BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00017876
         (986 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007210666.1| hypothetical protein PRUPE_ppa022462mg [Prun...   174   1e-60
ref|XP_006392773.1| hypothetical protein EUTSA_v10012229mg [Eutr...   173   9e-59
ref|XP_007052567.1| Gag-pol polyprotein, putative [Theobroma cac...   188   2e-53
ref|XP_007029783.1| Uncharacterized protein TCM_025656 [Theobrom...   184   2e-52
ref|XP_007009850.1| Uncharacterized protein TCM_043155 [Theobrom...   179   6e-50
ref|XP_006402169.1| hypothetical protein EUTSA_v10015409mg, part...   198   3e-48
gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]             164   2e-44
ref|XP_006385239.1| hypothetical protein POPTR_0003s02020g [Popu...   152   1e-43
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             160   3e-43
emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]        166   1e-42
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   163   6e-42
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-...   163   7e-42
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati...   163   7e-42
emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group] gi...   164   3e-41
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The...   147   8e-41
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                 171   5e-40
ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prun...   136   1e-39
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   159   2e-39
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         155   3e-39
ref|XP_007028192.1| Uncharacterized protein TCM_023754 [Theobrom...   166   1e-38

>ref|XP_007210666.1| hypothetical protein PRUPE_ppa022462mg [Prunus persica]
           gi|462406401|gb|EMJ11865.1| hypothetical protein
           PRUPE_ppa022462mg [Prunus persica]
          Length = 606

 Score =  174 bits (441), Expect(2) = 1e-60
 Identities = 92/218 (42%), Positives = 126/218 (57%), Gaps = 7/218 (3%)
 Frame = -2

Query: 640 TSNKCFTCGDPGHRMANCPKKLQSGRAFLTNEVESG-----EYDQPPRYDEEILAHLPEE 476
           T+ +CF CG+ GH MA C K  + G+       E+      +++  P YD E    + EE
Sbjct: 234 TAFRCFKCGETGHCMAECKKSDRVGKGLFIEHDENQLQEYHDFEHGPVYDNEP-NDVVEE 292

Query: 475 HLHGDVGISLVLRRAYFTPRMDD--DAAQRHHLFQSSCTVNGKVCTFIIDSGSCENVISV 302
           ++  D G  L++R+  FTPR  +  D   R+++FQS CT+ GKVC  +ID GSCEN+IS 
Sbjct: 293 YMTEDDGPLLMVRKTCFTPRETEGSDGWLRNNVFQSICTIGGKVCKLVIDPGSCENIISK 352

Query: 301 DAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQLNFSIVDTYSDSIWCDVVPMDACHI 122
           +A+ KL L T  HP PY L+WL++D                      +WC+VVPMDA HI
Sbjct: 353 EAIRKLGLETQPHPHPYKLSWLQKDK---------------------VWCNVVPMDAGHI 391

Query: 121 LLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPSTPH 8
           LLGRPW+FDR VVHDG  NTY+F+    +V L P+  H
Sbjct: 392 LLGRPWEFDRAVVHDGRKNTYSFMLKNIKVTLLPTKEH 429



 Score = 87.0 bits (214), Expect(2) = 1e-60
 Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 6/93 (6%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG+ +V  Y+TEFY L+ R+D+ ET +QL SRYIGG+RV FQD+LNLF+P +V++A Q A
Sbjct: 112 QGNHTVGEYTTEFYELVARSDLAETDEQLESRYIGGMRVQFQDTLNLFDPFSVAKAQQRA 171

Query: 804 ITLEKQFSRNSQL------SSPSNGVGKIVVAP 724
           + LEK  SR +        +SP+N  G    AP
Sbjct: 172 LQLEKHMSRKANSGGAWSGNSPNNRGGGSNSAP 204


>ref|XP_006392773.1| hypothetical protein EUTSA_v10012229mg [Eutrema salsugineum]
           gi|557089351|gb|ESQ30059.1| hypothetical protein
           EUTSA_v10012229mg [Eutrema salsugineum]
          Length = 382

 Score =  173 bits (438), Expect(2) = 9e-59
 Identities = 92/218 (42%), Positives = 124/218 (56%), Gaps = 1/218 (0%)
 Frame = -2

Query: 667 STPLPSRAPTSNKCFTCGDPGHRMANCPKKLQSGRAFLTNEVESGEYDQPPRYDEEILAH 488
           ST   S  P + KC++CG+PGHR   CP   Q  R  L  + E G Y+     DEE    
Sbjct: 123 STLRRSTRPPALKCYSCGEPGHRQTACPN--QQRRGLLLEDTE-GVYNSA---DEEDTGI 176

Query: 487 LPEEHLHGDVGIS-LVLRRAYFTPRMDDDAAQRHHLFQSSCTVNGKVCTFIIDSGSCENV 311
             E    GD     L+LRR    P   ++   R ++F+S+CT+ GK+C  +IDSGS  NV
Sbjct: 177 YEETLTSGDSNAPVLMLRRICLAPVGYEEPWLRTNIFRSTCTIKGKLCNLVIDSGSSRNV 236

Query: 310 ISVDAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQLNFSIVDTYSDSIWCDVVPMDA 131
           +S  AV KL L    HP PY LAW+     V +  R  ++FSI   Y D+I+CD+ PMD 
Sbjct: 237 VSETAVKKLGLKREDHPAPYALAWITEGTDVKITHRALVSFSIGAFYKDTIYCDIAPMDV 296

Query: 130 CHILLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPS 17
            H++LGRPWQFDR   H+G  NTY+F+F   ++VL P+
Sbjct: 297 SHLILGRPWQFDRDTCHNGKKNTYSFVFENRKIVLLPN 334



