BLASTX nr result
ID: Mentha25_contig00019499
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Mentha25_contig00019499
(2426 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus... 860 0.0
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 826 0.0
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] 824 0.0
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 823 0.0
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras... 823 0.0
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras... 821 0.0
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 819 0.0
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer... 819 0.0
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 817 0.0
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun... 798 0.0
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [... 785 0.0
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu... 782 0.0
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa... 779 0.0
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g... 779 0.0
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m... 779 0.0
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo... 779 0.0
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 774 0.0
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S... 772 0.0
ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob... 772 0.0
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob... 772 0.0
>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
Length = 983
Score = 860 bits (2222), Expect(2) = 0.0
Identities = 411/527 (77%), Positives = 453/527 (85%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN+LRRRQIK+ETEAWE AAKEYQELL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA
Sbjct: 146 KYNSLRRRQIKIETEAWENAAKEYQELLEDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAA 205
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQ+LCK+ +APYFDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAI
Sbjct: 206 EQDLCKEGKNRGAYAPYFDQLPAEMMAVITMHKLMGLLMTGGGNGSARVVQAACHIGEAI 265
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 1800
EHEVRIHKFL+ KRKNALNRT +E DP AKEQ+RL VR IV Q
Sbjct: 266 EHEVRIHKFLDNCKRKNALNRTSEEGPDPEAKEQDRLRKKVKILMKKQKVQQVRNIVRHQ 325
Query: 1799 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSK 1620
DDLK WGQ+AQ+KVGCRLIQIL TAYIQPP+DQ +D PDIRPAFVH LK VET K S+
Sbjct: 326 DDLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQRDDGAPDIRPAFVHTLKCVETLKGSR 385
Query: 1619 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 1440
RYGVIECDP+VRKG+EKTA+HMVIPYMPMLVPPLNWTGYERGAYLFLPSY+MRTHGA+QQ
Sbjct: 386 RYGVIECDPLVRKGMEKTARHMVIPYMPMLVPPLNWTGYERGAYLFLPSYMMRTHGAKQQ 445
Query: 1439 REAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXX 1260
REAVK+ P+++LEP+F+ALNTLGNTKWRVNKRILSV+DRIWANGG+LADLVDR
Sbjct: 446 REAVKRTPKQELEPIFQALNTLGNTKWRVNKRILSVVDRIWANGGRLADLVDREDLPLPE 505
Query: 1259 XXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRG 1080
EIKKW+W VKAVKK NSERHSQRCD ELKL VARK+K+EEGFYYPHNLDFRG
Sbjct: 506 EPDTEDEAEIKKWKWKVKAVKKVNSERHSQRCDIELKLAVARKIKEEEGFYYPHNLDFRG 565
Query: 1079 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSF 900
RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL W+K+ LAN+YGGGVDK SY+GR+SF
Sbjct: 566 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLQWLKVHLANLYGGGVDKFSYDGRISF 625
Query: 899 TENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
TEN++EDIFDSADRPLEG+RWWLGAEDPFQCLATC+SL EALRSP P
Sbjct: 626 TENHMEDIFDSADRPLEGKRWWLGAEDPFQCLATCMSLTEALRSPYP 672
Score = 439 bits (1128), Expect(2) = 0.0
Identities = 218/250 (87%), Positives = 231/250 (92%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL AGDKPADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQ
Sbjct: 701 LGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPADDPNVMRARLLINQVDRKLVKQ 760
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER +++DD+E+FACACYAAKTTLTALGEMFEAARSIM
Sbjct: 761 TVMTSVYGVTYIGARDQIKRRLKERASMEDDTELFACACYAAKTTLTALGEMFEAARSIM 820
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAKIIA EN PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 821 SWLGDCAKIIATENHPVRWTTPLGLPVVQPYRKLGRHMIKTSLQVLTLQRETDKVMAKRQ 880
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA ACS+AGL FAGVHDSYWTHACDVD MN+ILREKFVELY
Sbjct: 881 RTAFPPNFVHSLDGSHMMMTAIACSEAGLSFAGVHDSYWTHACDVDKMNEILREKFVELY 940
Query: 31 EQPILENLLE 2
E PILENLL+
Sbjct: 941 EAPILENLLD 950
>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
tuberosum]
Length = 993
Score = 826 bits (2133), Expect(2) = 0.0
Identities = 393/527 (74%), Positives = 450/527 (85%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN LRRRQIKVETEAWE+AAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA
Sbjct: 157 KYNLLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAA 216
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQ+LC + +AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAI
Sbjct: 217 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAI 276
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 1800
EHE RIH+FLE +K KNAL+ + +E KE+ERL VR+IV +Q
Sbjct: 277 EHEARIHRFLEKTK-KNALDGSLEETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQ 335
Query: 1799 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSK 1620
DD K WGQ+ +KVGC+LIQIL++TAYIQPP DQ++D PPDIRPAF+H LK+VET K S+
Sbjct: 336 DDEKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTVETVKGSR 395
Query: 1619 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 1440
RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP NW+GY+RGAYLFLPSYIMRTHGA+QQ
Sbjct: 396 RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQ 455
Query: 1439 REAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXX 1260
REAVK+ P++QLEPVF+AL+TLGNTKWRVNKR+L ++DRIWA+GG+LADLVDR
Sbjct: 456 REAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPE 515
Query: 1259 XXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRG 1080
EIKKW+W VKA KKEN ERHSQRCD ELKL VARKMKDEEGFYYPHNLDFRG
Sbjct: 516 EPDTEDEEEIKKWKWKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRG 575
Query: 1079 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSF 900
RAYPMHPYLNHLGSDLCRGILEF+EGRPLGKSGL W+KI LANVYGGGVDKLSYEGR +F
Sbjct: 576 RAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAF 635
Query: 899 TENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
+EN++EDIFDSADRPLEGRRWWLGAEDPFQCLATC++++EALRSP+P
Sbjct: 636 SENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATCINISEALRSPSP 682
Score = 432 bits (1110), Expect(2) = 0.0
Identities = 216/250 (86%), Positives = 228/250 (91%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL AGDKPADVYSGIAARVL+IMK DA DPA DPN ARLLI+QVDRKLVKQ
Sbjct: 711 LGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQ 770
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER AI+DD+E+F+ ACYAAKTTLTALGEMFEAARSIM
Sbjct: 771 TVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARSIM 830
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 831 SWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQ 890
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA C +AGL FAGVHDSYWTHA DVD MN+ILREKFVELY
Sbjct: 891 RTAFPPNFVHSLDGSHMMMTAITCKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVELY 950
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 951 DAPILENLLE 960
>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 824 bits (2129), Expect(2) = 0.0
Identities = 390/532 (73%), Positives = 451/532 (84%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA
Sbjct: 165 KYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQ+LC + +AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAI 284
