BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00012728
         (1114 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABU62819.1| replicase [Grapevine virus B]                          416   e-114
gb|AFV34758.1| replicase [Grapevine virus B]                          413   e-113
gb|ADE62745.1| replicase [Grapevine virus B]                          412   e-112
gb|AET36885.1| putative replicase, partial [Actinidia virus A]        406   e-111
ref|YP_004935358.1| ORF1 gene product [Actinidia virus B] gi|356...   389   e-105
ref|NP_619654.1| putative replicase [Grapevine virus B] gi|10611...   379   e-102
gb|AFV73358.1| 195 kDa replicase [Grapevine virus A]                  263   8e-68
gb|ACA52189.1| 194 kDa protein [Grapevine virus A]                    263   1e-67
gb|ABL14358.1| 194 kDa protein [Grapevine virus A]                    260   6e-67
gb|ABH06992.2| 194 kDa protein [Grapevine virus A]                    258   3e-66
gb|ABH06983.2| 194 kDa protein [Grapevine virus A]                    258   3e-66
ref|NP_619662.1| putative replicase [Grapevine virus A] gi|81937...   256   1e-65
gb|ABH06988.2| 194 kDa protein [Grapevine virus A]                    255   2e-65
gb|ABH07008.1| putative replicase [Grapevine virus A]                 253   1e-64
gb|ABG37965.1| putative replicase [Grapevine virus A]                 253   1e-64
gb|AAO17778.1| RNA-dependent RNA polymerase [Grapevine virus A]       252   2e-64
gb|AAO84267.1| replicase [Grapevine virus A]                          252   2e-64
gb|ABH06996.2| replication-related protein [Grapevine virus A]        252   2e-64
gb|AGT17853.1| putative replicase [Grapevine virus A]                 249   2e-63
ref|YP_006590065.1| replicase [Grapevine virus F] gi|401620150|g...   241   4e-61

>gb|ABU62819.1| replicase [Grapevine virus B]
          Length = 1709

 Score =  416 bits (1069), Expect = e-114
 Identities = 198/370 (53%), Positives = 261/370 (70%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR+SLSY YNGG H SKGWPEW+  +A  L L ED+DHCL Q+Y+E   I +HADDE 
Sbjct: 612  FYSRHSLSYSYNGGSHTSKGWPEWINEVAKDLGLGEDYDHCLAQMYEENKGINHHADDEL 671

Query: 184  CYTNNAVVTLNLAGEAEFSIKCPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKDRI 363
            CYT+  VVT+NL G A+F +KC  G E    L+ G  L MP+G Q+ HKH+V SLS+ R+
Sbjct: 672  CYTDPEVVTVNLKGTAKFHLKC--GEECSLTLQDGDVLVMPKGFQTTHKHAVTSLSEGRV 729

Query: 364  SLTFRNGILGADQGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITREICM 543
            SLTFRNGI   D+GSD +SEYEE+  E +ESL  L KN K+LC +  +++HM +   IC 
Sbjct: 730  SLTFRNGINAPDEGSDKMSEYEENSPELEESLDALEKNRKSLCALQILADHMRVDLAICT 789

Query: 544  SIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHADNE 723
            S++ +K PRAIEE+K GGM++ T + +LKSL++AAYI++ RGC+   G+++EL C+A+++
Sbjct: 790  SMVFAKDPRAIEEVKRGGMTLGTFICVLKSLNLAAYIESERGCLVVNGSYKELSCYAEDD 849

Query: 724  HLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQKHKG 903
            H+S + GP+   +F NAL  N DI +  Y   E+RAK L+ SF+EGFTGVCLNKFQK K 
Sbjct: 850  HISEWSGPRKETSFSNALSMNPDIRVVKYEVCEQRAKKLVNSFQEGFTGVCLNKFQKQKS 909

Query: 904  SEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNKVHKS 1083
            S +   G     +  +LGFAGSGKS+YPQ +L    Y +TLVIVPRKALC DW NKVH  
Sbjct: 910  SFNLVNGKELIDIHLTLGFAGSGKSFYPQCVLKNSSYSNTLVIVPRKALCSDWINKVHPD 969

Query: 1084 IDVATFESVF 1113
            + V T+E  F
Sbjct: 970  VKVVTYECAF 979


>gb|AFV34758.1| replicase [Grapevine virus B]
          Length = 1709

 Score =  413 bits (1062), Expect = e-113
 Identities = 197/370 (53%), Positives = 260/370 (70%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR+SL Y YNGG H+SKGWPEW+  IA +L L E++DHCL Q+Y+E   I YHADDE 
Sbjct: 612  FYSRHSLGYNYNGGSHSSKGWPEWIDGIAKELGLGEEYDHCLAQVYEENKGINYHADDEP 671

Query: 184  CYTNNAVVTLNLAGEAEFSIKCPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKDRI 363
            CYT+  VVT+NL G A+F +KC    E    L+ G  L MP+G Q+ HKH+V SL++ R+
Sbjct: 672  CYTDPEVVTVNLKGAAKFYLKC--STECSLSLEDGDVLVMPKGFQATHKHAVTSLTEGRV 729

Query: 364  SLTFRNGILGADQGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITREICM 543
            SLTFRNGI   D+GSD +SEYEE+  E +ESL  L KN K+LC +  +++HM +   IC 
Sbjct: 730  SLTFRNGINAPDEGSDKMSEYEENSPELEESLDALEKNRKSLCALQILADHMRVDLAICT 789

Query: 544  SIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHADNE 723
            S++ +K PRAIEE+K GGM++ T + +LKSL++AAYI++ RGC+   G ++EL C+A+++
Sbjct: 790  SMVFAKDPRAIEEVKRGGMTLGTFICVLKSLNLAAYIESERGCLVVNGTYKELSCYAEDD 849

Query: 724  HLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQKHKG 903
            H++ + GP+   +F NAL  N DI I  Y   E+RAK L +SF+EGFTGVCLNKFQK K 
Sbjct: 850  HIAAWTGPRKDTSFSNALSMNPDIRIVKYEVCEQRAKRLASSFQEGFTGVCLNKFQKQKS 909

