BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00015577
         (752 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26820.3| unnamed protein product [Vitis vinifera]              123   1e-40
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   117   2e-39
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...   113   9e-39
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   115   2e-38
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]   161   2e-37
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   151   2e-34
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   143   7e-32
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   138   2e-30
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       137   3e-30
gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]       137   4e-30
gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana...   135   2e-29
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   135   2e-29
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   134   3e-29
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   130   5e-28
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   130   6e-28
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   130   6e-28
gb|AAT39934.2| RNA-directed RNA polymerase-like, identical [Sola...   130   6e-28
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   129   8e-28
ref|XP_007225416.1| hypothetical protein PRUPE_ppa000562mg [Prun...   100   3e-27
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   126   7e-27

>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  123 bits (309), Expect(2) = 1e-40
 Identities = 64/122 (52%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPR-TYAKVQFTDSRYAK 268
           M KT+ V GFP++ SA+ IK FLE  +G GTIEALE+K  + G   T+AKVQFT    A+
Sbjct: 1   MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 269 MIIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKAT 448
            II LCK  ++Y  +YLKA E D + +P PR     M+ ITL+FGCQ+S++RF VLWKA 
Sbjct: 61  FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120

Query: 449 DV 454
           +V
Sbjct: 121 NV 122



 Score = 70.1 bits (170), Expect(2) = 1e-40
 Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
 Frame = +3

Query: 567 FYKETPEDQWVRTTDFTPSC-IGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFYIES 743
           ++KE P+DQWVR  DFTPSC IGQS  LCL+L Y S  L NF ++F YY   +  F +ES
Sbjct: 154 YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQ-LPNFRENFAYYKENDGKFILES 212

Query: 744 GT 749
           G+
Sbjct: 213 GS 214


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  117 bits (294), Expect(2) = 2e-39
 Identities = 63/115 (54%), Positives = 79/115 (68%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +KSFLE  +G GT+ ALE+K  KRG R +AKVQF D+  A  
Sbjct: 27  MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKRGSRAFAKVQFVDNISADK 86

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVL 436
           II+L    L++  SYLKA+E   + V   R   D M+GITLNFGCQIS+D+F+VL
Sbjct: 87  IINLASKRLYFGSSYLKAWEMKADIV-QLRAYVDHMDGITLNFGCQISDDKFAVL 140



 Score = 72.0 bits (175), Expect(2) = 2e-39
 Identities = 35/64 (54%), Positives = 44/64 (68%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDF PS IG SS LCLQ       L NF++ F +Y+ RE    
Sbjct: 175 SCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYTERENNIT 233

Query: 735 IESG 746
           +++G
Sbjct: 234 LQTG 237


>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score =  113 bits (283), Expect(2) = 9e-39
 Identities = 71/157 (45%), Positives = 91/157 (57%), Gaps = 13/157 (8%)
 Frame = +2

Query: 5   CNLVVKEFHLPSLSLFVF------WLPLDIHFVVK-------MRKTLHVSGFPTLYSAEH 145
           C  V    H+ SL   +F        PL  H  V+       M KT+ V GFP L SAE 
Sbjct: 29  CCPVTYRLHINSLVAHMFDGYEALGCPLLKHLKVELHLEFGYMGKTIQVYGFPRLLSAEV 88

Query: 146 IKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKMIIDLCKSGLFYNGSYLKA 325
           +KSFLE  +G GT+ ALE+K  K G R +AKVQF D+  A  II+L    L++  SYLKA
Sbjct: 89  VKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADKIINLASKRLYFGSSYLKA 148

Query: 326 FEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVL 436
           +E + + V       D M+GITLNFGCQIS+D+F+VL
Sbjct: 149 WELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAVL 184



 Score = 73.9 bits (180), Expect(2) = 9e-39
 Identities = 36/64 (56%), Positives = 45/64 (70%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDFTPS IG SS LCLQ       L NF++ F +Y+ RE    
Sbjct: 219 SCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYAERENNIT 277

Query: 735 IESG 746
           +++G
Sbjct: 278 LQTG 281


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  115 bits (289), Expect(2) = 2e-38
 Identities = 62/115 (53%), Positives = 79/115 (68%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +KSFLE  +G GT+ ALE+K  K G R +AKVQF D+  A  
Sbjct: 1   MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVL 436
           II+L    L++  SYLKA+E   + V + R   D M+GITLNFGCQIS+D+F+VL
Sbjct: 61  IINLASKRLYFGSSYLKAWEMKTDIV-HLRAYVDHMDGITLNFGCQISDDKFAVL 114