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 1800
EHE RIH+FLE +K+ NAL+ ++ KE+ERL VR+IV +Q
Sbjct: 285 EHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQ 344
Query: 1799 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSK 1620
DD K WGQ+ +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+
Sbjct: 345 DDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSR 404
Query: 1619 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 1440
RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++GAYLFLPSYIMRTHGA+QQ
Sbjct: 405 RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQ 464
Query: 1439 REAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXX 1260
REAVK+ P++QLEPVF+AL+TLGNTKWR+N+++L ++DRIWA+GG+LADLVDR
Sbjct: 465 REAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPE 524
Query: 1259 XXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRG 1080
+I+KW+W VK VKKEN ERHSQRCD ELKL VARKMKDE+GFYYPHNLDFRG
Sbjct: 525 EPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRG 584
Query: 1079 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSF 900
RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL W+KI LANVYGGGVDKLSYEGRV+F
Sbjct: 585 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAF 644
Query: 899 TENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNPXXAWS 744
+EN++EDIFDSA+RPLEG+RWWLGAEDPFQCLATC+++AEALRSP+P A S
Sbjct: 645 SENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAIS 696
Score = 431 bits (1109), Expect(2) = 0.0
Identities = 216/250 (86%), Positives = 228/250 (91%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL AGDKPADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQ
Sbjct: 720 LGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQ 779
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM
Sbjct: 780 TVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIM 839
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAKIIAMEN PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 840 SWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQ 899
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC ++GL FAGVHDSYWTHA DVD MN+ILREKFVELY
Sbjct: 900 RTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELY 959
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 960 DAPILENLLE 969
>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
lycopersicum]
Length = 993
Score = 823 bits (2127), Expect(2) = 0.0
Identities = 393/527 (74%), Positives = 449/527 (85%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN LRRRQIKVETEAWE+AAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPL+DAIAA
Sbjct: 157 KYNLLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAA 216
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQ+LC + +AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAI
Sbjct: 217 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAI 276
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 1800
EHE RIH+FLE +K KNAL+ + +E KE+ERL VR+IV +Q
Sbjct: 277 EHEARIHRFLEKTK-KNALDGSLEETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQ 335
Query: 1799 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSK 1620
DD K WGQ+ +KVGCRLIQIL++TAYIQPP DQ+ED PPDIRPAF+H LK+V+T K S+
Sbjct: 336 DDEKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTVDTVKGSR 395
Query: 1619 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 1440
RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP NW+GY+RGAYLFLPSYIMRTHGA+QQ
Sbjct: 396 RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQ 455
Query: 1439 REAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXX 1260
REAVK+ P++QLEPVF+AL+TLGNTKWRVNKR+L ++DRIWA+GG+LADLVDR
Sbjct: 456 REAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPE 515
Query: 1259 XXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRG 1080
EIKKW+W VKA KKEN ERHSQRCD ELKL VARKMKDEEGFYYPHNLDFRG
Sbjct: 516 EPDTENEEEIKKWKWKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRG 575
Query: 1079 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSF 900
RAYPMHPYLNHLGSDLCRGILEF+EGRPLGKSGL W+KI LANVYGGGVDKLS EGR +F
Sbjct: 576 RAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSCEGRAAF 635
Query: 899 TENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
+EN++EDIFDSADRPLEGRRWWLGAEDPFQCLATC+S++EALRSP+P
Sbjct: 636 SENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATCISISEALRSPSP 682
Score = 434 bits (1117), Expect(2) = 0.0
Identities = 218/250 (87%), Positives = 229/250 (91%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL AGDKPADVYSGIAARVL+IMK DA DPA DPN ARLLI+QVDRKLVKQ
Sbjct: 711 LGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQ 770
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER AI+DD+E+FA ACYAAKTTLTALGEMFEAARSIM
Sbjct: 771 TVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFAAACYAAKTTLTALGEMFEAARSIM 830
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 831 SWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQ 890
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC +AGL FAGVHDSYWTHA DVD MN+ILREKFVELY
Sbjct: 891 RTAFPPNFVHSLDGSHMMMTAIACKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVELY 950
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 951 DAPILENLLE 960
>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
subunit RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 823 bits (2126), Expect(2) = 0.0
Identities = 389/532 (73%), Positives = 451/532 (84%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA
Sbjct: 165 KYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQ+LC + +AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA H+GEAI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAI 284
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 1800
EHE RIH+FLE +K+ NAL+ ++ KE+ER+ VR+IV +Q
Sbjct: 285 EHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQ 344
Query: 1799 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSK 1620
DD K WGQ+ +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+
Sbjct: 345 DDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSR 404
Query: 1619 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 1440
RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++GAYLFLPSYIMRTHGA+QQ
Sbjct: 405 RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQ 464
Query: 1439 REAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXX 1260
REAVK+ P++QLEPVF+AL+TLGNTKWR+N+++L ++DRIWA+GG+LADLVDR
Sbjct: 465 REAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPE 524
Query: 1259 XXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRG 1080
+I+KW+W VK VKKEN ERHSQRCD ELKL VARKMKDE+GFYYPHNLDFRG
Sbjct: 525 EPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRG 584
Query: 1079 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSF 900
RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL W+KI LANVYGGGVDKLSYEGRV+F
Sbjct: 585 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAF 644
Query: 899 TENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNPXXAWS 744
+EN++EDIFDSA+RPLEG+RWWLGAEDPFQCLATC+++AEALRSP+P A S
Sbjct: 645 SENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAIS 696
Score = 431 bits (1109), Expect(2) = 0.0
Identities = 216/250 (86%), Positives = 228/250 (91%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL AGDKPADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQ
Sbjct: 720 LGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQ 779
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM
Sbjct: 780 TVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIM 839