Query: 904  SEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNKVHKS 1083
            S +   G     +  +LGFAGSGKS+YPQ +L    Y + LVIVPRKALC DW NKVH  
Sbjct: 910  SFNLVNGKELIDVHLTLGFAGSGKSFYPQCVLKNSSYANALVIVPRKALCSDWTNKVHPD 969

Query: 1084 IDVATFESVF 1113
            + V TFES F
Sbjct: 970  VKVVTFESAF 979


>gb|ADE62745.1| replicase [Grapevine virus B]
          Length = 1709

 Score =  412 bits (1058), Expect = e-112
 Identities = 197/370 (53%), Positives = 258/370 (69%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR+SL Y YNGG H SKGWP+WV  +A +L L ED+DHCL Q+Y+E   I YHADDE 
Sbjct: 612  FYSRHSLGYNYNGGSHTSKGWPDWVNKVAMELGLGEDYDHCLAQVYEENKGINYHADDEP 671

Query: 184  CYTNNAVVTLNLAGEAEFSIKCPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKDRI 363
            CYT+  VVT+NL G A F +KC    E    L+ G  L MP+G Q+ HKH+V SL+  R+
Sbjct: 672  CYTDPEVVTVNLKGAANFYLKC--STECSLTLEDGDVLVMPKGFQNTHKHAVTSLTSGRV 729

Query: 364  SLTFRNGILGADQGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITREICM 543
            SLTFRNGI   D+GSD +SEYEE+  E +ESL  L KN K+LC +  +++HM +   IC 
Sbjct: 730  SLTFRNGINEPDEGSDKMSEYEENSPELEESLDALEKNRKSLCALQILADHMRVDLAICT 789

Query: 544  SIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHADNE 723
            S++ +K PRAIEE+K GGM++ T + +LKSL++AAYI++ RGC+   G ++EL C+A+++
Sbjct: 790  SMVFAKDPRAIEEVKRGGMTLGTFICVLKSLNLAAYIESERGCLVVNGTYKELSCYAEDD 849

Query: 724  HLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQKHKG 903
            H+S + GP+   +F NAL  N DI +  Y   E+RAK L +SF+EGFTGVCLNKFQK K 
Sbjct: 850  HISEWSGPRKETSFANALSMNPDIRVVKYEVCEQRAKKLASSFQEGFTGVCLNKFQKQKS 909

Query: 904  SEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNKVHKS 1083
            S +   G+    +  +LGFAGSGKS+YPQ +L    Y + LVIVPRKALC DW NKVH  
Sbjct: 910  SFNLVNGSELIDVHLTLGFAGSGKSFYPQCVLKNSSYSNALVIVPRKALCSDWINKVHPD 969

Query: 1084 IDVATFESVF 1113
            + V TFES F
Sbjct: 970  VKVVTFESAF 979


>gb|AET36885.1| putative replicase, partial [Actinidia virus A]
          Length = 1714

 Score =  406 bits (1044), Expect = e-111
 Identities = 205/370 (55%), Positives = 255/370 (68%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR+S SYEYNGG H S GWPE ++ +A KLNL E +DHCL Q+Y+ G+ IGYHADDE+
Sbjct: 617  FYSRHSASYEYNGGNHQSAGWPEEIEEMAKKLNLDESYDHCLAQVYEAGSGIGYHADDED 676

Query: 184  CYTNNAVVTLNLAGEAEFSIKCPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKDRI 363
            CY + +VVT+NL GEA F  KC N  E  + L AG  L M +G Q  HKHSV S +  R+
Sbjct: 677  CYNDPSVVTVNLKGEAVFKTKCTN--ELTFDLGAGDVLIMHKGFQKTHKHSVVSKTPGRV 734

Query: 364  SLTFRNGILGADQGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITREICM 543
            SLTFRN I  AD  SD LSEYEE    FDE+L+IL KN K+LCC+DRI+EHMG++RE+C 
Sbjct: 735  SLTFRNSIKQADSDSDHLSEYEETESPFDETLEILGKNIKSLCCLDRIAEHMGVSREVCA 794

Query: 544  SIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHADNE 723
            S IH+KMPRA+EE K+GGMS+STLLQ+LK LDVA YI + RG V T G F+E+   A ++
Sbjct: 795  SHIHAKMPRAVEEFKEGGMSISTLLQVLKQLDVAGYICSERGEVRTLGKFKEISLFASDD 854

Query: 724  HLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQKHKG 903
            H+  + G K    FE+A+ FN D+S  H+   +++A  L  SF EGFTG+ LNKF+   G
Sbjct: 855  HIEPFPGEKGDCTFESAMDFNPDVSRVHFVVDQEKANHLSESFREGFTGISLNKFR--GG 912

Query: 904  SEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNKVHKS 1083
                        + T +GFAGSGKSYYPQTLL  G Y  +LVI PRKAL  DW +K+ K 
Sbjct: 913  VPRTTPQKFSREVHTLMGFAGSGKSYYPQTLLKGGAYKSSLVITPRKALASDWESKIAKG 972

Query: 1084 IDVATFESVF 1113
             DVATFE  F
Sbjct: 973  ADVATFEVAF 982


>ref|YP_004935358.1| ORF1 gene product [Actinidia virus B] gi|356711544|gb|AET36890.1|
            putative replicase [Actinidia virus B]
          Length = 1707

 Score =  389 bits (998), Expect = e-105
 Identities = 202/374 (54%), Positives = 246/374 (65%), Gaps = 4/374 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR+S  Y Y GG H ++GWP  ++ + ++L L EDFDHCL QIY++GA I YHADDE 
Sbjct: 609  FYSRHSEEYSYPGGSHKTRGWPAEIERMRNELGLGEDFDHCLCQIYEKGAGIPYHADDET 668

Query: 184  CYTNNAVVTLNLAGEAEFSIKCPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKDRI 363
            CY   +VVT+NL GEA+F  KC N  E  ++L  G  LTM +G QS+HKHSV++    R+
Sbjct: 669  CYKEPSVVTVNLFGEADFKTKCTN--ELSFRLTDGDVLTMGKGFQSNHKHSVQNTGPGRV 726

