BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Mentha25_contig00012103
         (1770 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EYU27933.1| hypothetical protein MIMGU_mgv1a003121mg [Mimulus...   637   e-180
gb|EPS59875.1| hypothetical protein M569_14929 [Genlisea aurea]       587   e-165
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   566   e-159
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   563   e-158
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   546   e-152
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   544   e-152
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   542   e-151
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   541   e-151
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   540   e-150
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   532   e-148
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   531   e-148
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   520   e-145
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   516   e-143
ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein...   516   e-143
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   511   e-142
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   509   e-141
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...   504   e-140
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   503   e-139
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   499   e-138
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....   493   e-136

>gb|EYU27933.1| hypothetical protein MIMGU_mgv1a003121mg [Mimulus guttatus]
          Length = 606

 Score =  637 bits (1642), Expect = e-180
 Identities = 356/576 (61%), Positives = 397/576 (68%), Gaps = 6/576 (1%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLEKLLLEAAGRT                                      Y++RKPS
Sbjct: 1    MADLEKLLLEAAGRTTTSGRNRHSSPPSRRRRKGSYSDDGSDSKNEESDGDRGYTNRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTE 418
             SQVPLKKRLD A                               LYKDEDDREKLSKLTE
Sbjct: 61   GSQVPLKKRLD-ATDRDEDRSSQEGDEDEYDHDRDSDNDSVGSDLYKDEDDREKLSKLTE 119

Query: 419  LEREMILEARATKRSDRDLTEKLKKRKGQDRKG-SPPKAPTRSMRSKAERAGALDELVKR 595
            LEREMILEARATKRSDRDLTEKLKKRKGQDRKG SPPK  TR+MRSKA+RAGALDELVKR
Sbjct: 120  LEREMILEARATKRSDRDLTEKLKKRKGQDRKGSSPPKTHTRNMRSKAQRAGALDELVKR 179

Query: 596  RRESAKGGSGKRYSPVKRRSFAAA-----TLNSPXXXXXXXXXXXXXXXXXXXLADSDDD 760
            RR++AKGGSG RYSPVKRRSFAAA      L+SP                   L DSDDD
Sbjct: 180  RRDAAKGGSGGRYSPVKRRSFAAAAATTTALSSPSRSDSGSHSDDGDSTGDGGLGDSDDD 239

Query: 761  KISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVGIGKSRSGPIYRLCVV 940
            K+S  SKVPTFEDI+EITIRRSKL+KWFMEP+FDELIVGCFVRVGIGKSRSG IYRLCVV
Sbjct: 240  KVS--SKVPTFEDIKEITIRRSKLSKWFMEPFFDELIVGCFVRVGIGKSRSGSIYRLCVV 297

Query: 941  RNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAMISDSPPLKEEFDQWMREVER 1120
            RNVDATDPDR+YK DNKTT K+LNVVWG++SSAARWQMAM+SDS P +EEFDQW++EVER
Sbjct: 298  RNVDATDPDRKYKLDNKTTSKWLNVVWGSESSAARWQMAMVSDSAPQREEFDQWVKEVER 357

Query: 1121 SGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKSATWRPLNVAAEKDRLRRSLE 1300
            +GGH+P+KQEV++K+DAIQ+ NT+VY AATVKQM++EKK                 RSLE
Sbjct: 358  NGGHMPTKQEVMEKRDAIQRTNTFVYSAATVKQMLQEKK-----------------RSLE 400

Query: 1301 VAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEMNRRNRVENFKNASELRPVNA 1480
            VAKEN+D+AEVERIK RL+ELE+SR+ LEK+SKA+KLAEMNR+NRVENFKNASE++PV  
Sbjct: 401  VAKENEDDAEVERIKARLQELESSRQALEKNSKAVKLAEMNRKNRVENFKNASEMKPVTI 460

Query: 1481 GLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXXETLIVKNGGGAVFXXX 1660
            GLKAGEAGYDPFSRRWTRSRNYYV                    E  +  NGGG      
Sbjct: 461  GLKAGEAGYDPFSRRWTRSRNYYV-----------GNSGGGVEAEVAVETNGGGGA-ALP 508

Query: 1661 XXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                            KLVDT APVDQGTES +LHN
Sbjct: 509  GLAATEAALVAAAGAGKLVDTMAPVDQGTESNLLHN 544


>gb|EPS59875.1| hypothetical protein M569_14929 [Genlisea aurea]
          Length = 643

 Score =  587 bits (1514), Expect = e-165
 Identities = 321/572 (56%), Positives = 380/572 (66%), Gaps = 2/572 (0%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLEKLLLEAAGRT                                      YS RKPS
Sbjct: 1    MADLEKLLLEAAGRTTTSERNRPPSRRRRKHSNSDGGSDSRNDDSDGDHH---YSQRKPS 57

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTE 418
            +SQVPLKKR DP                                LYKDE+DREKLSKLTE
Sbjct: 58   SSQVPLKKRFDPTDRDDRSSQDGDEINSNHERDSDNDTIGSD--LYKDEEDREKLSKLTE 115

Query: 419  LEREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSM-RSKAERAGALDELVKR 595
            LEREMILE RATK SDRDLTEKLKKRKG D+K SP KA TRS  RSKAERAGALDELVKR
Sbjct: 116  LEREMILEGRATKISDRDLTEKLKKRKGHDKKLSPAKAHTRSSTRSKAERAGALDELVKR 175

Query: 596  RRESAKGGSGK-RYSPVKRRSFAAATLNSPXXXXXXXXXXXXXXXXXXXLADSDDDKISA 772
            RR++ KGG+ + RYSPVKRRSF AATL+SP                   + DSD+DK  +
Sbjct: 176  RRDAVKGGTTRSRYSPVKRRSFTAATLSSPSHSDSRSQSGEGESTGDGGIGDSDEDKTQS 235

Query: 773  ESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVGIGKSRSGPIYRLCVVRNVD 952
            +S VPTF+DI+EIT++RSKL KWFMEP+FDELI+GCFV+VGIGKSRSG +YRLCVVRNVD
Sbjct: 236  QSNVPTFDDIKEITVQRSKLLKWFMEPFFDELIIGCFVKVGIGKSRSGNVYRLCVVRNVD 295

Query: 953  ATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAMISDSPPLKEEFDQWMREVERSGGH 1132
            ++DP R Y F+N+ THKYL++VWG++SSAARWQM MIS+  P +EEFD W +EVER+GG+
Sbjct: 296  SSDPSRAYDFENRKTHKYLSLVWGSESSAARWQMKMISNEAPKREEFDLWFKEVERTGGN 355