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAKIIAMEN PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 840 SWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQ 899
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC ++GL FAGVHDSYWTHA DVD MN+ILREKFVELY
Sbjct: 900 RTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELY 959
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 960 DAPILENLLE 969
>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1B; Flags: Precursor
Length = 1002
Score = 821 bits (2121), Expect(2) = 0.0
Identities = 391/532 (73%), Positives = 449/532 (84%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA
Sbjct: 165 KYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQ+LC + +AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA ++GEAI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAI 284
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 1800
EHE RIH+FLE +K+ NAL+ +E KE+ERL VR+IV +Q
Sbjct: 285 EHEARIHRFLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQ 344
Query: 1799 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSK 1620
DD K WGQ+ +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+
Sbjct: 345 DDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSR 404
Query: 1619 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 1440
RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++G YLFLPSYIMRTHGA+QQ
Sbjct: 405 RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQ 464
Query: 1439 REAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXX 1260
REAVK+ P++QLEPVF+AL+TLGNTKWRVN+++L ++DRIWA+GG+LADLVDR
Sbjct: 465 REAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPE 524
Query: 1259 XXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRG 1080
EI+KW+W VK VKKEN ERHSQRCD ELKL VARKMKDE+GFYYPHNLDFRG
Sbjct: 525 APDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRG 584
Query: 1079 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSF 900
RAYPMHPYLNHLGSDLCRGILEFAEGRPLG SGL W+KI LANVYGGGVDKLSYEGRV+F
Sbjct: 585 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAF 644
Query: 899 TENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNPXXAWS 744
+EN+LEDIFDSA+RPLEG+RWWLGAEDPFQCLATC+++AEALRSP+P A S
Sbjct: 645 SENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAIS 696
Score = 434 bits (1116), Expect(2) = 0.0
Identities = 216/250 (86%), Positives = 229/250 (91%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL AGDKPADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQ
Sbjct: 720 LGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQ 779
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIK+RLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM
Sbjct: 780 TVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIM 839
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAKIIAMEN PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 840 SWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQ 899
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC ++GL FAGVHDSYWTHACDVD MN+ILREKFVELY
Sbjct: 900 RTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELY 959
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 960 DAPILENLLE 969
>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 819 bits (2116), Expect(2) = 0.0
Identities = 390/532 (73%), Positives = 449/532 (84%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA
Sbjct: 165 KYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQ+LC + +AP+FDQLPA+MMAVITMHKLM LLMTGG RV+QAA ++GEAI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAI 284
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 1800
EHE RIH+FLE +K+ NAL+ +E KE+ERL VR+IV +Q
Sbjct: 285 EHEARIHRFLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQ 344
Query: 1799 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSK 1620
DD K WGQ+ +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+
Sbjct: 345 DDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSR 404
Query: 1619 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 1440
RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++G YLFLPSYIMRTHGA+QQ
Sbjct: 405 RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQ 464
Query: 1439 REAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXX 1260
REAVK+ P++QLEPVF+AL+TLGNTKWRVN+++L +++RIWA+GG+LADLVDR
Sbjct: 465 REAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPE 524
Query: 1259 XXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRG 1080
EI+KW+W VK VKKEN ERHSQRCD ELKL VARKMKDE+GFYYPHNLDFRG
Sbjct: 525 APDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRG 584
Query: 1079 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSF 900
RAYPMHPYLNHLGSDLCRGILEFAEGRPLG SGL W+KI LANVYGGGVDKLSYEGRV+F
Sbjct: 585 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAF 644
Query: 899 TENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNPXXAWS 744
+EN+LEDIFDSA+RPLEG+RWWLGAEDPFQCLATC+++AEALRSP+P A S
Sbjct: 645 SENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAIS 696
Score = 434 bits (1116), Expect(2) = 0.0
Identities = 216/250 (86%), Positives = 229/250 (91%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL AGDKPADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQ
Sbjct: 720 LGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQ 779
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIK+RLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM
Sbjct: 780 TVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIM 839
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAKIIAMEN PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 840 SWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQ 899
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC ++GL FAGVHDSYWTHACDVD MN+ILREKFVELY
Sbjct: 900 RTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELY 959
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 960 DAPILENLLE 969
>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 819 bits (2115), Expect(2) = 0.0
Identities = 388/532 (72%), Positives = 449/532 (84%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN LRRRQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA
Sbjct: 165 KYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQ+LC + AP+FDQLPA+MMAVITMHKLM LMTGG RV+QAA H+GEAI
Sbjct: 225 EQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAI 284
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 1800
EHE RIH+FLE +K+ NAL+ ++ KE+ER+ VR+IV +Q
Sbjct: 285 EHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQ 344
Query: 1799 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSVETGKTSK 1620
DD K WGQ+ +KVGCRLIQILM+TAYIQPP DQ++D PPDIRPAFVH LK+VET K S+
Sbjct: 345 DDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSR 404
Query: 1619 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 1440
RYGVI+CDP+VRKGL+KTA+HMVIPYMPMLVPP +W GY++GAYLFLPSYIMRTHGA+QQ
Sbjct: 405 RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQ 464
Query: 1439 REAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXX 1260
REAVK+ P++QLEPVF+AL+TLGNTKWR+N+++L ++DRIWA+GG+LADLVDR
Sbjct: 465 REAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPE 524
Query: 1259 XXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRG 1080
+I+KW+W VK VKKEN ERHSQRCD ELKL VARKMKDE+GFYYPHNLDFRG
Sbjct: 525 EPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRG 584
Query: 1079 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSF 900
RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL W+KI LANVYGGGVDKLSYEGRV+F