 Score = 82.0 bits (201), Expect(2) = 9e-59
 Identities = 40/78 (51%), Positives = 54/78 (69%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QGSR+V+ Y+ EFY LLTRN++ +T  QLVSR+IGGLR   Q+SL  F+P TV+EAH+ A
Sbjct: 10  QGSRTVDEYAEEFYLLLTRNELNDTQIQLVSRFIGGLRPQLQNSLTQFDPSTVAEAHRRA 69

Query: 804 ITLEKQFSRNSQLSSPSN 751
           +  E Q    S  ++  N
Sbjct: 70  LAFETQSKAGSSWTNSGN 87


>ref|XP_007052567.1| Gag-pol polyprotein, putative [Theobroma cacao]
           gi|508704828|gb|EOX96724.1| Gag-pol polyprotein,
           putative [Theobroma cacao]
          Length = 794

 Score =  188 bits (478), Expect(2) = 2e-53
 Identities = 101/218 (46%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
 Frame = -2

Query: 652 SRAPTSNK-CFTCGDPGHRMANCPKKLQSGRAFLTNEVESGEYDQPPRYDEEILAHLPEE 476
           +RAP  NK CF C   GH  ++CP +    R     E E  E       D+E+     EE
Sbjct: 289 TRAPNVNKKCFKCQGFGHIASDCPNR----RIISLIEEEVMEEPSLEEVDDELEIFNNEE 344

Query: 475 --HLHGDVGISLVLRRAYFTPRM-DDDAAQRHHLFQSSCTVNGKVCTFIIDSGSCENVIS 305
              +  D G +LV+RR   T  + +D++  RH++F + CT  GKVC  IIDSGSCENVI+
Sbjct: 345 IEEVSADHGEALVVRRNLNTAMLTEDESWLRHNIFHTRCTSQGKVCNVIIDSGSCENVIA 404

Query: 304 VDAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQLNFSIVDTYSDSIWCDVVPMDACH 125
              V KL L T VHP PY L WL++ N V V +R  + FSI + Y D +WCDV+PMDACH
Sbjct: 405 NYMVKKLKLQTEVHPHPYKLQWLRKGNEVKVTKRCCVQFSIGNKYEDEVWCDVIPMDACH 464

Query: 124 ILLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPSTP 11
           +LLGRPWQ+DR   HDG+ NTY+FI  G +++L P  P
Sbjct: 465 LLLGRPWQYDRRAHHDGYKNTYSFIKDGAKIMLTPLKP 502



 Score = 48.5 bits (114), Expect(2) = 2e-53
 Identities = 27/75 (36%), Positives = 43/75 (57%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           Q + +VE Y+ EF  L  + D+ E  +Q V+RY+GGL V   D + L     +++  + A
Sbjct: 178 QKTMTVEEYTMEFEQLHMKCDVHEPEEQTVARYLGGLNVGIADVVQLQPYWNLNDVIRLA 237

Query: 804 ITLEKQFSRNSQLSS 760
           + +EKQ  R S +SS
Sbjct: 238 LKVEKQQLRKSSMSS 252


>ref|XP_007029783.1| Uncharacterized protein TCM_025656 [Theobroma cacao]
           gi|508718388|gb|EOY10285.1| Uncharacterized protein
           TCM_025656 [Theobroma cacao]
          Length = 505

 Score =  184 bits (468), Expect(2) = 2e-52
 Identities = 97/228 (42%), Positives = 131/228 (57%), Gaps = 5/228 (2%)
 Frame = -2

Query: 679 SGGNSTPLPSRAPTSNKCFTCGDPGHRMANCPKK----LQSGRAFLTNEVESGEYDQPPR 512
           S    T     +  + KCF C   GH   +CP +    L     +   E     YD+   
Sbjct: 132 SNDKETTFTRASNVNKKCFKCQGFGHIAFDCPNRRIISLVEEEDYANWEKLEPVYDE--- 188

Query: 511 YDEEILAHLPEEHLHGDVGISLVLRRAYFTPRMD-DDAAQRHHLFQSSCTVNGKVCTFII 335
           YD+E +  +  +H     G +L++RR   T  M  D++  RH++F + CT  GKVC  II
Sbjct: 189 YDDEEIEEVSADH-----GEALIVRRNLNTAMMTKDESWLRHNIFYTRCTSQGKVCNVII 243

Query: 334 DSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQLNFSIVDTYSDSIW 155
           DSGSCENVI+   V KL L T VHP PY L WL++ N V V +R  + FSI + Y D +W
Sbjct: 244 DSGSCENVIANYMVEKLKLQTEVHPHPYKLQWLRKGNEVKVTKRCCVQFSIGNKYEDEVW 303

Query: 154 CDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPSTP 11
           CD++PMDACH+LLGRPWQ+DR   HDG+ NTY+FI  G +++L P  P
Sbjct: 304 CDIIPMDACHLLLGRPWQYDRRAHHDGYKNTYSFIKDGAKIMLTPLKP 351



 Score = 49.3 bits (116), Expect(2) = 2e-52
 Identities = 27/75 (36%), Positives = 43/75 (57%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           Q + +VE Y+ EF  L  + D+ E  +Q V+RY+GGL V   D + L     +++  + A
Sbjct: 27  QKTMTVEEYTMEFEQLHMKCDVHEPEEQTVARYLGGLNVEIADVVQLQPYWNLNDVIRLA 86

Query: 804 ITLEKQFSRNSQLSS 760
           + +EKQ SR   +SS
Sbjct: 87  LKVEKQRSRKRSMSS 101


>ref|XP_007009850.1| Uncharacterized protein TCM_043155 [Theobroma cacao]
           gi|508726763|gb|EOY18660.1| Uncharacterized protein
           TCM_043155 [Theobroma cacao]
          Length = 625