Query: 1133 LPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKSATWRPLNVAAEKDRLRRSLEVAKE 1312
            +P++QEV +K++A+Q+ N +VY AATVKQMV+EKKSAT +P+NVA EKDRLRR++EVA+E
Sbjct: 356  MPTRQEVSEKREALQRINRFVYSAATVKQMVQEKKSATHKPINVALEKDRLRRAMEVARE 415

Query: 1313 NKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEMNRRNRVENFKNASELRPVNAGLKA 1492
            N D  E++ I+ +L ELE+SR+V EKDSKA KLAEMN +NR  NFKNASE++PVN  LKA
Sbjct: 416  NDDHDEMKEIQRKLSELESSRKVPEKDSKAAKLAEMNSKNRKANFKNASEMKPVNTSLKA 475

Query: 1493 GEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXXETLIVKNGGGAVFXXXXXXX 1672
            GE GYDPFSRRWTRSRNYYV                     T                  
Sbjct: 476  GEVGYDPFSRRWTRSRNYYVSNAATGIGEANGSANVASVAATAAALEAAAGA-------- 527

Query: 1673 XXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                        KLVDT APVDQGTES +LH+
Sbjct: 528  -----------GKLVDTNAPVDQGTESNLLHD 548


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
            [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  567 bits (1460), Expect = e-159
 Identities = 315/539 (58%), Positives = 368/539 (68%), Gaps = 22/539 (4%)
 Frame = +2

Query: 218  YSSRKPSASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDRE 397
            YS RK S SQVPLKKRLDP                                LYKD+DDR+
Sbjct: 54   YSGRKLSGSQVPLKKRLDP-QERDDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQ 112

Query: 398  KLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSMRSK------- 556
            KL+++TELEREMIL  RA K+SDR L +K+ K + Q RK S P + +R MRS        
Sbjct: 113  KLAQMTELEREMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRA 172

Query: 557  AERAGALDELVKRR-------------RESAKGGSGKR-YSPVKRRSFAAATL-NSPXXX 691
            A+R  AL+E+  +R             R++A+ GSG R YSP+KRRSF AA+L +SP   
Sbjct: 173  ADRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGSRGYSPIKRRSFTAASLGSSPTRG 232

Query: 692  XXXXXXXXXXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 871
                            + DSDDDK S ES++PTFEDI+EI+IRRSKLAKWFMEP+FDELI
Sbjct: 233  ESDSHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELI 292

Query: 872  VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQ 1051
            VGCFVRVGIG+SRSGPIYRLCVVRNVDA+DP+RQYK +NKTT K+LNVVWGN++SAARWQ
Sbjct: 293  VGCFVRVGIGRSRSGPIYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENSAARWQ 352

Query: 1052 MAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKE 1231
            MAMISDSPPL++EFDQW+REVERSGG +PSKQ+VL+KK+AIQK NT+VY A TVKQM+++
Sbjct: 353  MAMISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQ 412

Query: 1232 KKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKL 1411
            KKSATWRPLNVAAEKDRLRR +EVAK   DEAEVERIK RL+ELE SR+V EKD KA +L
Sbjct: 413  KKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELEDSRKVQEKDDKARRL 472

Query: 1412 AEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXX 1591
            AEMNR+NRVENFKNASELRPVN  LKAGEAGYDPFSRRWTRS NY+              
Sbjct: 473  AEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKGASNGEAAAAAA 532

Query: 1592 XXXXXXXETLIVKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                         +GG A                     KLVDT APVDQGTES  LH+
Sbjct: 533  LAAEDNNGAGGTADGGMAA--------TAAALQAAAGAGKLVDTNAPVDQGTESNTLHD 583


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            tuberosum]
          Length = 652

 Score =  563 bits (1451), Expect = e-158
 Identities = 311/539 (57%), Positives = 367/539 (68%), Gaps = 22/539 (4%)
 Frame = +2

Query: 218  YSSRKPSASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDRE 397
            YS RK S SQVPLKKRLDP                                LYKD+DDR+
Sbjct: 54   YSGRKLSGSQVPLKKRLDP-QERDDDHSSHGEGNDGDGYGNESDDDSIGSDLYKDDDDRQ 112

Query: 398  KLSKLTELEREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSMRSK------- 556
            KL+++TELEREMIL  RA K+SDR L +K+ K + Q RK S P + +R MRS        
Sbjct: 113  KLAQMTELEREMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRA 172

Query: 557  AERAGALDELVKRR-------------RESAKGGSGKR-YSPVKRRSFAAATL-NSPXXX 691
            A+R  AL+E+  +R             R++A+ GSG R YSP+KRRSF AATL +SP   
Sbjct: 173  ADRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGGRGYSPIKRRSFTAATLGSSPTRG 232

Query: 692  XXXXXXXXXXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 871
                            + DSDDDK S ES++PTFEDI+EI+IRRSKLAKWFMEP+FDELI
Sbjct: 233  ESDSHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELI 292

Query: 872  VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQ 1051
            VGCFVRVGIG+SRSGPIYRLCVVRNVD++DP+RQYK +NKTT K+LNVVWGN++SAARWQ
Sbjct: 293  VGCFVRVGIGRSRSGPIYRLCVVRNVDSSDPNRQYKLENKTTSKFLNVVWGNENSAARWQ 352

Query: 1052 MAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKE 1231
            MAM+SDSPPL++EFDQW+REVERSGG +PSKQ+VL+KK+AIQK NT+VY A TVKQM+++
Sbjct: 353  MAMVSDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQ 412

Query: 1232 KKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKL 1411
            KKSATWRPLNVAAEKDRLRR +EVAK   DEAEVERIK RL+EL+ SR+V EKD KA +L
Sbjct: 413  KKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELDDSRKVQEKDDKARRL 472

Query: 1412 AEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXX 1591
            AEMNR+NRVENFKNASELRPVN  LKAG+AGYDPFSRRWTRS NY+              
Sbjct: 473  AEMNRKNRVENFKNASELRPVNQLLKAGQAGYDPFSRRWTRSTNYFA-KGANEEAEGASN 531

Query: 1592 XXXXXXXETLIVKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                         N G +                     KLVDT APVDQGTES  LH+
Sbjct: 532  GEVAAAAALAAEDNNGASGTADGGMAATAAALQAAAGAGKLVDTNAPVDQGTESNTLHD 590