 Score = 70.9 bits (172), Expect(2) = 2e-38
 Identities = 35/64 (54%), Positives = 44/64 (68%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDF PS IG SS LCLQ       L NF++ F +Y+ RE    
Sbjct: 149 SCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRR-GVHLPNFQEIFFHYTERENNIT 207

Query: 735 IESG 746
           +++G
Sbjct: 208 LQTG 211


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score =  161 bits (408), Expect = 2e-37
 Identities = 84/140 (60%), Positives = 100/140 (71%), Gaps = 4/140 (2%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           MRKTLHVSGFP L +AE ++ FLE  +  G IEALE+KPGKRG R YAKVQFT    A  
Sbjct: 1   MRKTLHVSGFPKLIAAEEVRKFLEGHTCEGAIEALEVKPGKRGSRAYAKVQFTSKEDADK 60

Query: 272 IIDLCKSGLFY----NGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLW 439
           II L   GL+Y    + SYLKAFEQD NFV N R+   E++G+TLNFGCQ+S+DRFSVLW
Sbjct: 61  IIHLANIGLYYYLGNSRSYLKAFEQDTNFV-NHRSFMHELDGLTLNFGCQVSKDRFSVLW 119

Query: 440 KATDVDVVFGAKLKKMQFLL 499
           +A DV V FG+ L KM   +
Sbjct: 120 RAADVSVKFGSSLNKMHLFV 139



 Score = 92.0 bits (227), Expect = 2e-16
 Identities = 42/66 (63%), Positives = 53/66 (80%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S+YSFY+ETP+DQWVRTTDFTPSCIGQSSGLCLQL      L +F+ +F++Y+V E PF 
Sbjct: 188 SVYSFYRETPDDQWVRTTDFTPSCIGQSSGLCLQLPRHVK-LPDFKNNFMHYTVSEEPFQ 246

Query: 735 IESGTP 752
           + +G P
Sbjct: 247 LVNGAP 252


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  151 bits (382), Expect = 2e-34
 Identities = 78/141 (55%), Positives = 95/141 (67%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M +T+ V GFP L +AE +K FLE  +G GT+ ALE+K  K G R YA+VQFT+ R A+ 
Sbjct: 1   MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVGRRAYARVQFTNIRCAET 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           IIDL K+ L+Y  SYLKA+E D + V NPRT   EM  +TLNFGCQIS  +FSVLWK   
Sbjct: 61  IIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWKGES 120

Query: 452 VDVVFGAKLKKMQFLLSHGEV 514
           V V FG  +KKM F L H  V
Sbjct: 121 VTVKFGTGMKKMHFFLRHNSV 141



 Score = 81.6 bits (200), Expect = 3e-13
 Identities = 39/66 (59%), Positives = 47/66 (71%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S+YS++  T +DQWVRTTDFT S IGQSS LCLQL Y    L NF  +F+YY   ETPF 
Sbjct: 185 SVYSYFMVTQDDQWVRTTDFTQSLIGQSSSLCLQLPY-GMRLPNFRDNFLYYKESETPFR 243

Query: 735 IESGTP 752
           +E+G P
Sbjct: 244 LETGVP 249


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  143 bits (360), Expect = 7e-32
 Identities = 74/140 (52%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPR-TYAKVQFTDSRYAK 268
           M KT+ V GFP++ SA+ IK FLE  +G GTIEALE+K  + G   T+AKVQFT    A+
Sbjct: 1   MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 269 MIIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKAT 448
            II LCK  ++Y  +YLKA E D + +P PR     M+ ITL+FGCQ+S++RF VLWKA 
Sbjct: 61  FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120

Query: 449 DVDVVFGAKLKKMQFLLSHG 508
           +V V FG+ L+K  F LSHG
Sbjct: 121 NVSVKFGSGLRKFYFFLSHG 140



 Score = 70.1 bits (170), Expect = 8e-10
 Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
 Frame = +3

Query: 567 FYKETPEDQWVRTTDFTPSC-IGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFYIES 743
           ++KE P+DQWVR  DFTPSC IGQS  LCL+L Y S  L NF ++F YY   +  F +ES
Sbjct: 190 YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQ-LPNFRENFAYYKENDGKFILES 248

Query: 744 GT 749
           G+
Sbjct: 249 GS 250


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  138 bits (348), Expect = 2e-30
 Identities = 70/138 (50%), Positives = 93/138 (67%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ VS FP+   AE +K+FLE  +G  T+ AL+++  K G R YA VQFT S  A++
Sbjct: 1   MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGRAYAIVQFTKSTDAEL 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           II L    L+Y  SYLKA E +N+ VP PRT    M G+TL+FGCQ+S ++F VLW+  D
Sbjct: 61  IIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEVD 120