 Score =  179 bits (453), Expect(2) = 6e-50
 Identities = 93/228 (40%), Positives = 130/228 (57%), Gaps = 5/228 (2%)
 Frame = -2

Query: 679 SGGNSTPLPSRAPTSNKCFTCGDPGHRMANCPKK----LQSGRAFLTNEVESGEYDQPPR 512
           S    T     +  + KCF C   GH  ++CP +    L     ++  E     YD+   
Sbjct: 252 SNDKETTFTRASNVNKKCFKCQRFGHIASDCPSRRIISLVEEEDYVNWEKLEPVYDE--- 308

Query: 511 YDEEILAHLPEEHLHGDVGISLVLRRAYFTPRMD-DDAAQRHHLFQSSCTVNGKVCTFII 335
           YD+E +  +  +H     G + ++RR   T  M  D++  RH++F + CT  G VC  II
Sbjct: 309 YDDEEIEEVSADH-----GEAFIVRRNLNTALMTKDESCLRHNIFYTRCTSQGNVCNVII 363

Query: 334 DSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQLNFSIVDTYSDSIW 155
           DSGSCENV++   V KL L T VHP PY L WL++ N V V +R  + F I + Y D +W
Sbjct: 364 DSGSCENVVANYMVEKLKLPTEVHPHPYKLQWLRKGNEVKVTKRCCIQFFIRNKYEDEVW 423

Query: 154 CDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPSTP 11
           CDV+PMDACH+LLGRPWQ+DR   +DG+ NTY+FI  G +++L P  P
Sbjct: 424 CDVIPMDACHLLLGRPWQYDRRAHYDGYKNTYSFIKDGVKIMLTPLKP 471



 Score = 46.6 bits (109), Expect(2) = 6e-50
 Identities = 25/75 (33%), Positives = 42/75 (56%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           Q + +VE Y+ EF  L  + D+ E  +Q ++RY+GGL V   D + L     +++  +  
Sbjct: 147 QKTMTVEEYTMEFEQLHMKCDVHEPEEQTLARYLGGLNVEIADVVQLQPYWNLNDVIRLT 206

Query: 804 ITLEKQFSRNSQLSS 760
           + +EKQ SR   +SS
Sbjct: 207 LKVEKQQSRKRSMSS 221


>ref|XP_006402169.1| hypothetical protein EUTSA_v10015409mg, partial [Eutrema
           salsugineum] gi|557103259|gb|ESQ43622.1| hypothetical
           protein EUTSA_v10015409mg, partial [Eutrema salsugineum]
          Length = 367

 Score =  198 bits (503), Expect = 3e-48
 Identities = 96/221 (43%), Positives = 133/221 (60%)
 Frame = -2

Query: 679 SGGNSTPLPSRAPTSNKCFTCGDPGHRMANCPKKLQSGRAFLTNEVESGEYDQPPRYDEE 500
           SG   T   S  P + +CF CG+PGH    CPK  Q+ R    +E +  + D     ++E
Sbjct: 125 SGTEPTLRRSSQPNALRCFACGEPGHLQTACPK--QTRRGLFGDETKWDKDDAADDNEDE 182

Query: 499 ILAHLPEEHLHGDVGISLVLRRAYFTPRMDDDAAQRHHLFQSSCTVNGKVCTFIIDSGSC 320
             + +PE+H HGD   SL+LR     P + ++   R ++FQS+CT+ GKVC F++DSGSC
Sbjct: 183 FDSEVPEDHHHGDTSPSLMLRHVCLAPVVLEEPWLRTNIFQSTCTIKGKVCRFVVDSGSC 242

Query: 319 ENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQLNFSIVDTYSDSIWCDVVP 140
            NVI+ DA  KL L    HP PY L WLK+   + ++ R  ++FSI   Y D I+CDV  
Sbjct: 243 RNVIAEDAARKLGLKREDHPAPYKLTWLKQGVEIRIEHRCLVSFSIGSHYKDKIYCDVAL 302

Query: 139 MDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPS 17
           MD  H+LLG PWQ+DR V+HDG  N+Y+FIF   ++VL  S
Sbjct: 303 MDVSHLLLGTPWQYDRSVMHDGRRNSYSFIFENRKIVLFSS 343



 Score = 70.1 bits (170), Expect = 1e-09
 Identities = 33/67 (49%), Positives = 48/67 (71%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG+R+++ Y+ EF  LLTR +I ++  QLVSR+I GLR   Q ++  F+P TVSEAH+ A
Sbjct: 11  QGTRTIDEYAEEFSLLLTRTEIYDSEVQLVSRFISGLRPQLQSAMAQFDPDTVSEAHRRA 70

Query: 804 ITLEKQF 784
           +  E+QF
Sbjct: 71  VAFEQQF 77


>gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 572

 Score =  164 bits (416), Expect(2) = 2e-44
 Identities = 93/242 (38%), Positives = 132/242 (54%)
 Frame = -2

Query: 736 RRGSMTNDSMGADRYGPPMSGGNSTPLPSRAPTSNKCFTCGDPGHRMANCPKKLQSGRAF 557
           + G+ ++     +  G  ++  +S+   ++   S KCF C   GH  + CP K    R  
Sbjct: 262 KEGASSSKEATVENKGKTITSSSSSVSTNK---SVKCFKCQGQGHIASQCPTK----RTM 314

Query: 556 LTNEVESGEYDQPPRYDEEILAHLPEEHLHGDVGISLVLRRAYFTPRMDDDAAQRHHLFQ 377
           L  E E    ++   YDEE    +P     GD+   L++RR   +   ++D  QR +LF 
Sbjct: 315 LMEENEGIVEEEDGDYDEEFEEEIPS----GDL---LMVRRMLGSQIKEEDTGQRENLFH 367