Sbjct: 585 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAF 644
Query: 899 TENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNPXXAWS 744
+EN++EDIFDSA+RPLEG+RWWLGAEDPFQCLATC+++AEALRSP+P A S
Sbjct: 645 SENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAIS 696
Score = 431 bits (1109), Expect(2) = 0.0
Identities = 216/250 (86%), Positives = 228/250 (91%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL AGDKPADVYSGIAARVL+IMK DAA DPA DPN ARLLI+QVDRKLVKQ
Sbjct: 720 LGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQ 779
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER I+DD+E+FA ACYAAKTTLTALGEMFEAARSIM
Sbjct: 780 TVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIM 839
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAKIIAMEN PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 840 SWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQ 899
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC ++GL FAGVHDSYWTHA DVD MN+ILREKFVELY
Sbjct: 900 RTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELY 959
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 960 DAPILENLLE 969
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 817 bits (2110), Expect(2) = 0.0
Identities = 391/529 (73%), Positives = 444/529 (83%), Gaps = 2/529 (0%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
K+N LRRRQIK+ETEAWEEAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IAA
Sbjct: 139 KHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAA 198
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQ+LCK +APYFD LPADMMAVITMHKLM LLMTG RV+QAA H+GEAI
Sbjct: 199 EQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAI 258
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQ 1800
EHEVRI +F+E +K+K+A + D +P KEQE+L VR+IV RQ
Sbjct: 259 EHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQ 318
Query: 1799 DDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKT 1626
DD K WGQ+A +KVG RLI++L++TAYIQPP DQ+ D PPDIRPAFVH LK+V ET K
Sbjct: 319 DDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKG 378
Query: 1625 SKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGAR 1446
++RYGVIECDP+VRKGLEKTA+HMVIPYMPMLVPPLNWTGY++GAYLFLPSY+MR HGAR
Sbjct: 379 TRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGAR 438
Query: 1445 QQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXX 1266
QQREA+K+APR+ LEP F+ALNTLGNTKWR+NKR+L VIDRIWA+GG+LADLVDR
Sbjct: 439 QQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPL 498
Query: 1265 XXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDF 1086
EI+KW+W V++VKKENSERHSQRCD ELKL VARKMKDE+GF+YPHNLDF
Sbjct: 499 PEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDF 558
Query: 1085 RGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRV 906
RGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGL W+KI LANVY GGVDKLSYEGRV
Sbjct: 559 RGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRV 618
Query: 905 SFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
+FTEN+LEDIFDSADRPLEGRRWWL AEDPFQCLATC++L+EALRS +P
Sbjct: 619 AFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSP 667
Score = 421 bits (1082), Expect(2) = 0.0
Identities = 210/250 (84%), Positives = 224/250 (89%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL AG+KPADVYSGIAARVL+IM+ DA DPA +PNA ARLLI QVDRKLVKQ
Sbjct: 696 LGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQ 755
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER AI D+ E+F+ +CYAAKTTLTALGEMFEAARSIM
Sbjct: 756 TVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIM 815
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAK+IA EN PVRW TPLGLPVVQPYRKLG+ +IKTSLQ L+LQRETDKVM KRQ
Sbjct: 816 SWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQ 875
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC KAGL FAGVHDSYWTHACDVD MN+ILREKFVELY
Sbjct: 876 RTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY 935
Query: 31 EQPILENLLE 2
PILENLLE
Sbjct: 936 GMPILENLLE 945
>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
gi|462422319|gb|EMJ26582.1| hypothetical protein
PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 798 bits (2060), Expect(2) = 0.0
Identities = 386/545 (70%), Positives = 447/545 (82%), Gaps = 18/545 (3%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN LR+RQIK+ETEAW+EAAKEYQELL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA
Sbjct: 151 KYNLLRKRQIKLETEAWQEAAKEYQELLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAA 210
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTG-GCRNGVRVIQAAGHVGEA 1983
+Q+ CK + +HAPYFD LPAD MAVITMHKLM LLMT G VRV+QAA +GEA
Sbjct: 211 DQDSCKQPNSRQSHAPYFDHLPADKMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEA 270
Query: 1982 IEHEVRIHKFLE-TSKRKNALNRTCD--------------EERDPAAKEQERLTXXXXXX 1848
IEHEVRIH+FLE T K+KN +++ + +E++ KEQERL
Sbjct: 271 IEHEVRIHRFLEKTKKKKNTIDKKAEADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKL 330
Query: 1847 XXXXXXXXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRP 1668
VR IV Q+DLK WGQEA +KVGCRLIQ+LMDTAYIQPP+DQ+ D PPDIRP
Sbjct: 331 IKRQKMQQVRGIVKEQEDLKPWGQEAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRP 390
Query: 1667 AFVHALKSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERG 1494
AFVH LK++ +T KTS+RYGVIECDPIVRKG+EKTA+HMV+PYMPMLVPP+NWTGY+RG
Sbjct: 391 AFVHNLKTITRDTQKTSRRYGVIECDPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRG 450
Query: 1493 AYLFLPSYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWA 1314
AYLFLPSY+MRTHGA+QQRE VK+ PR+QLEPVF+AL+TLG+TKWRVNKR+L VIDRIWA
Sbjct: 451 AYLFLPSYVMRTHGAKQQREVVKRTPRKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWA 510
Query: 1313 NGGQLADLVDRXXXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVAR 1134
+GG+LADLVDR EI+KW+W +KA KKENSERHSQRCD ELKL +R
Sbjct: 511 SGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKLKAAKKENSERHSQRCDIELKLAASR 570
Query: 1133 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLA 954
KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD+CRGILEF+EGR LGKSGL W+KI LA
Sbjct: 571 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDMCRGILEFSEGRHLGKSGLRWLKIHLA 630
Query: 953 NVYGGGVDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEAL 774
N+Y GGVDKLS++ R +FTEN++++IFDSADRPLEGRRWWLGAEDPFQCLA C++L EAL
Sbjct: 631 NLYAGGVDKLSFDDRAAFTENHVDEIFDSADRPLEGRRWWLGAEDPFQCLAACINLCEAL 690
Query: 773 RSPNP 759
RSP+P
Sbjct: 691 RSPSP 695
Score = 427 bits (1097), Expect(2) = 0.0
Identities = 210/250 (84%), Positives = 227/250 (90%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL GDKPADVYSGIAARVL+IM+ DA DPA +PNA HARLLI+QVDRKLVKQ
Sbjct: 724 LGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQVDRKLVKQ 783
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTY+GARDQIKRRLKER +I DD+ +FA ACYAA+TTLTALGEMFEAARSIM
Sbjct: 784 TVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAARSIM 843
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLG+CAK+IA ENQPVRW TPLGLPVVQPYR+LG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 844 SWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMVKRQ 903
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC KAGL FAGVHDSYWTHACD+D MN+ILREKFVELY
Sbjct: 904 RTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILREKFVELY 963
Query: 31 EQPILENLLE 2
E PILENLLE
Sbjct: 964 EAPILENLLE 973
>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 862
Score = 785 bits (2028), Expect(2) = 0.0
Identities = 387/543 (71%), Positives = 440/543 (81%), Gaps = 11/543 (2%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KY L+RRQ+K+ETEAWE+ A+EYQE+L DMCEQKLAPNLPYVKSLFLGWFEPLRDAI A