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  546 bits (1407), Expect = e-152
 Identities = 314/598 (52%), Positives = 378/598 (63%), Gaps = 28/598 (4%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LYKDEDDREKLSKL 412
             SQVPLKKRLDP                                  LYKDEDDR KLS++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 413  TELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG-- 571
            TEL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ A  A   
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSR-MRASARSADRS 179

Query: 572  ----ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXXX 703
                AL+EL  +R            RE+++    + +SP KR+ F + +L+S        
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPPKRKPFTSTSLSSSSHSESES 239

Query: 704  XXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVG 877
                          + DSDDD+  A S+ P+F+D++EITIRRSKLAKWFMEP+F+ELIVG
Sbjct: 240  RSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVG 299

Query: 878  CFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMA 1057
            CFVRVGIG+S++GPIYRLC+V+NVDA++PDRQYK +NKTT+KYLNVVWGN+SSAARWQMA
Sbjct: 300  CFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMA 359

Query: 1058 MISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKK 1237
            M+SDS PL+EEF QW++EV+RSGG +PSKQ+VL+KK AIQK  T+VY AATVKQM++EKK
Sbjct: 360  MVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKK 419

Query: 1238 SATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAE 1417
            SA+ RPLNVAAEKDRLRR LE+A+   DEAEVERIKTRL ELEASR+  +KD+KA+KLAE
Sbjct: 420  SASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDAKALKLAE 479

Query: 1418 MNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXXX 1597
            MNR+NR ENFKNASE++PVN GLKAGEAGYDPFSRRWTRSRNYY                
Sbjct: 480  MNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVN 539

Query: 1598 XXXXXETLIVKNGGGA-VFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                       NG GA V                    KLVDT APVDQGTES MLHN
Sbjct: 540  GNVAGAG---SNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHN 594


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  544 bits (1401), Expect = e-152
 Identities = 314/598 (52%), Positives = 379/598 (63%), Gaps = 28/598 (4%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LYKDEDDREKLSKL 412
             SQVPLKKRLDP                                  LYKDEDDR KLS++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 413  TELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG-- 571
            TEL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ A  A   
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSR-MRASARSADRS 179

Query: 572  ----ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXXX 703
                AL+EL  +R            RE+++    + +SP KR++F + +L+S        
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAGPRHFSPPKRKTFTSTSLSSSSHSESES 239

Query: 704  XXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVG 877
                          +ADSDDD+  A S+ P+F+DI+EITIRRSKLAKWFMEP+F+ELIVG
Sbjct: 240  RSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVG 299

Query: 878  CFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMA 1057
            CFVRVGIG+S++GPIYRLC+V+NVDA++PDRQYK +NKTT+KYLNVVWGN+SSAARWQMA
Sbjct: 300  CFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMA 359

Query: 1058 MISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKK 1237
            M+SDS P++EEF QW++EV+ SGG +PSKQ+VL+KK AIQK  T+VY AATVKQM++EKK
Sbjct: 360  MVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKK 419

Query: 1238 SATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAE 1417
            SA+ RPLNVAAEKDRLRR LE+A+   DEAEVERIKTRL+ELEASR+  +KD+KA+KLAE
Sbjct: 420  SASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDAKALKLAE 479

Query: 1418 MNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXXX 1597
            MNR+NR ENFKNASEL+PVN GLKAGEAGYDPFSRRWTRSRNYY                
Sbjct: 480  MNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNIVN 539

Query: 1598 XXXXXETLIVKNGGGA-VFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                       N  GA V                    KLVDT APVDQGTES MLHN
Sbjct: 540  GNVAGAG---SNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHN 594


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  542 bits (1396), Expect = e-151
 Identities = 307/599 (51%), Positives = 375/599 (62%), Gaps = 29/599 (4%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLE LLLEAAGRT                                      YSSRKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLSK 409
             SQVPLKKRLDP                                   LYK+EDDR KL++
Sbjct: 61   GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQ 120

Query: 410  LTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAPTRSMRSKAERAG- 571
            ++ELEREMIL  RA K+ D++LTE+++ ++  +R     K +PP   +R +R+ A  A  
Sbjct: 121  MSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADR 180

Query: 572  ------ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXXX 694
                  AL+EL  RR            R++++ GSG R +SP+KR+ F +A+L+S     
Sbjct: 181  AAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSSES 240

Query: 695  XXXXXXXXXXXXXXX-LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 871
                            +ADSDDD     S+ PTF+DIREITIRRSKLAKWFMEP+F+ELI
Sbjct: 241  ESRSHSEDEGSTGDGGMADSDDDG-EPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELI 299

Query: 872  VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQ 1051
            VGCFVRVGIG+S+SGPIYRLC+VRNVDA DPDR YK +NKTT+KYLNV+WGN+SSAARWQ
Sbjct: 300  VGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQ 359

Query: 1052 MAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKE 1231
            MAMISDS P ++E+ QW+REVERSGG +P+KQ++L+KK+AI+K NT+VY AATVKQM++E
Sbjct: 360  MAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQE 419

Query: 1232 KKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKL 1411
            KKSA+ RPLNVAAEKDRLRR LEVA+  +D+AEVERI+ R++ELEASR+   KD+KAI+L
Sbjct: 420  KKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKDAKAIRL 479

Query: 1412 AEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXX 1591
            AEMNR+NR ENF+NASEL+PVN  LKAGEAGYDPFSRRWTRSRNYYV             
Sbjct: 480  AEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAAAATN 539

Query: 1592 XXXXXXXETLIVKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                              V                    KLVDT APVDQGTES  LHN
Sbjct: 540  NEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHN 598


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
            gi|561032714|gb|ESW31293.1| hypothetical protein
            PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  541 bits (1394), Expect = e-151
 Identities = 309/598 (51%), Positives = 375/598 (62%), Gaps = 28/598 (4%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLSK 409
             SQVPLKKRLDP+                                  LYKDEDDR KLS+
Sbjct: 61   GSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSE 120

Query: 410  LTELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG- 571
            +TEL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ A  A  
Sbjct: 121  MTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSR-MRASARSADR 179

Query: 572  -----ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXX 700
                 AL+EL  +R            RE+++    + +SP KR+ F + +L+S       
Sbjct: 180  SAKNDALNELRAKRLKQQDPEAHRKLREASRNAGPRHFSPPKRKPFTSTSLSSSSHSESE 239

Query: 701  XXXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIV 874
                           + DSDDD+    S+ P+F+DI+EITIRRSKLAKWFMEP+F+ELIV
Sbjct: 240  SRSHSDDEGSTGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIV 299