Query: 376 SSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQ 197
           + C V GKVC+ IID GSC NV S   VSKL L T  HP PY L WL     + V+++V+
Sbjct: 368 TRCFVQGKVCSLIIDGGSCTNVASTRLVSKLKLETKPHPKPYKLQWLNESVEMLVNKQVE 427

Query: 196 LNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPS 17
           + F I   Y D + CDVVPM+A H+LLGRPWQFDR   HDG+ N Y+F++   ++ L P 
Sbjct: 428 ICFKI-GKYEDVVLCDVVPMEASHLLLGRPWQFDRKANHDGYSNKYSFMYHDQKINLVPL 486

Query: 16  TP 11
            P
Sbjct: 487 NP 488



 Score = 42.4 bits (98), Expect(2) = 2e-44
 Identities = 24/72 (33%), Positives = 37/72 (51%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QGS+SVE Y  E   L  R ++ E  +  ++R++ GL     D + L +   + E    A
Sbjct: 172 QGSKSVEEYFKEMEVLKIRANVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQA 231

Query: 804 ITLEKQFSRNSQ 769
           I +E+Q  R SQ
Sbjct: 232 IKVEQQLKRKSQ 243


>ref|XP_006385239.1| hypothetical protein POPTR_0003s02020g [Populus trichocarpa]
           gi|550342179|gb|ERP63036.1| hypothetical protein
           POPTR_0003s02020g [Populus trichocarpa]
          Length = 567

 Score =  152 bits (383), Expect(2) = 1e-43
 Identities = 91/251 (36%), Positives = 124/251 (49%), Gaps = 12/251 (4%)
 Frame = -2

Query: 736 RRGSMTNDSMGADRYGPPMSGGNSTPLPSRAPTSNKCFTCGDPGHRMANCPKKLQSGRAF 557
           R  S  N+ +  +R   P  G      P    T + C+ C  PGHR  NCPK+ Q+    
Sbjct: 214 RGESSQNNDINQNRNQRPNHG------PYARATGDVCYRCFQPGHRSNNCPKRKQANLVE 267

Query: 556 LTNEVE--SGEYDQPPRYDEEILAH----------LPEEHLHGDVGISLVLRRAYFTPRM 413
            T E +  SG YD    YD    A+          +    +  D  +S+VL+RA  +P+ 
Sbjct: 268 GTEEADDHSGNYDDD--YDGAEFAYEDNNEVVNLMMNRTAIEEDEVLSMVLQRALLSPKQ 325

Query: 412 DDDAAQRHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLK 233
           +    QR+H+F+S C+V+ KVCT I+D GSCEN +S   V  L L T +H  PY L W+K
Sbjct: 326 E---GQRNHIFRSLCSVDNKVCTLIVDGGSCENFVSKKLVDYLKLPTEMHKNPYMLGWVK 382

Query: 232 RDNLVSVDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNF 53
                       +  SI   Y   IWCDV+ MDA H+LLGRPWQFD    H G  N + F
Sbjct: 383 ------------VPLSIGKHYKHEIWCDVIDMDASHVLLGRPWQFDVDATHKGRDNVFIF 430

Query: 52  IFGGTRVVLHP 20
            +   ++ L P
Sbjct: 431 EWVSHKIALAP 441



 Score = 52.4 bits (124), Expect(2) = 1e-43
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QGSR+++ Y+ EF  L+ RN + ET  Q VSRY+ GL    QD + L     + EA   A
Sbjct: 96  QGSRTIKDYTDEFLRLVERNSLNETQGQTVSRYVNGLTTSIQDRIGLQVFWDIHEAQNMA 155

Query: 804 I---TLEKQFSRNSQLSSPSN 751
           +    LEK+     Q     N
Sbjct: 156 MKAQQLEKELKEREQNEKKMN 176


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  160 bits (406), Expect(2) = 3e-43
 Identities = 91/242 (37%), Positives = 132/242 (54%)
 Frame = -2

Query: 736 RRGSMTNDSMGADRYGPPMSGGNSTPLPSRAPTSNKCFTCGDPGHRMANCPKKLQSGRAF 557
           + G+ ++     +  G  ++  +S+   ++   S KCF C   GH  + CP K    R  
Sbjct: 262 KEGASSSKEATVENKGKTITSSSSSVSTNK---SVKCFKCQGQGHIASQCPTK----RTM 314

Query: 556 LTNEVESGEYDQPPRYDEEILAHLPEEHLHGDVGISLVLRRAYFTPRMDDDAAQRHHLFQ 377
           L  E E    ++   YD+E    +P     GD+   L++RR   +   ++D +QR +LF 
Sbjct: 315 LMEENEEIVEEEDGDYDKEFGEEIPS----GDL---LMVRRMLGSQIKEEDTSQRENLFH 367

Query: 376 SSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQ 197
             C V GKVC+ IID GSC NV S   VS+L L T  HP PY L WL     + V+++V+
Sbjct: 368 IRCFVQGKVCSLIIDGGSCTNVASTRLVSRLKLETKPHPKPYKLQWLNESVEMLVNKQVE 427

Query: 196 LNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPS 17
           + F I   Y D + CDVVPM+A H+LLGRPWQFDR   HDG+ N Y+F++   ++ L P 
Sbjct: 428 ICFKI-GKYEDVVLCDVVPMEASHLLLGRPWQFDRKANHDGYSNKYSFMYHDQKINLVPL 486