Query: 364  SLTFRNGILGADQGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITREICM 543
            SLTFRN I+      D LSEYEE    FDE+L +L KN KNLCC+DRI+EHMG+ RE+C 
Sbjct: 727  SLTFRNSIISNQADEDDLSEYEETEAGFDETLVVLEKNVKNLCCLDRIAEHMGVKREVCA 786

Query: 544  SIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHADNE 723
            SIIHSKMPRAIEE K+GGMS+ST + ++K LD+A YIQN RG +   G FREL   A  E
Sbjct: 787  SIIHSKMPRAIEEFKEGGMSISTFIHVVKQLDLACYIQNERGNIQVPGKFRELKVSATGE 846

Query: 724  HLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQKHKG 903
            H+S Y GP        AL FN D+S      ++ RA  L+ SF EGFTGV LNK+QK   
Sbjct: 847  HMSAYLGPTATSTLATALDFNPDVSRLSIEVTQSRAIHLLESFREGFTGVNLNKYQKR-- 904

Query: 904  SEDAPVGTGKER----LFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNK 1071
                P+GT  +     ++   GFAGSGKSYYPQTLL      DTLVIVPRKAL  DW  K
Sbjct: 905  ----PLGTDIDNTLIDVYGLFGFAGSGKSYYPQTLLRCCNMKDTLVIVPRKALKADWSEK 960

Query: 1072 VHKSIDVATFESVF 1113
            V     V TFES F
Sbjct: 961  VKDGAIVRTFESAF 974


>ref|NP_619654.1| putative replicase [Grapevine virus B] gi|1061119|emb|CAA53196.1|
            putative replicase [Grapevine virus B]
          Length = 1707

 Score =  379 bits (972), Expect = e-102
 Identities = 189/370 (51%), Positives = 244/370 (65%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR+S +Y Y G  HASKGWPEWV  IA+KL L EDFDHCL QIY+E   I ++ADDE 
Sbjct: 611  FYSRHSWNYSYTGANHASKGWPEWVSNIAEKLGLGEDFDHCLAQIYEEDKGINFNADDEP 670

Query: 184  CYTNNAVVTLNLAGEAEFSIKCPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKDRI 363
            CYT+  VVT+NL G A F +KC  G+ES+  L  G  L MP+G Q  HKH+V   S  RI
Sbjct: 671  CYTDPEVVTVNLNGNANFHLKC--GSESVVPLSDGDVLIMPKGFQKTHKHAVTGTSAGRI 728

Query: 364  SLTFRNGILGADQGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITREICM 543
            SLTFRNGI   D+GSD +SEYEE             +  K    +  +++HM +   IC 
Sbjct: 729  SLTFRNGINAPDEGSDKMSEYEETH-RIGGKPGCPREEQKESVSLQILADHMRVDLAICT 787

Query: 544  SIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHADNE 723
            S++ +K PRA EE+K GGM++ T + +LKSL++ AYI++ RGC+   G ++EL C+A+++
Sbjct: 788  SMVFAKDPRAREEVKRGGMTLGTFICVLKSLNLGAYIESERGCLYVNGAYKELSCYAEDD 847

Query: 724  HLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQKHKG 903
            H+S + GP+    F NAL  N DI +  Y   E+RAK L+ SF+EGFTGVCLNKFQK K 
Sbjct: 848  HISEWSGPRKETTFSNALSMNPDIRVVKYEVCEQRAKKLVDSFQEGFTGVCLNKFQKQKS 907

Query: 904  SEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNKVHKS 1083
            S +   G     +  +LGFAGSGKS+YPQ +L    Y ++LVIVPRKALC DW NKVH  
Sbjct: 908  SFNLVNGKELIDVHLTLGFAGSGKSFYPQCVLKNSHYANSLVIVPRKALCSDWSNKVHPD 967

Query: 1084 IDVATFESVF 1113
            + V TFES F
Sbjct: 968  VKVVTFESAF 977


>gb|AFV73358.1| 195 kDa replicase [Grapevine virus A]
          Length = 1710

 Score =  263 bits (673), Expect = 8e-68
 Identities = 148/376 (39%), Positives = 211/376 (56%), Gaps = 6/376 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSRNS  Y YNGG H S GW E + A+  +L L E +DHCL+Q Y +   IG+HADDE 
Sbjct: 612  FYSRNSKVYNYNGGSHRSLGWDEALDALVAELGLDESYDHCLIQRYKKEGSIGFHADDEP 671

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY    +VVT+NL GEA F +K   +G      +K G   TM  GMQ  HKH V+SLS  
Sbjct: 672  CYLPGGSVVTVNLNGEAIFEVKENKSGTTEEIHMKDGDVYTMGPGMQQTHKHRVRSLSDG 731

Query: 358  RISLTFRNGILGAD-QGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITRE 534
            R S+T RN  +  + Q  +  S+YEED  + DE ++ L +NS N+C +  I+EHM ++  
Sbjct: 732  RCSITLRNKTVDYEAQRKEETSDYEEDVADVDEGIEYLQRNSANMCSLKAIAEHMQLSIP 791

Query: 535  ICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHA 714
              +SI++ + P+ ++EI+ GG+SV+TL+ + ++L     +   RG   T G++R+L    
Sbjct: 792  TVVSIVNGESPQTLKEIESGGVSVATLVSLSRALGFPIALHGDRGFAQTQGDYRKLHLRV 851

Query: 715  DNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQK 894
             + H+  + G  +      ALL +  +    +   + +A  L  SF  G TGV L K+ K
Sbjct: 852  GDGHVEPFEGVASTGGLREALLLSDGVGQGIFRVDKAKADRLAQSFYSGCTGVLLGKYNK 911

Query: 895  ---HKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWR 1065
               H    + PV      + TS GFAGSGKS++ QT+L +     TL+I PRK L  DW 
Sbjct: 912  GKMHSAELEEPV-----EVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWV 966