Query: 875  GCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQM 1054
            GCFVRVGIG+S++GPIYRLC+V+NVDA++PDRQYK +NKTT+KYLNVVWGN+SSAARWQM
Sbjct: 300  GCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQM 359

Query: 1055 AMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEK 1234
            AM+SDS PL+EEF QW++EV+RSGG +P+KQ+VL+KK AIQK  T+VY AATVKQM++EK
Sbjct: 360  AMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQEK 419

Query: 1235 KSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLA 1414
            KSA+ RPLNVAAEKDRLRR LE+A+   DEAEV+RIK RL+ELEASR   +KD+KA+KLA
Sbjct: 420  KSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARLQELEASRHAKQKDAKALKLA 479

Query: 1415 EMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXX 1594
            EMNR+NR ENFKNASEL+PVN GLKAGEAGYDPFSRRWTRSRNYY               
Sbjct: 480  EMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYTGEKAAAGNNSVNGI 539

Query: 1595 XXXXXXETLIVKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                        + G  V                    KLVDT APVDQGTES MLHN
Sbjct: 540  VAGPG-----TNSTGAPVTAEAGLVATAAALEAAADAGKLVDTSAPVDQGTESNMLHN 592


>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  540 bits (1390), Expect = e-150
 Identities = 309/603 (51%), Positives = 376/603 (62%), Gaps = 33/603 (5%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLSK 409
             SQVPLKKRLDPA                                  LYK+EDDR KL++
Sbjct: 61   GSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQ 120

Query: 410  LTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAPTRSMRSKAERAG- 571
            +TELERE+IL  RA KR D+  TEK++ ++  DR     K +PP   +R +RS A  A  
Sbjct: 121  MTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADR 180

Query: 572  ------ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXXX 694
                  AL+EL  +R            R++++G SG R  SPVKR+ F A++L+S     
Sbjct: 181  AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSSSSQSD 240

Query: 695  XXXXXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDEL 868
                             + DSDDD+       PTF+DI+EITIRRSKLAKWFMEP+F+EL
Sbjct: 241  SESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFEEL 300

Query: 869  IVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARW 1048
            IVGC+VRVGIG+S+SGPIYRLC+VRNVDAT+P+R YK +NKTT+KYLNVVWGN+SSAARW
Sbjct: 301  IVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSAARW 360

Query: 1049 QMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVK 1228
            QMAMISDSPP +EEF Q +RE+ERSGG +PSKQ+VL+KK+A+QK  T+VY AATVKQM++
Sbjct: 361  QMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQ 420

Query: 1229 EKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIK 1408
            EKKS + RPLN+AAEKDRLRR LE+A+   DEAEVERIK RL++LEASR+  EKD+KA++
Sbjct: 421  EKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKDAKAVR 480

Query: 1409 LAEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXX 1588
            LAEMNR+NR ENFKNASEL+PVN GLKAGEAGYDPFSRRWTRSRNYYV            
Sbjct: 481  LAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGADAAAVA 540

Query: 1589 XXXXXXXXETLIVKNGGG---AVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYM 1759
                       ++ +G G                         KLVDT APVD+GTES M
Sbjct: 541  NGDRIG-----VIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTESNM 595

Query: 1760 LHN 1768
            LH+
Sbjct: 596  LHD 598


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 658

 Score =  532 bits (1370), Expect = e-148
 Identities = 312/603 (51%), Positives = 376/603 (62%), Gaps = 33/603 (5%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-YSSRKP 235
            MADLE LLLEAAGRT                                       Y SRKP
Sbjct: 1    MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRDDDSDDELNYPSRKP 60

Query: 236  SASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLS 406
            S SQVPLKKRLDP                                   LYKDEDDR KLS
Sbjct: 61   SGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLS 120

Query: 407  KLTELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKAPTRSMRSKAERAG 571
            +++EL+REMIL  RA+K+ D+ L  K+  K+ KG+     K SPP + +R MR+ A  A 
Sbjct: 121  EMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPPLSSSR-MRASARSAD 179

Query: 572  ------ALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXX 697
                  AL+EL  +R            RE+++    +R+SP KR+SF +A L+S      
Sbjct: 180  RSAKNVALNELRAKRLKQQDPEARRRLREASRNSGPRRFSPPKRKSFTSANLSSSSHSDS 239

Query: 698  XXXXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 871
                            +ADSDDD+  + S+ P+F+DI+EITIRRSKLAKWFMEP+F+ELI
Sbjct: 240  DSRSHSDDEGSTGDGGIADSDDDRALSGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELI 299

Query: 872  VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQ 1051
            VGCFVRVGIG+S++GPIYRLC+V+NVD++DPDRQYK +N+TTHKYLNVVWGN+SSAARWQ
Sbjct: 300  VGCFVRVGIGRSKTGPIYRLCMVKNVDSSDPDRQYKLENRTTHKYLNVVWGNESSAARWQ 359

Query: 1052 MAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKE 1231
            MAM+SDS PL+EEF QW++EVERSGG +P+KQ+VL+KK AIQK  T+VY A TVKQM++E
Sbjct: 360  MAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDVLEKKQAIQKIITFVYSADTVKQMLQE 419

Query: 1232 KKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKL 1411
            KKS++ RPLNVAAEKDRLRR +E+A+   DEAEVERIKTR++ELEASR    KD+KA+KL
Sbjct: 420  KKSSSSRPLNVAAEKDRLRREMEIAQSKNDEAEVERIKTRVQELEASRHAKVKDAKALKL 479

Query: 1412 AEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXX 1591
            AEMNR+NR ENFKNASELRPVN GLKAGEAGYDPFSRRWTRSRNYYV             
Sbjct: 480  AEMNRKNRFENFKNASELRPVNIGLKAGEAGYDPFSRRWTRSRNYYV------AKPGEKA 533

Query: 1592 XXXXXXXETLIVKNG----GGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYM 1759
                     L+   G    G  V                    KLVDT APVDQGTES  
Sbjct: 534  AARKNTTNVLVADAGSNITGVPVTAESGVVATAAALEAAADAGKLVDTSAPVDQGTESNF 593

Query: 1760 LHN 1768
            LHN
Sbjct: 594  LHN 596


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  531 bits (1369), Expect = e-148
 Identities = 301/596 (50%), Positives = 370/596 (62%), Gaps = 26/596 (4%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MA+LE LLLEAAGRT                                      Y++RKPS
Sbjct: 1    MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTE 418
             SQVPLKKRLDP                                LYKD+DDR KL+++TE
Sbjct: 61   GSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSESDVGSDLYKDDDDRRKLAEMTE 120