Query: 16  TP 11
            P
Sbjct: 487 NP 488



 Score = 42.4 bits (98), Expect(2) = 3e-43
 Identities = 24/72 (33%), Positives = 37/72 (51%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QGS+SVE Y  E   L  R ++ E  +  ++R++ GL     D + L +   + E    A
Sbjct: 172 QGSKSVEEYFKEMEVLKIRANVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQA 231

Query: 804 ITLEKQFSRNSQ 769
           I +E+Q  R SQ
Sbjct: 232 IKVEQQLKRKSQ 243


>emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]
          Length = 1431

 Score =  166 bits (419), Expect(2) = 1e-42
 Identities = 97/253 (38%), Positives = 129/253 (50%), Gaps = 24/253 (9%)
 Frame = -2

Query: 697  RYGPPMSGGNST-----PLPSRAPTSN-------KCFTCGDPGHRMANCPKKLQSGRAFL 554
            R  PP SG  S      P PS +  ++       +C  C   GH   +CP K    R  +
Sbjct: 357  RAAPPPSGDKSAIKAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCPSK----RVLV 412

Query: 553  TNEVESGEYDQPPRYDEEILAHL---------PEEHL---HGDVGISLVLRRAYFTPRMD 410
                  GEY     +D++ LA L         PEEH+     D   SL+++R        
Sbjct: 413  VKN--DGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEK 470

Query: 409  DDAAQRHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKR 230
             +  QRH LFQ+ C V  + C  IID GSC N+ S + V KLALST  HP PY++ WL  
Sbjct: 471  AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNN 530

Query: 229  DNLVSVDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFI 50
                 V   V +NF+I   Y D + CDV+PM AC+ILLGRPWQFDR  +H G  N Y+F+
Sbjct: 531  SGKAKVTNLVHINFAI-GNYHDVVECDVLPMQACNILLGRPWQFDRDSMHHGRSNQYSFL 589

Query: 49   FGGTRVVLHPSTP 11
            +   ++VLHP +P
Sbjct: 590  YHDKKIVLHPMSP 602



 Score = 35.4 bits (80), Expect(2) = 1e-42
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG++SVE Y  E    L R ++ ET D  ++R++GGL     D ++  +   ++     A
Sbjct: 250 QGAKSVEEYYQELQMGLLRCNLEETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLA 309

Query: 804 ITLEKQFSRNSQLSSPSNGVGK 739
              E++       +  +   GK
Sbjct: 310 CKAEREVQGRRASAKANFSAGK 331


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  163 bits (413), Expect(2) = 6e-42
 Identities = 94/249 (37%), Positives = 128/249 (51%), Gaps = 23/249 (9%)
 Frame = -2

Query: 688  PPMSGGNSTPLPSRAPTSN-----------KCFTCGDPGHRMANCPKKLQSGRAFLTNEV 542
            PP S  ++T     AP+++           +C  C   GH   +CP K    R  +    
Sbjct: 361  PPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCPSK----RVLVVKN- 415

Query: 541  ESGEYDQPPRYDEEILAHL---------PEEHL---HGDVGISLVLRRAYFTPRMDDDAA 398
              GEY     +D++ LA L         PEEH+     D   SL+++R         +  
Sbjct: 416  -DGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQN 474

Query: 397  QRHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLV 218
            QRH LFQ+ C V  + C  IID GSC N+ S + V KLALST  HP PY++ WL      
Sbjct: 475  QRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKA 534

Query: 217  SVDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGT 38
             V + V +NF+I   Y D + CDVVPM AC+ILLGRPWQFDR  +H G  N Y+F++   
Sbjct: 535  KVTKLVHINFAI-GNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDK 593

Query: 37   RVVLHPSTP 11
            ++VLH  +P
Sbjct: 594  KIVLHSMSP 602



 Score = 35.4 bits (80), Expect(2) = 6e-42
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG++SVE Y  E    L R ++ ET D  ++R++GGL     D ++  +   ++     A
Sbjct: 250 QGAKSVEEYYQELQMGLLRCNLEETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLA 309

Query: 804 ITLEKQFSRNSQLSSPSNGVGK 739
              E++       +  +   GK
Sbjct: 310 CKAEREVQGRRASAKANFSAGK 331


>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|108864301|gb|ABA93040.2|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1748

 Score =  163 bits (412), Expect(2) = 7e-42
 Identities = 94/246 (38%), Positives = 127/246 (51%), Gaps = 23/246 (9%)
 Frame = -2

Query: 688  PPMSGGNSTPLPSRAPTSN-----------KCFTCGDPGHRMANCPKKLQSGRAFLTNEV 542
            PP S  + T     AP+++           +C  C   GH   +CP K    R  +    
Sbjct: 728  PPSSDKSVTKAAQPAPSASSMVSTGRMRDVQCHRCKGFGHVQRDCPSK----RVLVVKN- 782

Query: 541  ESGEYDQPPRYDEEILAHL---------PEEHL---HGDVGISLVLRRAYFTPRMDDDAA 398
              GEY     +D++ LA L         PEEH+     D   SL+++R         +  
Sbjct: 783  -DGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQN 841

Query: 397  QRHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLV 218
            QRH LFQ+ C +  + C  IID GSC N+ S + V KLALST  HP PY++ WL     V
Sbjct: 842  QRHTLFQTKCVLKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKV 901

Query: 217  SVDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGT 38
             V + V +NF+I   Y D + CDVVPM AC+ILLGRPWQFDR  +H G  N Y+F++   
Sbjct: 902  KVTKLVHINFAI-GNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDK 960

Query: 37   RVVLHP 20
            ++VLHP
Sbjct: 961  KIVLHP 966



 Score = 35.4 bits (80), Expect(2) = 7e-42
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG++SVE Y  E    L R ++ ET D  ++R++GGL     D ++  +   ++     A
Sbjct: 617 QGAKSVEEYYQELQMGLLRCNLEETEDTAMARFLGGLNREIYDIVDYKDYTNMTRLFHLA 676