Query: 1066 NKVHKSIDVATFESVF 1113
             K+ K   V TFE  F
Sbjct: 967  GKISKKHKVVTFEVAF 982


>gb|ACA52189.1| 194 kDa protein [Grapevine virus A]
          Length = 1707

 Score =  263 bits (672), Expect = 1e-67
 Identities = 150/374 (40%), Positives = 210/374 (56%), Gaps = 4/374 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR+S  Y Y GG H S GW + +  +  +L L E +DHCL+Q Y +G  IG+HADDE 
Sbjct: 609  FYSRHSKEYSYTGGSHRSLGWDKALDELIVELGLDESYDHCLIQRYSKGGSIGFHADDER 668

Query: 184  CYT-NNAVVTLNLAGEAEFSIKCPNGAESLYKLKAGSS--LTMPEGMQSDHKHSVKSLSK 354
            CY    +VVTLNL GEA F +K  N    + K+K G     TM  GMQ  HKH V+S ++
Sbjct: 669  CYLPGGSVVTLNLHGEAIFEVK-ENTTGKIKKIKLGDGDVYTMGPGMQQSHKHRVESCTE 727

Query: 355  DRISLTFRNGILGADQGSD-TLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITR 531
             R S+T RN  +  +   +   SEYEED  E DE ++ L KNS N+C +   ++HM ++ 
Sbjct: 728  GRCSVTLRNKTIDYETRQEGNNSEYEEDVAELDEGIEYLKKNSGNMCSLKAFADHMQLSI 787

Query: 532  EICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCH 711
               +SI++   P+ + EI+ GG+SV+TL+ + K+LD    I   RG   TTG++R+L   
Sbjct: 788  PSVISIVNGVSPQTLREIESGGISVATLVNLSKALDFPVAIHGERGYAETTGDYRKLHLK 847

Query: 712  ADNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQ 891
                H+  + G  +   F+ ALL +  I I  +   + +A  L  SF  G TGV L K+ 
Sbjct: 848  ITAGHVEPFEGVNSRGGFKEALLLSDGIGIGRFRVDKSKADRLAQSFHNGNTGVLLGKY- 906

Query: 892  KHKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNK 1071
             +KG   A      + + T+ GFAGSGKS++ QT+L        LVI PRK L  DW +K
Sbjct: 907  -NKGKIHAEWLDEPKEVLTAFGFAGSGKSHWCQTILKHCAVEKVLVISPRKVLKDDWTSK 965

Query: 1072 VHKSIDVATFESVF 1113
            + K   V TFE  F
Sbjct: 966  ISKEHKVVTFEVAF 979


>gb|ABL14358.1| 194 kDa protein [Grapevine virus A]
          Length = 1707

 Score =  260 bits (665), Expect = 6e-67
 Identities = 151/375 (40%), Positives = 211/375 (56%), Gaps = 5/375 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYS++S  Y YNGG H S GW + +  +  +L L E +DHCL+Q Y +G  IG+HADDE 
Sbjct: 609  FYSKHSKEYSYNGGSHRSLGWDKALDELLAELGLDESYDHCLIQRYTKGGSIGFHADDER 668

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY    +VVTLNL G+A F +K   +G     KL  G   TM  GMQ  HKH V S ++ 
Sbjct: 669  CYLPGGSVVTLNLHGDAIFEVKENVSGKIQEIKLADGDVYTMGPGMQQTHKHRVVSCTEG 728

Query: 358  RISLTFRNGILGAD---QGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGIT 528
            R S+T RN     +   +GS+  SEYEED  E DE ++ L KNS N+C +   ++HM ++
Sbjct: 729  RCSVTLRNKTTDHETRLEGSN--SEYEEDVAELDEGIEYLKKNSGNMCSLKAFADHMQLS 786

Query: 529  REICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVC 708
                +SI++   P+ + EI+ GG+SV+TL+ + K+LD    I   RG   TTG++R+L  
Sbjct: 787  IPSVISIVNGASPQTLREIESGGISVATLVNLSKALDFPVSIHGERGYAETTGDYRKLHL 846

Query: 709  HADNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKF 888
                 H+  + G  +   F+ ALL +  I I  +   + +A  L  SF  G TGV L K+
Sbjct: 847  RITAGHVEPFEGVSSKGGFKEALLLSDGIGIGRFRVDKAKADRLAQSFYNGNTGVLLGKY 906

Query: 889  QKHKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRN 1068
              +KG   A      + + T+ GFAGSGKS++ QT+L        LVI PRK L  DW +
Sbjct: 907  --NKGKMHAEGLEEPKEVLTAFGFAGSGKSHWCQTILKHCTVDKVLVISPRKVLKDDWTS 964

Query: 1069 KVHKSIDVATFESVF 1113
            K+ K   V TFE  F
Sbjct: 965  KISKKHKVVTFEVAF 979


>gb|ABH06992.2| 194 kDa protein [Grapevine virus A]
          Length = 1707

 Score =  258 bits (659), Expect = 3e-66
 Identities = 150/373 (40%), Positives = 204/373 (54%), Gaps = 3/373 (0%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR S  Y Y GG H S GW + +  +  +L L E +DHCL+Q Y +G  IG+HADDE 
Sbjct: 609  FYSRYSKEYSYTGGSHRSLGWDKALDELVAELGLDESYDHCLIQRYSKGGSIGFHADDES 668

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY    +VVTLNL GEA F +K    G     KLK G   TM  GMQ  HKH V S ++ 
Sbjct: 669  CYLPGGSVVTLNLHGEAIFEVKENATGKIEQIKLKDGDVYTMGPGMQQSHKHRVVSCTEG 728

Query: 358  RISLTFRNGILGADQGSD-TLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITRE 534
            R S+T RN     +   +   SEYEED  E DE ++ L KNS N+C +   ++HM ++  
Sbjct: 729  RCSVTLRNKTTDYETRREGNNSEYEEDVAELDEGIEYLQKNSGNMCSLKAFADHMQLSIP 788

Query: 535  ICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHA 714
              +SI++   P+ + EI+ GG+SV+TL+ + K+LD    I   RG   T G++R+L    
Sbjct: 789  SVISIVNGASPQTLREIESGGISVATLVNLSKALDFPVAIHGERGYAETAGDYRKLHLKI 848