Query: 419  LEREMILEARATKRSDRDLTEKLKKR---KG---QDRKGSP-PKAPTRSMRSKAERAGAL 577
            L+REMIL  RA+K+ D++L EKL+ +   KG   Q RK +P P +  RS    A+RA A 
Sbjct: 121  LQREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKETPLPSSRVRSSARSADRAAAK 180

Query: 578  DELVK----------------RRRESAKGGSGKR-YSPVKRRSFAAATLNSPXXXXXXXX 706
            D+ +                 + R++++GGSG R     KR+S+ A +L+S         
Sbjct: 181  DDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQSDSESE 240

Query: 707  XXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 880
                         + DSDD++    S+  TF+DI+E+T+RRSKLAKW MEP+F+ELIVGC
Sbjct: 241  SQSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEELIVGC 300

Query: 881  FVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAM 1060
            FVRVGIG+S+SGPIYRLC+VRNVDA++PDRQYK DNK THKYLNVVWGN++SAARWQMAM
Sbjct: 301  FVRVGIGRSKSGPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAARWQMAM 360

Query: 1061 ISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKS 1240
            +SDS P +EEF QW+REVERSGG +P+K ++LDKK++I+K NT+VY AATVKQM++EKKS
Sbjct: 361  VSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQMLQEKKS 420

Query: 1241 ATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEM 1420
            A+ RPLN+A EKDRLRR LEVA+   DE EV+RIKTRL+ELEASR+  + D+KAI+LAEM
Sbjct: 421  ASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAKAIRLAEM 480

Query: 1421 NRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXX 1600
            NR+NRVENFKNASEL+PVN GLKAGEAGYDPFSRRWTRSRNYYV                
Sbjct: 481  NRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVKEDSGANAGN 540

Query: 1601 XXXXETLIVKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                         G V                    KLVDT APVDQGT S MLHN
Sbjct: 541  NGASTDAENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVSNMLHN 596


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  520 bits (1340), Expect = e-145
 Identities = 300/592 (50%), Positives = 366/592 (61%), Gaps = 22/592 (3%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LYKDEDDREKLSKL 412
             +QVPLKKRLDP                                  LYKDEDDR KL+++
Sbjct: 61   GTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEM 120

Query: 413  TELEREMILEARATKRSDRDLTEKLKKRKGQDRKGSPPKAPTRSMRSKAERAGALDELV- 589
            +EL+RE+IL  RA K+ D+ L EK + +K        P +  RS    A+RA A D+ + 
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPKK---ETPPLPSSRVRSSARSADRAAAKDDALN 177

Query: 590  ---------------KRRRESAKGGSGKR-YSPVKRRSFAAA--TLNSPXXXXXXXXXXX 715
                           ++ R++++G SG R +S + R+SF A   + +S            
Sbjct: 178  ELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQSDSDSRSHSED 237

Query: 716  XXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGCFVRVG 895
                    + DSDD++    S+  TF+DI+EITIRRSKLAKW MEP+F+ELIVGCFVRVG
Sbjct: 238  DGSTGEDPMMDSDDER----SEGLTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVG 293

Query: 896  IGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAMISDSP 1075
            IG+S+SGPIYRLC+VRNVDA+DPDR+YK +NKTTHKYLNVVWGN++SAARWQMAMISDS 
Sbjct: 294  IGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSA 353

Query: 1076 PLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKSATWRP 1255
            PL+EEF QW+REVERSGG LPSKQ+VL+KK+AI+K NT+VY AATVKQM++EKKSA+ RP
Sbjct: 354  PLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRP 413

Query: 1256 LNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEMNRRNR 1435
            LN+A EKDRLRR LEVA+   D+AEVERIKTRL++LEA R+   KDSKA++LAEMNR+NR
Sbjct: 414  LNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKAVRLAEMNRKNR 473

Query: 1436 VENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXXXXXXE 1615
            VENFKNASEL+PV  GLKAGEAGYDPFSRRWTRSRNYYV                     
Sbjct: 474  VENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAIVDADGALA 533

Query: 1616 TLIVKNGGGAV-FXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
              I  NG   V                     KL+DT APVD GTES ++HN
Sbjct: 534  D-IESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHN 584


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  516 bits (1329), Expect = e-143
 Identities = 297/599 (49%), Positives = 368/599 (61%), Gaps = 29/599 (4%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLSK 409
             SQVPLKKRLDP                                   LYKD+DDR KL+ 
Sbjct: 61   GSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 410  LTELEREMILEARATKRSDRDLTEKLKKR--KGQD---RKGSPP--KAPTRSMRSKAERA 568
            ++EL+REMIL  RA+K++D+ L E L+ +  KG+    RK +PP   +  RS    A+RA
Sbjct: 121  MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 569  GALDELV----------------KRRRESAKGGSG-KRYSPVKRRSFAAATLNSPXXXXX 697
             A D+ +                ++ R++++G +  +R+SP KR+ F A +L+S      
Sbjct: 181  AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSES 240

Query: 698  XXXXXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELI 871
                            + DSDD++    S  PTFEDI+E+TIRRSKLAKW MEP+F+ELI
Sbjct: 241  ESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300

Query: 872  VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQ 1051
            VGCFVRVGIG+SRSGPIYRLC+VRNVDAT+PDRQYK +NK THKYLNV+WGN++SAARWQ
Sbjct: 301  VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360

Query: 1052 MAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKE 1231
            MAM+SDS PL++E+ QW++EVER+GG + SKQ++L+KK+AIQK N +VY AATVKQM+++
Sbjct: 361  MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420

Query: 1232 KKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKL 1411
            KKSA+ RPLN+AAEKDRLRR ++VA    DEAEVERIKTRL++LEASRR+  KD+KAI+L
Sbjct: 421  KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480

Query: 1412 AEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXX 1591
            AEMNR+NRVENFKNASELRP+   LKAGEAGYDPFSRRWTRSRNYYV             
Sbjct: 481  AEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAA 539

Query: 1592 XXXXXXXETLIVKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                     L                             KLVDT APVD GTES  LHN
Sbjct: 540  GNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHN 598


>ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502110282|ref|XP_004493843.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 653

 Score =  516 bits (1328), Expect = e-143
 Identities = 305/601 (50%), Positives = 370/601 (61%), Gaps = 31/601 (5%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLEKLLLEAAGR                                       Y  RKPS
Sbjct: 1    MADLEKLLLEAAGRNIHSLTPSRRKRRGEFLDGGSDSGDDDSDDDGDDHG---YRGRKPS 57