Query: 804 ITLEKQFSRNSQLSSPSNGVGK 739
              E++       +  +   GK
Sbjct: 677 CKAEREVQGRRASAKANFSAGK 698


>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
          Length = 1739

 Score =  163 bits (412), Expect(2) = 7e-42
 Identities = 94/246 (38%), Positives = 127/246 (51%), Gaps = 23/246 (9%)
 Frame = -2

Query: 688  PPMSGGNSTPLPSRAPTSN-----------KCFTCGDPGHRMANCPKKLQSGRAFLTNEV 542
            PP S  + T     AP+++           +C  C   GH   +CP K    R  +    
Sbjct: 719  PPSSDKSVTKAAQPAPSASSMVSTGRMRDVQCHRCKGFGHVQRDCPSK----RVLVVKN- 773

Query: 541  ESGEYDQPPRYDEEILAHL---------PEEHL---HGDVGISLVLRRAYFTPRMDDDAA 398
              GEY     +D++ LA L         PEEH+     D   SL+++R         +  
Sbjct: 774  -DGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQN 832

Query: 397  QRHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLV 218
            QRH LFQ+ C +  + C  IID GSC N+ S + V KLALST  HP PY++ WL     V
Sbjct: 833  QRHTLFQTKCVLKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKV 892

Query: 217  SVDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGT 38
             V + V +NF+I   Y D + CDVVPM AC+ILLGRPWQFDR  +H G  N Y+F++   
Sbjct: 893  KVTKLVHINFAI-GNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDK 951

Query: 37   RVVLHP 20
            ++VLHP
Sbjct: 952  KIVLHP 957



 Score = 35.4 bits (80), Expect(2) = 7e-42
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG++SVE Y  E    L R ++ ET D  ++R++GGL     D ++  +   ++     A
Sbjct: 608 QGAKSVEEYYQELQMGLLRCNLEETEDTAMARFLGGLNREIYDIVDYKDYTNMTRLFHLA 667

Query: 804 ITLEKQFSRNSQLSSPSNGVGK 739
              E++       +  +   GK
Sbjct: 668 CKAEREVQGRRASAKANFSAGK 689


>emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group]
            gi|38345441|emb|CAE03293.2| OSJNBb0046P18.9 [Oryza sativa
            Japonica Group]
          Length = 1134

 Score =  164 bits (414), Expect(2) = 3e-41
 Identities = 95/250 (38%), Positives = 130/250 (52%), Gaps = 24/250 (9%)
 Frame = -2

Query: 697  RYGPPMSGGNST-----PLPSRAPTSN-------KCFTCGDPGHRMANCPKKLQSGRAFL 554
            R  PP+S   S      P PS +  ++       +C  C   GH   +CP K    R  +
Sbjct: 540  RAAPPLSSDKSVTKAAQPAPSASSMASTGRTRDVQCHRCKGFGHVQRDCPSK----RVLV 595

Query: 553  TNEVESGEYDQPPRYDEEILAHL---------PEEHL---HGDVGISLVLRRAYFTPRMD 410
              +   G+Y     +D++ LA L         PEEH+     D   SL+++R   T    
Sbjct: 596  VKK--DGKYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSTQMEK 653

Query: 409  DDAAQRHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKR 230
             +  QRH LFQ+ C V  + C  IID GSC N+ S + V KLALST  HP PY++ WL  
Sbjct: 654  AEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNN 713

Query: 229  DNLVSVDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFI 50
                 V + V +NF+I   Y D + CDVVPM AC+ILLGRPWQFD+  +H G  N Y+F+
Sbjct: 714  SGKAKVTKLVHINFAI-GNYHDVVECDVVPMQACNILLGRPWQFDKDSLHHGRSNQYSFL 772

Query: 49   FGGTRVVLHP 20
            +   ++VLHP
Sbjct: 773  YHDKKIVLHP 782



 Score = 32.7 bits (73), Expect(2) = 3e-41
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG++SVE Y  E    L    + ET D  ++R++GGL     D ++  +   ++     A
Sbjct: 433 QGAKSVEEYYQELQMGLLHCTLEETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLA 492

Query: 804 ITLEKQFSRNSQLSSPSNGVGK 739
              E++       +  +   GK
Sbjct: 493 CKAEREVQGRRASAKANFSAGK 514


>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 1452

 Score =  147 bits (370), Expect(2) = 8e-41
 Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 5/246 (2%)
 Frame = -2

Query: 742 KDRRGSMTNDSMGADRYGPPMSGGNSTPLPSRAPTSN---KCFTCGDPGHRMANCPKKLQ 572
           K  RG+   +     +   P  G NS+   +    SN   +CFTCG+ GH    CP++  
Sbjct: 211 KTNRGATNVEKNDKGKSIMPYGGQNSSGSSTNKRGSNSHIRCFTCGEKGHTSFACPQRK- 269

Query: 571 SGRAFLTNEVESGEYDQPPRYDEEILAHLPEEHLHGDVGISLVLRRAYFTPRMDDDAA-- 398
                  N  E GE +  P YDE     + E  ++   G SLV+RR   T  ++++A   
Sbjct: 270 ------VNLAELGE-ELEPVYDE-YKEEVEEIDVYPAQGESLVVRRI-MTTTVNEEAEDW 320

Query: 397 QRHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLV 218
           +R  +F++     GKVC  +ID GS EN+IS +AV+KL L T  HP PY + WLK+ + V
Sbjct: 321 KRRSIFRTRVVCEGKVCDLVIDGGSMENIISKEAVNKLKLPTNKHPYPYKIGWLKKGHEV 380