Sbjct: 15 KYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAILA 74
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTG-GCRNGVRVIQAAGHVGEA 1983
EQELCK +SR H YF+ LPADMMAVITMHKLM LLMTG G +RV+QAA VGEA
Sbjct: 75 EQELCKVNSR-VPHRAYFNDLPADMMAVITMHKLMGLLMTGNGGTASIRVVQAASVVGEA 133
Query: 1982 IEHEVRIHKFLETSKRKNALNRTCDEERDPAA--------KEQERLTXXXXXXXXXXXXX 1827
IE+E +IHKFLE +K++ L E AA KEQE+L
Sbjct: 134 IENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRKKVTTLMKKQKVH 193
Query: 1826 XVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALK 1647
VRRIV DD WGQEA LKVG RLIQ++++TAYIQPP+DQ+ D PPDIRPAFVH LK
Sbjct: 194 QVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLK 253
Query: 1646 SV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPS 1473
++ +T K+S+RYGVIECDP+VRKGLEK+A+HMVIPYMPMLVPPLNWTGY++GAY FLPS
Sbjct: 254 TITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAYFFLPS 313
Query: 1472 YIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLAD 1293
Y+MR HGA+QQR A+K+A R QLEPVFKAL+TLGNTKWRVNKRIL VIDRIWA+GG LA
Sbjct: 314 YVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLGNTKWRVNKRILGVIDRIWASGGHLAG 373
Query: 1292 LVDRXXXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEG 1113
LVDR EI+KWRW VK+VKKENSERHSQRCD ELKL VARKMKDEEG
Sbjct: 374 LVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKKENSERHSQRCDVELKLAVARKMKDEEG 433
Query: 1112 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGV 933
FYYPHN+DFRGRAYPMHPYLNHLGSD+CRGILEFAEGRPLGKSGL W+KI LAN+Y GGV
Sbjct: 434 FYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGV 493
Query: 932 DKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNPXX 753
DKLSY+GR+SFTEN+L+DIFDSADRPLEG+RWWLGAEDPFQCLA C++L+EALRSP+P
Sbjct: 494 DKLSYDGRISFTENHLDDIFDSADRPLEGQRWWLGAEDPFQCLAVCINLSEALRSPSPET 553
Query: 752 AWS 744
A S
Sbjct: 554 AIS 556
Score = 416 bits (1069), Expect(2) = 0.0
Identities = 205/250 (82%), Positives = 224/250 (89%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL G KPADVYSGIAARVL+IM+ DA DPAI+PN+ HA+LLI+QVDRKLVKQ
Sbjct: 580 LGAAAVNLVGGGKPADVYSGIAARVLDIMRRDAENDPAINPNSVHAKLLINQVDRKLVKQ 639
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER I DD ++++ ACYAAKTTLTAL EMFE AR IM
Sbjct: 640 TVMTSVYGVTYIGARDQIKRRLKERCNIADDPQLYSAACYAAKTTLTALEEMFEGARGIM 699
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLG+CAK+IA ENQPV+WTTP GLPVVQPYR+LG+Q+IKTSLQ LTLQRETDKVM KRQ
Sbjct: 700 AWLGECAKVIASENQPVQWTTPFGLPVVQPYRQLGRQLIKTSLQVLTLQRETDKVMVKRQ 759
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC +AGL FAGVHDSYWTHACDVD MN+ILREKFVELY
Sbjct: 760 RTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY 819
Query: 31 EQPILENLLE 2
E PILENLLE
Sbjct: 820 ETPILENLLE 829
>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
gi|550332836|gb|EEE88785.2| hypothetical protein
POPTR_0008s11200g [Populus trichocarpa]
Length = 988
Score = 782 bits (2020), Expect(2) = 0.0
Identities = 386/543 (71%), Positives = 444/543 (81%), Gaps = 11/543 (2%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KY L+RRQIK+ETEAWE+AA+EYQE+L DMCEQKLAPNLPYVKSLFLGWFEPLRDAI A
Sbjct: 141 KYAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVA 200
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTG-GCRNGVRVIQAAGHVGEA 1983
EQELCK + R +H +F LPADMMAVITMHKLM LLMTG G +RV+QAA VGEA
Sbjct: 201 EQELCKRNLR-VSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASIRVVQAASVVGEA 259
Query: 1982 IEHEVRIHKFLE-TSKRKNALNRTCDEERDPA-------AKEQERLTXXXXXXXXXXXXX 1827
IEHE RIHKFLE T KRKN + + E D A +KEQE+L
Sbjct: 260 IEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQEKLRKKVTTLIKKQKVQ 319
Query: 1826 XVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALK 1647
VRRIV DD + WGQE +KVG RLIQ++++TAYIQPP+DQ+ D PPDIRPAFVH LK
Sbjct: 320 QVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLK 379
Query: 1646 SV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPS 1473
++ +T K+S+RYGVIECDP+VRKGLEK+A+HMVIPYMPMLVPPLNWTGY++GA+LFLPS
Sbjct: 380 TITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAHLFLPS 439
Query: 1472 YIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLAD 1293
Y+MR HG++QQR+AVK+A R QLEPVFKAL+TLGNTKWR+NKR+L V+DRIWA+GG LA
Sbjct: 440 YVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKWRINKRVLVVVDRIWASGGHLAG 499
Query: 1292 LVDRXXXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEG 1113
LVDR EI+KW W V++VKKENSERHSQRCD ELKL VARKMKDEEG
Sbjct: 500 LVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSERHSQRCDIELKLAVARKMKDEEG 559
Query: 1112 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGV 933
FYYPHNLDFRGRAYPMHPYLNHLGSD+CRGILEFAEGRPLGKSGL W+KI LAN+Y GGV
Sbjct: 560 FYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGV 619
Query: 932 DKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNPXX 753
DKLSY+GR+SFTEN+L+DIFDSAD+PLEGRRWWLGAEDPFQCLA C++L+EALRSP+P
Sbjct: 620 DKLSYDGRISFTENHLDDIFDSADQPLEGRRWWLGAEDPFQCLAACINLSEALRSPSPET 679
Query: 752 AWS 744
A S
Sbjct: 680 ATS 682
Score = 412 bits (1058), Expect(2) = 0.0
Identities = 202/250 (80%), Positives = 223/250 (89%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL G+KPADVYSGIA RVL+IM+ DA DPAI+PN+ HA+LL++QVDRKLVKQ
Sbjct: 706 LGAAAVNLVGGEKPADVYSGIATRVLDIMQRDAEKDPAINPNSVHAKLLVNQVDRKLVKQ 765
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER I DD ++++ ACYAAKTTL AL EMFE AR IM
Sbjct: 766 TVMTSVYGVTYIGARDQIKRRLKERCIIADDPQLYSAACYAAKTTLMALEEMFEGARGIM 825
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLG+CAK+IA ENQPVRWTTPLGLPVVQPYR+LG+ +IKTSLQ LTL+RETDKVM KRQ
Sbjct: 826 AWLGECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLKRETDKVMVKRQ 885
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC +AGL FAGVHDSYWTHACDVD MN+ILREKFVELY
Sbjct: 886 RTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY 945
Query: 31 EQPILENLLE 2
E PILENLLE
Sbjct: 946 EAPILENLLE 955
>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|48716846|dbj|BAD23544.1| putative phage-type RNA
polymerase [Oryza sativa Japonica Group]
gi|215694941|dbj|BAG90132.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 951
Score = 779 bits (2011), Expect(2) = 0.0
Identities = 371/533 (69%), Positives = 440/533 (82%), Gaps = 6/533 (1%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KY LRRRQI++ETEAWE+AA+EY+ELL DMC+QKLAPNLPYVKSLFLGWFEPLRD I A
Sbjct: 176 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 235
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQEL + +HA YF+ LPADMMAVITMHKLM LLMTG VRVIQAA +GEAI
Sbjct: 236 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 295
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPA----AKEQERLTXXXXXXXXXXXXXXVRRI 1812
EHEVRIHKFLE +K+K+ N+ D E + AKEQERL VR I
Sbjct: 296 EHEVRIHKFLEKTKKKS--NKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNI 353
Query: 1811 VSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--E 1638
V +QD+ K WGQ+A KVG RLI+++++TAYIQPP Q D PPDIRPAF H +++V E
Sbjct: 354 VKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE 413
Query: 1637 TGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRT 1458
K+S+RYGVI+CDP+VR+GL++TAKHMVIPYMPML+PP++WTGY++GA+LFLPSY+MRT
Sbjct: 414 QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRT 473
Query: 1457 HGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRX 1278
HGARQQR+AV++APREQ++ VF+ALNTLG+TKWRVNKR+LS++DRIW++GG+LADLVDR
Sbjct: 474 HGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRT 533
Query: 1277 XXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPH 1098
++KKWRW ++A KKENSERHSQRCD ELKL VARKMKDE+GFYYPH
Sbjct: 534 DVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPH 593