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTE 418
            A+QVPLKKR + +                               LYKDEDDR+KLS++TE
Sbjct: 58   ATQVPLKKRFETSGKDDDVSGDDDGSDREGDSSEDSDVGDD---LYKDEDDRQKLSEMTE 114

Query: 419  LEREMILEARATKRSDRDLTEKL--KKRKGQ----DRKGSPP--------KAPTRSMRSK 556
            L+REMIL  RA+K+ D+D   K+  K+ KG      R+ SPP        +A  RS    
Sbjct: 115  LQREMILSDRASKKDDKDFLGKIASKREKGAKATLSRRESPPPPLLSSRVRASARSADRS 174

Query: 557  AERAGALDELVKRR------------RESAKGGSGKRYSPVKRRSFAAATLNSPXXXXXX 700
            A + GAL+EL  +R            +E +K G G+    +K + FA+  L+S       
Sbjct: 175  AAKDGALNELRAKRLKQLDPEAKLKLKEGSKSG-GRGLFSLKGKPFASTGLSSSSHSDSD 233

Query: 701  XXXXXXXXXXXXX--LADSDDDKISAES--KVPTFEDIREITIRRSKLAKWFMEPYFDEL 868
                           + DSDDD+I   S  +VP+FEDI+EITIRRSKLAKWFMEP+F+EL
Sbjct: 234  SRSRSDDEGSNGDGGIIDSDDDRIMTGSGFEVPSFEDIKEITIRRSKLAKWFMEPFFEEL 293

Query: 869  IVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARW 1048
            IVGCFVRVGIG+S++GPIYRLC+V+NVDA+DPDRQYK DNKTT+KYLNVVWGN++SAARW
Sbjct: 294  IVGCFVRVGIGRSKTGPIYRLCMVKNVDASDPDRQYKLDNKTTYKYLNVVWGNETSAARW 353

Query: 1049 QMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVK 1228
            QMAM+SDSPPL+EEF QW++EVERSGG +  K +V++K  AIQK N++VY AATVKQM++
Sbjct: 354  QMAMVSDSPPLEEEFKQWVKEVERSGGRMLMKLDVMEKNQAIQKINSFVYSAATVKQMIE 413

Query: 1229 EKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIK 1408
            EKKS + RPLNVAAEKDRL+R LE+A+  KD AEVE+IKTRL+ELEASR+   KD+KA++
Sbjct: 414  EKKSNSRRPLNVAAEKDRLKRQLEIAESKKDAAEVEKIKTRLQELEASRKTQAKDAKALR 473

Query: 1409 LAEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXX 1588
            L+EMNR+NR ENFKNASEL+PVN GLKAGEAGYDPFSRRWTRSRNYY             
Sbjct: 474  LSEMNRKNRFENFKNASELKPVNKGLKAGEAGYDPFSRRWTRSRNYYNAKQAEEAAAGNN 533

Query: 1589 XXXXXXXXETLIVKNGGGA-VFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLH 1765
                          NG GA V                    KLVDTRAPVDQGTES  LH
Sbjct: 534  SSGGAVGDRG---SNGVGATVAGEAGVVATAEALEAAADAGKLVDTRAPVDQGTESNFLH 590

Query: 1766 N 1768
            N
Sbjct: 591  N 591


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  511 bits (1317), Expect = e-142
 Identities = 295/601 (49%), Positives = 371/601 (61%), Gaps = 31/601 (5%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-YSSRKP 235
            MADLE LLLEAAGRT                                       Y++RKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKP 60

Query: 236  SASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLS 406
            S SQVPLKKRL+                                    LYKDEDDR+KL+
Sbjct: 61   SGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLA 120

Query: 407  KLTELEREMILEARATKRSDRDLTEKLKKRKGQD-----RKGSPPKAPTRSMRSKAERAG 571
            +++EL+RE+IL  RA K+ D+ LTEK++ ++  D     RK +PP   +R +RS A  A 
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 572  -------ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXX 691
                   AL+EL  +R            R+ ++G +G R +S VK+ +F +A+L+S    
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSSSE 240

Query: 692  XXXXXXXXXXXXXXXX-LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDEL 868
                             +ADSD+D +   SK PT+EDI+EITIRR+KLAKWFMEP+F+EL
Sbjct: 241  SGSRSHSEDEGSTGDGGMADSDED-VEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFEEL 299

Query: 869  IVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARW 1048
            I+GCFVRVGIG+S+SGP+YRLC+VRNVDA +PD+ YK +NK+T+KYLNV WG D+SAARW
Sbjct: 300  IIGCFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAARW 359

Query: 1049 QMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVK 1228
            QMAM+SDS P +EE+ QW+REVE  GG LPSKQ++L+KK+AI+K NT+VY AATVKQM++
Sbjct: 360  QMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQ 419

Query: 1229 EKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIK 1408
            EKKSA+ RPLNVAAEKDRLRR LE+A+   DEAEVERI  R++ELEASR    KD+KAI+
Sbjct: 420  EKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKDAKAIR 479

Query: 1409 LAEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXX 1588
            LAEMNR+NRVENF+NASE++PVN GLKAGEAGYDPFSRRWTRSRNYYV            
Sbjct: 480  LAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADDPVAT 539

Query: 1589 XXXXXXXXETLIVKNGGGA-VFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLH 1765
                      +   N   A V                    KLVDT APVDQGTES  +H
Sbjct: 540  KISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGTESNTMH 599

Query: 1766 N 1768
            +
Sbjct: 600  S 600


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  509 bits (1312), Expect = e-141
 Identities = 294/605 (48%), Positives = 372/605 (61%), Gaps = 35/605 (5%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-YSSRKP 235
            MADLE LLLEAAGRT                                       Y+SRKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 60

Query: 236  SASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LYKDEDDREKLS 406
            S SQVPLKKRL+                                    LYKDEDDR+KL+
Sbjct: 61   SGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLA 120

Query: 407  KLTELEREMILEARATKRSDRDLTEKLKKRKGQD-----RKGSPPKAPTRSMRSKAERAG 571
            +++EL+RE+IL  RA K+ D+ LTEK++ ++  D     RK +PP   +R +RS A  A 
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 572  -------ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXX 691
                   AL+EL  +R            R++++G +G R ++ VK+ +F +A L+S    
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSSSE 240