Query: 217 SVDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGT 38
            V  +  + F++ D   D   CDVVPMD  HIL+GRPW +D  +VH    NTY+F     
Sbjct: 381 PVTTQCLVKFTMGDNSDDEALCDVVPMDVGHILVGRPWLYDHDMVHKTKPNTYSFYKNNK 440

Query: 37  RVVLHP 20
           R  L+P
Sbjct: 441 RYTLYP 446



 Score = 48.1 bits (113), Expect(2) = 8e-41
 Identities = 22/69 (31%), Positives = 41/69 (59%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           Q + +VE Y++EF +L  R  + E+ +Q+ SRY+ GL    +D + +     + +A Q+A
Sbjct: 106 QNNMTVEEYTSEFNNLSIRVGLAESNEQITSRYLAGLNHSIRDEMGVVRLYNIEDARQYA 165

Query: 804 ITLEKQFSR 778
           ++ EK+  R
Sbjct: 166 LSAEKRVLR 174


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score =  171 bits (432), Expect = 5e-40
 Identities = 92/209 (44%), Positives = 117/209 (55%), Gaps = 2/209 (0%)
 Frame = -2

Query: 631 KCFTCGDPGHRMANCPKKLQSGRAFLTNEVESGEYDQPPRYDEEILA--HLPEEHLHGDV 458
           KC+ C   GH    CP K    RA  + EV     D+    DEE+    H  ++ +  D 
Sbjct: 308 KCYQCQGYGHFAKECPTK----RALSSFEVVHWGDDEILVCDEEVEGTDHEEDDVVMPDA 363

Query: 457 GISLVLRRAYFTPRMDDDAAQRHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLAL 278
           G+SLV  R   T     +  QR  +F+S CT+ G+VC  IID GSC NV S   + KL+L
Sbjct: 364 GLSLVTWRVMHTQPQPLEMDQRQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLIEKLSL 423

Query: 277 STVVHPTPYHLAWLKRDNLVSVDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQF 98
            T  HP+PY L WL +   V VD++  + FSI   YSD   CDV+PMDACH+LLGRPW+F
Sbjct: 424 PTQDHPSPYKLRWLNKGAEVRVDKQCLVTFSIGKNYSDEALCDVLPMDACHLLLGRPWEF 483

Query: 97  DRHVVHDGHFNTYNFIFGGTRVVLHPSTP 11
           DR  VH G  NTY F F   +V+L P  P
Sbjct: 484 DRDSVHHGRDNTYTFKFRSRKVILTPLPP 512


>ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prunus persica]
           gi|462417202|gb|EMJ21939.1| hypothetical protein
           PRUPE_ppa023598mg [Prunus persica]
          Length = 1457

 Score =  136 bits (342), Expect(2) = 1e-39
 Identities = 78/220 (35%), Positives = 109/220 (49%)
 Frame = -2

Query: 670 NSTPLPSRAPTSNKCFTCGDPGHRMANCPKKLQSGRAFLTNEVESGEYDQPPRYDEEILA 491
           N +  P   P ++ C+ C  PGHR   CP+  Q+   F+    E  E D+    D     
Sbjct: 312 NQSQNPYAKPRTDICYRCQKPGHRSNVCPEWTQAN--FIEEVDEDEEKDEVGEDDYAGAE 369

Query: 490 HLPEEHLHGDVGISLVLRRAYFTPRMDDDAAQRHHLFQSSCTVNGKVCTFIIDSGSCENV 311
              EE +     I LVL+R    P+   +  QRH + +S C++  KVC  I+D+GSCEN 
Sbjct: 370 FAIEERMER---IILVLQRVLLAPK---EEGQRHSICRSLCSIKNKVCDVIVDNGSCENF 423

Query: 310 ISVDAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQLNFSIVDTYSDSIWCDVVPMDA 131
           +S   V  L LST  H  PY L W+K+   V V     +  SI   Y D + CDV+ MDA
Sbjct: 424 VSKKLVEHLQLSTEPHVRPYSLGWVKKGPSVRVAETYSVPLSIGKHYIDDVLCDVIDMDA 483

Query: 130 CHILLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPSTP 11
           CHILLG+ WQFD    + G  N   F +   ++ +  + P
Sbjct: 484 CHILLGQLWQFDVDATYKGRDNVILFSWNNRKIAMATTKP 523



 Score = 55.1 bits (131), Expect(2) = 1e-39
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 16/103 (15%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG+RSV  Y+ EF HL  RN + ET +Q V+RY  GL++  Q+ + + N  T+ EA   A
Sbjct: 180 QGNRSVSEYTEEFMHLAERNHLTETDNQKVARYNNGLKISIQEKIGMQNIWTLQEAINMA 239

Query: 804 I---TLEKQ-----FSRNSQ--------LSSPSNGVGKIVVAP 724
           +    LEK+     F RN+          SS S   GK+   P
Sbjct: 240 MKAELLEKEKRQPNFRRNTTEASEYATGASSGSGDKGKVQQQP 282


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  159 bits (403), Expect(2) = 2e-39
 Identities = 95/251 (37%), Positives = 127/251 (50%), Gaps = 23/251 (9%)
 Frame = -2

Query: 685  PMSGGNSTPLPSRAPTSN-------KCFTCGDPGHRMANCPKKLQSGRAFLTNEVESGEY 527
            P  G  +TP  S +  ++       +C  C   GH   +CP    S R  +      G Y
Sbjct: 373  PTRGVAATPSKSSSSVASSGRTRDIQCLRCKGYGHVRKDCP----STRVMIVRA--DGGY 426