Query: 1097 NLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSY 918
NLDFRGRAYPMHPYLNHLGSDLCRG+LEFAEGRPLGKSGL W+KI LAN+Y GGVDKLSY
Sbjct: 594 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSY 653
Query: 917 EGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
+GR++FTEN+LEDIFDSADRPLEG+RWWLGAEDPFQCLA C++L EALRSP+P
Sbjct: 654 DGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSP 706
Score = 347 bits (890), Expect(2) = 0.0
Identities = 172/214 (80%), Positives = 189/214 (88%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGA AVNL AG+KPADVY+GIA RV+EIMK DA DPA DP+A ARLL+DQVDRKLVKQ
Sbjct: 735 LGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQ 794
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTY+GAR+QIKRRLKER I DDSE+F+ +CYAAK TLTALGEMF+AARSIM
Sbjct: 795 TVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIM 854
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAK+IA EN+PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 855 NWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQ 914
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGV 110
R+AFPPNFVHSLD SHMMMTA AC + GL FA V
Sbjct: 915 RTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAVV 948
>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
single subunit RNA polymerase [Oryza sativa Japonica
Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
sativa Japonica Group]
Length = 1017
Score = 779 bits (2011), Expect(2) = 0.0
Identities = 371/533 (69%), Positives = 440/533 (82%), Gaps = 6/533 (1%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KY LRRRQI++ETEAWE+AA+EY+ELL DMC+QKLAPNLPYVKSLFLGWFEPLRD I A
Sbjct: 176 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 235
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQEL + +HA YF+ LPADMMAVITMHKLM LLMTG VRVIQAA +GEAI
Sbjct: 236 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 295
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPA----AKEQERLTXXXXXXXXXXXXXXVRRI 1812
EHEVRIHKFLE +K+K+ N+ D E + AKEQERL VR I
Sbjct: 296 EHEVRIHKFLEKTKKKS--NKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNI 353
Query: 1811 VSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--E 1638
V +QD+ K WGQ+A KVG RLI+++++TAYIQPP Q D PPDIRPAF H +++V E
Sbjct: 354 VKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE 413
Query: 1637 TGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRT 1458
K+S+RYGVI+CDP+VR+GL++TAKHMVIPYMPML+PP++WTGY++GA+LFLPSY+MRT
Sbjct: 414 QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRT 473
Query: 1457 HGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRX 1278
HGARQQR+AV++APREQ++ VF+ALNTLG+TKWRVNKR+LS++DRIW++GG+LADLVDR
Sbjct: 474 HGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRT 533
Query: 1277 XXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPH 1098
++KKWRW ++A KKENSERHSQRCD ELKL VARKMKDE+GFYYPH
Sbjct: 534 DVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPH 593
Query: 1097 NLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSY 918
NLDFRGRAYPMHPYLNHLGSDLCRG+LEFAEGRPLGKSGL W+KI LAN+Y GGVDKLSY
Sbjct: 594 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSY 653
Query: 917 EGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
+GR++FTEN+LEDIFDSADRPLEG+RWWLGAEDPFQCLA C++L EALRSP+P
Sbjct: 654 DGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSP 706
Score = 421 bits (1083), Expect(2) = 0.0
Identities = 206/250 (82%), Positives = 225/250 (90%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGA AVNL AG+KPADVY+GIA RV+EIMK DA DPA DP+A ARLL+DQVDRKLVKQ
Sbjct: 735 LGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQ 794
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTY+GAR+QIKRRLKER I DDSE+F+ +CYAAK TLTALGEMF+AARSIM
Sbjct: 795 TVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIM 854
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAK+IA EN+PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 855 NWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQ 914
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC + GL FAGVHDSYWTHACDVDTMN+ILREKFVELY
Sbjct: 915 RTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELY 974
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 975 DTPILENLLE 984
>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
DNA-directed RNA polymerase 2, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 997
Score = 779 bits (2011), Expect(2) = 0.0
Identities = 381/539 (70%), Positives = 436/539 (80%), Gaps = 12/539 (2%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KY L++RQIK+ETEAWEEAA+EYQELL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA
Sbjct: 148 KYTILKKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAK 207
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNG-VRVIQAAGHVGEA 1983
EQEL ++ + +H PYFD LPADMMAVITMHKLM LLMT NG VRV+QAA VGEA
Sbjct: 208 EQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLLMTTNGGNGSVRVVQAACAVGEA 267
Query: 1982 IEHEVRIHKFLETSKRKNALNRTCDEE---------RDPAAKEQERLTXXXXXXXXXXXX 1830
IEHE RIH+FLE +K+K + + E + AKEQE+L
Sbjct: 268 IEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAEKLAKEQEKLRKKVTELMKKQKV 327
Query: 1829 XXVRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHAL 1650
VR + DD WGQEAQ+KVGCRLIQ+L++TAYIQPP++Q+ D PDIRPAF+H L
Sbjct: 328 QQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQLGDGLPDIRPAFMHTL 387
Query: 1649 KSV--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLP 1476
K+V +T KTS+RYGVIECDPIVR GLEK+A+HMVIPYMPMLVPPLNW GY++GAYLFLP
Sbjct: 388 KNVMKDTQKTSRRYGVIECDPIVRNGLEKSARHMVIPYMPMLVPPLNWEGYDQGAYLFLP 447
Query: 1475 SYIMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLA 1296
SY+MRTHGA+QQR AVK+ P +QLEPV++ALNTLGNTKWR+NK+IL+V+DRIWANGG+LA
Sbjct: 448 SYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTLGNTKWRINKKILTVVDRIWANGGRLA 507
Query: 1295 DLVDRXXXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEE 1116
L+DR EIKKW+W VK VKKENSERHSQRCD ELKL VARKMKDE+
Sbjct: 508 GLIDREDEPLPEELETEDENEIKKWKWKVKNVKKENSERHSQRCDIELKLAVARKMKDED 567
Query: 1115 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGG 936
GFYYPHNLDFRGRAYPMHP+LNHLGSD+CRGILEFAEGRPLGKSG W+KI LANVY GG
Sbjct: 568 GFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGKSGFRWLKIHLANVYAGG 627
Query: 935 VDKLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
VDKLSYEGRV+FTEN+L+ IFDSADRPLEGRRWWLGAEDPFQCLATC +LAEA RS +P
Sbjct: 628 VDKLSYEGRVAFTENHLDYIFDSADRPLEGRRWWLGAEDPFQCLATCFNLAEAFRSSSP 686
Score = 410 bits (1055), Expect(2) = 0.0
Identities = 200/250 (80%), Positives = 222/250 (88%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAAAVNL +G+KPADVYSGIAARVL+IM+TDA DP +PNA HA+LLI++VDRKLVKQ
Sbjct: 715 LGAAAVNLVSGEKPADVYSGIAARVLDIMRTDAEKDPGTNPNALHAKLLINEVDRKLVKQ 774
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER A+ DD ++A +CYAAKTTL AL EMFE ARSIM
Sbjct: 775 TVMTSVYGVTYIGARDQIKRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSIM 834
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLG+CAK+IA ENQPV+WTTPLGLPVVQPYR+LG+ +IKTSLQ L LQ+ETDK+M KRQ
Sbjct: 835 AWLGECAKVIASENQPVQWTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQ 894
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC AGL FAGVHDSYWTHACDVD MN+ILRE FVELY
Sbjct: 895 RTAFPPNFVHSLDGSHMMMTAVACKHAGLNFAGVHDSYWTHACDVDEMNRILRENFVELY 954
Query: 31 EQPILENLLE 2
E PILENLLE
Sbjct: 955 EAPILENLLE 964
>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 779 bits (2011), Expect(2) = 0.0
Identities = 371/533 (69%), Positives = 440/533 (82%), Gaps = 6/533 (1%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KY LRRRQI++ETEAWE+AA+EY+ELL DMC+QKLAPNLPYVKSLFLGWFEPLRD I A