Query: 692  XXXXXXXXXXXXXXXX---LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFD 862
                               +ADSD+D     S+ PT+EDI+EITIRR+KLAKWFMEP+F+
Sbjct: 241  SESGSRSHSEDEGSTGDGGMADSDEDG-DPGSRGPTYEDIKEITIRRTKLAKWFMEPWFE 299

Query: 863  ELIVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAA 1042
            ELI+GCFVRVGIG+S++GP+YRLC+VRNVDA +PD+ YK +NK+T+KYLNV WG DSSAA
Sbjct: 300  ELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSAA 359

Query: 1043 RWQMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQM 1222
            RWQMAM+SDS P +EE+ QW+RE ER GG LPSKQ++L+KK+AI+K NT+VY AATVKQM
Sbjct: 360  RWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQM 419

Query: 1223 VKEKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKA 1402
            ++EKKSA+ RPLNVAAEKDRLRR LE+A+   DEAEVERI+ R+ ELEASR+   KD+KA
Sbjct: 420  LQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKDAKA 479

Query: 1403 IKLAEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXX 1582
            ++LAEMNR+NRVENF+NASEL+P+N GLKAGEAGYDPFSRRWTRSRNYYV          
Sbjct: 480  LRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYV--SNPAGGDD 537

Query: 1583 XXXXXXXXXXETLIVKNGGGAV---FXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTES 1753
                      +T  V +    V                       KLVDT APVDQGTES
Sbjct: 538  AVAASNSEANDTAAVADSDHVVAGAMSESGVAATAAALDAAADAGKLVDTSAPVDQGTES 597

Query: 1754 YMLHN 1768
              +HN
Sbjct: 598  NTMHN 602


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
            gi|557524836|gb|ESR36142.1| hypothetical protein
            CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  504 bits (1298), Expect = e-140
 Identities = 295/596 (49%), Positives = 361/596 (60%), Gaps = 26/596 (4%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLE LLLEAAGRT                                      Y SRKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDNRG--YGSRKPS 58

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTE 418
             SQVPLKKRLDPA                                  +E D +   ++TE
Sbjct: 59   GSQVPLKKRLDPAERDDDQGSQEEGDYDGGASEHEGDS--------SNESDDDNHGQMTE 110

Query: 419  LEREMILEARATKRSDRDLTEKLKKRKGQ----DRKGSPPKAPTRSMR---SKAERAGAL 577
            LEREM++  R  K+ D++L +K + R+ +      K +PP   +RS R     A+RA A 
Sbjct: 111  LEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRAAAK 170

Query: 578  DELV----------------KRRRESAKGGSGKRY-SPVKRRSFAAATLNSPXXXXXXXX 706
            D+ +                +R R++++GGSG R  SPVKR++F  A L+S         
Sbjct: 171  DDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSESESR 230

Query: 707  XXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 880
                         +ADSDDD      + PT++DI+EITIRRSKLAKWFMEP+F+ELIVGC
Sbjct: 231  SHSDDEGSTGDGGMADSDDDGAPGSGR-PTYDDIKEITIRRSKLAKWFMEPFFEELIVGC 289

Query: 881  FVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAM 1060
            FVRVGIG+S++GPIYRLC+VRNVDAT+PDR YK +N+TT KYLNV WGN+SSAARWQMAM
Sbjct: 290  FVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAM 349

Query: 1061 ISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKS 1240
            +SDSPPL+EEF QW+REVER+GG +PSKQ+VL+KK++IQK NT+VY AATVKQM++EKKS
Sbjct: 350  VSDSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKS 409

Query: 1241 ATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEM 1420
            A+ RPLNVAAEKDRLRR LEVA+   D+ ++ERIK RL+ELEASR    KD+KAI+LAEM
Sbjct: 410  ASSRPLNVAAEKDRLRRELEVAQSRHDDVDMERIKKRLQELEASRDSKVKDAKAIRLAEM 469

Query: 1421 NRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXX 1600
            NR+NRVENFKNASEL+ VN  LKAGEAGYDPFSRRWTRSRNYY+                
Sbjct: 470  NRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTAEANGDKN 529

Query: 1601 XXXXETLIVKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                      NG                        KLVDT AP+D GTES MLH+
Sbjct: 530  GVPGGA----NGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHD 581


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Citrus sinensis]
          Length = 643

 Score =  503 bits (1295), Expect = e-139
 Identities = 295/596 (49%), Positives = 359/596 (60%), Gaps = 26/596 (4%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADLE LLLEAAGRT                                      Y SRKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDNRG--YGSRKPS 58

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKDEDDREKLSKLTE 418
             SQVPLKKRLDP                                   +E D +   ++TE
Sbjct: 59   GSQVPLKKRLDPTERDDDQGSQEEGDYDGGASEHEGDS--------SNESDDDNHGQMTE 110

Query: 419  LEREMILEARATKRSDRDLTEKLKKRKGQ----DRKGSPPKAPTRSMR---SKAERAGAL 577
            LEREM++  R  K+ D++L +K + R+ +      K +PP   +RS R     A+RA A 
Sbjct: 111  LEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRAAAK 170

Query: 578  DELV----------------KRRRESAKGGSGKRY-SPVKRRSFAAATLNSPXXXXXXXX 706
            D+ +                +R R++++GGSG R  SPVKR++F  A L+S         
Sbjct: 171  DDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSESESR 230

Query: 707  XXXXXXXXXXX--LADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 880
                         +ADSDDD      + PT++DI+EITIRRSKLAKWFMEP+F+ELIVGC
Sbjct: 231  SHSDDEGSTGDGGMADSDDDGAPGSGR-PTYDDIKEITIRRSKLAKWFMEPFFEELIVGC 289

Query: 881  FVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAM 1060
            FVRVGIG+S++GPIYRLC+VRNVDAT+PDR YK +N+TT KYLNV WGN+SSAARWQMAM
Sbjct: 290  FVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAM 349

Query: 1061 ISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKS 1240
            +SDSPPL+EEF QW+REVER+ G +PSKQ+VL+KKD+IQK NT+VY AATVKQM++EKKS
Sbjct: 350  VSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQMLQEKKS 409

Query: 1241 ATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEM 1420
            A+ RPLNVAAEKDRLRR LEVA+   DE ++ERIK RL+ELEASR    KD+KAI+LAEM
Sbjct: 410  ASSRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKRLQELEASRDSKVKDAKAIRLAEM 469

Query: 1421 NRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXX 1600
            NR+NRVENFKNASEL+ VN  LKAGEAGYDPFSRRWTRSRNYY+                
Sbjct: 470  NRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTAEANGDKN 529

