SKVTKSSTIQRLAVSKSKFDSMSAVYKDEIN 1054
>ref|YP_002308376.1| L protein [Lettuce yellow mottle virus] gi|157427488|gb|ABV56129.1| L
protein [Lettuce yellow mottle virus]
Length = 2068
Score = 56.6 bits (135), Expect = 3e-06
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = +3
Query: 39 SGALRNIALKFIESSDRITNKGFLQFLTLSSKQDVEKMADTLCSGKKIVPRELHDIIGST 218
+ LR + +F+ I N F +T + +++ LCSG + R +HDI+ ST
Sbjct: 945 TAGLRRVVERFLSDGRVIRNSEFRDLMTSRDPDMEDVISEHLCSGDHLHIRLIHDIMEST 1004
Query: 219 IYGYMSSILAKIDKSTTINKLGEGIDVLEEIRR 317
I+GY+ SI +K+ KS+TI L G + +RR
Sbjct: 1005 IFGYIKSITSKVTKSSTIVSLAIGKTKGDPLRR 1037