Query: 452 VDVVFGAKLKKMQFLLSH 505
           V V FG  ++K+QFLLSH
Sbjct: 121 VTVNFGMGMRKLQFLLSH 138



 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = +3

Query: 558 IYSFYKETPEDQWVRTTDFT-PSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           + +++ + P+DQWVRTTDFT  SCIGQSS LCL+L Y    L NF ++F YY   E  F 
Sbjct: 194 LLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQ-LPNFRENFAYYKESEGKFV 252

Query: 735 IESGT 749
           +ESG+
Sbjct: 253 LESGS 257


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  137 bits (346), Expect = 3e-30
 Identities = 73/138 (52%), Positives = 95/138 (68%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +K FLE  +G GT+ ALE+K  K G R +AKVQF +++ A+ 
Sbjct: 1   MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           IIDL   GL+Y  SYLKA+E   + V  PRT  + M+G+TLNFGCQIS+ +F+VL  + D
Sbjct: 61  IIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVL-GSKD 118

Query: 452 VDVVFGAKLKKMQFLLSH 505
           V + FG  LKK+ F LSH
Sbjct: 119 VSIKFGIGLKKIYFFLSH 136



 Score = 70.9 bits (172), Expect = 5e-10
 Identities = 35/64 (54%), Positives = 42/64 (65%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDFTPS IG SS LCL+       L NF + F YY      F 
Sbjct: 183 SCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRN-GVQLPNFSESFFYYKESMNQFI 241

Query: 735 IESG 746
           +++G
Sbjct: 242 LQTG 245


>gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
          Length = 479

 Score =  137 bits (345), Expect = 4e-30
 Identities = 72/139 (51%), Positives = 98/139 (70%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +K+FLE  +G GT+ ALE+K  K G R++A+VQF  ++ A++
Sbjct: 1   MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRSFARVQFASNKSAEL 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           IIDL   GL+Y  SYLKA+E + + V  PRT    M+G+TLNFGCQIS+ +F+VL  + D
Sbjct: 61  IIDLASMGLYYGPSYLKAWEMNTDIV-QPRTYVQHMDGVTLNFGCQISDKKFAVL-GSKD 118

Query: 452 VDVVFGAKLKKMQFLLSHG 508
           V + FG  LKK+ F LS+G
Sbjct: 119 VSIKFGIGLKKIYFFLSYG 137



 Score = 68.6 bits (166), Expect = 2e-09
 Identities = 34/64 (53%), Positives = 41/64 (64%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDFTPS IG SS LCL+  +    L NF + F YY        
Sbjct: 183 SCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEF-HNGIRLPNFRESFFYYKESGNQVI 241

Query: 735 IESG 746
           + +G
Sbjct: 242 LRTG 245


>gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
          Length = 1044

 Score =  135 bits (340), Expect = 2e-29
 Identities = 71/139 (51%), Positives = 97/139 (69%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +K+FLE  +G GT+ ALE+K  K G R +AKVQF +++ A++
Sbjct: 1   MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEL 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           I+DL   GL+Y  SYL+A+E   + V  PRT    M+G+TLNFGCQIS+ +F+VL  + D
Sbjct: 61  IMDLASEGLYYGPSYLQAWEMKTDIV-QPRTYVQHMDGVTLNFGCQISDKKFAVL-GSKD 118

Query: 452 VDVVFGAKLKKMQFLLSHG 508
           V + FG  LKK+ F LS+G
Sbjct: 119 VSIKFGIGLKKIYFFLSYG 137



 Score = 63.5 bits (153), Expect = 7e-08
 Identities = 32/52 (61%), Positives = 36/52 (69%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYY 710
           S  SF+KETP+DQWVRTTDFTPS IG SS LCL+  +    L NF   F YY
Sbjct: 183 SCNSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEF-HNGVRLPNFSGSFFYY 233


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
           gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
           [Nicotiana glutinosa]
          Length = 1117

 Score =  135 bits (339), Expect = 2e-29
 Identities = 71/139 (51%), Positives = 95/139 (68%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +K+FLE  +G GT+ ALE+K  K G R +AKVQF +++ A++
Sbjct: 1   MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           IIDL   GL+Y  SYLKA+E    ++  PRT    M+G+TLNFGCQIS+ +F+VL     
Sbjct: 61  IIDLASKGLYYGPSYLKAWEM-KTYIVQPRTYVQHMDGVTLNFGCQISDKKFAVLGSKV- 118