Sbjct: 142 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 201
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQEL + +HA YF+ LPADMMAVITMHKLM LLMTG VRVIQAA +GEAI
Sbjct: 202 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 261
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPA----AKEQERLTXXXXXXXXXXXXXXVRRI 1812
EHEVRIHKFLE +K+K+ N+ D E + AKEQERL VR I
Sbjct: 262 EHEVRIHKFLEKTKKKS--NKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNI 319
Query: 1811 VSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--E 1638
V +QD+ K WGQ+A KVG RLI+++++TAYIQPP Q D PPDIRPAF H +++V E
Sbjct: 320 VKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE 379
Query: 1637 TGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRT 1458
K+S+RYGVI+CDP+VR+GL++TAKHMVIPYMPML+PP++WTGY++GA+LFLPSY+MRT
Sbjct: 380 QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRT 439
Query: 1457 HGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRX 1278
HGARQQR+AV++APREQ++ VF+ALNTLG+TKWRVNKR+LS++DRIW++GG+LADLVDR
Sbjct: 440 HGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRT 499
Query: 1277 XXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPH 1098
++KKWRW ++A KKENSERHSQRCD ELKL VARKMKDE+GFYYPH
Sbjct: 500 DVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPH 559
Query: 1097 NLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSY 918
NLDFRGRAYPMHPYLNHLGSDLCRG+LEFAEGRPLGKSGL W+KI LAN+Y GGVDKLSY
Sbjct: 560 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSY 619
Query: 917 EGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
+GR++FTEN+LEDIFDSADRPLEG+RWWLGAEDPFQCLA C++L EALRSP+P
Sbjct: 620 DGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSP 672
Score = 421 bits (1083), Expect(2) = 0.0
Identities = 206/250 (82%), Positives = 225/250 (90%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGA AVNL AG+KPADVY+GIA RV+EIMK DA DPA DP+A ARLL+DQVDRKLVKQ
Sbjct: 701 LGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQ 760
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTY+GAR+QIKRRLKER I DDSE+F+ +CYAAK TLTALGEMF+AARSIM
Sbjct: 761 TVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIM 820
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAK+IA EN+PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 821 NWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQ 880
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC + GL FAGVHDSYWTHACDVDTMN+ILREKFVELY
Sbjct: 881 RTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELY 940
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 941 DTPILENLLE 950
>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
X2 [Oryza brachyantha]
Length = 839
Score = 774 bits (1999), Expect(2) = 0.0
Identities = 369/527 (70%), Positives = 434/527 (82%), Gaps = 4/527 (0%)
Frame = -1
Query: 2327 LRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQEL 2148
LRRRQ+++ETEAWE+AAKEY+ELL DMCE KLAPNLPYVKSLFLGWFEPLRD I AEQ+L
Sbjct: 2 LRRRQVQIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQDL 61
Query: 2147 CKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAIEHEV 1968
+ +HA YF+ LPADMMAVITMHKLM LLMTG VRVIQAA +GEAIEHEV
Sbjct: 62 VCERRARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEV 121
Query: 1967 RIHKFLETSKRKNALNRTCDEER--DPAAKEQERLTXXXXXXXXXXXXXXVRRIVSRQDD 1794
R+HKFLE K+K + +EE AKEQERL VR IV +QD+
Sbjct: 122 RLHKFLEKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKVTDLMKKHKLRQVRYIVKKQDN 181
Query: 1793 LKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV--ETGKTSK 1620
K WGQ+ KVG RLI+++++TAYIQPP Q D PPDIRPAF H +++V E K+S+
Sbjct: 182 SKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSR 241
Query: 1619 RYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMRTHGARQQ 1440
RYGVI+CDP+VR+GL++TAKHMVIPYMPML+PP++WTGY++GA+LFLPSY+MRTHGARQQ
Sbjct: 242 RYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQ 301
Query: 1439 REAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDRXXXXXXX 1260
REAVK+APREQ++ VF+AL+TLG+TKWRVNKR+LS++DRIW++GG+LADLVDR
Sbjct: 302 REAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPE 361
Query: 1259 XXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYPHNLDFRG 1080
++KKWRWN+KA KKENSERHSQRCD ELKL VARKMKDEEGFYYPHNLDFRG
Sbjct: 362 KPDTEDEAKLKKWRWNLKAAKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRG 421
Query: 1079 RAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLSYEGRVSF 900
RAYPMHPYLNHLGSDLCRG+LEFAEGRPLGKSGL W+KI LAN+Y GGVDKLSY+GR++F
Sbjct: 422 RAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAF 481
Query: 899 TENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
TEN+LEDIFDSADRPLEG+RWWLGAEDPFQCLA C++L EALRSP+P
Sbjct: 482 TENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSP 528
Score = 419 bits (1077), Expect(2) = 0.0
Identities = 204/249 (81%), Positives = 224/249 (89%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGA AVNL AG+KPADVY+GIA RVLEIM+ DA DPA DP+A AR+L+DQVDRKLVKQ
Sbjct: 557 LGAIAVNLVAGEKPADVYTGIATRVLEIMRNDALKDPATDPDAARARMLVDQVDRKLVKQ 616
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTY+GAR+QIKRRLKER I DDSE+F+ +CYAAK TLTALGEMF+AARSIM
Sbjct: 617 TVMTSVYGVTYVGAREQIKRRLKERDMIGDDSELFSASCYAAKVTLTALGEMFQAARSIM 676
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAKIIA EN+PV+WTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 677 NWLGDCAKIIACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQ 736
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC + GL FAGVHDSYWTHACDVDTMN+ILREKFVELY
Sbjct: 737 RTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELY 796
Query: 31 EQPILENLL 5
+ PILENLL
Sbjct: 797 DTPILENLL 805
>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein
SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 772 bits (1994), Expect(2) = 0.0
Identities = 370/534 (69%), Positives = 438/534 (82%), Gaps = 7/534 (1%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
+Y +LRRRQI+VETEAWE+AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD I
Sbjct: 134 RYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLRDQIVT 193
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGCRNGVRVIQAAGHVGEAI 1980
EQEL D +H PYF+ LPADMMAVITMHKLM LLMTG VRVIQAA +GEAI
Sbjct: 194 EQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 253
Query: 1979 EHEVRIHKFLETSKRKNALNRTCDEERDPA-----AKEQERLTXXXXXXXXXXXXXXVRR 1815
EHEVRI++FLE +++K+ N+ ++E + A AKEQ+RL VR
Sbjct: 254 EHEVRINRFLEKTRKKS--NKEMEKEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQVRN 311
Query: 1814 IVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKSV-- 1641
IV QD+ + WGQ+ Q KVG RLI++ MDTA+IQPP Q D PDIRPAF H +++V
Sbjct: 312 IVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTVAK 371
Query: 1640 ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSYIMR 1461
E K+S+RYGVI+CDP+VR+GL++TAKHMVIPYMPML+PP+ WTGY++GA+LFLPSY+MR
Sbjct: 372 EQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMR 431
Query: 1460 THGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADLVDR 1281
THGARQQREAVK+APREQ++ VF+ALNTLG+TKWRVNKR+LS++DRIW++GG+LADLVDR
Sbjct: 432 THGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDR 491
Query: 1280 XXXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGFYYP 1101
IK W+W++++VKKENSERHSQRCD ELKL VARKMKDEEGFYYP
Sbjct: 492 TDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRCDVELKLAVARKMKDEEGFYYP 551
Query: 1100 HNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVDKLS 921
HNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHW+KI LAN+Y GGVDKLS