Query: 715  DNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQK 894
               H+    G  +   F+ ALL +  I I  +   + +A  L  SF  G TGV L K+  
Sbjct: 849  TAGHVEPLDGVNSKGGFKEALLLSDGIGIGRFRSDKSKADRLAQSFYNGNTGVLLGKY-- 906

Query: 895  HKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNKV 1074
            +KG   A      + + T+ GFAGSGKS++ QT+L        LVI PRK L  DW +K+
Sbjct: 907  NKGKMHAEWLEEPKEVLTAFGFAGSGKSHWCQTILKHCAVEKVLVISPRKVLKDDWTSKI 966

Query: 1075 HKSIDVATFESVF 1113
             K   V TFE  F
Sbjct: 967  SKKHKVVTFEVAF 979


>gb|ABH06983.2| 194 kDa protein [Grapevine virus A]
          Length = 1707

 Score =  258 bits (659), Expect = 3e-66
 Identities = 148/374 (39%), Positives = 207/374 (55%), Gaps = 4/374 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR+S  Y Y  G H S GW + +  +  +L L E +DHCL+Q Y +G  IG+HADDE 
Sbjct: 609  FYSRHSKEYSYTSGSHRSLGWDKALDELIVELGLDESYDHCLIQRYSKGGSIGFHADDER 668

Query: 184  CYT-NNAVVTLNLAGEAEFSIKCPNGAESLYKLKAGSS--LTMPEGMQSDHKHSVKSLSK 354
            CY    +VVTLNL GEA F +K  N    + K+K G     TM  GMQ  HKH V+S ++
Sbjct: 669  CYLPGGSVVTLNLHGEAIFEVK-ENATGKVQKIKLGDGDVYTMGPGMQQTHKHRVESCTE 727

Query: 355  DRISLTFRNGILGADQGSD-TLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITR 531
             R S+T RN     +   +   SEYEED  E DE ++ L KNS N+C +   ++HM ++ 
Sbjct: 728  GRCSVTLRNKTTDYETRQEGNNSEYEEDVAELDEGIEYLKKNSGNMCSLKAFADHMQLSI 787

Query: 532  EICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCH 711
               +SI++   P+ + EI+ GG+SV+TL+ + K+LD    I   RG   T G++R+L   
Sbjct: 788  PSVISIVNGASPQTLREIESGGISVATLVNLSKALDFPVAIHGERGYAETMGDYRKLHLK 847

Query: 712  ADNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQ 891
                H+  + G  +   F+ ALL +  I I  +   + +A  L  SF  G TGV L K+ 
Sbjct: 848  ITAGHVEPFEGVNSRGGFKEALLLSDGIGIGRFRVDKSKADRLAQSFHNGNTGVLLGKY- 906

Query: 892  KHKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNK 1071
             +KG   A      + + T+ GFAGSGKS++ QT+L        LVI PRK L  DW +K
Sbjct: 907  -NKGKIHAEWLDEPKEVLTAFGFAGSGKSHWCQTILKHCAVEKVLVISPRKVLKDDWTSK 965

Query: 1072 VHKSIDVATFESVF 1113
            + K   V TFE  F
Sbjct: 966  ISKKHKVVTFEVAF 979


>ref|NP_619662.1| putative replicase [Grapevine virus A]
            gi|81937291|sp|Q67704.1|RDRP_GVAIS RecName: Full=RNA
            replication protein; Includes: RecName: Full=RNA-directed
            RNA polymerase; Includes: RecName: Full=Helicase
            gi|1405615|emb|CAA53182.1| putative replicase [Grapevine
            virus A]
          Length = 1707

 Score =  256 bits (654), Expect = 1e-65
 Identities = 144/376 (38%), Positives = 204/376 (54%), Gaps = 6/376 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR+S  Y+YNGG H S GW E +  +  +L L + +DHCL+Q Y  G  IG+HADDE 
Sbjct: 609  FYSRHSKEYKYNGGSHRSLGWDEALNELTQELGLDDSYDHCLIQRYTAGGSIGFHADDEP 668

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY    +VVT+NL G+A F +K   +G     +L  G    M  GMQ  HKH V S +  
Sbjct: 669  CYLPGGSVVTVNLHGDATFEVKENQSGKIEKKELHDGDVYVMGPGMQQTHKHRVTSHTDG 728

Query: 358  RISLTFRNGILGAD-QGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITRE 534
            R S+T RN  +  + +  D  SEYEED  E DE +  L KN  N+C +   ++HM ++  
Sbjct: 729  RCSITLRNKTVDYEARKGDEDSEYEEDKAELDEGIDYLQKNQGNMCSLKAFADHMQLSTP 788

Query: 535  ICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHA 714
              ++I++   P+ + EI+DGG S++TL+ + K+LD    I   RG   T G++R L    
Sbjct: 789  SVIAIVNGASPQTLREIEDGGYSLATLVNLSKALDFPIAIHGERGYAETPGSYRRLHLKI 848

Query: 715  DNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQK 894
             + H+  + G  +   F  A+L    + + H+   + +A  L  SF  G TGV L K+ K
Sbjct: 849  TSGHVEPFEGVTSKGGFREAMLLGDGVGVGHFRVDKAKADRLAQSFYNGNTGVLLGKYNK 908

Query: 895  ---HKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWR 1065
               H G  + P     + + T+ GFAGSGKS++ QT+L        LVI PRK L  DW 
Sbjct: 909  GKMHTGEIEEP-----KEVLTAFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLRDDWV 963

Query: 1066 NKVHKSIDVATFESVF 1113
             K+ K   V TFE  F
Sbjct: 964  AKISKKHRVVTFEVAF 979


>gb|ABH06988.2| 194 kDa protein [Grapevine virus A]
          Length = 1707

 Score =  255 bits (652), Expect = 2e-65
 Identities = 148/375 (39%), Positives = 208/375 (55%), Gaps = 5/375 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYS  S  Y Y GG H S GW + +  +  +L L E +DHCL+Q Y +G  IG+HADDE 
Sbjct: 609  FYSGYSKEYSYTGGSHRSLGWDKALDELVAELGLDESYDHCLIQRYSKGGSIGFHADDER 668