Query: 452 VDVVFGAKLKKMQFLLSHG 508
           V + FG  LKK+ F LS+G
Sbjct: 119 VSIKFGIGLKKIYFFLSYG 137



 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 34/64 (53%), Positives = 42/64 (65%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDFTPS IG SS LCL+  +    L NF + F YY        
Sbjct: 183 SCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEF-HNGVRLPNFSESFFYYKESANQVI 241

Query: 735 IESG 746
           +++G
Sbjct: 242 LQTG 245


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  134 bits (337), Expect = 3e-29
 Identities = 76/140 (54%), Positives = 93/140 (66%), Gaps = 1/140 (0%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRG-PRTYAKVQFTDSRYAK 268
           M KT+ V G P+  SA  IK FLE  +G GTIEALE+K  K G   T+AKVQFT  R A+
Sbjct: 1   MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60

Query: 269 MIIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKAT 448
           +II L K  L+Y G+YLKA E D + +P PRT    M+ ITL+FG Q+S +RF VLWKA 
Sbjct: 61  LIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAI 119

Query: 449 DVDVVFGAKLKKMQFLLSHG 508
           +V V FG  L+K  F LSHG
Sbjct: 120 NVSVKFGFGLRKFYFFLSHG 139



 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSC-IGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPF 731
           S  S++KETP+DQWVR  DFTPSC IGQSS LCL+L + S  L NF ++F  Y   +  F
Sbjct: 184 SALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQ-LPNFCENFARYKENDRKF 242

Query: 732 YIESG 746
            +ESG
Sbjct: 243 ILESG 247


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  130 bits (327), Expect = 5e-28
 Identities = 73/139 (52%), Positives = 92/139 (66%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +KSFLE  +G GT+ ALE+K  K G R +AKVQF D+  A  
Sbjct: 1   MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           II+L    L++  SYLKA+E   + V   R   D M+GITLNFGCQIS+D+F+VL  +T+
Sbjct: 61  IINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVL-GSTE 118

Query: 452 VDVVFGAKLKKMQFLLSHG 508
           V + FG  LKK  F LS G
Sbjct: 119 VSIKFGIGLKKFFFFLSSG 137



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 35/64 (54%), Positives = 44/64 (68%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDF PS IG SS LCLQ       L NF++ F +Y+ RE    
Sbjct: 183 SCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYAERENNIT 241

Query: 735 IESG 746
           +++G
Sbjct: 242 LQTG 245


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  130 bits (326), Expect = 6e-28
 Identities = 73/139 (52%), Positives = 92/139 (66%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +KSFLE  +G GT+ ALE+K  K G R +AKVQF D+  A  
Sbjct: 1   MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           II+L    L++  SYLKA+E   + V   R   D M+GITLNFGCQIS+D+F+VL  +T+
Sbjct: 61  IINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVL-GSTE 118

Query: 452 VDVVFGAKLKKMQFLLSHG 508
           V + FG  LKK  F LS G
Sbjct: 119 VSIKFGIGLKKFFFFLSSG 137



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 35/64 (54%), Positives = 44/64 (68%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDF PS IG SS LCLQ       L NF++ F +Y+ RE    
Sbjct: 183 SCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYTERENNIT 241

Query: 735 IESG 746
           +++G
Sbjct: 242 LQTG 245


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  130 bits (326), Expect = 6e-28
 Identities = 74/139 (53%), Positives = 91/139 (65%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +K FLE  +G GTI ALE+K  K G R +AKVQF D+  A  
Sbjct: 1   MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           II+L    L++  SYLKA+E   + V   R   D M+GITLNFGCQISED+F+VL  +T+
Sbjct: 61  IINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVL-GSTE 118

Query: 452 VDVVFGAKLKKMQFLLSHG 508
           V + FG  LKK  F LS G
Sbjct: 119 VSIKFGIGLKKFFFFLSSG 137



 Score = 73.9 bits (180), Expect = 5e-11
 Identities = 36/64 (56%), Positives = 45/64 (70%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDFTPS IG SS LCLQ       L NF++ F +Y+ RE    
Sbjct: 183 SCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYAERENNIT 241

Query: 735 IESG 746
           +++G
Sbjct: 242 LQTG 245


>gb|AAT39934.2| RNA-directed RNA polymerase-like, identical [Solanum demissum]
          Length = 190

 Score =  130 bits (326), Expect = 6e-28
 Identities = 74/139 (53%), Positives = 91/139 (65%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +K FLE  +G GTI ALE+K  K G R +AKVQF D+  A  
Sbjct: 1   MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           II+L    L++  SYLKA+E   + V   R   D M+GITLNFGCQISED+F+VL  +T+
Sbjct: 61  IINLASKRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVL-GSTE 118