Query: 526  DQPPRYDEEILA-------------HLPEEHLHGDVGI---SLVLRRAYFTPRMDDDAAQ 395
                  DEE  A             H  EEH+  +      SLV++R         +  Q
Sbjct: 427  SSASDLDEETYALLATNNAGKGDAPHQDEEHIGAEAAEHYESLVVQRVLSAQMERAEQNQ 486

Query: 394  RHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLVS 215
            RH LFQ+ C +  + C  IID GSC N+ S + V KLALST  HP PY++ WL     V 
Sbjct: 487  RHTLFQTKCVIKERSCRVIIDRGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVK 546

Query: 214  VDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGTR 35
            V R V+++F+I  +Y DSI CDVVPM AC I LGRPWQFD+  +H G  N Y+F+  G +
Sbjct: 547  VTRLVRVHFAI-GSYHDSINCDVVPMQACSIFLGRPWQFDKDSLHFGKSNQYSFVHNGKK 605

Query: 34   VVLHPSTPHVL 2
            +VLHP +P V+
Sbjct: 606  LVLHPMSPEVI 616



 Score = 30.4 bits (67), Expect(2) = 2e-39
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG++SVE Y       + R  + E  D  ++R++GGL    QD L      +++     A
Sbjct: 252 QGNKSVEEYYQALQTGMLRCGLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLA 311

Query: 804 ITLEKQ-------FSRNSQLSSPSNGVGKIVVAP 724
              E++       F  N      S+     V AP
Sbjct: 312 CKAEREVQGRRASFRTNISAGRASSWTSSNVAAP 345


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  155 bits (391), Expect(2) = 3e-39
 Identities = 93/257 (36%), Positives = 127/257 (49%), Gaps = 13/257 (5%)
 Frame = -2

Query: 733  RGSMTNDSMGADRYGPPMSGGNSTPLPSRAPTSNKCFTCGDPGHRMANCPKKLQSGRAFL 554
            R S TN    A +     +G  S+   +       C+ C   GH   +CP +    R  +
Sbjct: 362  RASSTNS---ATKSAQKPAGSASSVASTGRTRDVLCYRCKGYGHVQRDCPNQ----RVLV 414

Query: 553  TNEVESGEYDQPPRYDEEILAHL----------PEEHLHGDVGI---SLVLRRAYFTPRM 413
              +   G Y      DE  LA L          PEE +  D      SL+++R       
Sbjct: 415  VKD--DGGYSSASDLDEATLALLAADDAGTKEPPEEQIGADDAEHYESLIVQRVLSAQME 472

Query: 412  DDDAAQRHHLFQSSCTVNGKVCTFIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLK 233
              +  QRH LFQ+ C +  + C  IID GSC N+ S D V KLAL+T  HP PYH+ WL 
Sbjct: 473  KAEQNQRHTLFQTKCVIKERSCRLIIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQWLN 532

Query: 232  RDNLVSVDRRVQLNFSIVDTYSDSIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNF 53
                V V + V++NF+I  +Y D + CDVVPMDAC+ILLGRPWQFD   +H G  N Y+ 
Sbjct: 533  NSGKVKVTKLVRINFAI-GSYRDVVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQYSL 591

Query: 52   IFGGTRVVLHPSTPHVL 2
            I    +++L P +P  +
Sbjct: 592  IHHDKKIILLPMSPEAI 608



 Score = 34.7 bits (78), Expect(2) = 3e-39
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 984 QGSRSVEAYSTEFYHLLTRNDIRETPDQLVSRYIGGLRVPFQDSLNLFNPQTVSEAHQHA 805
           QG++SVE Y  E    + R +I E  +  ++R++GGL    QD L   +   V+     A
Sbjct: 244 QGTKSVEEYYQELQMGMLRCNIEEGEESAMARFLGGLNREIQDILAYKDYANVTRLFHLA 303

Query: 804 ITLEK--QFSRNSQLSSPSNG 748
              E+  Q  R S  S+ S G
Sbjct: 304 CKAEREVQGRRASARSNVSAG 324


>ref|XP_007028192.1| Uncharacterized protein TCM_023754 [Theobroma cacao]
           gi|508716797|gb|EOY08694.1| Uncharacterized protein
           TCM_023754 [Theobroma cacao]
          Length = 440

 Score =  166 bits (421), Expect = 1e-38
 Identities = 82/171 (47%), Positives = 110/171 (64%), Gaps = 1/171 (0%)
 Frame = -2

Query: 520 PPRYDEEILAHLPEEHLHGDVGISLVLRRAYFTPRMD-DDAAQRHHLFQSSCTVNGKVCT 344
           PP+YD+E +  +  +H     G +L++RR   T  M  D++  RH++F +  T  GKVC 
Sbjct: 121 PPKYDDEEIEEVSADH-----GEALIVRRNLNTAMMTKDESWLRHNIFYTRYTSQGKVCN 175

Query: 343 FIIDSGSCENVISVDAVSKLALSTVVHPTPYHLAWLKRDNLVSVDRRVQLNFSIVDTYSD 164
            IIDSGSCENVI+   V KL L T VHP PY L WL++ N V V +R  + FSI   Y D
Sbjct: 176 VIIDSGSCENVIANYMVEKLKLPTEVHPHPYKLQWLRKGNEVKVTKRCCVQFSIGSKYED 235

Query: 163 SIWCDVVPMDACHILLGRPWQFDRHVVHDGHFNTYNFIFGGTRVVLHPSTP 11
            +WCDV+PMDACH+LLGRPWQ+DR   +DG+ N  +FI  G +++L P  P
Sbjct: 236 EVWCDVIPMDACHLLLGRPWQYDRRAHYDGYKNISSFIKDGVKIMLTPLKP 286