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY    +VVTLNL GEA F +K    G     K++ G   TM  GMQ  HKH V S ++ 
Sbjct: 669  CYLPGGSVVTLNLHGEAIFEVKENATGKIQQIKMRDGDVYTMGPGMQQTHKHRVVSCTEG 728

Query: 358  RISLTFRNGILGAD---QGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGIT 528
            R S+T RN     +   +G++  SEYEED  E DE ++ L KNS N+C +   ++HM ++
Sbjct: 729  RCSVTLRNKTTDYETRLEGNN--SEYEEDVAELDEGIEYLQKNSGNMCSLKAFADHMQLS 786

Query: 529  REICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVC 708
                +SI++   P+ + EI+ GG+SV+TL+ + K+LD    I + RG   T G++R+L  
Sbjct: 787  IPSVISIVNGASPQTLREIESGGISVATLVNLSKALDFPVAIHSERGYAETVGDYRKLHL 846

Query: 709  HADNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKF 888
                 H+  + G  +   F+ ALL +  I I  +   + +A  L  SF  G TGV L K+
Sbjct: 847  KITAGHVEPFDGVNSKGGFKEALLLSDGIGIGRFRVDKNKADRLARSFYNGNTGVLLGKY 906

Query: 889  QKHKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRN 1068
              +KG   A      + + T+ GFAGSGKS++ QT+L        LVI PRK L  DW +
Sbjct: 907  --NKGKMHAEWLEEPKEVLTAFGFAGSGKSHWCQTILKHCAVEKVLVISPRKVLKDDWTS 964

Query: 1069 KVHKSIDVATFESVF 1113
            K+ K   V TFE  F
Sbjct: 965  KISKKHKVVTFEVAF 979


>gb|ABH07008.1| putative replicase [Grapevine virus A]
          Length = 1710

 Score =  253 bits (645), Expect = 1e-64
 Identities = 146/373 (39%), Positives = 210/373 (56%), Gaps = 3/373 (0%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR S  Y+Y GG H S GW + + A+  +L L E +DHCL+Q Y +   IG+HADDE 
Sbjct: 612  FYSRYSKDYKYAGGHHRSLGWDDALDALIAELGLDESYDHCLIQRYMKDGAIGFHADDEP 671

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY    +VVT+NL GEA F +K   +G      +K G   TM  GMQ  HKH V+SLS  
Sbjct: 672  CYLPGGSVVTVNLNGEALFEVKENSSGVIKKIHMKDGDVYTMGPGMQQTHKHRVQSLSDG 731

Query: 358  RISLTFRNGILGAD-QGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITRE 534
            R S+T R+  +  + Q  +  SEYEED  + DE ++ L +NS N+C +  I+EHM ++  
Sbjct: 732  RCSITLRDKTVDYEAQRKEGSSEYEEDIADADEGIEYLKRNSANMCSLKAIAEHMQLSIP 791

Query: 535  ICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHA 714
              +SI++ + P+ ++EI+ GG+SV+TL+ + ++L     +  +RG   T G++R+L    
Sbjct: 792  TVVSIVNGESPQTLKEIESGGVSVATLVSLSRTLGFPIALHGNRGFAQTQGDYRKLHLRV 851

Query: 715  DNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQK 894
             + H+  + G  +      ALL +  I    +   + +A  L  SF  G TGV L K+  
Sbjct: 852  GDGHVEPFEGVASSGGLREALLLSDGIGQGIFRVDKVKADRLAQSFYSGCTGVLLGKY-- 909

Query: 895  HKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNKV 1074
            +KG   A        + TS GFAGSGKS++ QT+L +     TLVI PRK L  DW  K+
Sbjct: 910  NKGKMHAAELEEPTEVLTSFGFAGSGKSHWCQTILRSCDVEKTLVISPRKVLKDDWAGKI 969

Query: 1075 HKSIDVATFESVF 1113
             K   V TFE  F
Sbjct: 970  SKKHKVVTFEVAF 982


>gb|ABG37965.1| putative replicase [Grapevine virus A]
          Length = 1710

 Score =  253 bits (645), Expect = 1e-64
 Identities = 145/376 (38%), Positives = 211/376 (56%), Gaps = 6/376 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR S  Y+Y GG H S GW + + ++  +L L E +DHCL+Q Y +   IG+HADDE 
Sbjct: 612  FYSRYSKDYKYAGGHHRSLGWDDALDSLVAELGLDESYDHCLIQRYVKDGAIGFHADDEP 671

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY    +VVT+NL GEA F +K   +GA     +K G   TM  GMQ  HKH V+SLS  
Sbjct: 672  CYLPGGSVVTVNLNGEALFEVKENSSGAIKQIHMKDGDVYTMGPGMQQTHKHRVQSLSDG 731

Query: 358  RISLTFRNGILGAD-QGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITRE 534
            R S+T R+  +  + Q  +  SEYEED  + DE ++ L +NS N+C +  I+EHM ++  
Sbjct: 732  RCSITVRDKTVDYEAQRKEGSSEYEEDVADADEGIEYLKRNSANMCSLKAIAEHMQLSIP 791

Query: 535  ICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHA 714
              +SI++ + P+ ++EI+ GG+SV+TL+ + ++L     +   RG   T G++R+L    
Sbjct: 792  TVVSIVNGESPQTLKEIESGGVSVATLVGLSRTLGFPIALHGDRGFAQTQGDYRKLHLRV 851

Query: 715  DNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQK 894
             + H+  + G  +    + ALL +  +    +   + +A  L  SF  G TGV L K+ K
Sbjct: 852  GDGHVEPFEGVASSGGLKEALLLSDGVGQGIFRVDKAKADRLAQSFYSGCTGVLLGKYNK 911

Query: 895  ---HKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWR 1065
               H    D P       + TS GFAGSGKS++ QT+L +     TL+I PRK L  DW 
Sbjct: 912  GKMHAAELDEPT-----EVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWV 966

Query: 1066 NKVHKSIDVATFESVF 1113
             K+ K   V TFE  F
Sbjct: 967  GKISKKHKVVTFEVAF 982


>gb|AAO17778.1| RNA-dependent RNA polymerase [Grapevine virus A]
          Length = 1707