Sbjct: 552 HNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLS 611
Query: 920 YEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
Y+GRV+FTEN+LE+IFDSADRPLEG+RWWLGAEDPFQCLA C++L EALRS +P
Sbjct: 612 YDGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSSP 665
Score = 417 bits (1073), Expect(2) = 0.0
Identities = 202/250 (80%), Positives = 223/250 (89%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGA AVNL AG+KPADVY+GIA RVLEIM+ DA DP+IDP+ ARL++DQVDRKLVKQ
Sbjct: 694 LGAIAVNLVAGEKPADVYTGIATRVLEIMRMDAQKDPSIDPDVARARLIVDQVDRKLVKQ 753
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTY+GARDQIKRRLKER I D++E+F +CYAAK TLTALGEMF+AAR IM
Sbjct: 754 TVMTSVYGVTYVGARDQIKRRLKERGVIPDEAELFGASCYAAKVTLTALGEMFQAARGIM 813
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLGDCAK+IA EN+PVRWTTPLGLPVVQPYRKLG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 814 NWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQ 873
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC + GL FAGVHDSYWTHACDVDTMN+ILREKFVELY
Sbjct: 874 RTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELY 933
Query: 31 EQPILENLLE 2
+ PILENLLE
Sbjct: 934 DTPILENLLE 943
>ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase
isoform 3 [Theobroma cacao]
Length = 932
Score = 772 bits (1993), Expect(2) = 0.0
Identities = 368/537 (68%), Positives = 436/537 (81%), Gaps = 10/537 (1%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN L++RQIK+ETEAWEEAAKEYQELL+DMCE KLAPNLPY+KSLFLGWFEPLRD+I
Sbjct: 150 KYNTLKKRQIKIETEAWEEAAKEYQELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVG 209
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGC-RNGVRVIQAAGHVGEA 1983
EQELCK++ R +HA YF++L ADMMAV+TMHKLM LLMT G+RV+QAA +GEA
Sbjct: 210 EQELCKENCR-ISHAAYFNELSADMMAVVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEA 268
Query: 1982 IEHEVRIHKFLETSKRKNALNRTCDEERDPAA-------KEQERLTXXXXXXXXXXXXXX 1824
IEHE +I FL +K+K ++ D E +P K+QE+L
Sbjct: 269 IEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQ 328
Query: 1823 VRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKS 1644
VR+IV D KSWGQEA +KVGCRLIQ+L++ AYIQPP+DQ+ D PPDIRPAFVH+LK+
Sbjct: 329 VRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKT 388
Query: 1643 V--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSY 1470
+ + K S+RYGVIECD +VRKGLEKTA+HMVIPYMPMLVPP NWTGY+RGAYLFLPSY
Sbjct: 389 ITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSY 448
Query: 1469 IMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADL 1290
+MRTHGA+QQRE VK+ PR+QLEP+F+AL+TLGNTKWR+NKR+L V+DR+WANGG++A L
Sbjct: 449 VMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWRINKRVLGVVDRLWANGGRVASL 508
Query: 1289 VDRXXXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGF 1110
VDR EI+KW+W VKA K+N+ERHS RCD ELKL VARKM+DE+GF
Sbjct: 509 VDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERHSLRCDVELKLAVARKMRDEDGF 568
Query: 1109 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVD 930
YYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEFAEGRPLGKSGL W+KI LAN+Y GGVD
Sbjct: 569 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVD 628
Query: 929 KLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
KLSYEGR++FTEN+L+DIFDSADRPLEGRRWWL AEDPFQCLA C++L+EALRS +P
Sbjct: 629 KLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLSAEDPFQCLAACINLSEALRSSSP 685
Score = 353 bits (907), Expect(2) = 0.0
Identities = 175/214 (81%), Positives = 195/214 (91%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAA+VNL AG+KPADVYSGIAARV++IM+ DA DPAI+P+A HARLLI+QVDRKLVKQ
Sbjct: 714 LGAASVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQ 773
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER AI DD+EMF +CYAA+TTLTALGEMF+AARSIM
Sbjct: 774 TVMTSVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIM 833
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLG+CAK+I+ ENQPVRW TPLGLPVVQPYR+LG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 834 NWLGECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQ 893
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGV 110
R+AFPPNFVHSLD SHMMMTA AC KAGL FAG+
Sbjct: 894 RTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGL 927
>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|590698457|ref|XP_007045722.1| DNA-directed RNA
polymerase isoform 1 [Theobroma cacao]
gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
Length = 996
Score = 772 bits (1993), Expect(2) = 0.0
Identities = 368/537 (68%), Positives = 436/537 (81%), Gaps = 10/537 (1%)
Frame = -1
Query: 2339 KYNALRRRQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAA 2160
KYN L++RQIK+ETEAWEEAAKEYQELL+DMCE KLAPNLPY+KSLFLGWFEPLRD+I
Sbjct: 150 KYNTLKKRQIKIETEAWEEAAKEYQELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVG 209
Query: 2159 EQELCKDSSRSTTHAPYFDQLPADMMAVITMHKLMALLMTGGC-RNGVRVIQAAGHVGEA 1983
EQELCK++ R +HA YF++L ADMMAV+TMHKLM LLMT G+RV+QAA +GEA
Sbjct: 210 EQELCKENCR-ISHAAYFNELSADMMAVVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEA 268
Query: 1982 IEHEVRIHKFLETSKRKNALNRTCDEERDPAA-------KEQERLTXXXXXXXXXXXXXX 1824
IEHE +I FL +K+K ++ D E +P K+QE+L
Sbjct: 269 IEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQ 328
Query: 1823 VRRIVSRQDDLKSWGQEAQLKVGCRLIQILMDTAYIQPPLDQMEDAPPDIRPAFVHALKS 1644
VR+IV D KSWGQEA +KVGCRLIQ+L++ AYIQPP+DQ+ D PPDIRPAFVH+LK+
Sbjct: 329 VRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKT 388
Query: 1643 V--ETGKTSKRYGVIECDPIVRKGLEKTAKHMVIPYMPMLVPPLNWTGYERGAYLFLPSY 1470
+ + K S+RYGVIECD +VRKGLEKTA+HMVIPYMPMLVPP NWTGY+RGAYLFLPSY
Sbjct: 389 ITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSY 448
Query: 1469 IMRTHGARQQREAVKKAPREQLEPVFKALNTLGNTKWRVNKRILSVIDRIWANGGQLADL 1290
+MRTHGA+QQRE VK+ PR+QLEP+F+AL+TLGNTKWR+NKR+L V+DR+WANGG++A L
Sbjct: 449 VMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWRINKRVLGVVDRLWANGGRVASL 508
Query: 1289 VDRXXXXXXXXXXXXXXXEIKKWRWNVKAVKKENSERHSQRCDTELKLVVARKMKDEEGF 1110
VDR EI+KW+W VKA K+N+ERHS RCD ELKL VARKM+DE+GF
Sbjct: 509 VDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERHSLRCDVELKLAVARKMRDEDGF 568
Query: 1109 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWMKIQLANVYGGGVD 930
YYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEFAEGRPLGKSGL W+KI LAN+Y GGVD
Sbjct: 569 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVD 628
Query: 929 KLSYEGRVSFTENNLEDIFDSADRPLEGRRWWLGAEDPFQCLATCVSLAEALRSPNP 759
KLSYEGR++FTEN+L+DIFDSADRPLEGRRWWL AEDPFQCLA C++L+EALRS +P
Sbjct: 629 KLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLSAEDPFQCLAACINLSEALRSSSP 685
Score = 424 bits (1091), Expect(2) = 0.0
Identities = 209/250 (83%), Positives = 229/250 (91%)
Frame = -2
Query: 751 LGAAAVNLTAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNAKHARLLIDQVDRKLVKQ 572
LGAA+VNL AG+KPADVYSGIAARV++IM+ DA DPAI+P+A HARLLI+QVDRKLVKQ
Sbjct: 714 LGAASVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQ 773
Query: 571 TVMTSVYGVTYIGARDQIKRRLKERHAIDDDSEMFACACYAAKTTLTALGEMFEAARSIM 392
TVMTSVYGVTYIGARDQIKRRLKER AI DD+EMF +CYAA+TTLTALGEMF+AARSIM
Sbjct: 774 TVMTSVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIM 833
Query: 391 GWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGKQVIKTSLQNLTLQRETDKVMTKRQ 212
WLG+CAK+I+ ENQPVRW TPLGLPVVQPYR+LG+ +IKTSLQ LTLQRETDKVM KRQ
Sbjct: 834 NWLGECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQ 893
Query: 211 RSAFPPNFVHSLDSSHMMMTATACSKAGLYFAGVHDSYWTHACDVDTMNQILREKFVELY 32
R+AFPPNFVHSLD SHMMMTA AC KAGL FAGVHDSYWTHACDVD MN+ILREKFVELY
Sbjct: 894 RTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY 953
Query: 31 EQPILENLLE 2
E PILENLLE
Sbjct: 954 EAPILENLLE 963