Query: 452 VDVVFGAKLKKMQFLLSHG 508
           V + FG  LKK  F LS G
Sbjct: 119 VSIKFGIGLKKFFFFLSSG 137


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
           gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
           [Solanum lycopersicum]
          Length = 1114

 Score =  129 bits (325), Expect = 8e-28
 Identities = 73/139 (52%), Positives = 93/139 (66%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +KSFLE  +G GT+ ALE+K  K G R +AKVQF D+  A  
Sbjct: 1   MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           II L  + L++  SYLKA+E   + V   R   D+M+GITLNFGCQIS+D+F+VL  +T+
Sbjct: 61  IITLANNRLYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVL-GSTE 118

Query: 452 VDVVFGAKLKKMQFLLSHG 508
           V + FG  LKK  F LS G
Sbjct: 119 VSIQFGIGLKKFFFFLSSG 137



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 36/64 (56%), Positives = 44/64 (68%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDF PS IG SS LCLQ       L NFE+ F +Y+ RE    
Sbjct: 183 SCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRR-GVRLPNFEESFFHYAERENNIT 241

Query: 735 IESG 746
           +++G
Sbjct: 242 LQTG 245


>ref|XP_007225416.1| hypothetical protein PRUPE_ppa000562mg [Prunus persica]
           gi|462422352|gb|EMJ26615.1| hypothetical protein
           PRUPE_ppa000562mg [Prunus persica]
          Length = 1095

 Score =  100 bits (250), Expect(2) = 3e-27
 Identities = 60/140 (42%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGP-RTYAKVQFTDSRYAK 268
           M KT+ + GF +  S   +  FLEA +G GT+ A++  P K G  RT A VQFTD+++A 
Sbjct: 1   MVKTIQLYGFSSSESPAAVTEFLEAYTGEGTVHAIKFLPPKDGKSRTLAIVQFTDAKFAG 60

Query: 269 MIIDLCKS-GLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKA 445
           +II L  +  L+YN SYLKA +   + VP     +  M  + L+ GCQISE++FSVLW  
Sbjct: 61  IIIPLADARSLWYNKSYLKARKAKFDMVPKSEIFEHCMELVQLHLGCQISEEQFSVLWAR 120

Query: 446 TDVDVVFGAKLKKMQFLLSH 505
           +DV V FG  LK +    S+
Sbjct: 121 SDVLVKFGVGLKNIYLFFSY 140



 Score = 48.1 bits (113), Expect(2) = 3e-27
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 573 KETPEDQWVRTTDFTPS-CIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFYIESG 746
           ++  ++ WVR  DFTPS CIGQSS +CL+L      L N  K F +Y   E    +ESG
Sbjct: 173 QKASQNGWVREVDFTPSRCIGQSSAVCLELPPTCE-LPNLRKSFAHYKENEGWLVLESG 230


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
           tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
           tuberosum]
          Length = 1115

 Score =  126 bits (317), Expect = 7e-27
 Identities = 72/139 (51%), Positives = 91/139 (65%)
 Frame = +2

Query: 92  MRKTLHVSGFPTLYSAEHIKSFLEARSGLGTIEALEMKPGKRGPRTYAKVQFTDSRYAKM 271
           M KT+ V GFP L SAE +KSFLE  +G GT+ ALE+K  K G R +AKVQF D+  A  
Sbjct: 1   MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 272 IIDLCKSGLFYNGSYLKAFEQDNNFVPNPRTNQDEMNGITLNFGCQISEDRFSVLWKATD 451
           II+L    L++  SYLKA E + + V       D M+GITLNFGCQIS+D+F+VL  +T+
Sbjct: 61  IINLASKRLYFGSSYLKAREMETDLV-QLWEYVDHMDGITLNFGCQISDDKFAVL-GSTE 118

Query: 452 VDVVFGAKLKKMQFLLSHG 508
           V + FG  LKK  F LS G
Sbjct: 119 VSIKFGIGLKKFFFFLSSG 137



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 35/64 (54%), Positives = 44/64 (68%)
 Frame = +3

Query: 555 SIYSFYKETPEDQWVRTTDFTPSCIGQSSGLCLQLDYISNFLKNFEKDFVYYSVRETPFY 734
           S YSF+KETP+DQWVRTTDF PS IG SS LCLQ       L NF++ F +Y+ RE    
Sbjct: 183 SCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRR-GVHLPNFQESFFHYAERENNIT 241

Query: 735 IESG 746
           +++G
Sbjct: 242 LQTG 245