 Score =  252 bits (644), Expect = 2e-64
 Identities = 145/376 (38%), Positives = 202/376 (53%), Gaps = 6/376 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR S  Y Y GG H S GW + +  +  +L L E +DHCL+Q Y EG  I +HADDE 
Sbjct: 609  FYSRYSKQYSYKGGSHHSLGWDKALDELIQELGLDESYDHCLIQRYSEGGSINFHADDEP 668

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY     VVT+NL GEA F +K   +G     +LK G   TM  GMQ  HKH V SL+  
Sbjct: 669  CYLPGGTVVTVNLNGEAIFELKENTSGKTESKRLKDGDVFTMGAGMQQTHKHKVTSLTNG 728

Query: 358  RISLTFRNGILGADQGSDTL-SEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITRE 534
            R S+T RN  +  +  ++ + S+YEED    DE ++ L KN  N+C +   +EHM ++  
Sbjct: 729  RCSITLRNKTVDYEARTEAINSDYEEDVAALDEGIEYLQKNQGNMCSLKAFAEHMQLSIP 788

Query: 535  ICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHA 714
              +SI++   P+ + EI+ GG+SV+TL+ + ++LD    I   RG   T G +R L    
Sbjct: 789  SVISIVNGASPQTLREIEGGGISVATLVNLSRALDFPIAIHGERGYAETPGTYRRLHLKI 848

Query: 715  DNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQK 894
               H+  + G  +    + ALL +  + I  +   + +A  L  SF  G TGV L K+ K
Sbjct: 849  TTGHVEPFDGVISKGGLKEALLLSDGVGIGLFRVDKNKADRLAQSFYNGNTGVLLGKYNK 908

Query: 895  ---HKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWR 1065
               H    D P     + + T+ GFAGSGKS++ QT+L        LVI PRK L  DW 
Sbjct: 909  GKMHSEGIDEP-----KEVLTAFGFAGSGKSHWCQTILKHCSVEKALVISPRKVLKDDWT 963

Query: 1066 NKVHKSIDVATFESVF 1113
            +K+ K   V TFE  F
Sbjct: 964  SKISKRHKVVTFEVAF 979


>gb|AAO84267.1| replicase [Grapevine virus A]
          Length = 1706

 Score =  252 bits (644), Expect = 2e-64
 Identities = 145/376 (38%), Positives = 202/376 (53%), Gaps = 6/376 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR S  Y Y GG H S GW + +  +  +L L E +DHCL+Q Y EG  I +HADDE 
Sbjct: 608  FYSRYSKQYSYKGGSHHSLGWDKALDELIQELGLDESYDHCLIQRYSEGGSINFHADDEP 667

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY     VVT+NL GEA F +K   +G     +LK G   TM  GMQ  HKH V SL+  
Sbjct: 668  CYLPGGTVVTVNLNGEAIFELKENTSGKTESKRLKDGDVFTMGAGMQQTHKHKVTSLTNG 727

Query: 358  RISLTFRNGILGADQGSDTL-SEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITRE 534
            R S+T RN  +  +  ++ + S+YEED    DE ++ L KN  N+C +   +EHM ++  
Sbjct: 728  RCSITLRNKTVDYEARTEAINSDYEEDVAALDEGIEYLQKNQGNMCSLKAFAEHMQLSIP 787

Query: 535  ICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHA 714
              +SI++   P+ + EI+ GG+SV+TL+ + ++LD    I   RG   T G +R L    
Sbjct: 788  SVISIVNGASPQTLREIEGGGISVATLVNLSRALDFPIAIHGERGYAETPGTYRRLHLKI 847

Query: 715  DNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQK 894
               H+  + G  +    + ALL +  + I  +   + +A  L  SF  G TGV L K+ K
Sbjct: 848  TTGHVEPFDGVISKGGLKEALLLSDGVGIGLFRVDKNKADRLAQSFYNGNTGVLLGKYNK 907

Query: 895  ---HKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWR 1065
               H    D P     + + T+ GFAGSGKS++ QT+L        LVI PRK L  DW 
Sbjct: 908  GKMHSEGIDEP-----KEVLTAFGFAGSGKSHWCQTILKHCSVEKALVISPRKVLKDDWT 962

Query: 1066 NKVHKSIDVATFESVF 1113
            +K+ K   V TFE  F
Sbjct: 963  SKISKRHKVVTFEVAF 978


>gb|ABH06996.2| replication-related protein [Grapevine virus A]
          Length = 1707

 Score =  252 bits (643), Expect = 2e-64
 Identities = 142/374 (37%), Positives = 204/374 (54%), Gaps = 4/374 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYS +S  Y+YNGG H S GW   +  +  +L L + +DHCL+Q Y  G  IG+HADDE 
Sbjct: 609  FYSNHSREYKYNGGAHRSLGWDRALTELRQELGLDDSYDHCLIQRYTAGGSIGFHADDEP 668

Query: 184  CYT-NNAVVTLNLAGEAEFSIKCPNGAESLYK--LKAGSSLTMPEGMQSDHKHSVKSLSK 354
            CY    +VVT+NL G+A F +K  N +E + K  L  G    M    Q  HKH V S + 
Sbjct: 669  CYLPGGSVVTVNLFGDATFEVK-ENKSEKIEKKELHDGDVYVMGPRKQQTHKHRVTSHTD 727

Query: 355  DRISLTFRNGILGAD-QGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITR 531
             R S+T RN  +  + +  D  SEYEED  E DE +  L KN  N+C +   ++HM ++ 
Sbjct: 728  GRCSITLRNKTVDYETRRGDDGSEYEEDKAELDEGIDYLQKNQSNMCSLKAFADHMQLSI 787

Query: 532  EICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCH 711
               +++++   P+ + EI+DGG+S++TL+ + K+LD    I   RG   T+G++R L   
Sbjct: 788  PSVIAVVNGASPQTLREIEDGGISLATLVNLSKALDFPIAIHGERGYAETSGSYRRLHLK 847