Query: 1601 XXXXETLIVKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                      NG                        KLVDT AP+D GTES MLH+
Sbjct: 530  GVPGGA----NGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHD 581


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 657

 Score =  499 bits (1284), Expect = e-138
 Identities = 291/607 (47%), Positives = 364/607 (59%), Gaps = 37/607 (6%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            MADL+ LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MADLDDLLLEAAGRTSSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LYKDEDDREKLSKL 412
             SQVPLKKRLDP+                                 LYKDE+DR KL+++
Sbjct: 61   GSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLAEM 120

Query: 413  TELEREMILEARATKRSDRDLTEKLKKR--KG---QDRKGSPP--KAPTRSMRSKAERAG 571
            +EL+RE+IL  RA K+ D+ L EK + +  KG   Q RK +PP   +  RS    A+RA 
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSARSADRAA 180

Query: 572  ALDELV----------------KRRRESAKGGSG-KRYSPVKRRSFAAATLNSPXXXXXX 700
            A D+ +                ++ R+ ++G  G K +S   ++SF+A   +S       
Sbjct: 181  AKDDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKNFSHTIKKSFSAVRRSSSSQSDSE 240

Query: 701  XXXXXXXXXXXXXLADSDDDKISAESKVP----------TFEDIREITIRRSKLAKWFME 850
                          + SDDD  SA+  +           TFEDI+EITIRRS+LAKW ME
Sbjct: 241  SR------------SHSDDDGSSADDAIDSDDERGNQGLTFEDIKEITIRRSRLAKWLME 288

Query: 851  PYFDELIVGCFVRVGIGKSRSG-PIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGN 1027
            P+F+ELIVGC VRVGIGK++SG PIYRLC V NVD++DPDRQYK +NKTTHKYLNVVWGN
Sbjct: 289  PFFEELIVGCCVRVGIGKTKSGRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGN 348

Query: 1028 DSSAARWQMAMISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAA 1207
            ++SAARWQMAM+SDS PL+EE+DQW+REVE++GG LPSK++VL+KK+AI+K NT+VY A 
Sbjct: 349  ENSAARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAK 408

Query: 1208 TVKQMVKEKKSATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLE 1387
            TVKQM++EKKSA+ RPLN+A EKDRLRR LE+A+   D+AEVERIK RL++LEA ++   
Sbjct: 409  TVKQMIQEKKSASSRPLNIALEKDRLRRELEIAQSKHDDAEVERIKARLEQLEARQQSQG 468

Query: 1388 KDSKAIKLAEMNRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXX 1567
            KDSKA++LAEMNR+NRV+NFKNAS L+PV  GLKAGEAGYDPFSRRWTRSRNYYV     
Sbjct: 469  KDSKAVRLAEMNRKNRVDNFKNASGLKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPDE 528

Query: 1568 XXXXXXXXXXXXXXXETLIVKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGT 1747
                             +     GG V                    KL+DT APVDQGT
Sbjct: 529  QKDDAEANAVAAESLAEVETNGTGGVVAVRAGLEATAAALEAAAGAGKLIDTMAPVDQGT 588

Query: 1748 ESYMLHN 1768
             S  LHN
Sbjct: 589  SSNPLHN 595


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
            gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
            [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score =  493 bits (1268), Expect = e-136
 Identities = 285/599 (47%), Positives = 363/599 (60%), Gaps = 29/599 (4%)
 Frame = +2

Query: 59   MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSRKPS 238
            M DLE LLLEAAGRT                                      Y+SRKPS
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSRHPPSSRRREGSYSDGSSDSRDDSDEDRG---YASRKPS 57

Query: 239  ASQVPLKKRLDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LYKDEDDREKLSKLT 415
             SQVPLKKRL+                                  LYK+E+DR+KL+ +T
Sbjct: 58   GSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMT 117

Query: 416  ELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKAPTRSMRSKAERAG--- 571
            E +REMIL  RA K+ D++ TEKL+ ++  ++     K + P   +R +RS A  A    
Sbjct: 118  EFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAA 177

Query: 572  ----ALDELVKRR------------RESAKGGSGKR-YSPVKRRSFAAATLNSPXXXXXX 700
                AL+EL  +R            R+++KGGSG R +S +KR+  A++ L+S       
Sbjct: 178  AKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSMKRKPLASSNLSSSSQSDSD 237

Query: 701  XXXXXXXXXXXXXLADSDDDKISAESKVPTFEDIREITIRRSKLAKWFMEPYFDELIVGC 880
                         + DSDDD+    S VPTFED++EITIRRSKLAKW MEP+F+ELIVGC
Sbjct: 238  SRSQSDDEGSNAGMLDSDDDR----SDVPTFEDVKEITIRRSKLAKWLMEPFFEELIVGC 293

Query: 881  FVRVGIGKSRSGPIYRLCVVRNVDATDPDRQYKFDNKTTHKYLNVVWGNDSSAARWQMAM 1060
            FVRVGIG+S+SGPIYRLC V+NVDATDPD+ YK +NKTTHKYLNVVWGN++SAARWQMAM
Sbjct: 294  FVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMAM 353

Query: 1061 ISDSPPLKEEFDQWMREVERSGGHLPSKQEVLDKKDAIQKPNTYVYDAATVKQMVKEKKS 1240
            ISD  PL+EE+ QW+REVER+ G +P+KQ++ +KK+AIQ+ N++VY A TVKQM++EKKS
Sbjct: 354  ISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRINSFVYSAETVKQMLQEKKS 413

Query: 1241 ATWRPLNVAAEKDRLRRSLEVAKENKDEAEVERIKTRLKELEASRRVLEKDSKAIKLAEM 1420
            A+ RP+NVAAEKDRLR+ LE+A+   DEA VERIKT++K+L+ASR     D KA+KLAEM
Sbjct: 414  ASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDASRNKKGVDKKALKLAEM 473

Query: 1421 NRRNRVENFKNASELRPVNAGLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXXXXXXXX 1600
            N++NR ENFKNASE++ ++A LKAGEAGYDPFSRRWTRS NYY                 
Sbjct: 474  NKKNRAENFKNASEVKSISASLKAGEAGYDPFSRRWTRSSNYY---------NGKNKGKD 524

Query: 1601 XXXXETLI---VKNGGGAVFXXXXXXXXXXXXXXXXXXXKLVDTRAPVDQGTESYMLHN 1768
                ET +   V+  G  V                    KL+DTRAP+ QG E   LHN
Sbjct: 525  GEENETAVAAAVETNGADV--GAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHN 581