Query: 712  ADNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQ 891
              + H+  + G  +   F+ A+L    + + H+   + +A  L  SF  G TGV L K+ 
Sbjct: 848  ITSGHVEPFEGVTSKGGFKEAMLLGDGVGLGHFRVDKAKADRLAQSFYNGNTGVLLGKY- 906

Query: 892  KHKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNK 1071
             +KG   A    G   + TS GFAGSGKS++ QT+L        LVI PRK L  DW  K
Sbjct: 907  -NKGKMHASETEGSMEVLTSFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLKDDWVAK 965

Query: 1072 VHKSIDVATFESVF 1113
            + K   V TFE  F
Sbjct: 966  ISKKHKVVTFEVAF 979


>gb|AGT17853.1| putative replicase [Grapevine virus A]
          Length = 1707

 Score =  249 bits (635), Expect = 2e-63
 Identities = 140/376 (37%), Positives = 204/376 (54%), Gaps = 6/376 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYSR S  Y+YNGG H S GW + +  +  +L L + +DHCL+Q Y  G  IG+HADDE 
Sbjct: 609  FYSRYSKEYKYNGGTHRSLGWDKALNELVQELGLDDSYDHCLIQRYTAGGSIGFHADDEP 668

Query: 184  CYT-NNAVVTLNLAGEAEFSIK-CPNGAESLYKLKAGSSLTMPEGMQSDHKHSVKSLSKD 357
            CY    +VVT+NL G+A F ++   +G     +L  G    M  GMQ  H+H V S +  
Sbjct: 669  CYLPGGSVVTVNLLGDATFEVRENQSGRIEKKELHDGDVYVMGPGMQQTHEHRVTSHTDG 728

Query: 358  RISLTFRNGILGAD-QGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITRE 534
            R S+T RN  +  + +  D  SEYEED  E DE ++ L KN  N+C +   ++HM ++  
Sbjct: 729  RCSITLRNKTIDYESRKGDEGSEYEEDKAELDEGIEYLQKNQGNMCSLKAFADHMQLSIP 788

Query: 535  ICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHA 714
              ++I++   P+ + EI+DGG+S++TL+ + K+LD    I   RG   T G++R L    
Sbjct: 789  SVIAIVNGASPQTLREIEDGGISLATLVNLSKALDFPIAIHGERGYAGTPGSYRRLHLKI 848

Query: 715  DNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQK 894
             + H+  + G  +   F  A+L    + +  +   + +A  L  SF  G TGV L K+ K
Sbjct: 849  TSGHVEPFEGVTSKGGFREAMLLGDGVGLGRFRVDKAKADRLAQSFYNGNTGVLLGKYNK 908

Query: 895  ---HKGSEDAPVGTGKERLFTSLGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWR 1065
               H G  + P     + + T+ GFAGSGKS++ QT+L        LVI PRK L  DW 
Sbjct: 909  GKMHTGEIEEP-----KEVLTAFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLKDDWV 963

Query: 1066 NKVHKSIDVATFESVF 1113
             K+ K   V TFE  F
Sbjct: 964  AKISKKHKVVTFEVAF 979


>ref|YP_006590065.1| replicase [Grapevine virus F] gi|401620150|gb|AFP95341.1| replicase
            [Grapevine virus F]
          Length = 1727

 Score =  241 bits (615), Expect = 4e-61
 Identities = 141/371 (38%), Positives = 207/371 (55%), Gaps = 4/371 (1%)
 Frame = +1

Query: 4    FYSRNSLSYEYNGGKHASKGWPEWVQAIADKLNLKEDFDHCLLQIYDEGAQIGYHADDEE 183
            FYS+ S  Y Y GG H S+G PE +  +   + L E++DHCL+Q Y++   I +HADDE+
Sbjct: 619  FYSKYSTGYTYTGGSHISQGMPESLVELRRSMGLGEEYDHCLVQKYEKDGAIPFHADDEK 678

Query: 184  CY-TNNAVVTLNLAGEAEFSIKCPNGAESLYK--LKAGSSLTMPEGMQSDHKHSVKSLSK 354
            CY   + VVTLN+ G AEF +K  NG E +++  L+ G  L MPEG+Q ++KHSV   S+
Sbjct: 679  CYLPGSCVVTLNMHGTAEFMLK-ENGKEEVHRVTLEDGDVLVMPEGVQENYKHSVLVKSE 737

Query: 355  DRISLTFRNGILGADQGSDTLSEYEEDGVEFDESLQILSKNSKNLCCIDRISEHMGITRE 534
             RISLTFRN  +     SD +S+YEED  + D+ L+ +  N  NLC +  I++H+ +   
Sbjct: 738  GRISLTFRNKTVDY-MNSDAVSDYEEDAPDVDDGLRSIQANRANLCTLQCIADHIKLDLP 796

Query: 535  ICMSIIHSKMPRAIEEIKDGGMSVSTLLQILKSLDVAAYIQNSRGCVSTTGNFRELVCHA 714
            I ++ +++  P  I E+  GG ++ T + +   +D+   I    G + T GNF++L    
Sbjct: 797  ILVARLNATNPEYISELSKGGPTLPTFINLCAKMDIPLQISGVHGGLQTRGNFKKLCVFM 856

Query: 715  DNEHLSHYHGPKNMVNFENALLFNADISICHYNYSEKRAKLLITSFEEGFTGVCLNKFQK 894
              +H+          N  +A   + +     +  + + A+ L  S  EG TG+ LNKF++
Sbjct: 857  GEDHVERVEETVGRNNAYDAFSLHPNSGRGTFYPNREYAEKLSESMFEGHTGILLNKFKR 916

Query: 895  HKGSEDAPVGTGKERLFTS-LGFAGSGKSYYPQTLLGTGQYLDTLVIVPRKALCMDWRNK 1071
             K          KE  F S  GFAGSGKSYYPQT+L     +  LVI PRKAL  DW +K
Sbjct: 917  GK---SVIKDVRKEIKFVSFFGFAGSGKSYYPQTVLQHTFGIRALVISPRKALAADWSSK 973

Query: 1072 VHKSIDVATFE 1104
            +     V TFE
Sbjct: 974  IGSRAKVVTFE 984